Psyllid ID: psy12016

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MFFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccccccccccEccccccccHHHHHHHHHHHHHccccccccccccccccccccEEEEccHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MFFLFFLEYLSVwqndsgmftcdvcfkeykykrglvrhkknsckqkpqnldglfscdvcgkhykykkglgrhkryecgqepkyecdqcphrtkhISSLKKHMALKHGVESQ
Flexible Loop (DISEMBL)
MFFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKrglvrhkknsckqkpqnldglfscdvCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ
Low Complexity Region (SEG)
MFFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ
Disordered region (IsUnstruct)
*FFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECD*************************
Disordered Region (DISOPRED)
MFFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHM**KH*****
Disordered Region (DISEMBL)
MFFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHR********************
Disordered Region (DISPRO)
MFFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHIS*LKKH**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q60542	1043	Zinc finger E-box-binding	N/A	N/A	0.738	0.078	0.337	1e-10
P37275	1124	Zinc finger E-box-binding	yes	N/A	0.738	0.072	0.337	1e-10
Q64318	1117	Zinc finger E-box-binding	yes	N/A	0.738	0.073	0.337	2e-10
P36197	1114	Zinc finger E-box-binding	yes	N/A	0.738	0.073	0.337	2e-10
Q62947	1109	Zinc finger E-box-binding	no	N/A	0.720	0.072	0.344	3e-10
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.540	0.068	0.442	6e-10
G5EBU4	596	Zinc finger E-box-binding	yes	N/A	0.720	0.134	0.367	5e-09
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.414	0.058	0.411	2e-08
Q9R0G7	1215	Zinc finger E-box-binding	no	N/A	0.756	0.069	0.340	3e-08
O60315	1214	Zinc finger E-box-binding	no	N/A	0.756	0.069	0.340	3e-08

>sp|Q60542|ZEB1_MESAU Zinc finger E-box-binding homeobox 1 OS=Mesocricetus auratus GN=ZEB1 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 14  QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
           + ++GM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  H 
Sbjct: 821 KTENGMYACDLCDKIFQKSSSLLRHKYEHTGKRPH------ECGICKKAFKHKHHLIEHM 874

Query: 74  RYECGQEPKYECDQCPHRTKHISSLKKHM 102
           R   G++P Y+CD+C  R  H  S  +HM
Sbjct: 875 RLHSGEKP-YQCDKCGKRFSHSGSYSQHM 902

Acts as a transcriptional repressor. Binds to E-box sequences in the immunoglobulin heavy chain enhancer as well as in the regulatory regions of many other tissue-specific genes. Represses E-cadherin promoter and induces an epithelial-mesenchymal transition (EMT) by recruiting SMARCA4/BRG1. Represses BCL6 transcription in the presence of the corepressor CTBP1. Positively regulates neuronal differentiation. Represses RCOR1 transcription activation during neurogenesis. Represses transcription by binding to the E box (5'-CANNTG-3'). Promotes tumorigenicity by repressing stemness-inhibiting microRNAs.
Mesocricetus auratus (taxid: 10036)

>sp|P37275|ZEB1_HUMAN Zinc finger E-box-binding homeobox 1 OS=Homo sapiens GN=ZEB1 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 14  QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
           + ++GM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  H 
Sbjct: 898 KTENGMYACDLCDKIFQKSSSLLRHKYEHTGKRPH------ECGICKKAFKHKHHLIEHM 951

Query: 74  RYECGQEPKYECDQCPHRTKHISSLKKHM 102
           R   G++P Y+CD+C  R  H  S  +HM
Sbjct: 952 RLHSGEKP-YQCDKCGKRFSHSGSYSQHM 979

Acts as a transcriptional repressor. Inhibits interleukin-2 (IL-2) gene expression. Enhances or represses the promoter activity of the ATP1A1 gene depending on the quantity of cDNA and on the cell type. Represses E-cadherin promoter and induces an epithelial-mesenchymal transition (EMT) by recruiting SMARCA4/BRG1. Represses BCL6 transcription in the presence of the corepressor CTBP1. Positively regulates neuronal differentiation. Represses RCOR1 transcription activation during neurogenesis. Represses transcription by binding to the E box (5'-CANNTG-3'). Promotes tumorigenicity by repressing stemness-inhibiting microRNAs.

Homo sapiens (taxid: 9606)

>sp|Q64318|ZEB1_MOUSE Zinc finger E-box-binding homeobox 1 OS=Mus musculus GN=Zeb1 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 14  QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
           + ++GM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  H 
Sbjct: 876 KTENGMYACDLCDKIFQKSSSLLRHKYEHTGKRPH------ECGICRKAFKHKHHLIEHM 929

Query: 74  RYECGQEPKYECDQCPHRTKHISSLKKHM 102
           R   G++P Y+CD+C  R  H  S  +HM
Sbjct: 930 RLHSGEKP-YQCDKCGKRFSHSGSYSQHM 957

Acts as a transcriptional repressor. Binds to E-box sequences in the immunoglobulin heavy chain enhancer as well as in the regulatory regions of many other tissue-specific genes. Represses E-cadherin promoter and induces an epithelial-mesenchymal transition (EMT) by recruiting SMARCA4/BRG1. Represses BCL6 transcription in the presence of the corepressor CTBP1 (By similarity). Positively regulates neuronal differentiation. Represses RCOR1 transcription activation during neurogenesis. Represses transcription by binding to the E box (5'-CANNTG-3'). Promotes tumorigenicity by repressing stemness-inhibiting microRNAs.

Mus musculus (taxid: 10090)

>sp|P36197|ZEB1_CHICK Zinc finger E-box-binding homeobox 1 OS=Gallus gallus GN=ZEB1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 14  QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
           + ++GM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  H 
Sbjct: 898 KTENGMYACDLCDKIFQKSSSLLRHKYEHTGKRPH------ECGICKKAFKHKHHLIEHM 951

Query: 74  RYECGQEPKYECDQCPHRTKHISSLKKHM 102
           R   G++P Y+CD+C  R  H  S  +HM
Sbjct: 952 RLHSGEKP-YQCDKCGKRFSHSGSYSQHM 979

Acts as a transcriptional repressor. Positively regulates neuronal differentiation. Represses transcription by binding to the E box-containing promoter (By similarity). Binds to delta 1-crystallin enhancer core and represses lens-specific transcription. It binds as well many other non-lens specific DNA sequences.

Gallus gallus (taxid: 9031)

>sp|Q62947|ZEB1_RAT Zinc finger E-box-binding homeobox 1 OS=Rattus norvegicus GN=Zeb1 PE=2 SV=2

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 16  DSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRY 75
           ++GM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  H R 
Sbjct: 877 ENGMYACDLCDKIFQKSSSLLRHKYEHTGKRPH------ECGICRKAFKHKHHLIEHMRL 930

Query: 76  ECGQEPKYECDQCPHRTKHISSLKKHM 102
             G++P Y+CD+C  R  H  S  +HM
Sbjct: 931 HSGEKP-YQCDKCGKRFSHSGSYSQHM 956

Acts as a transcriptional repressor. Binds to E-box sequences in the immunoglobulin heavy chain enhancer as well as in the regulatory regions of many other tissue-specific genes. Represses E-cadherin promoter and induces an epithelial-mesenchymal transition (EMT) by recruiting SMARCA4/BRG1. Represses BCL6 transcription in the presence of the corepressor CTBP1. Positively regulates neuronal differentiation. Represses RCOR1 transcription activation during neurogenesis. Represses transcription by binding to the E box (5'-CANNTG-3'). Promotes tumorigenicity by repressing stemness-inhibiting microRNAs.

Rattus norvegicus (taxid: 10116)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 51  DGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVES 110
           D  ++C+VCGK YK K  L RHK YECG EP  +C  CPH+ K + +   +  ++HG ++
Sbjct: 706 DCKYACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCKCVLAQVVNF-VRHGPKN 764

Query: 111 Q 111
           Q
Sbjct: 765 Q 765

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|G5EBU4|ZAG1_CAEEL Zinc finger E-box-binding homebox protein zag-1 OS=Caenorhabditis elegans GN=zag-1 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 16  DSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRY 75
           + G+F+CD C K +  +  L RHK     Q+P      + CD+C K +K+K  L  HKR 
Sbjct: 477 EEGLFSCDQCDKVFGKQSSLARHKYEHSGQRP------YKCDICEKAFKHKHHLTEHKRL 530

Query: 76  ECGQEPKYECDQCPHRTKHISSLKKHM 102
             G++P ++CD+C  R  H  S  +HM
Sbjct: 531 HSGEKP-FQCDKCLKRFSHSGSYSQHM 556

Down-regulates expression of genes involved in either the synthesis or reuptake of serotonin, dopamine and GABA. Acts as a transcriptional repressor to regulate multiple, discrete, neuron-specific aspects of terminal differentiation, including cell migration, axonal development and gene expression. Required for axon guidance. Involved in the proper development of the pharynx. Directly represses its own transcription by interacting with conserved E-box sequence motifs 5'-CACCTG-3' in its own promoter.

Caenorhabditis elegans (taxid: 6239)

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query: 56  CDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKH 106
           C VCG+ YK K  L  H+++ECG+EP+++C  C +R K    + +HM   H
Sbjct: 687 CPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 737

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9R0G7|ZEB2_MOUSE Zinc finger E-box-binding homeobox 2 OS=Mus musculus GN=Zeb2 PE=1 SV=2

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 12   VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGR 71
            + + +SGM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  
Sbjct: 991  IKKTESGMYACDLCDKTFQKSSSLLRHKYEHTGKRPHQ------CQICKKAFKHKHHLIE 1044

Query: 72   HKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
            H R   G++P Y+CD+C  R  H  S  +HM
Sbjct: 1045 HSRLHSGEKP-YQCDKCGKRFSHSGSYSQHM 1074

Transcriptional inhibitor that binds to DNA sequence 5'-CACCT-3' in different promoters. Represses transcription of E-cadherin.

Mus musculus (taxid: 10090)

>sp|O60315|ZEB2_HUMAN Zinc finger E-box-binding homeobox 2 OS=Homo sapiens GN=ZEB2 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 12   VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGR 71
            + + +SGM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  
Sbjct: 991  IKKTESGMYACDLCDKTFQKSSSLLRHKYEHTGKRPHQ------CQICKKAFKHKHHLIE 1044

Query: 72   HKRYECGQEPKYECDQCPHRTKHISSLKKHM 102
            H R   G++P Y+CD+C  R  H  S  +HM
Sbjct: 1045 HSRLHSGEKP-YQCDKCGKRFSHSGSYSQHM 1074

Transcriptional inhibitor that binds to DNA sequence 5'-CACCT-3' in different promoters. Represses transcription of E-cadherin.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
45552567	771	longitudinals lacking, isoform W [Drosop	0.711	0.102	0.433	9e-13
241025813	852	transcription factor, putative [Ixodes s	0.729	0.095	0.375	2e-10
195425431	220	GK19011 [Drosophila willistoni] gi|19415	0.531	0.268	0.566	2e-10
195026424	319	GH20627 [Drosophila grimshawi] gi|193902	0.513	0.178	0.543	3e-10
47225202	1027	unnamed protein product [Tetraodon nigro	0.738	0.079	0.348	3e-10
16648060	331	GH08307p [Drosophila melanogaster]	0.711	0.238	0.433	4e-10
195120832	325	GI20188 [Drosophila mojavensis] gi|19390	0.513	0.175	0.543	5e-10
348525528	1102	PREDICTED: zinc finger E-box-binding hom	0.738	0.074	0.359	5e-10
195153473	175	GL17195 [Drosophila persimilis] gi|19411	0.504	0.32	0.571	5e-10
410931906	958	PREDICTED: zinc finger E-box-binding hom	0.738	0.085	0.348	6e-10

>gi|45552567|ref|NP_995806.1| longitudinals lacking, isoform W [Drosophila melanogaster] gi|29539421|dbj|BAC67593.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539461|dbj|BAC67613.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539501|dbj|BAC67633.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539541|dbj|BAC67653.1| Lola protein isoform Q [Drosophila melanogaster] gi|45445597|gb|AAS64876.1| longitudinals lacking, isoform W [Drosophila melanogaster]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 27  KEYKYKRGL--VRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYE 84
           +E  Y  G+  + H   +   +P   D  ++C+VCGK YK K  L RHK YECG EP  +
Sbjct: 682 QEKLYINGMSNIIHTATTMTLQPD--DCKYACNVCGKTYKIKGSLKRHKNYECGVEPNLK 739

Query: 85  CDQCPHRTKHISSLKKHMALKHG 107
           C  CPH+ K+ S L+KHM  KH 
Sbjct: 740 CPHCPHKCKYRSDLRKHMNQKHA 762

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241025813|ref|XP_002406198.1| transcription factor, putative [Ixodes scapularis] gi|215491886|gb|EEC01527.1| transcription factor, putative [Ixodes scapularis]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 15  NDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR 74
           ++ GMF+CD C K +  +  L RHK     Q+P        CDVC K +K+K  L  HKR
Sbjct: 625 SEEGMFSCDQCDKMFSKQSSLARHKYEHSGQRPHK------CDVCEKAFKHKHHLTEHKR 678

Query: 75  YECGQEPKYECDQCPHRTKHISSLKKHM 102
              G++P ++C +C  R  H  S  +HM
Sbjct: 679 LHSGEKP-FQCQKCLKRFSHSGSYSQHM 705

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195425431|ref|XP_002061011.1| GK19011 [Drosophila willistoni] gi|194157096|gb|EDW71997.1| GK19011 [Drosophila willistoni]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 49  NLD-GLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
           NLD   F+C+VCGK YK K  L RHK YECG EP  +C  CPH+ K+ S L+KHM  KH 
Sbjct: 146 NLDEAKFACNVCGKTYKIKGSLKRHKNYECGVEPTLKCPHCPHKCKYKSDLRKHMNQKHA 205

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195026424|ref|XP_001986253.1| GH20627 [Drosophila grimshawi] gi|193902253|gb|EDW01120.1| GH20627 [Drosophila grimshawi]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 38/57 (66%)

Query: 51  DGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
           D  ++C+VCGK YK K  L RHK YECG EP  +C  CPH+ K+ S L+KHM  KH 
Sbjct: 253 DAKYACNVCGKTYKIKGSLKRHKNYECGVEPTLKCPHCPHKCKYKSDLRKHMNQKHS 309

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47225202|emb|CAF98829.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 7/89 (7%)

Query: 14  QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
           ++D+GM+ CD+C K ++    L+RHK     ++P        C++C K +K+K  L  H 
Sbjct: 841 KSDNGMYACDLCDKIFQKSSSLLRHKYEHTGKRPH------ECNICSKAFKHKHHLIEHM 894

Query: 74  RYECGQEPKYECDQCPHRTKHISSLKKHM 102
           R   G++P Y+CD+C  R  H  S  +HM
Sbjct: 895 RLHSGEKP-YQCDKCGKRFSHSGSYSQHM 922

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|16648060|gb|AAL25295.1| GH08307p [Drosophila melanogaster]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 27  KEYKYKRGL--VRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYE 84
           +E  Y  G+  + H   +   +P   D  ++C+VCGK YK K  L RHK YECG EP  +
Sbjct: 242 QEKLYINGMSNIIHTATTMTLQPD--DCKYACNVCGKTYKIKGSLKRHKNYECGVEPNLK 299

Query: 85  CDQCPHRTKHISSLKKHMALKHG 107
           C  CPH+ K+ S L+KHM  KH 
Sbjct: 300 CPHCPHKCKYRSDLRKHMNQKHA 322

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195120832|ref|XP_002004925.1| GI20188 [Drosophila mojavensis] gi|193909993|gb|EDW08860.1| GI20188 [Drosophila mojavensis]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 38/57 (66%)

Query: 51  DGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
           D  ++C+VCGK YK K  L RHK YECG EP  +C  CPH+ K+ S L+KHM  KH 
Sbjct: 259 DAKYACNVCGKTYKIKGSLKRHKNYECGVEPTLKCPHCPHKCKYKSDLRKHMNQKHS 315

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348525528|ref|XP_003450274.1| PREDICTED: zinc finger E-box-binding homeobox 1-like [Oreochromis niloticus]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 14  QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
           + DSGM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  H 
Sbjct: 827 KTDSGMYACDLCDKIFQKSSSLLRHKYEHTGKRPH------ECGICSKAFKHKHHLIEHM 880

Query: 74  RYECGQEPKYECDQCPHRTKHISSLKKHM 102
           R   G++P Y+CD+C  R  H  S  +HM
Sbjct: 881 RLHSGEKP-YQCDKCGKRFSHSGSYSQHM 908

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195153473|ref|XP_002017650.1| GL17195 [Drosophila persimilis] gi|194113446|gb|EDW35489.1| GL17195 [Drosophila persimilis]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 38/56 (67%)

Query: 51  DGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKH 106
           D  F+C+VCGK YK K  L RHK YECG EP  +C  CPH+ K+ S L+KHM  KH
Sbjct: 109 DSKFACNVCGKTYKIKGSLKRHKNYECGVEPALKCPHCPHKCKYKSDLRKHMNQKH 164

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410931906|ref|XP_003979336.1| PREDICTED: zinc finger E-box-binding homeobox 1-like, partial [Takifugu rubripes]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 14  QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
           + DSG++ CD+C K ++    L+RHK     ++P        C++C K +K+K  L  H 
Sbjct: 782 KTDSGLYACDLCDKIFQKSSSLLRHKYEHTGKRPH------ECNICSKAFKHKHHLIEHM 835

Query: 74  RYECGQEPKYECDQCPHRTKHISSLKKHM 102
           R   G++P Y+CD+C  R  H  S  +HM
Sbjct: 836 RLHSGEKP-YQCDKCGKRFSHSGSYSQHM 863

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
UNIPROTKB|F1MRQ1	560	F1MRQ1 "Uncharacterized protei	0.756	0.15	0.352	9.7e-13
UNIPROTKB|G3MXP4	588	G3MXP4 "Uncharacterized protei	0.756	0.142	0.352	1.1e-12
WB|WBGene00006970	596	zag-1 [Caenorhabditis elegans	0.738	0.137	0.359	7.8e-12
UNIPROTKB|I3LG89	233	LOC100738577 "Uncharacterized	0.738	0.351	0.337	1.3e-11
UNIPROTKB|E9PT24	1009	Zeb1 "Zinc finger E-box-bindin	0.720	0.079	0.344	1.5e-11
UNIPROTKB|J9NZC3	573	ZNF548 "Uncharacterized protei	0.891	0.172	0.314	2.5e-11
ZFIN|ZDB-GENE-050208-649	456	si:ch211-222k6.1 "si:ch211-222	0.729	0.177	0.386	4.6e-11
ZFIN|ZDB-GENE-080219-52	456	zgc:174564 "zgc:174564" [Danio	0.729	0.177	0.386	4.6e-11
UNIPROTKB|F1NE82	1190	ZEB2 "Uncharacterized protein"	0.738	0.068	0.348	7e-11
UNIPROTKB|F1PKS2	1191	ZEB2 "Uncharacterized protein"	0.738	0.068	0.348	7e-11

UNIPROTKB|F1MRQ1 F1MRQ1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 9.7e-13, P = 9.7e-13
 Identities = 31/88 (35%), Positives = 53/88 (60%)

Query:    20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
             + C+VC K +K++  ++RH+K+  +++P+     FSCD C K ++Y   L RHK+    +
Sbjct:   451 YKCNVCEKTFKHQSNVIRHQKSHSEERPETP---FSCDGCEKTFRYYSDLNRHKKIHTEE 507

Query:    80 EPKYECDQCPHRTKHISSLKKHMALKHG 107
             +P Y+C +C     H S+L KHM +  G
Sbjct:   508 KP-YKCSECQKAFNHSSNLSKHMKIHTG 534

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3MXP4 G3MXP4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 31/88 (35%), Positives = 53/88 (60%)

Query:    20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
             + C+VC K +K++  ++RH+K+  +++P+     FSCD C K ++Y   L RHK+    +
Sbjct:   475 YKCNVCEKTFKHQSNVIRHQKSHSEERPETP---FSCDGCEKTFRYYSDLNRHKKIHTEE 531

Query:    80 EPKYECDQCPHRTKHISSLKKHMALKHG 107
             +P Y+C +C     H S+L KHM +  G
Sbjct:   532 KP-YKCSECQKAFNHSSNLSKHMKIHTG 558

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

WB|WBGene00006970 zag-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 170 (64.9 bits), Expect = 7.8e-12, P = 7.8e-12
 Identities = 32/89 (35%), Positives = 49/89 (55%)

Query:    14 QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
             + + G+F+CD C K +  +  L RHK     Q+P      + CD+C K +K+K  L  HK
Sbjct:   475 KEEEGLFSCDQCDKVFGKQSSLARHKYEHSGQRP------YKCDICEKAFKHKHHLTEHK 528

Query:    74 RYECGQEPKYECDQCPHRTKHISSLKKHM 102
             R   G++P ++CD+C  R  H  S  +HM
Sbjct:   529 RLHSGEKP-FQCDKCLKRFSHSGSYSQHM 556

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0045773 "positive regulation of axon extension" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

UNIPROTKB|I3LG89 LOC100738577 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 30/89 (33%), Positives = 48/89 (53%)

Query:    14 QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
             + ++GM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  H 
Sbjct:     3 KTENGMYACDLCDKIFQKSSSLLRHKYEHTGKRPHE------CGICKKAFKHKHHLIEHM 56

Query:    74 RYECGQEPKYECDQCPHRTKHISSLKKHM 102
             R   G++P Y+CD+C  R  H  S  +HM
Sbjct:    57 RLHSGEKP-YQCDKCGKRFSHSGSYSQHM 84

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E9PT24 Zeb1 "Zinc finger E-box-binding homeobox 1" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 30/87 (34%), Positives = 47/87 (54%)

Query:    16 DSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRY 75
             ++GM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  H R 
Sbjct:   777 ENGMYACDLCDKIFQKSSSLLRHKYEHTGKRPHE------CGICRKAFKHKHHLIEHMRL 830

Query:    76 ECGQEPKYECDQCPHRTKHISSLKKHM 102
               G++P Y+CD+C  R  H  S  +HM
Sbjct:   831 HSGEKP-YQCDKCGKRFSHSGSYSQHM 856

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|J9NZC3 ZNF548 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 34/108 (31%), Positives = 53/108 (49%)

Query:     2 FFLFFLEYLSVWQNDSGM--FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC 59
             FF +  + +  WQN +G   + C  C K ++Y   L+RHK+    ++P      + C VC
Sbjct:   433 FFRYKSKLIKHWQNHTGERPYECSECGKSFRYHCRLIRHKRVHTGERP------YECSVC 486

Query:    60 GKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
             GK ++Y   L +H R   G+ P YEC +C     H   L +H  +  G
Sbjct:   487 GKFFRYNSNLIKHWRNHTGERP-YECSECGKAFSHKHILVEHQKIHTG 533

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-050208-649 si:ch211-222k6.1 "si:ch211-222k6.1" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 4.6e-11, P = 4.6e-11
 Identities = 34/88 (38%), Positives = 45/88 (51%)

Query:    20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
             FTCD C K + +K  L  H K    +KP       +CD CGK + YK  L  H +   G+
Sbjct:   142 FTCDQCGKNFLHKGYLTEHIKIHTGEKPH------TCDQCGKRFAYKGNLTDHMKVHTGE 195

Query:    80 EPKYECDQCPHRTKHISSLKKHMALKHG 107
              P Y CDQC  R KH  +L +H+ +  G
Sbjct:   196 RP-YACDQCAKRFKHKGNLIEHVKIHTG 222

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-080219-52 zgc:174564 "zgc:174564" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 4.6e-11, P = 4.6e-11
 Identities = 34/88 (38%), Positives = 45/88 (51%)

Query:    20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
             FTCD C K + +K  L  H K    +KP       +CD CGK + YK  L  H +   G+
Sbjct:   142 FTCDQCGKNFLHKGYLTEHIKIHTGEKPH------TCDQCGKRFAYKGNLTDHMKVHTGE 195

Query:    80 EPKYECDQCPHRTKHISSLKKHMALKHG 107
              P Y CDQC  R KH  +L +H+ +  G
Sbjct:   196 RP-YACDQCAKRFKHKGNLIEHVKIHTG 222

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NE82 ZEB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 31/89 (34%), Positives = 48/89 (53%)

Query:    14 QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
             + +SGM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  H 
Sbjct:   969 KTESGMYACDLCDKTFQKSSSLLRHKYEHTGKRPHQ------CQICKKAFKHKHHLIEHS 1022

Query:    74 RYECGQEPKYECDQCPHRTKHISSLKKHM 102
             R   G++P Y+CD+C  R  H  S  +HM
Sbjct:  1023 RLHSGEKP-YQCDKCGKRFSHSGSYSQHM 1050

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0001755 "neural crest cell migration" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021846 "cell proliferation in forebrain" evidence=IEA

GO:0030177 "positive regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0043507 "positive regulation of JUN kinase activity" evidence=IEA

UNIPROTKB|F1PKS2 ZEB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 165 (63.1 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 31/89 (34%), Positives = 48/89 (53%)

Query:    14 QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK 73
             + +SGM+ CD+C K ++    L+RHK     ++P        C +C K +K+K  L  H 
Sbjct:   970 KTESGMYACDLCDKTFQKSSSLLRHKYEHTGKRPHQ------CQICKKAFKHKHHLIEHS 1023

Query:    74 RYECGQEPKYECDQCPHRTKHISSLKKHM 102
             R   G++P Y+CD+C  R  H  S  +HM
Sbjct:  1024 RLHSGEKP-YQCDKCGKRFSHSGSYSQHM 1051

GO:0043507 "positive regulation of JUN kinase activity" evidence=IEA

GO:0030177 "positive regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0021846 "cell proliferation in forebrain" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001755 "neural crest cell migration" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
COG5189	423	COG5189, SFP1, Putative transcriptional repressor	0.003

>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 15/75 (20%)

Query: 16  DSGMFTCDV--CFKEYKYKRGLVRHKKNS-CKQK------PQNLDGL------FSCDVCG 60
           D   + C V  C K+YK + GL  H  +    QK      P+ ++        + C+VC 
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405

Query: 61  KHYKYKKGLGRHKRY 75
           K YK   GL  H+++
Sbjct: 406 KRYKNLNGLKYHRKH 420

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG2462|consensus	279		99.94
KOG2462|consensus	279		99.87
KOG3623|consensus	1007		99.69
KOG1074|consensus	958		99.68
KOG3576|consensus	267		99.66
KOG1074|consensus	958		99.63
KOG3623|consensus	1007		99.56
KOG3608|consensus	467		99.52
KOG3576|consensus	267		99.52
PHA00733	128	hypothetical protein	99.34
KOG3608|consensus	467		99.23
PHA02768	55	hypothetical protein; Provisional	99.05
PHA02768	55	hypothetical protein; Provisional	99.05
PHA00733	128	hypothetical protein	99.01
PLN03086	567	PRLI-interacting factor K; Provisional	98.98
PLN03086	567	PRLI-interacting factor K; Provisional	98.93
PHA00616	44	hypothetical protein	98.9
KOG3993|consensus	500		98.84
KOG3993|consensus	500		98.8
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.79
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.78
PHA00616	44	hypothetical protein	98.57
PHA00732	79	hypothetical protein	98.49
PHA00732	79	hypothetical protein	98.48
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.47
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.35
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.25
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.25
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	98.19
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.15
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.04
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.04
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.92
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.84
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.79
smart00355	26	ZnF_C2H2 zinc finger.	97.65
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.53
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.45
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.41
smart00355	26	ZnF_C2H2 zinc finger.	97.4
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.35
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.0
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.99
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.87
PRK04860	160	hypothetical protein; Provisional	96.82
PRK04860	160	hypothetical protein; Provisional	96.76
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.5
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.35
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.18
KOG1146|consensus	1406		95.55
COG4049	65	Uncharacterized protein containing archaeal-type C	94.9
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.7
COG4049	65	Uncharacterized protein containing archaeal-type C	94.32
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.04
KOG4173|consensus	253		92.87
COG1592	166	Rubrerythrin [Energy production and conversion]	92.73
KOG2893|consensus	341		92.61
KOG2893|consensus	341		92.17
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.17
KOG2231|consensus	669		91.95
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.79
COG5048	467	FOG: Zn-finger [General function prediction only]	91.61
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	91.2
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	91.13
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	90.82
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	90.77
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	90.72
PRK06266	178	transcription initiation factor E subunit alpha; V	90.3
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	90.0
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	89.71
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	89.71
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	89.42
COG5048	467	FOG: Zn-finger [General function prediction only]	89.38
smart00531	147	TFIIE Transcription initiation factor IIE.	89.08
KOG2482|consensus	423		89.05
COG5236	493	Uncharacterized conserved protein, contains RING Z	88.97
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	88.93
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	88.74
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	88.36
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	88.13
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	86.89
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	86.69
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	86.68
KOG2186|consensus	276		86.18
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	85.39
KOG2186|consensus	276		85.18
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	84.92
KOG4167|consensus	907		83.76
COG5189	423	SFP1 Putative transcriptional repressor regulating	83.61
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	83.29
KOG2482|consensus	423		83.09
KOG2231|consensus	669		83.04
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	82.67
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	81.01
PF00301	47	Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubred	80.63
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	80.03

>KOG2462|consensus

Probab=99.94  E-value=4.7e-27  Score=137.52  Aligned_cols=101  Identities=24%  Similarity=0.394  Sum_probs=91.2

Q ss_pred             hHHHHHHhhhhhcC---CCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcC
Q psy12016          2 FFLFFLEYLSVWQN---DSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus         2 ~~~~~l~~~~~~~~---~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      .+...|..|.++|-   ..+.+.|+.|++.+.+...|.-|+++|+.  +      ..|.+||+.|.+++.|+.|+++|+|
T Consensus       141 sT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l--~------c~C~iCGKaFSRPWLLQGHiRTHTG  212 (279)
T KOG2462|consen  141 STSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTL--P------CECGICGKAFSRPWLLQGHIRTHTG  212 (279)
T ss_pred             ccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCC--C------cccccccccccchHHhhcccccccC
Confidence            45566778888883   36678999999999999999999999984  3      8999999999999999999999999


Q ss_pred             CCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         79 QEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+ ||.|..|+++|+.+++|+.|+++|.+.|+|
T Consensus       213 EK-PF~C~hC~kAFADRSNLRAHmQTHS~~K~~  244 (279)
T KOG2462|consen  213 EK-PFSCPHCGKAFADRSNLRAHMQTHSDVKKH  244 (279)
T ss_pred             CC-CccCCcccchhcchHHHHHHHHhhcCCccc
Confidence            88 999999999999999999999999999987

>KOG2462|consensus

Probab=99.87  E-value=1e-22  Score=119.50  Aligned_cols=93  Identities=25%  Similarity=0.374  Sum_probs=86.8

Q ss_pred             HHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCc
Q psy12016          3 FLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPK   82 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   82 (111)
                      .+=.|+.|+++|+  -+..|.+||+.|...=.|+.|+++|+|++|      |.|..|+++|...++|..|+++|.+.+ +
T Consensus       173 SmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKP------F~C~hC~kAFADRSNLRAHmQTHS~~K-~  243 (279)
T KOG2462|consen  173 SMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKP------FSCPHCGKAFADRSNLRAHMQTHSDVK-K  243 (279)
T ss_pred             ehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCC------ccCCcccchhcchHHHHHHHHhhcCCc-c
Confidence            3446899999987  789999999999999999999999999999      999999999999999999999998887 9


Q ss_pred             cccCCCCcccccchhHHHHHHH
Q psy12016         83 YECDQCPHRTKHISSLKKHMAL  104 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (111)
                      |.|..|++.|...+.|.+|...
T Consensus       244 ~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  244 HQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ccCcchhhHHHHHHHHHHhhhh
Confidence            9999999999999999999764

>KOG3623|consensus

Probab=99.69  E-value=5.2e-18  Score=110.85  Aligned_cols=82  Identities=37%  Similarity=0.810  Sum_probs=78.4

Q ss_pred             CCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCccccc
Q psy12016         15 NDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKH   94 (111)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~   94 (111)
                      +.+++|.|+.|++.|...+.|.+|...|+|.++      |.|.+|.++|..+-.|..|++.|.|++ ||.|+.|++.|..
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRP------yqC~iCkKAFKHKHHLtEHkRLHSGEK-PfQCdKClKRFSH  962 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHKYEHSGQRP------YQCIICKKAFKHKHHLTEHKRLHSGEK-PFQCDKCLKRFSH  962 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhhhhhcCCCC------cccchhhHhhhhhhhhhhhhhhccCCC-cchhhhhhhhccc
Confidence            467899999999999999999999999999999      999999999999999999999999988 9999999999999


Q ss_pred             chhHHHHHH
Q psy12016         95 ISSLKKHMA  103 (111)
Q Consensus        95 ~~~l~~H~~  103 (111)
                      .+.+..||.
T Consensus       963 SGSYSQHMN  971 (1007)
T KOG3623|consen  963 SGSYSQHMN  971 (1007)
T ss_pred             ccchHhhhc
Confidence            999999975

>KOG1074|consensus

Probab=99.68  E-value=1.9e-17  Score=109.28  Aligned_cols=56  Identities=29%  Similarity=0.540  Sum_probs=52.7

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVES  110 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~  110 (111)
                      ..|.+|++.|.....|..|+++|++++ ||.|.+|++.|..+.+|+.||.+|+..+|
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~K-PF~C~fC~~aFttrgnLKvHMgtH~w~q~  935 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPK-PFFCHFCEEAFTTRGNLKVHMGTHMWVQP  935 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCC-CccchhhhhhhhhhhhhhhhhccccccCC
Confidence            489999999999999999999999988 99999999999999999999999987655

>KOG3576|consensus

Probab=99.66  E-value=2.3e-17  Score=93.66  Aligned_cols=85  Identities=35%  Similarity=0.630  Sum_probs=76.6

Q ss_pred             CCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccc
Q psy12016         16 DSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHI   95 (111)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~   95 (111)
                      ....|.|.+|++.|....-|.+|++.|...+.      +.|..||+.|.....|..|.++|+|-+ ||+|..|+++|..+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr------~lct~cgkgfndtfdlkrh~rthtgvr-pykc~~c~kaftqr  186 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKR------HLCTFCGKGFNDTFDLKRHTRTHTGVR-PYKCSLCEKAFTQR  186 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHH------HHHhhccCcccchhhhhhhhccccCcc-ccchhhhhHHHHhh
Confidence            34568999999999999999999999988877      999999999999999999999999977 99999999999999


Q ss_pred             hhHHHHHHHhhC
Q psy12016         96 SSLKKHMALKHG  107 (111)
Q Consensus        96 ~~l~~H~~~~~~  107 (111)
                      ..|..|++.-||
T Consensus       187 csleshl~kvhg  198 (267)
T KOG3576|consen  187 CSLESHLKKVHG  198 (267)
T ss_pred             ccHHHHHHHHcC
Confidence            999999875554

>KOG1074|consensus

Probab=99.63  E-value=1.2e-16  Score=105.58  Aligned_cols=53  Identities=23%  Similarity=0.479  Sum_probs=50.2

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      ..|..|.+.....+.|+.|-++|+|++ ||+|.+|+++|..+.+|+.|+.+|..
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGER-PFkCKiCgRAFtTkGNLkaH~~vHka  658 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGER-PFKCKICGRAFTTKGNLKAHMSVHKA  658 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcC-ccccccccchhccccchhhccccccc
Confidence            389999999999999999999999988 99999999999999999999998875

>KOG3623|consensus

Probab=99.56  E-value=1.8e-15  Score=99.31  Aligned_cols=99  Identities=30%  Similarity=0.573  Sum_probs=81.4

Q ss_pred             HHHHHhhhhhcC--CCCceecCCCcccccchhHHHHHHhhhcCCCCC-------CCCCccccCccCcccCCchhhHhhhh
Q psy12016          4 LFFLEYLSVWQN--DSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQ-------NLDGLFSCDVCGKHYKYKKGLGRHKR   74 (111)
Q Consensus         4 ~~~l~~~~~~~~--~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~-------~~~~~~~c~~c~~~~~~~~~l~~h~~   74 (111)
                      +..|++|+.-..  -+..|.|..|..+|.....|.+|+.+|......       ..-..|+|.+|+++|..+-.|+.|++
T Consensus       223 ltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlR  302 (1007)
T KOG3623|consen  223 LTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLR  302 (1007)
T ss_pred             HHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhhe
Confidence            566777765442  244588999999999999999999988644332       11234899999999999999999999


Q ss_pred             hhcCCCCccccCCCCcccccchhHHHHHH
Q psy12016         75 YECGQEPKYECDQCPHRTKHISSLKKHMA  103 (111)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (111)
                      .|.|++ ||.|+.|.+.|...+.+..|+.
T Consensus       303 IHSGEK-PfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  303 IHSGEK-PFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             eecCCC-CcCCcccccccccCCccccccc
Confidence            999988 9999999999999999988874

>KOG3608|consensus

Probab=99.52  E-value=3.1e-14  Score=86.97  Aligned_cols=104  Identities=19%  Similarity=0.411  Sum_probs=84.7

Q ss_pred             HHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCC----------------------CCccccCccC
Q psy12016          3 FLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNL----------------------DGLFSCDVCG   60 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~----------------------~~~~~c~~c~   60 (111)
                      ...-|++|.+.|+.++...|+.|+..|..+..|-.|.+..+.-.....                      .+-|+|+.|+
T Consensus       191 ~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCd  270 (467)
T KOG3608|consen  191 NKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCD  270 (467)
T ss_pred             cHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccc
Confidence            456789999999999999999999999999999888765443322211                      2347899999


Q ss_pred             cccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhh
Q psy12016         61 KHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        61 ~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      .....++.|..|++..+.+-+||+|+.|+..+...++|.+|...|.
T Consensus       271 mtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS  316 (467)
T KOG3608|consen  271 MTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS  316 (467)
T ss_pred             cCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc
Confidence            9999999999998887766669999999999999999999988776

>KOG3576|consensus

Probab=99.52  E-value=5.7e-15  Score=84.05  Aligned_cols=101  Identities=21%  Similarity=0.408  Sum_probs=88.5

Q ss_pred             HHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCC----
Q psy12016          4 LFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ----   79 (111)
Q Consensus         4 ~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~----   79 (111)
                      -+.|..|..-|+..+.+.|..||+.|...-+|.+|+++|+|.++      |.|..|+++|...-.|..|.+.-++.    
T Consensus       130 QRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrp------ykc~~c~kaftqrcsleshl~kvhgv~~~y  203 (267)
T KOG3576|consen  130 QRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP------YKCSLCEKAFTQRCSLESHLKKVHGVQHQY  203 (267)
T ss_pred             HHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccc------cchhhhhHHHHhhccHHHHHHHHcCchHHH
Confidence            46788899999999999999999999999999999999999999      99999999999999999998876653    


Q ss_pred             ------CCccccCCCCcccccchhHHHHHHHhhCCCC
Q psy12016         80 ------EPKYECDQCPHRTKHISSLKKHMALKHGVES  110 (111)
Q Consensus        80 ------~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~  110 (111)
                            .+.|.|+.||.+-.....+-.|++.++...|
T Consensus       204 aykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  204 AYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             HHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence                  1268999999888888888889988876443

>PHA00733 hypothetical protein

Probab=99.34  E-value=1.5e-12  Score=70.65  Aligned_cols=84  Identities=19%  Similarity=0.279  Sum_probs=67.8

Q ss_pred             CCCCceecCCCcccccchhHHHHH--Hhh---hcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCC
Q psy12016         15 NDSGMFTCDVCFKEYKYKRGLVRH--KKN---SCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCP   89 (111)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h--~~~---~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~   89 (111)
                      ...+++.|..|...|.....|..+  +..   +.+..+      |.|+.|++.|.....|..|++.+  .. ++.|..|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kP------y~C~~Cgk~Fss~s~L~~H~r~h--~~-~~~C~~Cg  106 (128)
T PHA00733         36 PEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSP------YVCPLCLMPFSSSVSLKQHIRYT--EH-SKVCPVCG  106 (128)
T ss_pred             hhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCC------ccCCCCCCcCCCHHHHHHHHhcC--Cc-CccCCCCC
Confidence            446778999999888887777665  222   122344      99999999999999999999875  34 79999999


Q ss_pred             cccccchhHHHHHHHhhC
Q psy12016         90 HRTKHISSLKKHMALKHG  107 (111)
Q Consensus        90 ~~f~~~~~l~~H~~~~~~  107 (111)
                      +.|.....|..|+...|+
T Consensus       107 K~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        107 KEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CccCCHHHHHHHHHHhcC
Confidence            999999999999987765

>KOG3608|consensus

Probab=99.23  E-value=3.3e-11  Score=73.98  Aligned_cols=91  Identities=21%  Similarity=0.488  Sum_probs=47.3

Q ss_pred             HHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhh-hcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCC
Q psy12016          3 FLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKN-SCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEP   81 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   81 (111)
                      +-..|+.|.+.|.  .-|.|+.|+.+....+.|.+|++. |...++      |+|+.|++.+.+...|..|..+|. +. 
T Consensus       249 TeklL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkp------fKCd~Cd~~c~~esdL~kH~~~HS-~~-  318 (467)
T KOG3608|consen  249 TEKLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKP------FKCDECDTRCVRESDLAKHVQVHS-KT-  318 (467)
T ss_pred             HHHHHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhccCCC------ccccchhhhhccHHHHHHHHHhcc-cc-
Confidence            3344555555443  345566666666666666666543 333344      666666666666666666655543 22 


Q ss_pred             ccccCC--CCcccccchhHHHHHH
Q psy12016         82 KYECDQ--CPHRTKHISSLKKHMA  103 (111)
Q Consensus        82 ~~~C~~--C~~~f~~~~~l~~H~~  103 (111)
                      .|.|..  |...+.+...+++|.+
T Consensus       319 ~y~C~h~~C~~s~r~~~q~~~H~~  342 (467)
T KOG3608|consen  319 VYQCEHPDCHYSVRTYTQMRRHFL  342 (467)
T ss_pred             ceecCCCCCcHHHHHHHHHHHHHH
Confidence            344443  4444444444444443

>PHA02768 hypothetical protein; Provisional

Probab=99.05  E-value=8.4e-11  Score=53.92  Aligned_cols=41  Identities=20%  Similarity=0.489  Sum_probs=21.3

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchh
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISS   97 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~   97 (111)
                      |.|+.||+.|.....|..|+++|.  + +++|..|++.|...+.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k-~~kc~~C~k~f~~~s~   46 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--T-NLKLSNCKRISLRTGE   46 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--C-cccCCcccceecccce
Confidence            455555555555555555555553  2 4555555555544443

>PHA02768 hypothetical protein; Provisional

Probab=99.05  E-value=1.2e-10  Score=53.45  Aligned_cols=44  Identities=11%  Similarity=0.286  Sum_probs=39.0

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhH
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLG   70 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~   70 (111)
                      -|.|+.||+.|.....|..|+++|+  .+      +.|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~------~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TN------LKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--Cc------ccCCcccceecccceeE
Confidence            3789999999999999999999998  45      89999999998776654

>PHA00733 hypothetical protein

Probab=99.01  E-value=1e-09  Score=59.62  Aligned_cols=64  Identities=19%  Similarity=0.387  Sum_probs=52.1

Q ss_pred             HHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcC
Q psy12016          6 FLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus         6 ~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      +|..+...+ .++||.|+.|++.|.....|..|+..+.  .+      +.|..|++.|.....|..|+...++
T Consensus        61 ~l~~~~~~~-~~kPy~C~~Cgk~Fss~s~L~~H~r~h~--~~------~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         61 YLYKLLTSK-AVSPYVCPLCLMPFSSSVSLKQHIRYTE--HS------KVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             HHHhhcccC-CCCCccCCCCCCcCCCHHHHHHHHhcCC--cC------ccCCCCCCccCCHHHHHHHHHHhcC
Confidence            345554444 4779999999999999999999988652  34      8999999999999999999886543

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.98  E-value=1.5e-09  Score=71.22  Aligned_cols=63  Identities=21%  Similarity=0.511  Sum_probs=32.6

Q ss_pred             CceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCccc
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRT   92 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f   92 (111)
                      ..+.|+.|++.|. ...+..|+..+.  .+      +.|+ |+..+ ....|..|+.++.+.+ ++.|..|+..+
T Consensus       452 ~H~~C~~Cgk~f~-~s~LekH~~~~H--kp------v~Cp-Cg~~~-~R~~L~~H~~thCp~K-pi~C~fC~~~v  514 (567)
T PLN03086        452 NHVHCEKCGQAFQ-QGEMEKHMKVFH--EP------LQCP-CGVVL-EKEQMVQHQASTCPLR-LITCRFCGDMV  514 (567)
T ss_pred             cCccCCCCCCccc-hHHHHHHHHhcC--CC------ccCC-CCCCc-chhHHHhhhhccCCCC-ceeCCCCCCcc
Confidence            3345555655553 344555555542  33      5555 55433 3345555555555544 55566665555

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.93  E-value=4.1e-09  Score=69.21  Aligned_cols=90  Identities=20%  Similarity=0.380  Sum_probs=72.4

Q ss_pred             HHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCC----------chhhHhhhh
Q psy12016          5 FFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKY----------KKGLGRHKR   74 (111)
Q Consensus         5 ~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~----------~~~l~~h~~   74 (111)
                      ..|+.|...+.  .++.|+ |+..+ .+..|..|+.++++.++      +.|..|+..+..          ...|..|..
T Consensus       466 s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kp------i~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~  535 (567)
T PLN03086        466 GEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRL------ITCRFCGDMVQAGGSAMDVRDRLRGMSEHES  535 (567)
T ss_pred             HHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCc------eeCCCCCCccccCccccchhhhhhhHHHHHH
Confidence            45788888874  689999 99755 66899999999999999      999999998852          346888888


Q ss_pred             hhcCCCCccccCCCCcccccchhHHHHHHHhhC
Q psy12016         75 YECGQEPKYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      .. +.+ ++.|..|++.+..+ .+..|+...|.
T Consensus       536 ~C-G~r-t~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        536 IC-GSR-TAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             hc-CCc-ceEccccCCeeeeh-hHHHHHHHhhc
Confidence            74 666 99999999888665 67778876654

>PHA00616 hypothetical protein

Probab=98.90  E-value=7.5e-10  Score=48.48  Aligned_cols=29  Identities=17%  Similarity=0.364  Sum_probs=17.0

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVES  110 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek~  110 (111)
                      ||.|..||+.|...+++..|++.+||++|
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~   29 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK   29 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence            35555666666666666666666665554

>KOG3993|consensus

Probab=98.84  E-value=4.3e-10  Score=70.51  Aligned_cols=25  Identities=20%  Similarity=0.546  Sum_probs=21.3

Q ss_pred             ccccCCCCcccccchhHHHHHHHhh
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      .|.|..|++.|.....|++|+.+|+
T Consensus       356 i~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  356 IFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             eeecHHhhhhhHHHHHHHHhHHhhh
Confidence            5788889999998889999987776

>KOG3993|consensus

Probab=98.80  E-value=2.7e-09  Score=67.07  Aligned_cols=77  Identities=21%  Similarity=0.333  Sum_probs=61.6

Q ss_pred             ChHHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC-----------C----------------CCCCc
Q psy12016          1 MFFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP-----------Q----------------NLDGL   53 (111)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~-----------~----------------~~~~~   53 (111)
                      |++.+.|-.|.-....-.-|.|++|+++|.-..+|..|.+.|-....           .                +.+++
T Consensus       277 YeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi  356 (500)
T KOG3993|consen  277 YEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGI  356 (500)
T ss_pred             hhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCce
Confidence            46677788887776666779999999999999999999987732211           0                23568


Q ss_pred             cccCccCcccCCchhhHhhhhhhc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYEC   77 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~   77 (111)
                      |.|..|++.|.+...|..|+.+|+
T Consensus       357 ~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  357 FSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             eecHHhhhhhHHHHHHHHhHHhhh
Confidence            999999999999999999977765

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.79  E-value=4.9e-09  Score=41.34  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=17.3

Q ss_pred             HHhhhhhcCCCCceecCCCccccc
Q psy12016          7 LEYLSVWQNDSGMFTCDVCFKEYK   30 (111)
Q Consensus         7 l~~~~~~~~~~~~~~C~~C~~~f~   30 (111)
                      |+.|+++|++++||.|+.|++.|.
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeC
Confidence            566777777777777777777764

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.78  E-value=4.3e-09  Score=41.51  Aligned_cols=24  Identities=33%  Similarity=0.697  Sum_probs=16.5

Q ss_pred             hHhhhhhhcCCCCccccCCCCcccc
Q psy12016         69 LGRHKRYECGQEPKYECDQCPHRTK   93 (111)
Q Consensus        69 l~~h~~~~~~~~~~~~C~~C~~~f~   93 (111)
                      |..|+++|.+++ ||.|+.|++.|.
T Consensus         2 l~~H~~~H~~~k-~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEK-PYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSS-SEEESSSSEEES
T ss_pred             HHHHhhhcCCCC-CCCCCCCcCeeC
Confidence            556777776665 777777777664

...

>PHA00616 hypothetical protein

Probab=98.57  E-value=3.2e-08  Score=43.36  Aligned_cols=29  Identities=24%  Similarity=0.461  Sum_probs=19.4

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      ||.|+.||+.|..+.++..|++.|+++.+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~   29 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK   29 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence            45666666666666666666666666655

>PHA00732 hypothetical protein

Probab=98.49  E-value=1.4e-07  Score=47.07  Aligned_cols=46  Identities=28%  Similarity=0.511  Sum_probs=36.0

Q ss_pred             ceecCCCcccccchhHHHHHHhh-hcCCCCCCCCCccccCccCcccCCchhhHhhhhhh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKN-SCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYE   76 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~   76 (111)
                      ||.|..|++.|.....|..|++. |.   +      +.|+.|++.|.   .+..|.++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~------~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---L------TKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---C------CccCCCCCEeC---Chhhhhccc
Confidence            57899999999999999999874 43   2      57999999887   356676554

>PHA00732 hypothetical protein

Probab=98.48  E-value=1.3e-07  Score=47.17  Aligned_cols=46  Identities=24%  Similarity=0.477  Sum_probs=37.4

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHh
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALK  105 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (111)
                      |.|..|++.|.....|..|++.++.   ++.|+.|++.|.   .+..|..+.
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhccc
Confidence            7899999999999999999985322   468999999997   467776543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.47  E-value=3.4e-07  Score=42.46  Aligned_cols=51  Identities=27%  Similarity=0.514  Sum_probs=32.8

Q ss_pred             cccCccCcccCCchhhHhhhhhhcC-CCCccccCCCCcccccchhHHHHHHHhhC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECG-QEPKYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~-~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      |.|+.|++ ......|..|....+. +.+.+.|+.|...+.  .+|..|+...|+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            77888887 4445667777555443 333677888876543  377778777664

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.35  E-value=3.7e-07  Score=34.75  Aligned_cols=23  Identities=35%  Similarity=0.651  Sum_probs=18.5

Q ss_pred             cccCCCCcccccchhHHHHHHHh
Q psy12016         83 YECDQCPHRTKHISSLKKHMALK  105 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~  105 (111)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            56888888888888888888763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.25  E-value=9.3e-07  Score=33.77  Aligned_cols=24  Identities=29%  Similarity=0.692  Sum_probs=18.0

Q ss_pred             cccCCCCcccccchhHHHHHHHhh
Q psy12016         83 YECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      |.|+.|+..|.....|..|+.++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            578888888888888888888764

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.25  E-value=1.2e-06  Score=33.31  Aligned_cols=23  Identities=30%  Similarity=0.723  Sum_probs=17.5

Q ss_pred             eecCCCcccccchhHHHHHHhhh
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      |.|+.|++.|..+..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            56788888888888888887653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.19  E-value=1.8e-06  Score=38.74  Aligned_cols=31  Identities=19%  Similarity=0.464  Sum_probs=23.0

Q ss_pred             CCccccCCCCcccccchhHHHHHHHhhCCCC
Q psy12016         80 EPKYECDQCPHRTKHISSLKKHMALKHGVES  110 (111)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~  110 (111)
                      .+|-.|++|+..+....+|++|+.+.|+-||
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3388999999999999999999999998886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.15  E-value=9.4e-07  Score=34.98  Aligned_cols=26  Identities=27%  Similarity=0.636  Sum_probs=19.4

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      ||.|..|++.|.....|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            46788888888888888888776653

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.04  E-value=1.5e-05  Score=36.89  Aligned_cols=51  Identities=25%  Similarity=0.408  Sum_probs=36.3

Q ss_pred             ceecCCCcccccchhHHHHHHhh-hcCCCCCCCCCccccCccCcccCCchhhHhhhhhhc
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKN-SCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYEC   77 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   77 (111)
                      .|.|+.|++ ..+...|..|... |..+..     .+.|+.|...+.  ..+..|+...+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~-----~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESK-----NVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCC-----CccCCCchhhhh--hHHHHHHHHhc
Confidence            488999999 5566789999755 433221     289999997644  47888887654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.04  E-value=4.2e-06  Score=33.04  Aligned_cols=25  Identities=36%  Similarity=0.749  Sum_probs=18.5

Q ss_pred             ceecCCCcccccchhHHHHHHhhhc
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~   43 (111)
                      ||.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5677888888888877777776553

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.92  E-value=1.6e-05  Score=30.15  Aligned_cols=23  Identities=30%  Similarity=0.722  Sum_probs=15.4

Q ss_pred             eecCCCcccccchhHHHHHHhhh
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      |.|+.|+..|.....|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            56777777777777777777654

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.84  E-value=1.4e-05  Score=41.40  Aligned_cols=73  Identities=21%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             ecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHH
Q psy12016         21 TCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKK  100 (111)
Q Consensus        21 ~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~  100 (111)
                      .|..|+..|.....+..|+....+...         +.. ..+.....+....+.... . .+.|..|++.|.+...|..
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~---------~~~-~~l~~~~~~~~~~~~~~~-~-~~~C~~C~~~f~s~~~l~~   68 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDI---------PDQ-KYLVDPNRLLNYLRKKVK-E-SFRCPYCNKTFRSREALQE   68 (100)
T ss_dssp             -----------------------------------------------------------S-SEEBSSSS-EESSHHHHHH
T ss_pred             Ccccccccccccccccccccccccccc---------ccc-cccccccccccccccccC-C-CCCCCccCCCCcCHHHHHH
Confidence            488999999999999999865443211         110 111122222222222211 2 5889999999999999999


Q ss_pred             HHHHh
Q psy12016        101 HMALK  105 (111)
Q Consensus       101 H~~~~  105 (111)
                      |++.+
T Consensus        69 Hm~~~   73 (100)
T PF12756_consen   69 HMRSK   73 (100)
T ss_dssp             HHHHT
T ss_pred             HHcCc
Confidence            98754

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.79  E-value=6.6e-06  Score=50.65  Aligned_cols=70  Identities=27%  Similarity=0.511  Sum_probs=43.1

Q ss_pred             CCceecCC--CcccccchhHHHHHHhh-hcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccc
Q psy12016         17 SGMFTCDV--CFKEYKYKRGLVRHKKN-SCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTK   93 (111)
Q Consensus        17 ~~~~~C~~--C~~~f~~~~~l~~h~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~   93 (111)
                      ++||.|++  |++.+.....|+=|+.. |...+.      ..         .+ ....+.......+ ||+|++|++.++
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~------~~---------~p-~p~~~~~F~~~~K-PYrCevC~KRYK  409 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKL------HE---------NP-SPEKMNIFSAKDK-PYRCEVCDKRYK  409 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCccc------CC---------CC-CccccccccccCC-ceeccccchhhc
Confidence            47888887  88888888888777542 211111      00         00 0011111122334 999999999999


Q ss_pred             cchhHHHHHH
Q psy12016         94 HISSLKKHMA  103 (111)
Q Consensus        94 ~~~~l~~H~~  103 (111)
                      +...|+-|.+
T Consensus       410 NlNGLKYHr~  419 (423)
T COG5189         410 NLNGLKYHRK  419 (423)
T ss_pred             cCccceeccc
Confidence            9999988754

>smart00355 ZnF_C2H2 zinc finger

Probab=97.65  E-value=5.7e-05  Score=29.02  Aligned_cols=24  Identities=38%  Similarity=0.664  Sum_probs=17.2

Q ss_pred             cccCCCCcccccchhHHHHHHHhh
Q psy12016         83 YECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      +.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            457777777777777777777543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.53  E-value=0.00011  Score=28.02  Aligned_cols=24  Identities=38%  Similarity=0.766  Sum_probs=16.9

Q ss_pred             cccCCCCcccccchhHHHHHHHhhC
Q psy12016         83 YECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      |.|..|+.... ...|.+|++.+++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            57888887776 7788888887764

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.45  E-value=0.00023  Score=32.12  Aligned_cols=30  Identities=23%  Similarity=0.297  Sum_probs=14.9

Q ss_pred             CCCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         16 DSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      .+.|..|++|+..+....+|.+|+....+.
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            445566666666666666666666554443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.41  E-value=0.00015  Score=27.85  Aligned_cols=23  Identities=30%  Similarity=0.761  Sum_probs=17.9

Q ss_pred             eecCCCcccccchhHHHHHHhhh
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      |.|..|+..|.....+..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56888888888888888887643

>smart00355 ZnF_C2H2 zinc finger

Probab=97.40  E-value=0.00019  Score=27.43  Aligned_cols=23  Identities=30%  Similarity=0.603  Sum_probs=15.3

Q ss_pred             eecCCCcccccchhHHHHHHhhh
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      |.|..|++.|.....+..|+..|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            35667777777777777776644

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.35  E-value=0.00012  Score=28.21  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=17.0

Q ss_pred             cccCCCCcccccchhHHHHHHHh
Q psy12016         83 YECDQCPHRTKHISSLKKHMALK  105 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~  105 (111)
                      |.|..|+..|.+...+..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            46778888888888888777543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.00  E-value=0.00033  Score=27.51  Aligned_cols=22  Identities=36%  Similarity=0.685  Sum_probs=16.7

Q ss_pred             eecCCCcccccchhHHHHHHhh
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKKN   41 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~   41 (111)
                      |.|..|++.|.....+..|+.+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5688888888888888777654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.99  E-value=0.00013  Score=28.73  Aligned_cols=21  Identities=33%  Similarity=0.678  Sum_probs=13.8

Q ss_pred             cccCCCCcccccchhHHHHHH
Q psy12016         83 YECDQCPHRTKHISSLKKHMA  103 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~  103 (111)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            456777777777666666654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.87  E-value=0.0016  Score=24.65  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=13.8

Q ss_pred             eecCCCcccccchhHHHHHHhhh
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      |.|+.|+.... ...|.+|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            56777777666 66777776654

>PRK04860 hypothetical protein; Provisional

Probab=96.82  E-value=0.0011  Score=37.58  Aligned_cols=38  Identities=24%  Similarity=0.585  Sum_probs=31.0

Q ss_pred             ccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccc
Q psy12016         53 LFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHI   95 (111)
Q Consensus        53 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~   95 (111)
                      .|.|. |+.   ....+..|.+++.++. +|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~-~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEA-VYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCc-cEECCCCCceeEEe
Confidence            38997 887   5566788999998877 89999999888654

>PRK04860 hypothetical protein; Provisional

Probab=96.76  E-value=0.001  Score=37.74  Aligned_cols=26  Identities=23%  Similarity=0.615  Sum_probs=16.5

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +|.|. |+.   ....+++|.+++.++++|
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~Y  144 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVY  144 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccE
Confidence            56666 665   445566677777776665

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.50  E-value=0.0029  Score=24.38  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=14.6

Q ss_pred             cccCCCCcccccchhHHHHHHHh
Q psy12016         83 YECDQCPHRTKHISSLKKHMALK  105 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~  105 (111)
                      ..|+.|++.| ....|..|+++.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~C   24 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKIC   24 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHhc
Confidence            4577788887 455667776653

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.35  E-value=0.0043  Score=25.67  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=17.5

Q ss_pred             ceecCCCcccccchhHHHHHHhh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKN   41 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~   41 (111)
                      +|.|..|+..|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            57788888888877777777653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.18  E-value=0.0037  Score=25.89  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=17.6

Q ss_pred             ccccCCCCcccccchhHHHHHH
Q psy12016         82 KYECDQCPHRTKHISSLKKHMA  103 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (111)
                      +|.|..|+..|.....+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            5778888888888878877764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1146|consensus

Probab=95.55  E-value=0.0092  Score=43.70  Aligned_cols=78  Identities=19%  Similarity=0.326  Sum_probs=43.0

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhh-cCCCCccccCCCCcccccc
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYE-CGQEPKYECDQCPHRTKHI   95 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~-~~~~~~~~C~~C~~~f~~~   95 (111)
                      .+.+.|+.|++.|.....|..|++.-+.+..      .  ..|.. +.....+ ....+. .+.. +|.|..|...+...
T Consensus       463 ~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~------~--~~c~~-gq~~~~~-arg~~~~~~~~-p~~C~~C~~stttn  531 (1406)
T KOG1146|consen  463 FKTLKCPKCNWHYKLAQTLGVHMRSKHPESQ------S--AYCKA-GQNHPRL-ARGEVYRCPGK-PYPCRACNYSTTTN  531 (1406)
T ss_pred             cccccCCccchhhhhHHHhhhcccccccccc------h--hHhHh-ccccccc-cccccccCCCC-cccceeeeeeeecc
Confidence            3556777777777777777777665332211      0  11110 0000000 001111 1223 88999999999999


Q ss_pred             hhHHHHHHHh
Q psy12016         96 SSLKKHMALK  105 (111)
Q Consensus        96 ~~l~~H~~~~  105 (111)
                      .+|..|+...
T Consensus       532 g~LsihlqS~  541 (1406)
T KOG1146|consen  532 GNLSIHLQSD  541 (1406)
T ss_pred             hHHHHHHHHH
Confidence            9999998643

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=94.90  E-value=0.017  Score=26.61  Aligned_cols=29  Identities=14%  Similarity=0.482  Sum_probs=23.7

Q ss_pred             CCCCceecCCCcccccchhHHHHHHhhhc
Q psy12016         15 NDSGMFTCDVCFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   43 (111)
                      -++..+.|+.|+..|....++.+|.....
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            46777899999999999999999975433

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.70  E-value=0.026  Score=23.23  Aligned_cols=24  Identities=29%  Similarity=0.816  Sum_probs=13.6

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      |.|..||..+....            . ++.|+.|+.
T Consensus         2 ~~C~~CGy~y~~~~------------~-~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------A-PWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------C-CCcCcCCCC
Confidence            56667765544321            2 667777763

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=94.32  E-value=0.026  Score=26.01  Aligned_cols=25  Identities=16%  Similarity=0.357  Sum_probs=15.8

Q ss_pred             ccccCCCCcccccchhHHHHHHHhh
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      -+.|+.|+..|...-++.+|..-.|
T Consensus        17 ~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          17 FLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             eeeCCchhHHHHHhHHHHHHhhHHh
Confidence            5567777777766666666655443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.04  E-value=0.095  Score=26.82  Aligned_cols=23  Identities=30%  Similarity=0.777  Sum_probs=15.6

Q ss_pred             cccCccCcccCCchhhHhhhhhh
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYE   76 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~   76 (111)
                      +.|..|+..|.+...|..|++.+
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCccCCCCcCHHHHHHHHcCc
Confidence            67777777777777777777654

>KOG4173|consensus

Probab=92.87  E-value=0.058  Score=31.83  Aligned_cols=79  Identities=23%  Similarity=0.391  Sum_probs=56.4

Q ss_pred             ceecCC--CcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhc---------CCCCccccC-
Q psy12016         19 MFTCDV--CFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYEC---------GQEPKYECD-   86 (111)
Q Consensus        19 ~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~---------~~~~~~~C~-   86 (111)
                      .+.|+.  |.+.|.....+..|..+..+         ..|..|.+.|+....|..|..-.+         .+...|.|- 
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~---------~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~Clv  149 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHG---------NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLV  149 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhccc---------chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence            356776  66777777777777544333         589999999999988888855433         223368884 


Q ss_pred             -CCCcccccchhHHHHHHHhh
Q psy12016         87 -QCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        87 -~C~~~f~~~~~l~~H~~~~~  106 (111)
                       .|+..|......+.|+..-|
T Consensus       150 EgCt~KFkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  150 EGCTEKFKTSRDRKDHMIRMH  170 (253)
T ss_pred             HhhhhhhhhhhhhhhHHHHhc
Confidence             59999999888888876544

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=92.73  E-value=0.085  Score=30.22  Aligned_cols=23  Identities=30%  Similarity=0.777  Sum_probs=17.6

Q ss_pred             ccccCccCcccCCchhhHhhhhhhcCCCCccccCCCC
Q psy12016         53 LFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCP   89 (111)
Q Consensus        53 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~   89 (111)
                      .|.|++||..             +.++. |..|+.||
T Consensus       134 ~~vC~vCGy~-------------~~ge~-P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYT-------------HEGEA-PEVCPICG  156 (166)
T ss_pred             EEEcCCCCCc-------------ccCCC-CCcCCCCC
Confidence            3999999876             23433 89999998

>KOG2893|consensus

Probab=92.61  E-value=0.045  Score=33.06  Aligned_cols=47  Identities=30%  Similarity=0.561  Sum_probs=34.4

Q ss_pred             eecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhh-hhhh
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRH-KRYE   76 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h-~~~~   76 (111)
                      .+|..|++.|....-|.+|++.    +.      |+|..|-+...+...|..| +++|
T Consensus        11 pwcwycnrefddekiliqhqka----kh------fkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQKA----KH------FKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             ceeeecccccchhhhhhhhhhh----cc------ceeeeehhhhccCCCceeehhhhh
Confidence            3688999999999988888764    34      8999998666665555444 4444

>KOG2893|consensus

Probab=92.17  E-value=0.037  Score=33.43  Aligned_cols=41  Identities=22%  Similarity=0.515  Sum_probs=34.7

Q ss_pred             cCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHH
Q psy12016         56 CDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKH  101 (111)
Q Consensus        56 c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H  101 (111)
                      |=.|++.|.....|.+|++.    + .|+|..|-+.+.+.-.|..|
T Consensus        13 cwycnrefddekiliqhqka----k-hfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA----K-HFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhhh----c-cceeeeehhhhccCCCceee
Confidence            66799999999999988874    3 89999999888777777766

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.17  E-value=0.13  Score=21.30  Aligned_cols=24  Identities=29%  Similarity=0.648  Sum_probs=16.3

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      |.|..||..+...             ..|..|+.|+.
T Consensus         3 ~~C~~CG~i~~g~-------------~~p~~CP~Cg~   26 (34)
T cd00729           3 WVCPVCGYIHEGE-------------EAPEKCPICGA   26 (34)
T ss_pred             EECCCCCCEeECC-------------cCCCcCcCCCC
Confidence            7888888764321             22678888874

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2231|consensus

Probab=91.95  E-value=0.52  Score=32.97  Aligned_cols=48  Identities=23%  Similarity=0.472  Sum_probs=27.2

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCC------CcccccchhHHHHHHHhh
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC------PHRTKHISSLKKHMALKH  106 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C------~~~f~~~~~l~~H~~~~~  106 (111)
                      -.|..|...|.....+..|++..     .|-|..|      +..|.....|..|-+..|
T Consensus       183 p~C~~C~~~fld~~el~rH~~~~-----h~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  183 PLCKFCHERFLDDDELYRHLRFD-----HEFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             ccchhhhhhhccHHHHHHhhccc-----eeheeecCcccccchhcccchHHHHHhhhcC
Confidence            35666666666666666666654     3333333      344555566666655444

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.79  E-value=0.056  Score=32.31  Aligned_cols=12  Identities=17%  Similarity=0.528  Sum_probs=7.8

Q ss_pred             cccCCCCccccc
Q psy12016         83 YECDQCPHRTKH   94 (111)
Q Consensus        83 ~~C~~C~~~f~~   94 (111)
                      ..|+.||.++..
T Consensus        49 ~vCP~CgyA~~~   60 (214)
T PF09986_consen   49 WVCPHCGYAAFE   60 (214)
T ss_pred             EECCCCCCcccc
Confidence            467778766543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=91.61  E-value=0.059  Score=34.77  Aligned_cols=54  Identities=22%  Similarity=0.501  Sum_probs=32.7

Q ss_pred             cccCccCcccCCchhhHhhhh--hhcCC--CCccccC--CCCcccccchhHHHHHHHhhCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKR--YECGQ--EPKYECD--QCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~--~~~~~--~~~~~C~--~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      +.|..|...+.....+..|.+  .|.++  + ++.|.  .|++.|.....+..|..++.+-
T Consensus       290 ~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  349 (467)
T COG5048         290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLK-PFSCPYSLCGKLFSRNDALKRHILLHTSI  349 (467)
T ss_pred             CCCccccCCccccccccccccccccccccCC-ceeeeccCCCccccccccccCCcccccCC
Confidence            455666666666666666666  45555  4 66666  5666666666666665555543

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=91.20  E-value=0.46  Score=25.17  Aligned_cols=26  Identities=31%  Similarity=0.689  Sum_probs=22.8

Q ss_pred             cccc----CCCCcccccchhHHHHHHHhhC
Q psy12016         82 KYEC----DQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        82 ~~~C----~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      -|.|    ..|+....+...+..|.+..||
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            4789    8999999999999999988875

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=91.13  E-value=0.3  Score=27.81  Aligned_cols=35  Identities=17%  Similarity=0.551  Sum_probs=23.6

Q ss_pred             CCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccC
Q psy12016         15 NDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYK   64 (111)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~   64 (111)
                      .....|.|+.|+..|+....+.         ..      |.|+.||....
T Consensus       105 ~~~~~Y~Cp~c~~r~tf~eA~~---------~~------F~Cp~Cg~~L~  139 (158)
T TIGR00373       105 TNNMFFICPNMCVRFTFNEAME---------LN------FTCPRCGAMLD  139 (158)
T ss_pred             cCCCeEECCCCCcEeeHHHHHH---------cC------CcCCCCCCEee
Confidence            3455678888888777766553         13      88888886543

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=90.82  E-value=0.21  Score=26.60  Aligned_cols=13  Identities=15%  Similarity=0.391  Sum_probs=6.7

Q ss_pred             ccccCCCCccccc
Q psy12016         82 KYECDQCPHRTKH   94 (111)
Q Consensus        82 ~~~C~~C~~~f~~   94 (111)
                      |..|+.||..|..
T Consensus        26 PivCP~CG~~~~~   38 (108)
T PF09538_consen   26 PIVCPKCGTEFPP   38 (108)
T ss_pred             CccCCCCCCccCc
Confidence            5555555555433

The function of members of this family is unknown.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=90.77  E-value=0.11  Score=31.02  Aligned_cols=28  Identities=29%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      .|.|..|++.|....-+++|+..-|.|+
T Consensus        77 K~~C~lc~KlFkg~eFV~KHI~nKH~e~  104 (214)
T PF04959_consen   77 KWRCPLCGKLFKGPEFVRKHIFNKHPEK  104 (214)
T ss_dssp             EEEE-SSS-EESSHHHHHHHHHHH-HHH
T ss_pred             EECCCCCCcccCChHHHHHHHhhcCHHH
Confidence            6889999999998888899988777653

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=90.72  E-value=0.18  Score=23.65  Aligned_cols=31  Identities=26%  Similarity=0.670  Sum_probs=18.7

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      |.|+.||......     -.+-...+. +|.|+.||.
T Consensus        28 F~CPnCGe~~I~R-----c~~CRk~g~-~Y~Cp~CGF   58 (61)
T COG2888          28 FPCPNCGEVEIYR-----CAKCRKLGN-PYRCPKCGF   58 (61)
T ss_pred             eeCCCCCceeeeh-----hhhHHHcCC-ceECCCcCc
Confidence            8899999553322     112222235 899999973

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=90.30  E-value=0.39  Score=27.96  Aligned_cols=35  Identities=20%  Similarity=0.627  Sum_probs=23.7

Q ss_pred             CCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCC
Q psy12016         16 DSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKY   65 (111)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~   65 (111)
                      ....|.|+.|+..|+....+.         ..      |.|+.||.....
T Consensus       114 ~~~~Y~Cp~C~~rytf~eA~~---------~~------F~Cp~Cg~~L~~  148 (178)
T PRK06266        114 NNMFFFCPNCHIRFTFDEAME---------YG------FRCPQCGEMLEE  148 (178)
T ss_pred             CCCEEECCCCCcEEeHHHHhh---------cC------CcCCCCCCCCee
Confidence            345688988988877765432         13      889999866544

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=90.00  E-value=0.36  Score=21.28  Aligned_cols=12  Identities=25%  Similarity=0.719  Sum_probs=6.9

Q ss_pred             eecCCCcccccc
Q psy12016         20 FTCDVCFKEYKY   31 (111)
Q Consensus        20 ~~C~~C~~~f~~   31 (111)
                      |.|..|+..|..
T Consensus         3 Y~C~~Cg~~~~~   14 (44)
T smart00659        3 YICGECGRENEI   14 (44)
T ss_pred             EECCCCCCEeec
Confidence            556666665543

present in RNA polymerase I, II and III

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=89.71  E-value=0.36  Score=20.34  Aligned_cols=33  Identities=21%  Similarity=0.556  Sum_probs=16.5

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCccc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRT   92 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f   92 (111)
                      ..|+.|+..|.....-.     ..++. ..+|..|+..|
T Consensus         3 i~CP~C~~~f~v~~~~l-----~~~~~-~vrC~~C~~~f   35 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDKL-----PAGGR-KVRCPKCGHVF   35 (37)
T ss_pred             EECCCCCceEEcCHHHc-----ccCCc-EEECCCCCcEe
Confidence            45666666655554311     11223 55666666555

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=89.71  E-value=0.15  Score=23.07  Aligned_cols=13  Identities=15%  Similarity=0.690  Sum_probs=8.4

Q ss_pred             eecCCCcccccch
Q psy12016         20 FTCDVCFKEYKYK   32 (111)
Q Consensus        20 ~~C~~C~~~f~~~   32 (111)
                      |.|..|+..|...
T Consensus         6 y~C~~Cg~~fe~~   18 (52)
T TIGR02605         6 YRCTACGHRFEVL   18 (52)
T ss_pred             EEeCCCCCEeEEE
Confidence            5677777766543

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=89.42  E-value=0.4  Score=20.11  Aligned_cols=13  Identities=15%  Similarity=0.644  Sum_probs=6.2

Q ss_pred             cccCccCcccCCc
Q psy12016         54 FSCDVCGKHYKYK   66 (111)
Q Consensus        54 ~~c~~c~~~~~~~   66 (111)
                      +.|+.|+..|...
T Consensus         3 ~~CP~C~~~~~v~   15 (38)
T TIGR02098         3 IQCPNCKTSFRVV   15 (38)
T ss_pred             EECCCCCCEEEeC
Confidence            3455555544444

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=89.38  E-value=0.15  Score=32.98  Aligned_cols=62  Identities=26%  Similarity=0.443  Sum_probs=50.9

Q ss_pred             CceecCCCcccccchhHHHHHHh--hhcCC--CCCCCCCccccC--ccCcccCCchhhHhhhhhhcCCCCccccC
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKK--NSCKQ--KPQNLDGLFSCD--VCGKHYKYKKGLGRHKRYECGQEPKYECD   86 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~--~~~~~--~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   86 (111)
                      .++.|..|...|.....+..|..  .|.++  .+      +.|+  .|+..|.....+..|...+.+.. ++.+.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  355 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKP------FSCPYSLCGKLFSRNDALKRHILLHTSIS-PAKEK  355 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCc------eeeeccCCCccccccccccCCcccccCCC-ccccc
Confidence            36788899999999999999988  68887  67      8898  79999999999998988887755 55543

>smart00531 TFIIE Transcription initiation factor IIE

Probab=89.08  E-value=0.61  Score=26.21  Aligned_cols=13  Identities=23%  Similarity=0.920  Sum_probs=7.1

Q ss_pred             cccCccCcccCCc
Q psy12016         54 FSCDVCGKHYKYK   66 (111)
Q Consensus        54 ~~c~~c~~~~~~~   66 (111)
                      |.|+.|+..|...
T Consensus       100 Y~Cp~C~~~y~~~  112 (147)
T smart00531      100 YKCPNCQSKYTFL  112 (147)
T ss_pred             EECcCCCCEeeHH
Confidence            5566665555543

>KOG2482|consensus

Probab=89.05  E-value=0.63  Score=29.87  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             ceecCCCcccccchhHHHHHHhh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKN   41 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~   41 (111)
                      .+.|-.|.+.|..+..|..||+.
T Consensus       195 r~~CLyCekifrdkntLkeHMrk  217 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRK  217 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHh
Confidence            46899999999999999999975

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.97  E-value=0.4  Score=30.80  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=14.9

Q ss_pred             cccCccCcccCCchhhHhhhhhh
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYE   76 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~   76 (111)
                      -.|..|...|.....|..|.+..
T Consensus       221 P~C~FC~~~FYdDDEL~~HcR~~  243 (493)
T COG5236         221 PLCIFCKIYFYDDDELRRHCRLR  243 (493)
T ss_pred             chhhhccceecChHHHHHHHHhh
Confidence            35666777777666676666643

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=88.93  E-value=0.27  Score=27.17  Aligned_cols=24  Identities=33%  Similarity=0.686  Sum_probs=14.5

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      ...|-+||+.|..   |++|+..|||-
T Consensus        72 ~i~clecGk~~k~---LkrHL~~~~gl   95 (132)
T PF05443_consen   72 YIICLECGKKFKT---LKRHLRTHHGL   95 (132)
T ss_dssp             -EE-TBT--EESB---HHHHHHHTT-S
T ss_pred             eeEEccCCcccch---HHHHHHHccCC
Confidence            4578889888765   58888888763

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=88.74  E-value=0.22  Score=21.20  Aligned_cols=12  Identities=17%  Similarity=0.783  Sum_probs=6.5

Q ss_pred             eecCCCcccccc
Q psy12016         20 FTCDVCFKEYKY   31 (111)
Q Consensus        20 ~~C~~C~~~f~~   31 (111)
                      |.|..|+..|..
T Consensus         6 y~C~~Cg~~fe~   17 (41)
T smart00834        6 YRCEDCGHTFEV   17 (41)
T ss_pred             EEcCCCCCEEEE
Confidence            456666655543

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=88.36  E-value=0.12  Score=22.52  Aligned_cols=14  Identities=21%  Similarity=0.769  Sum_probs=10.0

Q ss_pred             eecCCCcccccchh
Q psy12016         20 FTCDVCFKEYKYKR   33 (111)
Q Consensus        20 ~~C~~C~~~f~~~~   33 (111)
                      |.|..||..|....
T Consensus         6 y~C~~Cg~~fe~~~   19 (42)
T PF09723_consen    6 YRCEECGHEFEVLQ   19 (42)
T ss_pred             EEeCCCCCEEEEEE
Confidence            67888887776543

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=88.13  E-value=0.65  Score=19.44  Aligned_cols=33  Identities=21%  Similarity=0.466  Sum_probs=15.1

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCccc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRT   92 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f   92 (111)
                      ..|+.|+..|.-.....     -..+. ..+|..|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~i-----p~~g~-~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEKI-----PPKGR-KVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHHC-----CCCCc-EEECCCCCCEe
Confidence            34555655555443321     11122 45566665544

>smart00614 ZnF_BED BED zinc finger

Probab=86.89  E-value=0.72  Score=20.73  Aligned_cols=23  Identities=22%  Similarity=0.599  Sum_probs=15.1

Q ss_pred             ccccCCCCcccccc-----hhHHHHHHH
Q psy12016         82 KYECDQCPHRTKHI-----SSLKKHMAL  104 (111)
Q Consensus        82 ~~~C~~C~~~f~~~-----~~l~~H~~~  104 (111)
                      ...|..|++.+...     +.|.+|++.
T Consensus        18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~~   45 (50)
T smart00614       18 RAKCKYCGKKLSRSSKGGTSNLRRHLRR   45 (50)
T ss_pred             EEEecCCCCEeeeCCCCCcHHHHHHHHh
Confidence            35677777766544     577888773

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=86.69  E-value=0.37  Score=24.48  Aligned_cols=31  Identities=23%  Similarity=0.576  Sum_probs=19.9

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHI   95 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~   95 (111)
                      +.|+.|++. .       ..+...  . .|.|..|+..|+-.
T Consensus        36 ~~Cp~C~~~-~-------VkR~a~--G-IW~C~kCg~~fAGg   66 (89)
T COG1997          36 HVCPFCGRT-T-------VKRIAT--G-IWKCRKCGAKFAGG   66 (89)
T ss_pred             CcCCCCCCc-c-------eeeecc--C-eEEcCCCCCeeccc
Confidence            788888865 1       122222  2 78888888887554

>TIGR00622 ssl1 transcription factor ssl1

Probab=86.68  E-value=2  Score=23.09  Aligned_cols=86  Identities=16%  Similarity=0.159  Sum_probs=48.8

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcCCCCC---CCC---CccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQ---NLD---GLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~---~~~---~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      +-|..|+.|+-.......|.+.....-...+.   .++   ..-.|--|...|........-.  ..... .|.|..|..
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~--~~~~~-~y~C~~C~~   89 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDE--LKDSH-RYVCAVCKN   89 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccccc--ccccc-ceeCCCCCC
Confidence            45778999998888888777653221111110   000   1124777887776543211000  11123 689999999


Q ss_pred             ccccchhHHHHHHHh
Q psy12016         91 RTKHISSLKKHMALK  105 (111)
Q Consensus        91 ~f~~~~~l~~H~~~~  105 (111)
                      .|-..-+.-.|...|
T Consensus        90 ~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        90 VFCVDCDVFVHESLH  104 (112)
T ss_pred             ccccccchhhhhhcc
Confidence            998777666665544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2186|consensus

Probab=86.18  E-value=0.59  Score=28.67  Aligned_cols=47  Identities=30%  Similarity=0.589  Sum_probs=31.9

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR   74 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~   74 (111)
                      .|.|..||..... ..+.+|+..-.+ ..      |.|..|+..|.. .....|..
T Consensus         3 ~FtCnvCgEsvKK-p~vekH~srCrn-~~------fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    3 FFTCNVCGESVKK-PQVEKHMSRCRN-AY------FSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EEehhhhhhhccc-cchHHHHHhccC-Ce------eEEeeccccccc-chhhhhhh
Confidence            4788899876544 456778655444 44      899999998887 44555644

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=85.39  E-value=0.37  Score=27.36  Aligned_cols=15  Identities=27%  Similarity=0.594  Sum_probs=10.5

Q ss_pred             cccCccCcccCCchh
Q psy12016         54 FSCDVCGKHYKYKKG   68 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~   68 (111)
                      +.|+.||..|.....
T Consensus        29 ~~c~~c~~~f~~~e~   43 (154)
T PRK00464         29 RECLACGKRFTTFER   43 (154)
T ss_pred             eeccccCCcceEeEe
Confidence            678888877766543

>KOG2186|consensus

Probab=85.18  E-value=0.47  Score=29.07  Aligned_cols=46  Identities=26%  Similarity=0.555  Sum_probs=35.0

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHH
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMA  103 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (111)
                      |.|..||....-+ .+..|+..-++ . .|.|..|+..|.. .++..|.+
T Consensus         4 FtCnvCgEsvKKp-~vekH~srCrn-~-~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVKKP-QVEKHMSRCRN-A-YFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehhhhhhhcccc-chHHHHHhccC-C-eeEEeeccccccc-chhhhhhh
Confidence            7899999887655 45558776655 5 7999999999977 56666754

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.92  E-value=1.2  Score=19.28  Aligned_cols=23  Identities=35%  Similarity=0.564  Sum_probs=13.2

Q ss_pred             ccccCCCCcccccc----hhHHHHHHH
Q psy12016         82 KYECDQCPHRTKHI----SSLKKHMAL  104 (111)
Q Consensus        82 ~~~C~~C~~~f~~~----~~l~~H~~~  104 (111)
                      ...|..|++.+...    +.|..|++.
T Consensus        16 ~a~C~~C~~~~~~~~~~ts~l~~HL~~   42 (45)
T PF02892_consen   16 KAKCKYCGKVIKYSSGGTSNLKRHLKK   42 (45)
T ss_dssp             -EEETTTTEE-----SSTHHHHHHHHH
T ss_pred             eEEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence            56788888777653    577777743

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG4167|consensus

Probab=83.76  E-value=0.31  Score=34.27  Aligned_cols=29  Identities=28%  Similarity=0.465  Sum_probs=24.9

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      ...|.|.+|++.|.....+..||++|...
T Consensus       790 ~giFpCreC~kvF~KiKSrNAHMK~Hr~q  818 (907)
T KOG4167|consen  790 TGIFPCRECGKVFFKIKSRNAHMKTHRQQ  818 (907)
T ss_pred             CceeehHHHHHHHHHHhhhhHHHHHHHHH
Confidence            45689999999999999999999988643

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=83.61  E-value=0.64  Score=29.58  Aligned_cols=25  Identities=32%  Similarity=0.588  Sum_probs=21.4

Q ss_pred             CccccCC--CCcccccchhHHHHHHHh
Q psy12016         81 PKYECDQ--CPHRTKHISSLKKHMALK  105 (111)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~  105 (111)
                      +||+|++  |++.+++...|+-|+.--
T Consensus       348 KpykCpV~gC~K~YknqnGLKYH~lhG  374 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQNGLKYHMLHG  374 (423)
T ss_pred             ceecCCCCCchhhhccccchhhhhhcc
Confidence            3999986  999999999999997533

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=83.29  E-value=0.53  Score=20.79  Aligned_cols=14  Identities=21%  Similarity=0.610  Sum_probs=9.5

Q ss_pred             ceecCCCcccccch
Q psy12016         19 MFTCDVCFKEYKYK   32 (111)
Q Consensus        19 ~~~C~~C~~~f~~~   32 (111)
                      .|.|+.|+..|...
T Consensus         3 ~y~C~~CG~~~~~~   16 (46)
T PRK00398          3 EYKCARCGREVELD   16 (46)
T ss_pred             EEECCCCCCEEEEC
Confidence            47788888766553

>KOG2482|consensus

Probab=83.09  E-value=2  Score=27.71  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             ccccCCCCcccccchhHHHHHH
Q psy12016         82 KYECDQCPHRTKHISSLKKHMA  103 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (111)
                      .+.|-.|.+.|..+..|+.||+
T Consensus       195 r~~CLyCekifrdkntLkeHMr  216 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMR  216 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHH
Confidence            4689999999999999999986

>KOG2231|consensus

Probab=83.04  E-value=2.1  Score=30.15  Aligned_cols=69  Identities=20%  Similarity=0.401  Sum_probs=43.4

Q ss_pred             eecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccC------cccCCchhhHhhhhhhcCCCCccccC--CCC-c
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCG------KHYKYKKGLGRHKRYECGQEPKYECD--QCP-H   90 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~------~~~~~~~~l~~h~~~~~~~~~~~~C~--~C~-~   90 (111)
                      ..|..|...|.....+.+|++.+.          +.|..|.      ..|.....|..|-+..     .|.|.  .|. +
T Consensus       183 p~C~~C~~~fld~~el~rH~~~~h----------~~chfC~~~~~~neyy~~~~dLe~HfR~~-----HflCE~~~C~~~  247 (669)
T KOG2231|consen  183 PLCKFCHERFLDDDELYRHLRFDH----------EFCHFCDYKTGQNEYYNDYDDLEEHFRKG-----HFLCEEEFCRTK  247 (669)
T ss_pred             ccchhhhhhhccHHHHHHhhccce----------eheeecCcccccchhcccchHHHHHhhhc-----Cccccccccccc
Confidence            468889999999999998887654          5566553      3444456677776643     77776  454 2


Q ss_pred             ccccchhHHHHHH
Q psy12016         91 RTKHISSLKKHMA  103 (111)
Q Consensus        91 ~f~~~~~l~~H~~  103 (111)
                      .|.....+..+++
T Consensus       248 ~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  248 KFYVAFELEIELK  260 (669)
T ss_pred             eeeehhHHHHHHH
Confidence            3333334444444

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=82.67  E-value=0.81  Score=21.52  Aligned_cols=30  Identities=23%  Similarity=0.555  Sum_probs=18.1

Q ss_pred             cccCccCcc-cCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         54 FSCDVCGKH-YKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        54 ~~c~~c~~~-~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      |.|+.||.. ..+-..      -..... +|.|+.||.
T Consensus        26 F~CPnCG~~~I~RC~~------CRk~~~-~Y~CP~CGF   56 (59)
T PRK14890         26 FLCPNCGEVIIYRCEK------CRKQSN-PYTCPKCGF   56 (59)
T ss_pred             eeCCCCCCeeEeechh------HHhcCC-ceECCCCCC
Confidence            889999876 222211      111224 899999974

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=81.01  E-value=1.6  Score=23.09  Aligned_cols=27  Identities=33%  Similarity=0.567  Sum_probs=22.8

Q ss_pred             Ccccc----CccCcccCCchhhHhhhhhhcC
Q psy12016         52 GLFSC----DVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus        52 ~~~~c----~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      .+|.|    ..|+....+...+..|.+.+++
T Consensus        79 ~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   79 DGYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            45899    8899999999999999887654

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []

Probab=80.63  E-value=0.71  Score=20.68  Aligned_cols=12  Identities=33%  Similarity=0.744  Sum_probs=6.2

Q ss_pred             eecCCCcccccc
Q psy12016         20 FTCDVCFKEYKY   31 (111)
Q Consensus        20 ~~C~~C~~~f~~   31 (111)
                      |.|..|+..+..
T Consensus         2 y~C~~CgyvYd~   13 (47)
T PF00301_consen    2 YQCPVCGYVYDP   13 (47)
T ss_dssp             EEETTTSBEEET
T ss_pred             cCCCCCCEEEcC
Confidence            455555555443

The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=80.03  E-value=1.7  Score=17.73  Aligned_cols=11  Identities=27%  Similarity=0.721  Sum_probs=6.0

Q ss_pred             eecCCCccccc
Q psy12016         20 FTCDVCFKEYK   30 (111)
Q Consensus        20 ~~C~~C~~~f~   30 (111)
                      |.|..|+..+.
T Consensus         1 Y~C~~Cg~~~~   11 (32)
T PF03604_consen    1 YICGECGAEVE   11 (32)
T ss_dssp             EBESSSSSSE-
T ss_pred             CCCCcCCCeeE
Confidence            45666666554

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		4e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 20  FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
           + C  C K +  K+ L RH++    +KP      + C  CGK +  +  L  H+R   G+
Sbjct: 50  YKCPECGKSFSDKKDLTRHQRTHTGEKP------YKCPECGKSFSQRANLRAHQRTHTGE 103
Query: 80  EPKYECDQCPHRTKHISSLKKHMALKHG 107
           +P Y C +C      ++ L+ H     G
Sbjct: 104 KP-YACPECGKSFSQLAHLRAHQRTHTG 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	6e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	6e-04

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 42.5 bits (101), Expect = 6e-07
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 54  FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
             C  C      K  L  H+R  C   P ++C+ C   TK  S+L KHM   HG
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFHG 62

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 42.0 bits (99), Expect = 1e-06
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 54  FSCDVCGKHYKYKKGLGRHKR---YECGQEPKYECDQCPHRTKHISSLKKHMALKHGVES 110
             C++CG   + K  L  H+R           + C+ C  R +   S+  H +  H    
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPALL 66

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 20 FTCDVCFKEYKYKRGLVRHKK---NSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYE 76
            C++C    + K  L  H++    +           F C+ CGK ++    +  H+  +
Sbjct: 8  LQCEICGFTCRQKASLNWHQRKHAETVAALR------FPCEFCGKRFEKPDSVAAHRS-K 60

Query: 77 CGQEPKYECDQCPHRT 92
                    +    +
Sbjct: 61 SHPALLLAPQESSGPS 76

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 20  FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
             C++C K ++    L RHK +   +KP      +SC VCG  +K K  +  H R   G 
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKP------YSCPVCGLRFKRKDRMSYHVRSHDGS 61

Query: 80  EPK-YECDQCPHRTKHISSLKKHM 102
             K Y C  C         L  H+
Sbjct: 62  VGKPYICQSCGKGFSRPDHLNGHI 85

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 54  FSCDVCGKHYKYKKGLGRHKRYECGQEPK-YECDQCPHRTKHISSLKKHMALKH 106
           + C +C   +     +  H   +  +    + C  C       S L  H+  +H
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 54  FSCDVCGKHYKYKKGLGRHKRYECGQEPK-YECDQCPHRTKHISSLKKHMALKHGV 108
           + C VC + Y +     RH      +  K Y C  C        ++  H+ + H +
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 38.2 bits (90), Expect = 5e-05
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 20  FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
             C+VC K +  K  L  H +     KP      + C  C         L +H R    +
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKP------YKCKTCDYAAADSSSLNKHLRIHSDE 62

Query: 80  EPKYECDQCPHRTKHISSLKKHM 102
            P ++C  CP+ +++ S L  H+
Sbjct: 63  RP-FKCQICPYASRNSSQLTVHL 84

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 38.3 bits (90), Expect = 7e-05
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 20  FTCDVCFKEYKYKRGLVRHKKNSCK---QKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYE 76
           F C  C K Y  K  L+ H+  +C    ++       F+C VC + ++ +  L  H    
Sbjct: 36  FECPKCGKCYFRKENLLEHEARNCMNRSEQV------FTCSVCQETFRRRMELRLHMVSH 89

Query: 77  CGQEPKYECDQCPHRTKHISSLKKHMALKH 106
            G+ P Y+C  C  +      L+ HM   H
Sbjct: 90  TGEMP-YKCSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 35.9 bits (84), Expect = 4e-04
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 20  FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYEC-- 77
             C  C K++  K  L  H +    +KP      F C  CGK Y  K+ L  H+   C  
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKP------FECPKCGKCYFRKENLLEHEARNCMN 61

Query: 78  -GQEPKYECDQCPHRTKHISSLKKHM 102
             ++  + C  C    +    L+ HM
Sbjct: 62  RSEQV-FTCSVCQETFRRRMELRLHM 86

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 35.1 bits (82), Expect = 5e-04
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 20  FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ 79
           F C +C K +K    L  H       +P      + C  CGK +  K  + +H     G+
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRP------YPCQYCGKRFHQKSDMKKHTFIHTGE 55

Query: 80  EPKYECDQCPHRTKHISSLKKHM 102
           +P ++C  C       S+L  H 
Sbjct: 56  KP-HKCQVCGKAFSQSSNLITHS 77

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 34.7 bits (79), Expect = 6e-04
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 56  CDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG 107
           C+ CG   K    L +H R      P Y C  C    K   +L KHM  K  
Sbjct: 4   CEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAH 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.95
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.92
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.92
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.92
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.91
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.91
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.9
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.9
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.89
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.89
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.89
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.88
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.87
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.87
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.86
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.85
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.84
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.83
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.83
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.81
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.8
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.8
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.78
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.78
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.77
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.77
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.77
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.73
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.72
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.72
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.72
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.71
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.71
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.7
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.7
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.69
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.69
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.68
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.68
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.68
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.68
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.67
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.67
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.67
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.67
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.66
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.65
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.65
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.65
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.64
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.62
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.61
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.6
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.6
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.6
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.59
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.59
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.59
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.59
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.58
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.58
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.58
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.57
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.57
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.57
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.55
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.53
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.52
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.51
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.5
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.48
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.48
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.47
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.45
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.45
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.43
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.43
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.42
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.42
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.41
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.41
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.41
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.41
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.4
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.4
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.4
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.4
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.4
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.4
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.39
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.39
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.39
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.39
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.39
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.39
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.39
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.39
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.39
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.39
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.39
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.38
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.38
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.38
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.38
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.38
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.37
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.36
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.36
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.36
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.36
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.35
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.35
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.35
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.34
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.34
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.34
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.33
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.32
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.32
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.32
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.32
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.31
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.3
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.29
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.29
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.29
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.28
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.27
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.27
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.26
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.26
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.25
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.25
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.25
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.25
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.24
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.24
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.23
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.23
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.23
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.23
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.23
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.22
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.22
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.22
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.22
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.21
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.2
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.19
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.19
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.18
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.18
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.17
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.15
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.14
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.14
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.14
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.13
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.13
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.12
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.12
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.11
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.05
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.02
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.02
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	99.02
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.01
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.99
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.99
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.98
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.97
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.97
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.97
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.96
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.96
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.95
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.95
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.92
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.92
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.91
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.91
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.9
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.86
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.85
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.84
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.83
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.81
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.3
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.79
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.76
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.76
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.75
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.73
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.72
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.19
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.71
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.66
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.65
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.64
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.64
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.63
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.62
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.62
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.6
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.59
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.59
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.58
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.57
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.56
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.56
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.95
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.52
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.5
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.5
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.5
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.48
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.47
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.46
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.44
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.75
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.75
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.36
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.68
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.28
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.67
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.67
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.38
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.25
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.88
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.78
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.76
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.63
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	94.45
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.14
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.99
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	93.63
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	92.35
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	91.79
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	90.98
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	90.72
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	90.45
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	90.33
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	89.74
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.15
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	88.97
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	88.92
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	88.58
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	88.1
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	86.34
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	85.64
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	84.05
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	83.6
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	83.14
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	82.3
2ct5_A	73	Zinc finger BED domain containing protein 1; DREF	81.99
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	81.21

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.95  E-value=4.7e-29  Score=135.81  Aligned_cols=98  Identities=18%  Similarity=0.377  Sum_probs=92.7

Q ss_pred             HHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccC
Q psy12016          7 LEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECD   86 (111)
Q Consensus         7 l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   86 (111)
                      +++|..++.++++|.|++|++.|.....|..|+++|+++++      |.|+.|++.|.....|..|+++|.+++ ||.|.
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~C~k~F~~~~~L~~H~~~H~~~k-~~~C~   82 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK------YPCRYCEKVFPLAEYRTKHEIHHTGER-RYQCL   82 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSC------EECSSSSCEESSHHHHHHHHHHHHTCC-CEEES
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCC------eeCCccCeecccccchhhhccccCCCc-cccCC
Confidence            45677788999999999999999999999999999999998      999999999999999999999999987 99999


Q ss_pred             CCCcccccchhHHHHHHHhhCCCCC
Q psy12016         87 QCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        87 ~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +|++.|...+.|..|++++++++|+
T Consensus        83 ~C~k~F~~~~~L~~H~~~hh~~~p~  107 (133)
T 2lt7_A           83 ACGKSFINYQFMSSHIKSVHSQDPS  107 (133)
T ss_dssp             SSCCEESSHHHHHHHHHHHTCCCTT
T ss_pred             CCCCCcCCHHHHHHHhHHhcCCCCC
Confidence            9999999999999999999998874

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=7.9e-27  Score=133.70  Aligned_cols=102  Identities=22%  Similarity=0.445  Sum_probs=80.4

Q ss_pred             HHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCc
Q psy12016          3 FLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPK   82 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   82 (111)
                      ....|..|.+.|.++++|.|+.|++.|.....|..|+..|.+..+      |.|+.|++.|.....|..|+++|.+++ +
T Consensus        89 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~L~~H~~~H~~~~-~  161 (190)
T 2i13_A           89 QRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP------YKCPECGKSFSREDNLHTHQRTHTGEK-P  161 (190)
T ss_dssp             CHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCC------EECTTTCCEESCHHHHHHHHHHHHCCC-C
T ss_pred             CHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCC------eECCCCCcccCCHHHHHHHHHhcCCCC-C
Confidence            345677777777777888888888888888888888888887777      888888888888888888888888877 8


Q ss_pred             cccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         83 YECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |.|..|++.|.....|..|+++|+|++||
T Consensus       162 ~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          162 YKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             EECTTTCCEESSHHHHHHHHTTC------
T ss_pred             eECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            88988998888888888898888888887

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.92  E-value=9.9e-25  Score=114.52  Aligned_cols=90  Identities=20%  Similarity=0.541  Sum_probs=85.9

Q ss_pred             CCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCccccc
Q psy12016         15 NDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKH   94 (111)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~   94 (111)
                      ..+++|.|..|++.|.....|..|+..|.+..+      |.|..|++.|.....|..|+++|.+++ +|.|..|++.|..
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~~   85 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERP------YTCDICHKAFRRQDHLRDHRYIHSKEK-PFKCQECGKGFCQ   85 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCC------CBCSSSCCBCSCHHHHHHHGGGSCCCC-TTSCSSSCCCCSS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCC------cCCCCccchhCCHHHHHHHHHHhCCCC-CeECCCcCCcccC
Confidence            457789999999999999999999999999888      999999999999999999999998887 9999999999999


Q ss_pred             chhHHHHHHHhhCCCCC
Q psy12016         95 ISSLKKHMALKHGVESQ  111 (111)
Q Consensus        95 ~~~l~~H~~~~~~ek~~  111 (111)
                      ...|..|+++|++++||
T Consensus        86 ~~~L~~H~~~H~~~~~~  102 (106)
T 2ee8_A           86 SRTLAVHKTLHMQTSSP  102 (106)
T ss_dssp             HHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHhCCCCCC
Confidence            99999999999999987

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.92  E-value=5.5e-25  Score=118.37  Aligned_cols=102  Identities=23%  Similarity=0.402  Sum_probs=90.2

Q ss_pred             hHHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc--cCcccCCchhhHhhhhhhcCC
Q psy12016          2 FFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV--CGKHYKYKKGLGRHKRYECGQ   79 (111)
Q Consensus         2 ~~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   79 (111)
                      .+...|..|.++| ++++|.|..|++.|.....|..|+..|.+..+      |.|..  |++.|.....|..|+++|.++
T Consensus        18 ~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~~~C~~~f~~~~~l~~H~~~h~~~   90 (124)
T 1ubd_C           18 RDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP------FQCTFEGCGKRFSLDFNLRTHVRIHTGD   90 (124)
T ss_dssp             SSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCC------EECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCC------eeCCCCCCcCccCCHHHHHHHHHHhCCC
Confidence            3456788999998 78899999999999999999999999999888      99986  999999999999999999998


Q ss_pred             CCccccC--CCCcccccchhHHHHHHHhhCCCCC
Q psy12016         80 EPKYECD--QCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        80 ~~~~~C~--~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      + +|.|.  .|++.|...+.|..|+++|++++++
T Consensus        91 ~-~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           91 R-PYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             C-CCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             C-ceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            7 99995  5999999999999999999999885

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.92  E-value=4.7e-25  Score=126.34  Aligned_cols=101  Identities=22%  Similarity=0.447  Sum_probs=70.5

Q ss_pred             HHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCcc
Q psy12016          4 LFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKY   83 (111)
Q Consensus         4 ~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   83 (111)
                      ...|..|.+.|.++++|.|+.|++.|.....|..|+..|.+..+      |.|..|++.|.....|..|+++|.+++ +|
T Consensus        62 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~  134 (190)
T 2i13_A           62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP------YACPECGKSFSQLAHLRAHQRTHTGEK-PY  134 (190)
T ss_dssp             HHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCC------EECTTTCCEESSHHHHHHHHHHHHCCC-CE
T ss_pred             HHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCC------CcCCCCCCccCCHHHHHHHHHHhCCCC-Ce
Confidence            34556666666666666666666666666666666666666665      777777777777777777777777766 77


Q ss_pred             ccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         84 ECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .|..|++.|.....|..|+++|++++||
T Consensus       135 ~C~~C~~~f~~~~~L~~H~~~H~~~~~~  162 (190)
T 2i13_A          135 KCPECGKSFSREDNLHTHQRTHTGEKPY  162 (190)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHCCCCE
T ss_pred             ECCCCCcccCCHHHHHHHHHhcCCCCCe
Confidence            7777777777777777777777777765

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=2.1e-24  Score=111.41  Aligned_cols=90  Identities=26%  Similarity=0.528  Sum_probs=85.3

Q ss_pred             cCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccc
Q psy12016         14 QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTK   93 (111)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~   93 (111)
                      +.++++|.|..|++.|.....|..|++.|.+..+      |.|..|++.|.....|..|+++|.+++ +|.|..|++.|.
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~   75 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP------YKCKTCDYAAADSSSLNKHLRIHSDER-PFKCQICPYASR   75 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCS------EECSSSCCEESSHHHHHHHHHHSCCCC-CEECSSSSCEES
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCC------EeCCCCCCccCCHHHHHHHHHHhCCCC-CccCCCCCCccC
Confidence            4678899999999999999999999999998888      999999999999999999999998877 999999999999


Q ss_pred             cchhHHHHHHHhhCCCC
Q psy12016         94 HISSLKKHMALKHGVES  110 (111)
Q Consensus        94 ~~~~l~~H~~~~~~ek~  110 (111)
                      ....|..|+++|+++++
T Consensus        76 ~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           76 NSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             SHHHHHHHHTTCCSCCC
T ss_pred             CHHHHHHHHHHhcCCCC
Confidence            99999999999999875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.91  E-value=1.4e-24  Score=120.75  Aligned_cols=103  Identities=28%  Similarity=0.414  Sum_probs=94.3

Q ss_pred             hHHHHHHhhhhh-cCCCCc--------eecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc--cCcccCCchhhH
Q psy12016          2 FFLFFLEYLSVW-QNDSGM--------FTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV--CGKHYKYKKGLG   70 (111)
Q Consensus         2 ~~~~~l~~~~~~-~~~~~~--------~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~   70 (111)
                      .+...|..|++. |..+.+        |.|..|++.|.....|..|+..|.+..+      |.|..  |++.|.....|.
T Consensus        36 ~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~~~C~~~f~~~~~L~  109 (155)
T 2rpc_A           36 STMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP------FPCPFPGCGKIFARSENLK  109 (155)
T ss_dssp             SSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCS------EECSCTTTCCEESCHHHHH
T ss_pred             CCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCc------ccCCcCCCCCccCCHHHHH
Confidence            345678889887 766654        7899999999999999999999999888      99998  999999999999


Q ss_pred             hhhhhhcCCCCccccCC--CCcccccchhHHHHHHHhhCCCCC
Q psy12016         71 RHKRYECGQEPKYECDQ--CPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        71 ~h~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .|+++|.+++ +|.|..  |++.|.....|..|+++|++|+||
T Consensus       110 ~H~~~h~~~~-~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~  151 (155)
T 2rpc_A          110 IHKRTHTGEK-PFKCEFEGCDRRFANSSDRKKHMHVHTSDKSG  151 (155)
T ss_dssp             HHHTTTCSSC-SBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCS
T ss_pred             HHHHhhCCCC-CccCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            9999999887 999997  999999999999999999999997

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.91  E-value=3.9e-24  Score=109.16  Aligned_cols=87  Identities=23%  Similarity=0.547  Sum_probs=80.1

Q ss_pred             CCceecC--CCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCccccc
Q psy12016         17 SGMFTCD--VCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKH   94 (111)
Q Consensus        17 ~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~   94 (111)
                      ++||.|+  .|++.|.....|..|++.|.+..+      |.|..|++.|.....|..|+++|.++. +|.|..|++.|..
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~~   74 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP------FQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFAR   74 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCC------EECTTTCCEESCHHHHHHHHHHHHCCC-CEECTTTCCEESS
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCC------ccCCCCCcccCCHHHHHHHHHHcCCCC-CccCCCCCchhCC
Confidence            5789998  599999999999999999999888      999999999999999999999999987 9999999999999


Q ss_pred             chhHHHHHHHhhCCCC
Q psy12016         95 ISSLKKHMALKHGVES  110 (111)
Q Consensus        95 ~~~l~~H~~~~~~ek~  110 (111)
                      ...|..|+++|+++++
T Consensus        75 ~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           75 SDERKRHTKIHLRQKD   90 (90)
T ss_dssp             HHHHHHHHGGGGC---
T ss_pred             HHHHHHHHHHhcccCC
Confidence            9999999999999874

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=9.9e-24  Score=113.31  Aligned_cols=100  Identities=23%  Similarity=0.484  Sum_probs=89.6

Q ss_pred             hHHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhh---hcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcC
Q psy12016          2 FFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKN---SCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus         2 ~~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~---~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      .....|..|++.|.++++|.|+.|++.|.....|..|+..   +.+..+      |.|..|++.|.....|..|+++|.+
T Consensus        18 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~   91 (124)
T 2dlq_A           18 LSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV------FTCSVCQETFRRRMELRLHMVSHTG   91 (124)
T ss_dssp             SSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCC------EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCC------eECCCCCCccCCHHHHHHHHHHcCC
Confidence            4567889999999999999999999999999999999885   455566      9999999999999999999999998


Q ss_pred             CCCccccCCCCcccccchhHHHHHHH-hhCC
Q psy12016         79 QEPKYECDQCPHRTKHISSLKKHMAL-KHGV  108 (111)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~~~-~~~e  108 (111)
                      ++ +|.|..|++.|.....|..|++. |.++
T Consensus        92 ~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           92 EM-PYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SC-SEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             CC-CccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            87 99999999999999999999985 4444

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.90  E-value=5.8e-24  Score=113.52  Aligned_cols=97  Identities=24%  Similarity=0.538  Sum_probs=82.5

Q ss_pred             hHHHHHHhhhhhcCCCCceecC--CCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCC
Q psy12016          2 FFLFFLEYLSVWQNDSGMFTCD--VCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ   79 (111)
Q Consensus         2 ~~~~~l~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   79 (111)
                      .....|..|++.|.++++|.|+  .|++.|.....|..|+..|.+..+      |.|..|++.|.....|..|+++|.++
T Consensus        19 ~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (119)
T 2jp9_A           19 FKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP------FQCKTCQRKFSRSDHLKTHTRTHTGE   92 (119)
T ss_dssp             SCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCC------EECTTTCCEESCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCC------ccCCccCchhCCHHHHHHHHHHhcCC
Confidence            3456788888888888888888  689999888889889888888887      88999999988888888898888887


Q ss_pred             CCcccc--CCCCcccccchhHHHHHHHh
Q psy12016         80 EPKYEC--DQCPHRTKHISSLKKHMALK  105 (111)
Q Consensus        80 ~~~~~C--~~C~~~f~~~~~l~~H~~~~  105 (111)
                      + +|.|  +.|++.|.....|..|+++|
T Consensus        93 ~-~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           93 K-PFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             C-CEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             C-CeeCCCCCCccccCCHHHHHHHHhcC
Confidence            7 8888  78999998888888888765

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=3.1e-24  Score=114.10  Aligned_cols=98  Identities=17%  Similarity=0.215  Sum_probs=87.1

Q ss_pred             HHHhhhhhcCCCCceecCCCcccccchhHHHHHHhh--hcCCCCCCCCCccccCccCccc--CCchhhHhhhhhhcCCCC
Q psy12016          6 FLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKN--SCKQKPQNLDGLFSCDVCGKHY--KYKKGLGRHKRYECGQEP   81 (111)
Q Consensus         6 ~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~--~~~~~~~~~~~~~~c~~c~~~~--~~~~~l~~h~~~~~~~~~   81 (111)
                      .|+.|.++|.+++||.|..|++.|.....|..|++.  +.+..+     .+.|..|++.|  .....|..|+++|.+++ 
T Consensus         6 ~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~-----~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~-   79 (115)
T 2dmi_A            6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDN-----HETDNNNPKRWSKPRKRSLLEMEGKEDAQK-   79 (115)
T ss_dssp             CCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSC-----CCCCCCCCSCCSSCCCCCCCCCCCSCCCCS-
T ss_pred             hhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCC-----CccCCCCCcccccccHHHHHHHhhccCCCc-
Confidence            467889999999999999999999999999999998  554444     14599999998  88899999999998887 


Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ||.|.+|++.|.....|..|+++++.++
T Consensus        80 ~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           80 VLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             ceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            9999999999999999999999988654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=7.4e-24  Score=111.41  Aligned_cols=93  Identities=14%  Similarity=0.246  Sum_probs=84.7

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      .+++.|.++++|.|..|++.|.....|..|++.|.  .+      |.|..|++.|.....|..|+. |.+++ +|.|..|
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~------~~C~~C~~~f~~~~~l~~H~~-H~~~~-~~~C~~C   75 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NA------AVCPYCSLRFFSPELKQEHES-KCEYK-KLTCLEC   75 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HS------BCCTTTCCCBSSHHHHHHHHH-HCSTG-GGEEGGG
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CC------ccCCCCCCccCCHHHHHHHHH-cCCCC-CccCccc
Confidence            34567889999999999999999999999999984  45      999999999999999999995 87776 9999999


Q ss_pred             CcccccchhHHHHHH-HhhCCCCC
Q psy12016         89 PHRTKHISSLKKHMA-LKHGVESQ  111 (111)
Q Consensus        89 ~~~f~~~~~l~~H~~-~~~~ek~~  111 (111)
                      ++.|.....|..|++ +|.+++||
T Consensus        76 ~~~f~~~~~L~~H~~~~H~~~~~~   99 (107)
T 1wjp_A           76 MRTFKSSFSIWRHQVEVHNQNNMA   99 (107)
T ss_dssp             TEECSSHHHHHHHHHHTSCCCCCC
T ss_pred             cchhCCHHHHHHHHHHHcCCCCCC
Confidence            999999999999997 88899887

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.89  E-value=3.4e-23  Score=103.94  Aligned_cols=82  Identities=26%  Similarity=0.572  Sum_probs=78.1

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhH
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSL   98 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l   98 (111)
                      ||.|..|++.|.....|..|++.|.+..+      |.|..|++.|.....|..|++.|.+++ +|.|..|++.|.....|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRP------YPCQYCGKRFHQKSDMKKHTFIHTGEK-PHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCC------EECSSSCCEESSHHHHHHHHHHHHTCC-CEECTTTSCEESSHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCC------eeCCcCChhhCCHHHHHHHHHHhcCCC-CCcCCCcchhhCChHHH
Confidence            68999999999999999999999999888      999999999999999999999999987 99999999999999999


Q ss_pred             HHHHHHhhC
Q psy12016         99 KKHMALKHG  107 (111)
Q Consensus        99 ~~H~~~~~~  107 (111)
                      ..|+++|+|
T Consensus        74 ~~H~~~H~g   82 (82)
T 2kmk_A           74 ITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHhhCC
Confidence            999999975

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=6.5e-23  Score=109.43  Aligned_cols=90  Identities=26%  Similarity=0.567  Sum_probs=85.2

Q ss_pred             CCCCceecCC--CcccccchhHHHHHHhhhcCCCCCCCCCccccC--ccCcccCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         15 NDSGMFTCDV--CFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD--VCGKHYKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        15 ~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      +++++|.|..  |++.|.....|..|+..|.+..+      |.|.  .|++.|.....|..|+++|.+++ +|.|..|++
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~   74 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKP------YQCDFKDCERRFSRSDQLKRHQRRHTGVK-PFQCKTCQR   74 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCC------EECCSTTCCCEESSHHHHHHHHHHHHCCC-CEECTTTCC
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCC------ccCCCCCCcCccCCHHHHHHHHHHcCCCC-CccCCccCc
Confidence            4678999997  99999999999999999999888      9999  79999999999999999999887 999999999


Q ss_pred             ccccchhHHHHHHHhhCCCCC
Q psy12016         91 RTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        91 ~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .|.....|..|+++|++++||
T Consensus        75 ~f~~~~~l~~H~~~h~~~~~~   95 (119)
T 2jp9_A           75 KFSRSDHLKTHTRTHTGEKPF   95 (119)
T ss_dssp             EESCHHHHHHHHHHHHTCCCE
T ss_pred             hhCCHHHHHHHHHHhcCCCCe
Confidence            999999999999999999986

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.89  E-value=6.5e-23  Score=108.21  Aligned_cols=88  Identities=27%  Similarity=0.546  Sum_probs=83.3

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcc
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHR   91 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~   91 (111)
                      ..|+++++|.| .|++.|.....|..|++.|.+..+      |.|..|++.|.....|..|+++|.+++ +|.|..|++.
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~   74 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP------YGCGVCGKKFKMKHHLVGHMKIHTGIK-PYECNICAKR   74 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCS------EECTTTSCEESSSHHHHHHHTTTCCCC-CEECSSSCCE
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcC------ccCCCCCcccCCHHHHHHHHHHcCCCC-CeeCCCCcch
Confidence            45788999999 999999999999999999999888      999999999999999999999998887 9999999999


Q ss_pred             cccchhHHHHHHHhhC
Q psy12016         92 TKHISSLKKHMALKHG  107 (111)
Q Consensus        92 f~~~~~l~~H~~~~~~  107 (111)
                      |.....|..|+++|+.
T Consensus        75 f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           75 FMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             ESCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHccc
Confidence            9999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=9.5e-23  Score=113.29  Aligned_cols=96  Identities=26%  Similarity=0.543  Sum_probs=50.2

Q ss_pred             HHHHhhhhhcCCCCceecCC--CcccccchhHHHHHHhhhcCCCCCCCCCccccCc--cCcccCCchhhHhhh-hhhcCC
Q psy12016          5 FFLEYLSVWQNDSGMFTCDV--CFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV--CGKHYKYKKGLGRHK-RYECGQ   79 (111)
Q Consensus         5 ~~l~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~-~~~~~~   79 (111)
                      ..|+.|.+.|.++++|.|+.  |++.|.....|..|++.|.+..+      |.|+.  |++.|.....|..|+ ++|.++
T Consensus        53 ~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  126 (155)
T 2gli_A           53 YMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP------YMCEHEGCSKAFSNASDRAKHQNRTHSNE  126 (155)
T ss_dssp             HHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCC------EECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCC------eeCCCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            34455555555555555543  55555555555555555555444      55554  555555555555554 444444


Q ss_pred             CCccccCC--CCcccccchhHHHHHHHhhC
Q psy12016         80 EPKYECDQ--CPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        80 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~  107 (111)
                      + +|.|..  |++.|.....|..|+++++|
T Consensus       127 ~-~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          127 K-PYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             C-CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             C-CeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            3 555554  55555555555555555543

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.88  E-value=9.5e-23  Score=116.72  Aligned_cols=103  Identities=22%  Similarity=0.345  Sum_probs=69.9

Q ss_pred             HHHHHHhhhhhcCCCCceec--CCCcccccchhHHHHHHhhhcCCCCCCCCCccccC--ccCcccCCchhhHhhh-hhhc
Q psy12016          3 FLFFLEYLSVWQNDSGMFTC--DVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD--VCGKHYKYKKGLGRHK-RYEC   77 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~-~~~~   77 (111)
                      ....|..|+++|.++++|.|  +.|++.|.....|..|+..|.+..+      |.|.  .|++.|.....|..|+ +.|.
T Consensus        26 ~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~~~C~~~f~~~~~l~~H~~~~h~   99 (190)
T 1tf6_A           26 KNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN------FTCDSDGCDLRFTTKANMKKHFNRFHN   99 (190)
T ss_dssp             SHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCC------EECCSSSCCCEESCHHHHHHHHHTTSS
T ss_pred             CHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCc------eeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            34566777777777777777  6677777777777777777776666      7777  6777777777777776 4442


Q ss_pred             CCCCcccc--CCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         78 GQEPKYEC--DQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        78 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .+.++|.|  ..|++.|.....|..|+++|++++||
T Consensus       100 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~  135 (190)
T 1tf6_A          100 IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPY  135 (190)
T ss_dssp             TTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSS
T ss_pred             CCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCc
Confidence            22236777  66777777777777777777776665

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=2.4e-22  Score=107.85  Aligned_cols=90  Identities=27%  Similarity=0.501  Sum_probs=83.5

Q ss_pred             CCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhh---hcCCCCccccCCCCcc
Q psy12016         15 NDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRY---ECGQEPKYECDQCPHR   91 (111)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~~~~~C~~C~~~   91 (111)
                      +++++|.|+.|++.|.....|..|+..|.+..+      |.|..|++.|.....|..|+..   +.++. +|.|..|++.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~-~~~C~~C~~~   75 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP------FECPKCGKCYFRKENLLEHEARNCMNRSEQ-VFTCSVCQET   75 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCS------CBCTTTCCBCSSHHHHHHHHHHCCCCSCCC-CEECSSSCCE
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCC------eECCCCCchhcCHHHHHHHHhhhhcCCCCC-CeECCCCCCc
Confidence            467899999999999999999999999999888      9999999999999999999986   34555 9999999999


Q ss_pred             cccchhHHHHHHHhhCCCCC
Q psy12016         92 TKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        92 f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |.....|..|+++|++++||
T Consensus        76 f~~~~~l~~H~~~h~~~~~~   95 (124)
T 2dlq_A           76 FRRRMELRLHMVSHTGEMPY   95 (124)
T ss_dssp             ESSHHHHHHHHHHHSSSCSE
T ss_pred             cCCHHHHHHHHHHcCCCCCc
Confidence            99999999999999999986

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=5e-22  Score=102.23  Aligned_cols=88  Identities=30%  Similarity=0.572  Sum_probs=80.5

Q ss_pred             CCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCC-CCccccCCCCcccc
Q psy12016         15 NDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ-EPKYECDQCPHRTK   93 (111)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~-~~~~~C~~C~~~f~   93 (111)
                      +++++|.|..|++.|.....|..|+..|.+..+      |.|..|++.|.....|..|++.|+++ .++|.|..|++.|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~   76 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP------YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS   76 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCS------EECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCC------CcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence            567899999999999999999999999998888      99999999999999999999999886 13999999999999


Q ss_pred             cchhHHHHHH-HhhCC
Q psy12016         94 HISSLKKHMA-LKHGV  108 (111)
Q Consensus        94 ~~~~l~~H~~-~~~~e  108 (111)
                      ....|..|++ .|.++
T Consensus        77 ~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           77 RPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SHHHHHHHHHHTSCCC
T ss_pred             CHHHHHHHHHHhcCCC
Confidence            9999999997 56554

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=5.9e-22  Score=110.08  Aligned_cols=103  Identities=22%  Similarity=0.350  Sum_probs=92.8

Q ss_pred             hHHHHHHhhhh---hcCCCCceecCCC-----cccccchhHHHHHHhhhcCCCCCCCCCccccCc--cCcccCCchhhHh
Q psy12016          2 FFLFFLEYLSV---WQNDSGMFTCDVC-----FKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV--CGKHYKYKKGLGR   71 (111)
Q Consensus         2 ~~~~~l~~~~~---~~~~~~~~~C~~C-----~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~   71 (111)
                      .+...|..|++   .|.++++|.|+.|     ++.|.....|..|+..|.+..+      |.|..  |++.|.....|..
T Consensus        14 ~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~------~~C~~~~C~~~f~~~~~l~~   87 (155)
T 2gli_A           14 DSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP------HKCTFEGCRKSYSRLENLKT   87 (155)
T ss_dssp             SCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCC------CCCCSTTCCCCCSSHHHHHH
T ss_pred             CCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCC------ccCCCCCCCCcccCHHHHHH
Confidence            45677888987   7888999988753     4899999999999999999888      99985  9999999999999


Q ss_pred             hhhhhcCCCCccccCC--CCcccccchhHHHHH-HHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQ--CPHRTKHISSLKKHM-ALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..  |++.|.....|..|+ ++|.+++||
T Consensus        88 H~~~h~~~~-~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~  129 (155)
T 2gli_A           88 HLRSHTGEK-PYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPY  129 (155)
T ss_dssp             HHHHTTTCC-CEECCSTTCCCEESSSSTTHHHHHHTTCSCCCE
T ss_pred             HHHHcCCCC-CeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCe
Confidence            999998887 999998  999999999999998 799999886

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.87  E-value=1e-22  Score=110.79  Aligned_cols=88  Identities=16%  Similarity=0.263  Sum_probs=79.8

Q ss_pred             hHHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCC-
Q psy12016          2 FFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQE-   80 (111)
Q Consensus         2 ~~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~-   80 (111)
                      .....|+.|+++|++++||.|+.|++.|.....|..|+++|+++.+      |.|++|++.|.....|..|++++++++ 
T Consensus        33 ~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~C~k~F~~~~~L~~H~~~hh~~~p  106 (133)
T 2lt7_A           33 VCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR------YQCLACGKSFINYQFMSSHIKSVHSQDP  106 (133)
T ss_dssp             SCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCC------EEESSSCCEESSHHHHHHHHHHHTCCCT
T ss_pred             CCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCcc------ccCCCCCCCcCCHHHHHHHhHHhcCCCC
Confidence            3567899999999999999999999999999999999999999999      999999999999999999999998754 


Q ss_pred             ----CccccCCCCcccccc
Q psy12016         81 ----PKYECDQCPHRTKHI   95 (111)
Q Consensus        81 ----~~~~C~~C~~~f~~~   95 (111)
                          ++|.|..|++.|...
T Consensus       107 ~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A          107 SGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             TSSSCCEEECCCCSSCCCC
T ss_pred             CCCCCCeecCCCCchhhhc
Confidence                258899999888643

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.86  E-value=1.5e-21  Score=104.90  Aligned_cols=88  Identities=20%  Similarity=0.475  Sum_probs=80.4

Q ss_pred             CCCceecC--CCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCC--CCcc
Q psy12016         16 DSGMFTCD--VCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQ--CPHR   91 (111)
Q Consensus        16 ~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--C~~~   91 (111)
                      .+++|.|+  .|++.|.....|..|+..| +..+      |.|..|++.|.....|..|+++|.+++ +|.|..  |++.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~~~C~~~   73 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRV------HVCAECGKAFVESSKLKRHQLVHTGEK-PFQCTFEGCGKR   73 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCC------EECTTTCCEESSHHHHHHHGGGTSCCC-CEECCSTTCCCE
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCC------eECCCCCchhCCHHHHHHHHHHcCCCC-CeeCCCCCCcCc
Confidence            45789999  8999999999999999998 6667      999999999999999999999999887 999986  9999


Q ss_pred             cccchhHHHHHHHhhCCCCC
Q psy12016         92 TKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        92 f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |.....|..|+++|++++||
T Consensus        74 f~~~~~l~~H~~~h~~~~~~   93 (124)
T 1ubd_C           74 FSLDFNLRTHVRIHTGDRPY   93 (124)
T ss_dssp             ESCHHHHHHHHHHHHCCCCC
T ss_pred             cCCHHHHHHHHHHhCCCCce
Confidence            99999999999999999987

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.85  E-value=2.6e-21  Score=110.77  Aligned_cols=99  Identities=29%  Similarity=0.456  Sum_probs=87.8

Q ss_pred             hHHHHHHhhhhhcCCCCceecC--CCcccccchhHHHHHH-hhh-cCCCCCCCCCcccc--CccCcccCCchhhHhhhhh
Q psy12016          2 FFLFFLEYLSVWQNDSGMFTCD--VCFKEYKYKRGLVRHK-KNS-CKQKPQNLDGLFSC--DVCGKHYKYKKGLGRHKRY   75 (111)
Q Consensus         2 ~~~~~l~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~h~-~~~-~~~~~~~~~~~~~c--~~c~~~~~~~~~l~~h~~~   75 (111)
                      .....|..|.++|.++++|.|.  .|++.|.....|..|+ ..| .+..+      |.|  ..|++.|.....|..|+++
T Consensus        55 ~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~------~~C~~~~C~k~f~~~~~L~~H~~~  128 (190)
T 1tf6_A           55 TSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV------YVCHFENCGKAFKKHNQLKVHQFS  128 (190)
T ss_dssp             SSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSC------CEECSSSSCEECSSHHHHHHHHGG
T ss_pred             CCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcce------eeCCCCCCccccCCHHHHHHHHHH
Confidence            4567889999999999999999  8999999999999998 556 34556      999  8899999999999999999


Q ss_pred             hcCCCCccccCC--CCcccccchhHHHHHHHhhC
Q psy12016         76 ECGQEPKYECDQ--CPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        76 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~  107 (111)
                      |.+++ ||.|..  |++.|...+.|..|+++|++
T Consensus       129 H~~~~-~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          129 HTQQL-PYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             GSSSC-SSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             hCCCC-CccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            98877 999987  99999999999999998886

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.84  E-value=1.6e-20  Score=97.34  Aligned_cols=85  Identities=25%  Similarity=0.516  Sum_probs=79.4

Q ss_pred             CCCceecCC--CcccccchhHHHHHHhhhcCCCCCCCCCccccC--ccCcccCCchhhHhhhhhhcCCCCccccCCCCcc
Q psy12016         16 DSGMFTCDV--CFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD--VCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHR   91 (111)
Q Consensus        16 ~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~   91 (111)
                      .+++|.|..  |++.|.....|..|++.|.+..+      |.|.  .|++.|.....|..|+++|.+++ +|.|..|++.
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~   84 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP------YKCTWEGCDWRFARSDELTRHYRKHTGAK-PFQCGVCNRS   84 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCC------EECCSSSCCCEESSHHHHHHHHHHHTSCC-SCBCSSSCCB
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCC------eeCCCCCCCCccCCHHHHHHHHHHhCCCC-CeECCCCcCc
Confidence            457899996  99999999999999999999888      9996  69999999999999999999887 9999999999


Q ss_pred             cccchhHHHHHHHhhC
Q psy12016         92 TKHISSLKKHMALKHG  107 (111)
Q Consensus        92 f~~~~~l~~H~~~~~~  107 (111)
                      |.....|..|+++|++
T Consensus        85 f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           85 FSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CSSHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHhCC
Confidence            9999999999999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.83  E-value=1.4e-20  Score=95.67  Aligned_cols=83  Identities=29%  Similarity=0.593  Sum_probs=77.8

Q ss_pred             CCceecCC--CcccccchhHHHHHHhhhcCCCCCCCCCccccC--ccCcccCCchhhHhhhhhhcCCCCccccCCCCccc
Q psy12016         17 SGMFTCDV--CFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD--VCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRT   92 (111)
Q Consensus        17 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f   92 (111)
                      ..+|.|..  |++.|.....|..|+..|.+..+      |.|+  .|++.|.....|..|+++|.++. +|.|..|++.|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f   75 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP------YHCDWDGCGWKFARSDELTRHYRKHTGHR-PFQCQKCDRAF   75 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCC------EECCSTTTCCEESSHHHHHHHHHHHHCCC-CEECSSSSCEE
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCC------cCCCCCCCCCccCCHHHHHHHHHHcCCCC-CccCCCCCccc
Confidence            46799999  99999999999999999998888      9997  69999999999999999999987 99999999999


Q ss_pred             ccchhHHHHHHHhh
Q psy12016         93 KHISSLKKHMALKH  106 (111)
Q Consensus        93 ~~~~~l~~H~~~~~  106 (111)
                      ...+.|..|+++|.
T Consensus        76 ~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           76 SRSDHLALHMKRHF   89 (89)
T ss_dssp             SSHHHHHHHGGGGC
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999998873

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.83  E-value=4.6e-21  Score=90.64  Aligned_cols=55  Identities=29%  Similarity=0.685  Sum_probs=35.3

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      |.|.+|++.|.....|..|+++|.+++ ||.|.+|++.|...++|..|+++|+||+
T Consensus         5 y~C~~C~k~F~~~~~L~~H~~~Ht~ek-p~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            5 FFCNFCGKTYRDASGLSRHRRAHLGYR-PRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHTCC-CEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             ccCCCCCCEeCCHHHHHHHHHHhCCCc-CeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            666666666666666666666666655 6666666666666666666666666654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.81  E-value=2.9e-21  Score=98.22  Aligned_cols=83  Identities=20%  Similarity=0.431  Sum_probs=78.0

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccch
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHIS   96 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~   96 (111)
                      ++||.|..|++.|.....|..|+++|.++.+      |.|..|++.|.....|..|++.+++ . ++.|..|++.|....
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C~k~f~~~~~L~~H~~~h~~-~-~~~c~~C~~~f~~~~   72 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKP------FACDICGRKFARSDERKRHRDIQHI-L-PILEDKVEELLSKNY   72 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCC------EECTTTCCEESSHHHHHHHHHHHTH-H-HHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCC------ccCCCCCCccCCHHHHHHHHHHhCC-C-cchHHHHHHHHHHHh
Confidence            4789999999999999999999999999988      9999999999999999999999875 5 899999999999999


Q ss_pred             hHHHHHHHhhC
Q psy12016         97 SLKKHMALKHG  107 (111)
Q Consensus        97 ~l~~H~~~~~~  107 (111)
                      .|..|++..++
T Consensus        73 ~L~~H~~~~h~   83 (88)
T 1llm_C           73 HLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhHHHHHHHHH
Confidence            99999987774

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.80  E-value=7.8e-20  Score=86.40  Aligned_cols=57  Identities=30%  Similarity=0.638  Sum_probs=55.0

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCC
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ   79 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   79 (111)
                      |+||.|.+|++.|.....|..|+++|+++++      |.|.+|++.|.....|..|+++|.++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp------~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRP------RSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCC------EECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcC------eECCCCCCCcCCHHHHHHHhCccCCC
Confidence            7899999999999999999999999999999      99999999999999999999999774

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=100.82  Aligned_cols=97  Identities=22%  Similarity=0.250  Sum_probs=83.4

Q ss_pred             cCCCCceecCCCcccccchhHHHHHHhh-hcCCCCCC--CCCccccCccCcccCCchhhHhhhhhhcCCCCccccCC--C
Q psy12016         14 QNDSGMFTCDVCFKEYKYKRGLVRHKKN-SCKQKPQN--LDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQ--C   88 (111)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~-~~~~~~~~--~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--C   88 (111)
                      ...+.+|.|..|++.|.....|..|+.. |.+..+..  ....+.|..|++.|.....|..|+++|.+++ +|.|..  |
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~~~C   98 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK-PFPCPFPGC   98 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCC-SEECSCTTT
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCC-cccCCcCCC
Confidence            4456789999999999999999999987 66543211  1122689999999999999999999999987 999998  9


Q ss_pred             CcccccchhHHHHHHHhhCCCCC
Q psy12016         89 PHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        89 ~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      ++.|.....|..|+++|++++||
T Consensus        99 ~~~f~~~~~L~~H~~~h~~~~~~  121 (155)
T 2rpc_A           99 GKIFARSENLKIHKRTHTGEKPF  121 (155)
T ss_dssp             CCEESCHHHHHHHHTTTCSSCSB
T ss_pred             CCccCCHHHHHHHHHhhCCCCCc
Confidence            99999999999999999999986

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.78  E-value=4.6e-19  Score=89.20  Aligned_cols=78  Identities=31%  Similarity=0.641  Sum_probs=73.7

Q ss_pred             ceec--CCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc--cCcccCCchhhHhhhhhhcCCCCccccCC---CCcc
Q psy12016         19 MFTC--DVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV--CGKHYKYKKGLGRHKRYECGQEPKYECDQ---CPHR   91 (111)
Q Consensus        19 ~~~C--~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~~---C~~~   91 (111)
                      ||.|  +.|++.|.....|..|++.|.++.+      |.|+.  |++.|.....|..|+++|.+    |.|..   |++.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~~~C~~~f~~~~~l~~H~~~h~~----~~C~~~~~C~~~   70 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP------YECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFV   70 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCC------EECCSTTCCCEESSHHHHHHHHHHHHS----EECCSCSSCCCE
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCC------eeCCCCCCcCccCCHHHHHHHHHHhCC----CCCCCCCCCCCc
Confidence            6899  9999999999999999999999988      99988  99999999999999999976    89999   9999


Q ss_pred             cccchhHHHHHHHhh
Q psy12016         92 TKHISSLKKHMALKH  106 (111)
Q Consensus        92 f~~~~~l~~H~~~~~  106 (111)
                      |.....|..|+++||
T Consensus        71 f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           71 GKTWTLYLKHVAECH   85 (85)
T ss_dssp             ESSHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHhcC
Confidence            999999999999875

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.78  E-value=5.1e-19  Score=89.31  Aligned_cols=79  Identities=20%  Similarity=0.357  Sum_probs=71.2

Q ss_pred             HHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCC----CCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCc
Q psy12016          7 LEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ----KPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPK   82 (111)
Q Consensus         7 l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~----~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   82 (111)
                      ++.|+++|.+++||.|..|++.|.....|..|+..+...    .+      |.|..|++.|.....|..|+++|+++. +
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~------~~C~~C~~~f~~~~~L~~H~~~h~~~~-~   75 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA------FVCSKCGKTFTRRNTMARHADNCAGPD-G   75 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCC------EECSSSCCEESCHHHHHHHHHHCCCCC-S
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcc------eECCCCCChhCCHHHHHHHHHHccCCC-C
Confidence            567899999999999999999999999999999876654    45      999999999999999999999999987 9


Q ss_pred             cccCCCCccc
Q psy12016         83 YECDQCPHRT   92 (111)
Q Consensus        83 ~~C~~C~~~f   92 (111)
                      +.|..|+..+
T Consensus        76 ~~~~~~~~~~   85 (86)
T 1x6h_A           76 VEGENSGPSS   85 (86)
T ss_dssp             CCCCCCCCCC
T ss_pred             cccCCCCCCC
Confidence            9999998764

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=9.6e-20  Score=94.30  Aligned_cols=74  Identities=16%  Similarity=0.271  Sum_probs=53.0

Q ss_pred             chhHHHHHHhhhcCCCCCCCCCccccCccCcccC-CchhhHhhhhhhcC-CCCccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         31 YKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYK-YKKGLGRHKRYECG-QEPKYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        31 ~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~-~~~~l~~h~~~~~~-~~~~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      ....+..|++.|.+..+      |.|..|++.|. ....|..|+++|++ ++ +|.|.+|++.|.....|..|+++|+++
T Consensus         8 ~~~~~~~h~~~h~~~~~------~~C~~C~k~f~~~~~~L~~H~~~h~~~~~-~~~C~~C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A            8 PGGPEEQWQRAIHERGE------AVCPTCNVVTRKTLVGLKKHMEVCQKLQD-ALKCQHCRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             CCCSCSHHHHTTTTTSC------CCCTTTCCCCSSCSHHHHHHHHHHHHHHH-HHSCSSSCCCCSCHHHHHHHHHHHSCS
T ss_pred             CCCcHHHHHHHhccCCC------cCCCCCCCChhhhHHHHHHHHHHHcCCCC-CEECCCCCCccCCHHHHHHHHHHHcCC
Confidence            33445566777777666      77777777777 77777777777766 55 777777777777777777777777777


Q ss_pred             CCC
Q psy12016        109 ESQ  111 (111)
Q Consensus       109 k~~  111 (111)
                      +|+
T Consensus        81 kp~   83 (98)
T 2gqj_A           81 KPS   83 (98)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            763

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.77  E-value=8.8e-19  Score=86.24  Aligned_cols=58  Identities=28%  Similarity=0.662  Sum_probs=53.7

Q ss_pred             ccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         53 LFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        53 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .|.|..|++.|.....|..|+++|.+++ +|.|..|++.|.....|..|+++|++|+||
T Consensus        17 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~-~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           17 PYKCDRCQASFRYKGNLASHKTVHTGEK-PYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             SBCCTTSSCCBSCHHHHHHHHHHHCCCC-SEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CeECCCCCceeCCHHHHHHHHHHcCCCC-CEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            3999999999999999999999998877 999999999999999999999999999997

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=1.8e-18  Score=85.99  Aligned_cols=72  Identities=31%  Similarity=0.607  Sum_probs=66.8

Q ss_pred             CCCCceecCC--CcccccchhHHHHHHh-hhcCCCCCCCCCccccCc--cCcccCCchhhHhhhhhhcCCCCccccCCCC
Q psy12016         15 NDSGMFTCDV--CFKEYKYKRGLVRHKK-NSCKQKPQNLDGLFSCDV--CGKHYKYKKGLGRHKRYECGQEPKYECDQCP   89 (111)
Q Consensus        15 ~~~~~~~C~~--C~~~f~~~~~l~~h~~-~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~   89 (111)
                      +++++|.|..  |++.|.....|..|++ .|.+..+      |.|..  |++.|.....|..|+++|++++ +|.|..|+
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~------~~C~~~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~C~   75 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS------FSCPEPACGKSFNFKKHLKEHMKLHSDTR-DYICEFSG   75 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCC------EECSCTTTCCEESSHHHHHHHHHHHHTSC-CCSCCSSS
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCC------eECCCCCCcCccCCHHHHHHHHHHhCCCC-CeeCCCCC
Confidence            5678899987  9999999999999998 7999888      99999  9999999999999999999987 99999999


Q ss_pred             cccc
Q psy12016         90 HRTK   93 (111)
Q Consensus        90 ~~f~   93 (111)
                      +.|.
T Consensus        76 k~F~   79 (79)
T 2dlk_A           76 PSSG   79 (79)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9883

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=5.7e-18  Score=82.45  Aligned_cols=57  Identities=33%  Similarity=0.574  Sum_probs=42.7

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |.|..|++.|.....|..|+++|.+++ +|.|.+|++.|.....|..|+++|++++|.
T Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A           10 EKCSECSYSCSSKAALRIHERIHCTDR-PFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGCCSC-SEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCC-CEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            777777777777777777777776665 777777777777777777777777777763

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=5.3e-18  Score=84.01  Aligned_cols=57  Identities=30%  Similarity=0.684  Sum_probs=37.5

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |.|..|++.|.....|..|+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus        19 ~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~   75 (77)
T 2cot_A           19 YKCDECGKSFSHSSDLSKHRRTHTGEK-PYKCDECGKAFIQRSHLIGHHRVHTGSGPS   75 (77)
T ss_dssp             SBCSSSCCBCSCHHHHHHHHTTTCCSC-SEECSSSCCEESSHHHHHHHGGGSCCCCCC
T ss_pred             EECCCCCcccCCHHHHHHHHHHcCCCc-CeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            666666666666666666666666555 666666666666666666666666666665

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.72  E-value=2.4e-17  Score=86.19  Aligned_cols=77  Identities=26%  Similarity=0.463  Sum_probs=70.8

Q ss_pred             hHHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCC
Q psy12016          2 FFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEP   81 (111)
Q Consensus         2 ~~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   81 (111)
                      .....|..|.+.|..+++|.|..|++.|.....|..|+..|.+..+      |.|..|++.|.....|..|+++|.+++ 
T Consensus        28 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~L~~H~~~H~~~~-  100 (106)
T 2ee8_A           28 TKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP------FKCQECGKGFCQSRTLAVHKTLHMQTS-  100 (106)
T ss_dssp             SSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCT------TSCSSSCCCCSSHHHHHHHHHHTTSCC-
T ss_pred             CCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCC------eECCCcCCcccCHHHHHHHHHHhCCCC-
Confidence            3466789999999999999999999999999999999999999888      999999999999999999999998877 


Q ss_pred             cccc
Q psy12016         82 KYEC   85 (111)
Q Consensus        82 ~~~C   85 (111)
                      +|.+
T Consensus       101 ~~~~  104 (106)
T 2ee8_A          101 SPTA  104 (106)
T ss_dssp             CCCC
T ss_pred             CCcC
Confidence            7653

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.4e-17  Score=82.44  Aligned_cols=67  Identities=27%  Similarity=0.553  Sum_probs=62.2

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCcccc
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC   85 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   85 (111)
                      ..+.++++|.|..|++.|.....|..|++.|.+..+      |.|..|++.|.....|..|+++|++++ ||.|
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~L~~H~~~H~~~~-p~~C   77 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP------YKCDECGKAFIQRSHLIGHHRVHTGSG-PSSG   77 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCS------EECSSSCCEESSHHHHHHHGGGSCCCC-CCCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcC------eeCCCCCCccCCHHHHHHHHHHhCCCC-CCCC
Confidence            445678999999999999999999999999999888      999999999999999999999999887 8887

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.8e-17  Score=85.37  Aligned_cols=76  Identities=21%  Similarity=0.320  Sum_probs=64.6

Q ss_pred             ccccchhHHHHHHhhhcCCCCCCCCCccccCccCccc-CCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHH-HHH
Q psy12016         27 KEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHY-KYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKH-MAL  104 (111)
Q Consensus        27 ~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~-~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~  104 (111)
                      ..|.....+..|+..+.+..+      |.|+.|++.| .....|..|+++| +++ +|.|.+|++.|.....|..| +++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~------~~C~~C~k~F~~~~~~L~~H~~~h-~~k-~~~C~~Cgk~F~~~~~L~~H~~~~   85 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGS------VSCPTCQAVGRKTIEGLKKHMENC-KQE-MFTCHHCGKQLRSLAGMKYHVMAN   85 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSC------EECTTTCSCEESSHHHHHHHHHHH-CCC-CCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHhcCCCC------cCCCCCCCCcccCHHHHHHHHHHH-CCC-CeECCCCCCeeCCHHHHHHHhHHh
Confidence            355667778888888888888      9999999999 8999999999999 766 99999999999999999999 777


Q ss_pred             hhCCCCC
Q psy12016        105 KHGVESQ  111 (111)
Q Consensus       105 ~~~ek~~  111 (111)
                      |++ +||
T Consensus        86 H~~-~p~   91 (96)
T 2ctd_A           86 HNS-LPS   91 (96)
T ss_dssp             TCC-CSS
T ss_pred             cCC-CCC
Confidence            764 554

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=5.9e-18  Score=85.33  Aligned_cols=71  Identities=17%  Similarity=0.387  Sum_probs=64.2

Q ss_pred             HHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCC---CccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         35 LVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQE---PKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        35 l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~---~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +.+|+++|.++++      |.|..|++.|.....|..|++.++.+.   ++|.|..|++.|.....|..|+++|++++++
T Consensus         3 ~~~H~~~H~~~k~------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~   76 (86)
T 1x6h_A            3 SGSSGRTHTGEKP------YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGV   76 (86)
T ss_dssp             TTCCSTTCCCCCC------EECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSC
T ss_pred             cccccceecCCCC------CcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCc
Confidence            4568888988888      999999999999999999998877752   4899999999999999999999999999875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=6.6e-17  Score=83.03  Aligned_cols=73  Identities=18%  Similarity=0.273  Sum_probs=68.5

Q ss_pred             hHHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCC
Q psy12016          2 FFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQE   80 (111)
Q Consensus         2 ~~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   80 (111)
                      .....|..|++.|..+++|.|..|++.|.....|..|+..|.+..+      |.|..|++.|.....|..|+++|+++.
T Consensus        19 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           19 SRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP------FKCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             CCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCC------EECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             CCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCC------ccCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3567899999999999999999999999999999999999999888      999999999999999999999998876

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.9e-17  Score=81.00  Aligned_cols=55  Identities=25%  Similarity=0.532  Sum_probs=35.6

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      |.|..|++.|.....|..|+++|.+++ +|.|..|++.|.....|..|+++|+++.
T Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~h~~~~-~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           15 YGCVECGKAFSRSSILVQHQRVHTGEK-PYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             EECSSSCCEESSHHHHHHHHHGGGCSC-CEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             ccCCCCCCccCCHHHHHHHHHhcCCCC-CeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            666666666666666666666665555 6666666666666666666666666654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.69  E-value=4.4e-17  Score=82.76  Aligned_cols=72  Identities=22%  Similarity=0.485  Sum_probs=66.2

Q ss_pred             HHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCC
Q psy12016          3 FLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQE   80 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   80 (111)
                      ....|..|++.|.++++|.|..|++.|.....|..|+..|.+..+      |.|..|++.|.....|..|+++|++++
T Consensus        18 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           18 QSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP------FACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             SHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC------EECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCC------ccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            456788999999999999999999999999999999999999988      999999999999999999999998754

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=3.8e-17  Score=84.86  Aligned_cols=69  Identities=17%  Similarity=0.327  Sum_probs=60.2

Q ss_pred             cCCCCceecCCCcccccchhHHHHHHh-hh---cCCCCCCCCCccccCccCcccCCchhhHhh-hhhhcCCCCccccCCC
Q psy12016         14 QNDSGMFTCDVCFKEYKYKRGLVRHKK-NS---CKQKPQNLDGLFSCDVCGKHYKYKKGLGRH-KRYECGQEPKYECDQC   88 (111)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~-~~---~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~~~~~~C~~C   88 (111)
                      -.+++||.|..|++.|..+..|..|++ .|   .++.+      |.|.+|++.|.....|..| +++|.+++ ||.|.++
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekp------f~C~~Cgk~F~~~~~L~~H~~r~Htgek-py~C~~~   85 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS------YVCVECNFLTKRYDALSEHNLKYHPGEE-NFKLTMV   85 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCC------EEETTTTEEESSTHHHHTHHHHTSTTCC-CEEEEEC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCC------cCCCCCCcccCCHHHHHHHHHHhcCCCC-CeeCCcc
Confidence            367899999999999999999999997 48   45667      9999999999999999999 78898877 9999875


Q ss_pred             C
Q psy12016         89 P   89 (111)
Q Consensus        89 ~   89 (111)
                      .
T Consensus        86 ~   86 (102)
T 2ghf_A           86 K   86 (102)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.68  E-value=1.1e-16  Score=78.70  Aligned_cols=65  Identities=28%  Similarity=0.707  Sum_probs=59.6

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCcc
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKY   83 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   83 (111)
                      ..+.++++|.|..|++.|.....|..|++.|.+.++      |.|..|++.|.....|..|+++|.+++ ||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~------~~C~~C~k~f~~~~~L~~H~~~H~~~k-p~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP------YRCNICGAQFNRPANLKTHTRIHSGEK-PY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS------EECTTTCCEESCHHHHHHHHHHHCCSC-CC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCC------EECCCCCchhCCHHHHHHHHHhcCCCC-CC
Confidence            345678999999999999999999999999999988      999999999999999999999998876 64

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.68  E-value=6.3e-17  Score=80.81  Aligned_cols=70  Identities=26%  Similarity=0.457  Sum_probs=65.0

Q ss_pred             HHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcC
Q psy12016          3 FLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      ....|..|.+.|.++++|.|..|++.|.....|..|+..|.++.+      |.|..|++.|.....|..|+++|+|
T Consensus        13 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           13 RSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP------HKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             SHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCC------EECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             CchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCC------CcCCCcchhhCChHHHHHHHHhhCC
Confidence            456789999999999999999999999999999999999999988      9999999999999999999998864

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.68  E-value=3.4e-18  Score=92.37  Aligned_cols=82  Identities=20%  Similarity=0.278  Sum_probs=69.8

Q ss_pred             CCceecCCCccccc------chhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         17 SGMFTCDVCFKEYK------YKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        17 ~~~~~C~~C~~~f~------~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      .+.+.|+.|.+.|.      ....|..|+ .|.++++      |.|..|++.|.....|..|+++|  +. ||.|..|++
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~------~~C~~C~k~f~~~~~l~~H~~~H--~~-~~~C~~C~k  108 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQ------FVCPLCLMPFSSSVSLKQHIRYT--EH-TKVCPVCKK  108 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCS------EECTTTCCEESSHHHHHHHHHHT--CC-CCBCTTTCC
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCC------eECCCCCcccCCHhHHHHHHHHC--CC-CCCCCCCCc
Confidence            34567888776665      456666665 6777888      99999999999999999999998  55 999999999


Q ss_pred             ccccchhHHHHHHHhhCC
Q psy12016         91 RTKHISSLKKHMALKHGV  108 (111)
Q Consensus        91 ~f~~~~~l~~H~~~~~~e  108 (111)
                      .|...+.|..|+++|+++
T Consensus       109 ~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          109 EFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             BCSSHHHHHHHHHHTTCC
T ss_pred             ccCCHHHHHHHHHHHCCc
Confidence            999999999999999986

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=4.6e-17  Score=84.53  Aligned_cols=61  Identities=21%  Similarity=0.380  Sum_probs=54.5

Q ss_pred             CCCccccCccCcccCCchhhHhhhhh-h---cCCCCccccCCCCcccccchhHHHH-HHHhhCCCCC
Q psy12016         50 LDGLFSCDVCGKHYKYKKGLGRHKRY-E---CGQEPKYECDQCPHRTKHISSLKKH-MALKHGVESQ  111 (111)
Q Consensus        50 ~~~~~~c~~c~~~~~~~~~l~~h~~~-~---~~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~ek~~  111 (111)
                      .++.|.|..|++.|.....|..|++. |   .+++ ||.|..|++.|...+.|..| +++|++|+||
T Consensus        15 gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ek-pf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy   80 (102)
T 2ghf_A           15 VEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS-SYVCVECNFLTKRYDALSEHNLKYHPGEENF   80 (102)
T ss_dssp             CCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSC-CEEETTTTEEESSTHHHHTHHHHTSTTCCCE
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCC-CcCCCCCCcccCCHHHHHHHHHHhcCCCCCe
Confidence            34459999999999999999999974 7   3455 99999999999999999999 8999999997

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=2.6e-17  Score=85.06  Aligned_cols=72  Identities=25%  Similarity=0.369  Sum_probs=65.9

Q ss_pred             HHhhhhhcCCCCceecCCCccccc-chhHHHHHHhhhcC-CCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccc
Q psy12016          7 LEYLSVWQNDSGMFTCDVCFKEYK-YKRGLVRHKKNSCK-QKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYE   84 (111)
Q Consensus         7 l~~~~~~~~~~~~~~C~~C~~~f~-~~~~l~~h~~~~~~-~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~   84 (111)
                      +..|+++|..+++|.|..|++.|. ....|..|++.|.+ +.+      |.|.+|++.|.....|..|++.|++++ |..
T Consensus        12 ~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~------~~C~~C~k~F~~~~~L~~H~~~h~~~k-p~~   84 (98)
T 2gqj_A           12 EEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA------LKCQHCRKQFKSKAGLNYHTMAEHSAK-PSD   84 (98)
T ss_dssp             CSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHH------HSCSSSCCCCSCHHHHHHHHHHHSCSC-SSC
T ss_pred             HHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCC------EECCCCCCccCCHHHHHHHHHHHcCCC-CCC
Confidence            567889999999999999999999 99999999999988 777      999999999999999999999999877 654


Q ss_pred             c
Q psy12016         85 C   85 (111)
Q Consensus        85 C   85 (111)
                      .
T Consensus        85 ~   85 (98)
T 2gqj_A           85 A   85 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=2.2e-17  Score=81.79  Aligned_cols=66  Identities=17%  Similarity=0.309  Sum_probs=38.5

Q ss_pred             HhhhhhcCCCCceecCCCcccccchhHHHHHHh-hhcCC-CCCCCCCccccCccCcccCCchhhHhhhhhhcCC
Q psy12016          8 EYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKK-NSCKQ-KPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ   79 (111)
Q Consensus         8 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~-~~~~~-~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   79 (111)
                      ..|+++|.+++||.|..|++.|.....|..|+. .|.+. .+      |.|..|++.|.....|..|++.+++.
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~------~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK------FHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSS------EECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCc------cCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            445666666666666666666666666666664 34432 34      55555555555555555555554443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=7.6e-17  Score=79.80  Aligned_cols=68  Identities=18%  Similarity=0.382  Sum_probs=59.3

Q ss_pred             HHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhh-hhcCCCCccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         35 LVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR-YECGQEPKYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        35 l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      +.+|+++|.++++      |.|..|++.|.....|..|++ .|.++.++|.|..|++.|.....|..|++++++.
T Consensus         3 ~~~H~~~H~~~k~------~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            3 SGSSGRTHSGEKP------YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCSCCCS------EECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CCccccccCCCCC------eECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            3467888888888      999999999999999999997 5655434999999999999999999999987754

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1.3e-16  Score=77.96  Aligned_cols=65  Identities=26%  Similarity=0.477  Sum_probs=60.5

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQE   80 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   80 (111)
                      +.++|.++++|.|..|++.|.....|..|++.|.+..+      |.|..|++.|.....|..|+++|+++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~------~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP------YKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCC------EECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCC------eECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            45678899999999999999999999999999999988      999999999999999999999998753

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=2.4e-16  Score=81.18  Aligned_cols=67  Identities=28%  Similarity=0.434  Sum_probs=61.1

Q ss_pred             HHHHhhhhhcCCCCceecCCCcccc-cchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhh-hhhhcC
Q psy12016          5 FFLEYLSVWQNDSGMFTCDVCFKEY-KYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRH-KRYECG   78 (111)
Q Consensus         5 ~~l~~~~~~~~~~~~~~C~~C~~~f-~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~   78 (111)
                      ..|..|.+.+..+++|.|+.|++.| .....|..|++.| ++++      |.|.+|++.|.....|..| +++|.+
T Consensus        20 ~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~------~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           20 SLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEM------FTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             CHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCC------CCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCC------eECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            3567788888889999999999999 9999999999999 8888      9999999999999999999 888865

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=2.9e-16  Score=76.33  Aligned_cols=62  Identities=23%  Similarity=0.419  Sum_probs=58.5

Q ss_pred             hcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCC
Q psy12016         13 WQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQE   80 (111)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   80 (111)
                      .+.++++|.|..|++.|.....|..|++.|.+..+      |.|..|++.|.....|..|++.|++++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C~~~f~~~~~L~~H~~~h~~~~   64 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP------FKCNYCSFDTKQPSNLSKHMKKFHGDM   64 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCS------EECSSSSCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC------EeCCCCCCccCCHHHHHHHHHHHhCCC
Confidence            46788999999999999999999999999999988      999999999999999999999999876

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.65  E-value=1.6e-16  Score=74.27  Aligned_cols=55  Identities=29%  Similarity=0.513  Sum_probs=46.7

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      |.|..|++.|.....|..|+++|.+++ +|.|..|++.|.....|..|+++|+++|
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDVR-PYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC-CEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCCC-CccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            778888888888888888888887766 8888888888888888888888888876

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-16  Score=80.46  Aligned_cols=57  Identities=23%  Similarity=0.476  Sum_probs=48.8

Q ss_pred             CccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHH-HhhCCC
Q psy12016         52 GLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMA-LKHGVE  109 (111)
Q Consensus        52 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~ek  109 (111)
                      +.+.|++|++.|.....|..|+++|++++ ||.|.+|++.|.....|..|++ +|.+|+
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRLLHAAQ-VFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHTTSCSS-SEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhhccCCC-ccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            34899999999999999999999998877 9999999999999999999974 566665

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.64  E-value=3e-16  Score=73.29  Aligned_cols=53  Identities=28%  Similarity=0.602  Sum_probs=42.1

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      |.|..|++.|.....|..|+++|.+++ ||.|..|++.|.....|..|+++|++
T Consensus         5 ~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            5 RECSYCGKFFRSNYYLNIHLRTHTGEK-PYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             CBCTTTCCBCSCHHHHHHHHHHHHCCC-CEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             ccCCCCcchhCChHHHHHHHHHcCCCC-CcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            778888888888888888888877766 78888888888888888888887764

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.62  E-value=8.5e-16  Score=77.27  Aligned_cols=63  Identities=21%  Similarity=0.364  Sum_probs=55.8

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhh-hhcCCC
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR-YECGQE   80 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~   80 (111)
                      ..+...++|.|++|++.|..+..|..|+++|+++++      |.|..|++.|.....|..|++ .|.++.
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~------~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQV------FPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSS------EECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCc------cCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            445667889999999999999999999999999999      999999999999999999974 565543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=3e-16  Score=75.39  Aligned_cols=53  Identities=21%  Similarity=0.476  Sum_probs=32.1

Q ss_pred             cccCccCcccCCchhhHhhhhh-h-cCCCCccccCCCCcccccchhHHHHHHHhhC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRY-E-CGQEPKYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~-~-~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      |.|..|++.|.....|..|++. | .+++ +|.|+.|++.|...+.|..|++++|+
T Consensus        11 ~~C~~C~k~f~~~~~l~~H~~~~H~~~~~-~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           11 YRCKVCSRVYTHISNFCRHYVTSHKRNVK-VYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHSSSSCC-CEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             eECCCCcchhCCHHHHHHHHHHHcCCCCc-CeECCCCCCccCCHHHHHHHHHHHcC
Confidence            5566666666655556666555 3 2333 66666666666666666666666654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=71.30  Aligned_cols=57  Identities=23%  Similarity=0.358  Sum_probs=50.2

Q ss_pred             CCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcC
Q psy12016         16 DSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      +++||.|..|++.|.....|..|+.+|.++.+      |.|+.|++.|.....|..|++++++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKP------YKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCC------EECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCC------cCCCCCcchhCCHHHHHHHHHHhcC
Confidence            35789999999999999999999999999998      9999999999999999999998753

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.7e-17  Score=81.17  Aligned_cols=69  Identities=16%  Similarity=0.176  Sum_probs=61.6

Q ss_pred             HHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCcccc
Q psy12016          6 FLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYEC   85 (111)
Q Consensus         6 ~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   85 (111)
                      .|..|+++|.+++||.|..|++.|.....|..       ..+      |.|..|++.|.....|..|+++|.+++ +|.|
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~------~~C~~C~~~f~~~~~l~~H~~~H~~~~-~~~C   70 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKT------PMCEKCRKDSCQEAALNKDEGNESGKK-TSGP   70 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSS------CCCHHHHHTCSCCCSSCCCSSCCCCCC-CSSC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCC------CCCCCCChhhcCHHHHHHHHHhhcCCC-CCCC
Confidence            46788899999999999999999999887775       445      999999999999999999999998877 9999


Q ss_pred             CCC
Q psy12016         86 DQC   88 (111)
Q Consensus        86 ~~C   88 (111)
                      .+|
T Consensus        71 ~~C   73 (73)
T 2ctu_A           71 SSG   73 (73)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=9e-16  Score=73.69  Aligned_cols=61  Identities=20%  Similarity=0.409  Sum_probs=55.8

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhh-h-cCCCCCCCCCccccCccCcccCCchhhHhhhhhhcC
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKN-S-CKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~-~-~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      ++|.+++||.|+.|++.|.....|..|+.. | .+..+      |.|+.|++.|.....|..|++.+++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~------~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV------YPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCC------EECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcC------eECCCCCCccCCHHHHHHHHHHHcC
Confidence            567889999999999999999999999988 6 57777      9999999999999999999998865

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.59  E-value=3e-15  Score=76.62  Aligned_cols=70  Identities=23%  Similarity=0.485  Sum_probs=63.1

Q ss_pred             HHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCC--CCCCCCCccccCccCcccCCchhhHhhhh-hhcC
Q psy12016          3 FLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ--KPQNLDGLFSCDVCGKHYKYKKGLGRHKR-YECG   78 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~--~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~   78 (111)
                      ....|..|+++|..+++|.|..|++.|.....|..|+..|.+.  .+      |.|..|++.|.....|..|++ .|.+
T Consensus        19 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------~~C~~C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           19 DVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP------YICQSCGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             SSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSS------BCCSSSCCCBSSHHHHHHHHHHTSCC
T ss_pred             ChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCc------eECCCccchhCCHHHHHHHHHHhcCC
Confidence            3457889999999999999999999999999999999999886  66      999999999999999999986 5544

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.59  E-value=3.6e-15  Score=76.99  Aligned_cols=70  Identities=20%  Similarity=0.350  Sum_probs=64.7

Q ss_pred             HHHHHHhhhhhcCCCCceecC--CCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcC
Q psy12016          3 FLFFLEYLSVWQNDSGMFTCD--VCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      ....|..|++.|..+++|.|.  .|++.|.....|..|+..|.++.+      |.|..|++.|.....|..|+++|.+
T Consensus        29 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           29 KSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP------FQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCS------CBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCC------eECCCCcCccCCHHHHHHHHHHhCC
Confidence            456789999999999999996  699999999999999999999988      9999999999999999999998853

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=8.5e-16  Score=76.12  Aligned_cols=61  Identities=20%  Similarity=0.471  Sum_probs=44.0

Q ss_pred             cCCCCceecCCCcccccchhHHHHHHhhhcC---CCCCCCCCccccCccCcccCCchhhHhhhhhhcCCC
Q psy12016         14 QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCK---QKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQE   80 (111)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~---~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   80 (111)
                      |++++||.|..|++.|.....|..|++.|.+   +.+      |.|..|++.|.....|..|++.++.+.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~------~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR------FPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCC------EECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcc------cCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            5677788888888888888888888777764   555      777777777777777777774444433

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=2.2e-15  Score=79.18  Aligned_cols=70  Identities=24%  Similarity=0.427  Sum_probs=65.5

Q ss_pred             HHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcC
Q psy12016          3 FLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      ....|..|.+.|..+++|.|..|++.|.....|..|+..|.+..+      |.|..|++.|.....|..|++.++.
T Consensus        21 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           21 HKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP------YECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             SHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCC------EECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCC------eeCCCCcchhcCHHHHHHHHHHccc
Confidence            456789999999999999999999999999999999999999888      9999999999999999999998864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.58  E-value=4.2e-15  Score=75.19  Aligned_cols=68  Identities=19%  Similarity=0.370  Sum_probs=63.6

Q ss_pred             HHHHHHhhhhhcCCCCceecC--CCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhh
Q psy12016          3 FLFFLEYLSVWQNDSGMFTCD--VCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYE   76 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~   76 (111)
                      ....|..|++.|.++++|.|+  .|++.|.....|..|+..|.++.+      |.|..|++.|.....|..|+++|
T Consensus        19 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           19 KSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP------FQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             SHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCC------EECSSSSCEESSHHHHHHHGGGG
T ss_pred             CHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCC------ccCCCCCcccCCHHHHHHHHHhh
Confidence            456789999999999999997  699999999999999999999988      99999999999999999999887

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=3.6e-15  Score=73.92  Aligned_cols=58  Identities=26%  Similarity=0.575  Sum_probs=54.1

Q ss_pred             ccccCc--cCcccCCchhhHhhhh-hhcCCCCccccCC--CCcccccchhHHHHHHHhhCCCCC
Q psy12016         53 LFSCDV--CGKHYKYKKGLGRHKR-YECGQEPKYECDQ--CPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        53 ~~~c~~--c~~~~~~~~~l~~h~~-~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .|.|..  |++.|.....|..|++ .|.+++ +|.|..  |++.|.....|..|+++|++++||
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~-~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~   69 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK-SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY   69 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGSCC-CEECSCTTTCCEESSHHHHHHHHHHHHTSCCC
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCCCC-CeECCCCCCcCccCCHHHHHHHHHHhCCCCCe
Confidence            388887  9999999999999999 687877 999999  999999999999999999999987

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.58  E-value=3.2e-15  Score=69.70  Aligned_cols=56  Identities=21%  Similarity=0.494  Sum_probs=53.0

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCC
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQE   80 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   80 (111)
                      ||.|..|++.|.....|..|+..|.+..+      |.|..|++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRP------YHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCC------EECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCC------ccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            68999999999999999999999999888      999999999999999999999998765

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.7e-15  Score=79.23  Aligned_cols=75  Identities=15%  Similarity=0.173  Sum_probs=65.4

Q ss_pred             hHHHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhh-hhcCCC
Q psy12016          2 FFLFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR-YECGQE   80 (111)
Q Consensus         2 ~~~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~   80 (111)
                      .....|..|++.|  .++|.|..|++.|.....|..|+. |.++.+      |.|..|++.|.....|..|++ .|.++.
T Consensus        27 ~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~------~~C~~C~~~f~~~~~L~~H~~~~H~~~~   97 (107)
T 1wjp_A           27 SSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKK------LTCLECMRTFKSSFSIWRHQVEVHNQNN   97 (107)
T ss_dssp             SSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGG------GEEGGGTEECSSHHHHHHHHHHTSCCCC
T ss_pred             CCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCC------ccCccccchhCCHHHHHHHHHHHcCCCC
Confidence            3456788888887  478999999999999999999996 998888      999999999999999999997 776665


Q ss_pred             CccccC
Q psy12016         81 PKYECD   86 (111)
Q Consensus        81 ~~~~C~   86 (111)
                       +|.+.
T Consensus        98 -~~~~~  102 (107)
T 1wjp_A           98 -MAPTS  102 (107)
T ss_dssp             -CCCCC
T ss_pred             -CCCCC
Confidence             88765

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=3.9e-15  Score=76.24  Aligned_cols=57  Identities=19%  Similarity=0.272  Sum_probs=45.8

Q ss_pred             cccCccCcccCCchhhHhhhhh-hcCCCCc--------cccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRY-ECGQEPK--------YECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~-~~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +.|..|++.|.....|..|++. |.++. +        |.|..|++.|.....|..|+++|++++||
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~-~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   91 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGP-EQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSG   91 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCT-TCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCC-CCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            5677788888777778778776 55544 5        88899999999889999999999988887

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=6.1e-15  Score=72.98  Aligned_cols=62  Identities=21%  Similarity=0.445  Sum_probs=53.9

Q ss_pred             hcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcC---CCCccccCCCCcccccchhHHHHHH-HhhCCCC
Q psy12016         42 SCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG---QEPKYECDQCPHRTKHISSLKKHMA-LKHGVES  110 (111)
Q Consensus        42 ~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~---~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~ek~  110 (111)
                      |+++++      |.|..|++.|.....|..|+++|.+   ++ +|.|..|++.|.....|..|++ .|.+++|
T Consensus         2 h~~~k~------~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~-~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            2 SSGSSG------LQCEICGFTCRQKASLNWHQRKHAETVAAL-RFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCSCCC------EECSSSCCEESSHHHHHHHHHHHHHHTTTC-CEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCcC------eECCCCCCeeCCHHHHHHHHHHhhccCCCc-ccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            456666      9999999999999999999999986   55 9999999999999999999995 5555554

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=5e-15  Score=69.76  Aligned_cols=53  Identities=26%  Similarity=0.621  Sum_probs=33.6

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHH-HHhhC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHM-ALKHG  107 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~~~~  107 (111)
                      |.|..|++.|.....|..|+++|.+++ +|.|..|++.|.....|..|+ ++|.+
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRSHTNEK-PYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTTSSC-SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCCCCccccCCHHHHHHHHHHhCCCC-CccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            566666666666666666666665555 666666666666666666665 34443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=1.3e-14  Score=70.86  Aligned_cols=51  Identities=24%  Similarity=0.614  Sum_probs=24.7

Q ss_pred             cccC--ccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHh
Q psy12016         54 FSCD--VCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALK  105 (111)
Q Consensus        54 ~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (111)
                      |.|+  .|++.|.....|..|+++|.+++ +|.|..|++.|.....|..|+++|
T Consensus        20 ~~C~~~~C~k~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           20 YACPVESCDRRFSRSDELTRHIRIHTGQK-PFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             EECSSTTBCCEESSHHHHHHHHHHHHCCC-CEECTTTCCEESCHHHHHHHHTTC
T ss_pred             cCCcCCCCCCccCCHHHHHHHHHhhCCCC-CeECCCCCchhCCHHHHHHHHHhc
Confidence            4443  24444444444444444444444 455555555555555555554443

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.52  E-value=6.7e-15  Score=68.00  Aligned_cols=51  Identities=18%  Similarity=0.331  Sum_probs=46.2

Q ss_pred             CcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         60 GKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        60 ~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      ++.|.....|..|+++|.+++ +|.|..|++.|...+.|..|+++|++|+||
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQ-PATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSC-CEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccccCCCcchhhHHHhcCCCC-CccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            356777788889999998887 999999999999999999999999999997

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.51  E-value=2.1e-14  Score=77.40  Aligned_cols=67  Identities=18%  Similarity=0.314  Sum_probs=59.8

Q ss_pred             HHHHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCC
Q psy12016          4 LFFLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQ   79 (111)
Q Consensus         4 ~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   79 (111)
                      ...|..|. .|.+++||.|..|++.|.....|..|+++|  ..+      |.|..|++.|.....|..|++.|++.
T Consensus        60 ~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~------~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           60 SSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHT------KVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCC------CBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCC------CCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            34567776 577889999999999999999999999998  667      99999999999999999999999774

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=2.8e-14  Score=67.12  Aligned_cols=56  Identities=27%  Similarity=0.710  Sum_probs=51.1

Q ss_pred             CceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhh-hhhcCC
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHK-RYECGQ   79 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~-~~~~~~   79 (111)
                      +||.|..|++.|.....|..|++.|.+..+      |.|..|++.|.....|..|+ +.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP------YPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCS------EECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCC------ccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            479999999999999999999999999888      99999999999999999996 566553

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.48  E-value=3e-14  Score=72.00  Aligned_cols=54  Identities=24%  Similarity=0.586  Sum_probs=51.3

Q ss_pred             ccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhC
Q psy12016         53 LFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        53 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      .|.|..|++.|.....|..|+++|.+++ +|.|..|++.|.....|..|++++++
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHCCC-CEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHcCCCC-CccCCCCCCccCCHHHHHHHHHHhCC
Confidence            3999999999999999999999999987 99999999999999999999999885

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.4e-14  Score=68.75  Aligned_cols=54  Identities=20%  Similarity=0.351  Sum_probs=35.9

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccC-CCCcccccchhHHHHHHHhhCCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECD-QCPHRTKHISSLKKHMALKHGVES  110 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~~~~ek~  110 (111)
                      |.|..|++.|. ...|..|+++ .+++ ||.|. .|++.|...+.|..|+++|....|
T Consensus        11 ~~C~~C~k~f~-~~~L~~H~~~-~~~~-p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           11 QPCTYCTKEFV-FDTIQSHQYQ-CPRL-PVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             EECSSSCCEEE-HHHHHHHHHH-CSSS-EEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             eeccccCCccC-HHHHHHHHHH-cCCc-CccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            66666666666 6666666666 5544 67777 677777777777777776666554

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=2.5e-14  Score=69.86  Aligned_cols=63  Identities=24%  Similarity=0.495  Sum_probs=57.1

Q ss_pred             HhhhhhcCCCCceecC--CCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhh
Q psy12016          8 EYLSVWQNDSGMFTCD--VCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYE   76 (111)
Q Consensus         8 ~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~   76 (111)
                      .....++.++++|.|+  .|++.|.....|..|+..|.+..+      |.|..|++.|.....|..|+++|
T Consensus         8 ~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~------~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP------FQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC------EECTTTCCEESCHHHHHHHHTTC
T ss_pred             chhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC------eECCCCCchhCCHHHHHHHHHhc
Confidence            3445667889999997  599999999999999999999988      99999999999999999999876

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.2e-14  Score=75.82  Aligned_cols=72  Identities=18%  Similarity=0.141  Sum_probs=63.1

Q ss_pred             HHHHHHhhhhh--cCCCCcee-cCCCcccc--cchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhc
Q psy12016          3 FLFFLEYLSVW--QNDSGMFT-CDVCFKEY--KYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYEC   77 (111)
Q Consensus         3 ~~~~l~~~~~~--~~~~~~~~-C~~C~~~f--~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   77 (111)
                      ....|+.|++.  +..++++. |..|++.|  .....|..|++.|.++.+      |.|.+|++.|.....|..|++.++
T Consensus        31 ~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~------~~C~~C~k~f~~~~~L~~H~~~hh  104 (115)
T 2dmi_A           31 TLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV------LKCMYCGHSFESLQDLSVHMIKTK  104 (115)
T ss_dssp             SHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSS------CBCSSSCCBCSSHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcc------eECCCCCCccCCHHHHHHHHHHhC
Confidence            45678889888  76666655 99999999  889999999999999888      999999999999999999999987


Q ss_pred             CCC
Q psy12016         78 GQE   80 (111)
Q Consensus        78 ~~~   80 (111)
                      ...
T Consensus       105 ~~~  107 (115)
T 2dmi_A          105 HYQ  107 (115)
T ss_dssp             TTT
T ss_pred             Ccc
Confidence            655

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=4e-17  Score=79.82  Aligned_cols=65  Identities=17%  Similarity=0.362  Sum_probs=58.0

Q ss_pred             hHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         33 RGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        33 ~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      ..|..|++.|.++.+      |.|..|++.|.....|..       ++ +|.|..|++.|.....|..|+++|++++||
T Consensus         4 ~~l~~H~~~h~~~~~------~~C~~C~k~f~~~~~l~~-------~~-~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~   68 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRS------QKCSKCGIIFIRRSTLSR-------RK-TPMCEKCRKDSCQEAALNKDEGNESGKKTS   68 (73)
T ss_dssp             CSCCCCCCCCCCCSE------EECSSSCCEEECCCCCCC-------SS-SCCCHHHHHTCSCCCSSCCCSSCCCCCCCS
T ss_pred             hhHHHHHHHhCCCCC------eeCCcccchhCCHHHhCc-------CC-CCCCCCCChhhcCHHHHHHHHHhhcCCCCC
Confidence            456778888888888      999999999999888765       45 999999999999999999999999999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.2e-13  Score=66.18  Aligned_cols=59  Identities=22%  Similarity=0.501  Sum_probs=53.3

Q ss_pred             cCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC-ccCcccCCchhhHhhhhhhcCCC
Q psy12016         14 QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD-VCGKHYKYKKGLGRHKRYECGQE   80 (111)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~-~c~~~~~~~~~l~~h~~~~~~~~   80 (111)
                      .-+++||.|..|++.|. ...|..|+++ +++++      |.|. .|++.|.....|..|+++|....
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p------~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLP------VACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSE------EECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcC------ccCCcccCcccccHHHHHHHHHhhcccC
Confidence            34678999999999999 9999999998 88888      9999 99999999999999999986654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.43  E-value=1.6e-13  Score=68.61  Aligned_cols=66  Identities=18%  Similarity=0.171  Sum_probs=60.5

Q ss_pred             HHHHHHhhhhhcCCCCceecCC--CcccccchhHHHHHHhhhcCCCCCCCCCccccCc---cCcccCCchhhHhhhhhhc
Q psy12016          3 FLFFLEYLSVWQNDSGMFTCDV--CFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV---CGKHYKYKKGLGRHKRYEC   77 (111)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~---c~~~~~~~~~l~~h~~~~~   77 (111)
                      ....|+.|.++|.++++|.|+.  |++.|.....|..|++.|.+         |.|..   |++.|.....|..|+++++
T Consensus        15 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---------~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           15 KHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---------YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             SHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---------EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---------CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            4567899999999999999998  99999999999999999987         78999   9999999999999998763

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=1.3e-13  Score=61.44  Aligned_cols=45  Identities=16%  Similarity=0.225  Sum_probs=37.0

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|+.|++.|.....|..|+.+|.++.+      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS------SGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTS------SCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCC------CCCCCC
Confidence            467778888888888888888888888888888888777      888766

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=1.9e-13  Score=60.92  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=36.9

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|..|++.|.....|..|+.+|.++++      |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP------SGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCC------SSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            467778888888888888888888888888888888777      888765

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=2e-13  Score=60.78  Aligned_cols=45  Identities=22%  Similarity=0.323  Sum_probs=35.6

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|+.|++.|.....|..|++.|.++.+      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSC------CSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCC------CCCCCC
Confidence            466777788888888888888888888888888877777      777766

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=2.6e-13  Score=60.44  Aligned_cols=45  Identities=16%  Similarity=0.210  Sum_probs=37.2

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|..|++.|.....|..|+++|.++++      |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCT------TSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            467778888888888888888888888888888888877      888776

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=2.7e-13  Score=59.84  Aligned_cols=44  Identities=23%  Similarity=0.312  Sum_probs=35.8

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      |+++|++++||.|..|++.|.....|..|+++|.++++      |.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP------SGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCS------CSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            45677888888888888888888888888888888777      888766

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=2e-13  Score=60.87  Aligned_cols=45  Identities=18%  Similarity=0.240  Sum_probs=36.7

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|+.|++.|.....|..|+..|+++.+      |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCS------CCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            466778888888888888888888888888888888777      888765

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=3.1e-13  Score=60.19  Aligned_cols=45  Identities=18%  Similarity=0.279  Sum_probs=36.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|+.|++.|.....|..|+++|.++++      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKP------SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCC------SCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCC------CCCCCC
Confidence            366777888888888888888888888888888888777      888766

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1.7e-13  Score=61.12  Aligned_cols=45  Identities=16%  Similarity=0.222  Sum_probs=35.7

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|+.|++.|.....|..|+++|.++.+      |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCC------SSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            466777788888888888888888888888888877777      777766

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=2.8e-13  Score=60.33  Aligned_cols=45  Identities=18%  Similarity=0.294  Sum_probs=37.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++.+      |.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCC------SCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCC------CCCCCC
Confidence            466778888888888888888888888888888888877      888766

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=2.5e-13  Score=60.50  Aligned_cols=45  Identities=18%  Similarity=0.246  Sum_probs=36.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|+.|++.|.....|..|+++|.++++      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCC------CSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCC------CCCCCC
Confidence            466778888888888888888888888888888887777      888766

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=2.4e-13  Score=60.59  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=36.0

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|+.|++.|.....|..|+.+|.++.+      |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKP------SGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCC------SCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            466778888888888888888888888888888887777      788765

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=3.4e-13  Score=60.07  Aligned_cols=45  Identities=16%  Similarity=0.157  Sum_probs=34.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|.++|++++||.|..|++.|.....|..|+++|.++++      |.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT------SGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCC------CCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCC------CCCCCC
Confidence            356677777788888888888888888888877777777      777765

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.40  E-value=2.4e-13  Score=60.57  Aligned_cols=45  Identities=20%  Similarity=0.199  Sum_probs=34.2

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|..|++.|.....|..|+++|.++++      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSS------CSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            466777777778888888888888888888777777777      777765

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=3e-13  Score=60.24  Aligned_cols=45  Identities=18%  Similarity=0.238  Sum_probs=33.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCC------CSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCC------CCCCCC
Confidence            356677777777777777777777777777777777777      777765

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=3.2e-13  Score=60.17  Aligned_cols=45  Identities=22%  Similarity=0.245  Sum_probs=35.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSC------SCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            366777788888888888888888888888888877777      777765

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=2.7e-13  Score=60.39  Aligned_cols=45  Identities=20%  Similarity=0.321  Sum_probs=37.2

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSC------SSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCC------CCCCCC
Confidence            466778888888888888888888888888888888877      888776

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.40  E-value=3.9e-13  Score=59.87  Aligned_cols=45  Identities=18%  Similarity=0.237  Sum_probs=35.7

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCC------CSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCC------CCCCCC
Confidence            366777788888888888888888888888888887777      787765

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=2.5e-13  Score=60.50  Aligned_cols=45  Identities=16%  Similarity=0.191  Sum_probs=37.2

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|..|++.|.....|..|++.|.++.+      |.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSC------SSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCC------CCCCCC
Confidence            466778888888888888888888888888888888877      888776

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.7e-13  Score=59.95  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=36.9

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|..|++.|.....|..|+++|.++++      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSC------CSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            466778888888888888888888888888888888877      888766

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=4.2e-13  Score=59.78  Aligned_cols=45  Identities=18%  Similarity=0.246  Sum_probs=35.7

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCC------SSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            356777788888888888888888888888888887777      787766

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.39  E-value=3.6e-13  Score=60.00  Aligned_cols=45  Identities=16%  Similarity=0.256  Sum_probs=34.5

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|+.|++.|.....|..|+++|.++++      |.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCC------SSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            356677777788888888888888888888888877777      777765

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.39  E-value=3.6e-13  Score=59.95  Aligned_cols=45  Identities=18%  Similarity=0.275  Sum_probs=35.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|+++++      |.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP------SGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCC------SCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            366777788888888888888888888888888877777      777765

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.4e-13  Score=60.58  Aligned_cols=45  Identities=16%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|+.|++.|.....|..|+++|.++++      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSC------CCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCC------CCCCCC
Confidence            356677777777777777777777777777777777776      777765

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.4e-13  Score=60.05  Aligned_cols=45  Identities=16%  Similarity=0.192  Sum_probs=34.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|+.|++.|.....|..|+++|.++.+      |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH------SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSS------CCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCC------CCCCCC
Confidence            356677777788888888888888888888877777777      777765

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=4.6e-13  Score=59.62  Aligned_cols=45  Identities=13%  Similarity=0.195  Sum_probs=36.7

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|.++|.+++||.|..|++.|.....|..|+++|.++++      |.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP------SGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCS------SCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCC------CCCCCC
Confidence            466778888888888888888888888888888888877      888766

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.3e-13  Score=60.62  Aligned_cols=45  Identities=22%  Similarity=0.273  Sum_probs=33.6

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|+.|++.|.....|..|+.+|+++++      |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKP------SGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCS------SSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            356677777777787787777777777777777777777      777765

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.6e-13  Score=60.44  Aligned_cols=45  Identities=16%  Similarity=0.199  Sum_probs=36.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|+.|++.|.....|..|+.+|.++++      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKH------SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCC------SCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            466777888888888888888888888888888887777      788765

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.39  E-value=4.6e-13  Score=59.60  Aligned_cols=45  Identities=16%  Similarity=0.319  Sum_probs=35.7

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|..|++.|.....|..|+++|.++++      |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKP------SGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCC------CSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCC------CCCCCC
Confidence            366777888888888888888888888888888887777      787766

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.8e-13  Score=60.34  Aligned_cols=45  Identities=20%  Similarity=0.235  Sum_probs=34.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCC------CSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            356677777788888888888888888888777777777      777765

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.39  E-value=3.5e-13  Score=60.04  Aligned_cols=44  Identities=14%  Similarity=0.134  Sum_probs=31.7

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      |+++|.+++||.|+.|++.|.....|..|+++|.++++      |.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSC------SCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCC------cCCCCC
Confidence            55667777777777777777777777777777777666      777665

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=3.2e-13  Score=60.16  Aligned_cols=45  Identities=16%  Similarity=0.218  Sum_probs=37.4

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|.++|++++||.|..|++.|.....|..|++.|+++++      |.|..|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKP------SGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSC------CSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCC------CCCCCC
Confidence            466778888888888888888888888888888888877      888776

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.9e-13  Score=59.12  Aligned_cols=39  Identities=15%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|...+.|..|+++|++++||
T Consensus         1 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (42)
T 2yte_A            1 GSSGSSGEK-PYSCAECKETFSDNNRLVQHQKMHTVKSGP   39 (42)
T ss_dssp             CCSSSCSCC-SCBCTTTCCBCSSHHHHHHHHHHTSCCSSC
T ss_pred             CCcCcCCCC-CeECCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            455676666 888888888888888888888888888886

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.6e-13  Score=59.98  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|..|++.|.....|..|+++|.++.+      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP------SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCC------SCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCC------CCCCCC
Confidence            356777888888888888888888888888888888777      788765

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.9e-13  Score=59.87  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=34.9

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCC------SCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            356677778888888888888888888888888877777      777765

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=4.5e-13  Score=59.66  Aligned_cols=45  Identities=13%  Similarity=0.039  Sum_probs=37.2

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|+++++      |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN------SGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSC------CCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            466778888888888888888888888888888888877      888766

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.2e-12  Score=66.85  Aligned_cols=68  Identities=22%  Similarity=0.162  Sum_probs=56.0

Q ss_pred             CceecCCCcccccchhHHHHHHhh-hcCCCCCCC--CCccccCccCcccCCchhhHhhhhhhcCCCCccccC
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKN-SCKQKPQNL--DGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECD   86 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~-~~~~~~~~~--~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   86 (111)
                      ..+.|..|++.|.....|..|++. |.+..+...  -..|.|..|++.|.....|..|+++|++++ ||.|.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK-SGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCC-CCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCC-CCCCC
Confidence            346799999999999999999998 776543110  111689999999999999999999999987 99986

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.7e-13  Score=59.91  Aligned_cols=45  Identities=16%  Similarity=0.202  Sum_probs=33.6

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKP------SGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCS------CSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            356677777777787787777777777777777777777      777765

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=2.3e-13  Score=60.64  Aligned_cols=45  Identities=20%  Similarity=0.278  Sum_probs=33.0

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|+.|++.|.....|..|+++|.++++      |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCS------SCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            356667777777777777777777777777777777766      777665

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4.3e-13  Score=59.73  Aligned_cols=44  Identities=18%  Similarity=0.238  Sum_probs=32.4

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      |+++|.+++||.|+.|++.|.....|..|++.|.++++      |.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP------SGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCS------SCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCC------CCCCCC
Confidence            56667777777777777777777777777777777766      777665

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.1e-13  Score=60.22  Aligned_cols=45  Identities=18%  Similarity=0.237  Sum_probs=36.6

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|.++|+++++|.|..|++.|.....|..|+++|.++++      |.|..|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCC------SSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCC------CCCCCC
Confidence            466778888888888888888888888888888888777      888766

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.38  E-value=2.2e-13  Score=59.55  Aligned_cols=39  Identities=21%  Similarity=0.396  Sum_probs=30.0

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         1 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (42)
T 2el5_A            1 GSSGSSGEN-PYECSECGKAFNRKDQLISHQRTHAGESGP   39 (42)
T ss_dssp             CCSSSSSCC-SEECSSSCCEESSHHHHHHHHGGGCCCCSC
T ss_pred             CCCCCCCCC-CccCCCcChhhCCHHHHHHHHHhcCCCCCC
Confidence            345666665 788888888888888888888888888876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.38  E-value=6.4e-13  Score=59.17  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=35.6

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      |.++|+++++|.|+.|++.|.....|..|+++|.++++      |.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKP------SGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSC------CSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            56777888888888888888888888888888888777      888766

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.4e-13  Score=59.67  Aligned_cols=44  Identities=14%  Similarity=0.243  Sum_probs=31.6

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      |+++|++++||.|..|++.|.....|..|+++|.++.+      |.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENP------SGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCC------SCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            55667777777777777777777777777777777666      777665

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=4.9e-13  Score=59.50  Aligned_cols=45  Identities=20%  Similarity=0.183  Sum_probs=35.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|+.|++.|.....|..|+.+|+++++      |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKC------SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCS------SCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            366777788888888888888888888888888877777      777765

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.37  E-value=3.6e-13  Score=60.01  Aligned_cols=39  Identities=21%  Similarity=0.474  Sum_probs=20.4

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emk_A            3 SGSSGTGEK-PYECKECGKAFSQTTHLIQHQRVHTGEKPS   41 (46)
T ss_dssp             CCCCCSSSC-SCBCSSSCCBCSCHHHHHHHHHHHSSCCCS
T ss_pred             CCCccCCCC-ceECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            344444444 555555555555555555555555555554

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=6.7e-13  Score=59.10  Aligned_cols=45  Identities=18%  Similarity=0.135  Sum_probs=37.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|.++|.++++|.|+.|++.|.....|..|+++|.++++      |.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKL------SGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCC------CCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCC------CCCCCC
Confidence            356778888888888888888888888888888888877      888776

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.37  E-value=3.4e-13  Score=60.08  Aligned_cols=39  Identities=21%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emj_A            3 SGSSGTGEK-PFECAECGKSFSISSQLATHQRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCC-SEECSSSSCEESSHHHHHHHHHHHTTSCSS
T ss_pred             CCCCCCCCC-CEECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            556666655 777777777777777777777777777776

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.7e-13  Score=59.63  Aligned_cols=44  Identities=14%  Similarity=0.185  Sum_probs=33.4

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      |.++|.+++||.|..|++.|.....|..|+++|.++++      |.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP------SGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCC------CCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            56677777778888888888887778888777777777      777765

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2.8e-13  Score=59.82  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=34.5

Q ss_pred             hhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         71 RHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        71 ~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .|+++|.+++ +|.|.+|++.|...+.|..|+++|++++||
T Consensus         2 ~H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (44)
T 2epv_A            2 SSGSSGSGEK-PYECNECGKAFIWKSLLIVHERTHAGVSGP   41 (44)
T ss_dssp             CCCCCCCCCC-SEECSSSCCEESSHHHHHHHHGGGSSCSCC
T ss_pred             CCCcccCCCc-CeECCCCCcccCchHHHHHHHhHhcCCCCC
Confidence            3667777776 899999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.1e-13  Score=59.79  Aligned_cols=45  Identities=18%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|..|++.|.....|..|+++|.++++      |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSC------CCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC------CCCCCC
Confidence            355666777777777777777777777777777776666      677665

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4e-13  Score=59.83  Aligned_cols=45  Identities=20%  Similarity=0.239  Sum_probs=35.6

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|.++|.+++||.|+.|++.|.....|..|+++|.++++      |.|.+|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERP------SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCS------SCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCC------CCCCCC
Confidence            366777788888888888888888888888888887777      777766

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=3.8e-13  Score=59.93  Aligned_cols=39  Identities=31%  Similarity=0.391  Sum_probs=30.1

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em4_A            3 SGSSGTGQR-PYECIECGKAFKTKSSLICHRRSHTGEKPS   41 (46)
T ss_dssp             SCCCCCCSS-SEECSSSCCEESSHHHHHHHHHHHSSSSCC
T ss_pred             CccccCCCc-CcCCCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            566676666 788888888888888888888888888776

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.3e-13  Score=59.47  Aligned_cols=39  Identities=21%  Similarity=0.544  Sum_probs=34.3

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|.....|..|+++|++++||
T Consensus         2 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2en2_A            2 SSGSSGGEK-PYKCETCGARFVQVAHLRAHVLIHTGSGPS   40 (42)
T ss_dssp             CCCCCCSSC-SEECTTTCCEESSHHHHHHHTHHHHSCCSS
T ss_pred             CCcccCCCC-CEeCCCcChhhCCHHHHHHHHHHcCCCCCC
Confidence            566777776 999999999999999999999999999987

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=3.1e-13  Score=59.65  Aligned_cols=40  Identities=13%  Similarity=0.277  Sum_probs=33.1

Q ss_pred             hhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         71 RHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        71 ~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .|+++|.+++ ||.|..|++.|.....|..|+++|++++||
T Consensus         2 ~H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2yu5_A            2 SSGSSGAGEN-PFKCSKCDRVFTQRNYLVQHERTHARKSGP   41 (44)
T ss_dssp             CCSCCCSCCC-SEECSSSSCEESSSHHHHHHHHHCCCCCSS
T ss_pred             CCccccCCCC-CeECCCCCchhCCHHHHHHHhHhcCCCCCC
Confidence            3667777766 888888998888888888888888888886

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=4.3e-13  Score=59.16  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=20.1

Q ss_pred             hhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         74 RYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      ++|.+++ ||.|..|++.|...+.|..|+++|++++||
T Consensus         3 ~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (44)
T 2emx_A            3 SGSSGEK-PFGCSCCEKAFSSKSYLLVHQQTHAEEKPS   39 (44)
T ss_dssp             CCCSSCC-CEECSSSSCEESSHHHHHHHHHHHTSSCSC
T ss_pred             CCcCCCc-CccCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            3444444 555555555555555555555555555554

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.7e-13  Score=59.96  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=23.9

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emh_A            3 SGSSGTGER-PYICTVCGKAFTDRSNLIKHQKIHTGEKPS   41 (46)
T ss_dssp             CCCSCSCCC-SEECTTTCCEESSHHHHHHHHHHHHCSSCS
T ss_pred             CCCCCCCCC-CcCCCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            445555544 666666666666666666666666666665

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.7e-13  Score=59.97  Aligned_cols=39  Identities=21%  Similarity=0.384  Sum_probs=22.7

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoo_A            3 SGSSGSGER-PYGCNECGKNFGRHSHLIEHLKRHFREKSS   41 (46)
T ss_dssp             CCCCCSCCC-CEECSSSCCEESSHHHHHHHHHHHHSTTSS
T ss_pred             CCCCCCCCC-CEEccccCcccCCHHHHHHHHHHHcCCCCC
Confidence            444555544 566666666666666666666666666554

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.9e-13  Score=59.86  Aligned_cols=39  Identities=21%  Similarity=0.347  Sum_probs=21.3

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytj_A            3 SGSSGTGEK-PYICAECGKAFTIRSNLIKHQKIHTKQKPS   41 (46)
T ss_dssp             SSCTTSSCC-SEECSSSCCEESSHHHHHHHHHHTSCCCCS
T ss_pred             cccCCCCCc-CeECCCCChhhCCHHHHHHHHHHcCCCCCC
Confidence            444454444 555555555555555555555555555554

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4e-13  Score=59.82  Aligned_cols=39  Identities=23%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emp_A            3 SGSSGTGVK-PYMCNECGKAFSVYSSLTTHQVIHTGEKPS   41 (46)
T ss_dssp             CCSCSSCCC-SEECSSSCCEESCHHHHHHHHHHHHCCSCC
T ss_pred             cccccCCCc-CeECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            444555544 566666666666666666666666666554

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.36  E-value=5.7e-13  Score=59.34  Aligned_cols=39  Identities=21%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ely_A            3 SGSSGTGEK-PFKCVECGKGFSRRSALNVHHKLHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCC-SBCCSSSCCCBSSTTHHHHHHHHHSCCSSC
T ss_pred             CCCCCCCCC-CcccCccCcccCCHHHHHHHHHHcCCCCCC
Confidence            344444444 555555555555555555555555555554

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.8e-13  Score=59.88  Aligned_cols=39  Identities=26%  Similarity=0.468  Sum_probs=28.9

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eow_A            3 SGSSGTGEK-PYKCNECGKAFRARSSLAIHQATHSGEKPS   41 (46)
T ss_dssp             CCCCSCCCC-CEECTTSCCEESSHHHHHHHHHHHCCCSCS
T ss_pred             ccCCCCCCC-CeeccccCChhcCHHHHHHHHHHcCCCCCC
Confidence            556666655 777777777777777777777777777776

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.8e-13  Score=59.90  Aligned_cols=39  Identities=21%  Similarity=0.438  Sum_probs=28.7

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~~-~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em3_A            3 SGSSGTGEK-PYECKVCSKAFTQKAHLAQHQKTHTGEKPS   41 (46)
T ss_dssp             CCCCCSSCC-SEECSSSCCEESSHHHHHHHHHHHCCCCCC
T ss_pred             CCCCCCCCc-CeECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            556666655 777777777777777777777777777776

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.9e-13  Score=59.26  Aligned_cols=40  Identities=23%  Similarity=0.424  Sum_probs=33.2

Q ss_pred             hhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         71 RHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        71 ~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .|+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         2 ~H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eof_A            2 SSGSSGTGEK-PYECNECQKAFNTKSNLMVHQRTHTGESGP   41 (44)
T ss_dssp             CCSSCCSCCC-SEECTTTCCEESCHHHHHHHHHHTTTSSCS
T ss_pred             CCccCCCCCC-CeECCCCCcccCCHhHHHHHHHHhCCCCCC
Confidence            3566777766 889999999998888999998888888886

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.9e-13  Score=59.87  Aligned_cols=39  Identities=21%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emy_A            3 SGSSGTGEN-PYECHECGKAFSRKYQLISHQRTHAGEKPS   41 (46)
T ss_dssp             CCCCCCSSC-CEECSSSCCEESSHHHHHHHHHHHTTSCCS
T ss_pred             CCCCCCCCc-CcCCCCCCcccCcHHHHHHHHHHcCCCCCC
Confidence            344454444 555555665555555555555555555554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3.4e-13  Score=60.09  Aligned_cols=39  Identities=15%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eoz_A            3 SGSSGTGEK-PYSCNVCGKAFVLSAHLNQHLRVHTQETLS   41 (46)
T ss_dssp             SCCCCSSCC-SEEETTTTEEESSHHHHHHHHHHHSSCCSS
T ss_pred             ccccCCCCC-CeECcccChhhCCHHHHHHHHHHhCCCCCC
Confidence            566666665 788888888888888888888888877776

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.4e-13  Score=59.70  Aligned_cols=39  Identities=18%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~~-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoq_A            3 SGSSGTGEK-PFKCDICGKSFCGRSRLNRHSMVHTAEKPS   41 (46)
T ss_dssp             CCCCSSSSC-SCCCSSSCCCCSSHHHHHHHHHHTTCCCSS
T ss_pred             CCCCCCCCC-CcCCCcCCchhCCHHHHHHHHHHcCCCCCC
Confidence            334444443 555555555555555555555555555544

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.35  E-value=4.5e-13  Score=58.47  Aligned_cols=39  Identities=21%  Similarity=0.264  Sum_probs=34.0

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         2 H~~~H~~~~-~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~   40 (42)
T 2epc_A            2 SSGSSGGET-PYLCGQCGKSFTQRGSLAVHQRSCSQSGPS   40 (42)
T ss_dssp             CCSCCCSSC-CEECSSSCCEESSHHHHHHHHHHTTCCCCC
T ss_pred             CCccCCCCC-CeECCCCCcccCCHHHHHHHhhhcCCCCCC
Confidence            556777766 899999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.3e-13  Score=59.71  Aligned_cols=39  Identities=23%  Similarity=0.454  Sum_probs=19.1

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eq4_A            3 SGSSGTGEK-LYNCKECGKSFSRAPCLLKHERLHSGEKPS   41 (46)
T ss_dssp             CCCCSSCCC-CCCBTTTTBCCSCHHHHHHHHHHCCSSSCC
T ss_pred             CcccCCCCC-CeECCCCCCccCchHHHHHHHHhcCCCCCC
Confidence            334444443 455555555555555555555555555544

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=8.6e-13  Score=58.73  Aligned_cols=45  Identities=18%  Similarity=0.238  Sum_probs=35.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|++++||.|..|++.|.....|..|+++|.++++      |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCC------CCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            366777888888888888888888888888888887777      777754

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.3e-13  Score=59.76  Aligned_cols=39  Identities=21%  Similarity=0.391  Sum_probs=28.8

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yto_A            3 SGSSGTGEK-PYKCSDCGKAFTRKSGLHIHQQSHTGERHS   41 (46)
T ss_dssp             CCCCCCSCC-CEECSSSCCEESSHHHHHHHHHHHTCCCBT
T ss_pred             cccccCCCC-CEECcccCCccCCHhHHHHHHHHcCCCCCC
Confidence            556666655 777777777777777777777777777776

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.9e-13  Score=59.55  Aligned_cols=39  Identities=26%  Similarity=0.528  Sum_probs=27.8

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|.+|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoh_A            3 SGSSGSGKK-PYECKECRKTFIQIGHLNQHKRVHTGERSS   41 (46)
T ss_dssp             CCCSCCCSC-SCCCSSSCCCCSSHHHHHHHHHHCSSCCSC
T ss_pred             CCCCcCCCC-CcCCCCcCchhCCHHHHHHHHHHhCCCCCC
Confidence            455666655 777777777777777777777777777775

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.35  E-value=1.8e-12  Score=59.71  Aligned_cols=47  Identities=19%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             hcCCCCceecCCCcccccchhHHHHHHh-hhcCCCCCCCCCccccCccCcccCC
Q psy12016         13 WQNDSGMFTCDVCFKEYKYKRGLVRHKK-NSCKQKPQNLDGLFSCDVCGKHYKY   65 (111)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~-~~~~~~~~~~~~~~~c~~c~~~~~~   65 (111)
                      .+..++||.|..|++.|.....|..|++ .|.++++      |.|.+|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~------~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP------HKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC------CCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCC------ccCCCCCCCCCC
Confidence            3455666666666666666666666664 6666666      666666666543

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.7e-13  Score=59.56  Aligned_cols=39  Identities=15%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emm_A            3 SGSSGTGER-PHKCNECGKSFIQSAHLIQHQRIHTGEKPS   41 (46)
T ss_dssp             CCSCSSCCC-SEECSSSCCEESSHHHHHHHHHHHSCCCTT
T ss_pred             CcCCcCCCC-CeeCCCCChhhCCHHHHHHHHHHhCCCCCC
Confidence            344444443 555555555555555555555555555544

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=5.1e-13  Score=59.47  Aligned_cols=39  Identities=23%  Similarity=0.511  Sum_probs=29.4

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~~-~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   41 (46)
T 2eor_A            3 SGSSGTGEK-PYNCEECGKAFIHDSQLQEHQRIHTGEKPS   41 (46)
T ss_dssp             SSSSSSCCC-SEECTTTCCEESSHHHHHHHHHHHHSCCCS
T ss_pred             CCcCcCCCc-CccCCCCCCCcCCHHHHHHHHHhcCCCCCC
Confidence            556666665 778888888887777888888777777776

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.35  E-value=3.6e-13  Score=59.99  Aligned_cols=34  Identities=21%  Similarity=0.556  Sum_probs=16.9

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |.|..|++.|.....|..|+++|.+++ ||.|+.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~c   46 (46)
T 2ema_A           13 YKCNECGKVFSRNSQLSQHQKIHTGEK-PSGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTGGGCCC-CCSSSCC
T ss_pred             cCCCCCcchhCCHHHHHHHHHhcCCCC-CCCCCCC
Confidence            555555555555555555555544444 4554443

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3.7e-13  Score=59.95  Aligned_cols=39  Identities=21%  Similarity=0.469  Sum_probs=24.7

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2enf_A            3 SGSSGTGEK-PYKCNECGKVFTQNSHLVRHRGIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCC-SCBCSSSCCBCSSHHHHHHHHTTTTTSSCC
T ss_pred             CCcCCCCCc-CeECCCCCcccCCHHHHHHHHHhhCCCCCC
Confidence            445555554 666666666666666666666666666665

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=6.2e-13  Score=59.18  Aligned_cols=39  Identities=21%  Similarity=0.399  Sum_probs=19.3

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~~-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eov_A            3 SGSSGTGEK-PYKCSDCGKSFTWKSRLRIHQKCHTGERHS   41 (46)
T ss_dssp             CCCCCSSCC-SCBCSSSCCBCSSHHHHHHHHHHHSCCSSC
T ss_pred             CCCCCCCCC-CccCCccChhhCCHHHHHHHHHhcCCCCCC
Confidence            334444433 555555555555555555555555555544

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3.1e-13  Score=60.19  Aligned_cols=39  Identities=21%  Similarity=0.422  Sum_probs=20.5

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ep3_A            3 SGSSGTGEK-PYRCAECGKAFTDRSNLFTHQKIHTGEKPS   41 (46)
T ss_dssp             CCSSSSCCC-SEECSSSCCEESSHHHHHHHHTTTTTSCCC
T ss_pred             CCCCCCCCC-CeECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            344444444 555555555555555555555555555554

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=7.3e-13  Score=58.98  Aligned_cols=39  Identities=21%  Similarity=0.468  Sum_probs=28.0

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 h~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2en9_A            3 SGSSGAGKK-LFKCNECKKTFTQSSSLTVHQRIHTGEKPS   41 (46)
T ss_dssp             CCSSCCSSC-CCBCTTTCCBCSSHHHHHHHHHHHTSSCCC
T ss_pred             CCCCCCCCC-CEECCccCcccCCHHHHHHHHHHcCCCCCC
Confidence            455666655 777777777777777777777777777776

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.6e-13  Score=59.62  Aligned_cols=39  Identities=23%  Similarity=0.446  Sum_probs=20.0

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ep2_A            3 SGSSGTGEK-PYECSICGKSFTKKSQLHVHQQIHTGEKPS   41 (46)
T ss_dssp             SSSCSSCCC-SEECSSSCCEESSHHHHHHHHHTTSSCCSC
T ss_pred             CCCCCCCCc-CcCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            344444444 555555555555555555555555555554

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=5e-13  Score=59.50  Aligned_cols=39  Identities=21%  Similarity=0.470  Sum_probs=22.1

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~~-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytk_A            3 SGSSGSGEK-PYKCNECGKVFTQNSHLTNHWRIHTGEKPS   41 (46)
T ss_dssp             CCCCSSSSC-SEECSSSCCEESSHHHHHHHHHHHSSSSCS
T ss_pred             CcccCCCCC-CEeCCcCCCccCCHHHHHHHHHHHCCCCCC
Confidence            444454444 566666666666666666666665555554

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=6.1e-13  Score=59.44  Aligned_cols=45  Identities=18%  Similarity=0.218  Sum_probs=33.6

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHh-hhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKK-NSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~-~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|.++|.+++||.|..|++.|.....|..|++ .|.++++      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~------~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP------SGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS------SSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCC------CCCCCC
Confidence            35667777777888888888888777877777 7777776      777765

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=5.7e-13  Score=59.31  Aligned_cols=39  Identities=18%  Similarity=0.469  Sum_probs=20.6

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytd_A            3 SGSSGSGEK-PYKCSECGKAFHRHTHLNEHRRIHTGYRPS   41 (46)
T ss_dssp             CCCCSCCCC-SEECSSSCCEESSHHHHHHHHHHHTCCCSS
T ss_pred             CccccCCCc-CeECCCCCCeeCChHHHHHHHHHcCCCCCC
Confidence            344444444 555555555555555555555555555554

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.4e-13  Score=59.69  Aligned_cols=40  Identities=18%  Similarity=0.370  Sum_probs=31.9

Q ss_pred             hhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         71 RHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        71 ~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .|+++|.+++ ||.|..|++.|.....|..|+++|++++||
T Consensus         2 ~H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2en3_A            2 SSGSSGTGEK-PFQCKECGMNFSWSCSLFKHLRSHERTDPS   41 (46)
T ss_dssp             CCCCCSCCCC-SEECSSSCCEESSSHHHHHHHHHHHHSCCS
T ss_pred             ccccccCCCC-CeeCcccChhhCCHHHHHHHHHHhCCCCCC
Confidence            3566777766 888888888888888888888888888876

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.6e-13  Score=59.60  Aligned_cols=39  Identities=23%  Similarity=0.445  Sum_probs=24.3

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ep1_A            3 SGSSGTGEK-PYECSDCGKSFIKKSQLHVHQRIHTGENPS   41 (46)
T ss_dssp             CCCCCSSCC-SSCCSSSCCCCSSHHHHHHHHGGGSSSCCC
T ss_pred             cccCCCCCC-CcCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            445555554 666666666666666666666666666665

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.4e-13  Score=60.11  Aligned_cols=39  Identities=23%  Similarity=0.460  Sum_probs=24.8

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytp_A            3 SGSSGTGER-HYECSECGKAFARKSTLIMHQRIHTGEKPS   41 (46)
T ss_dssp             CCCSSCCCC-CEECSSSCCEESSHHHHHHHHTTTSCCCCC
T ss_pred             cccCcCCCC-CeECCcCCcccCCHHHHHHHHHHhCCCCCC
Confidence            455555554 666666666666666666666666666665

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.3e-13  Score=59.50  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=30.1

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2en7_A            3 SGSSGTGMK-PYVCNECGKAFRSKSYLIIHTRTHTGESGP   41 (44)
T ss_dssp             SCCCSSSSS-SSCCTTTCCCCSSHHHHHHHHTTTCCSSSS
T ss_pred             CCcCCCCCc-CeECCCCCCccCCHHHHHHHhhhcCCCCCC
Confidence            566666666 788888888888888888888888888776

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.6e-13  Score=59.61  Aligned_cols=39  Identities=21%  Similarity=0.405  Sum_probs=28.3

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytf_A            3 SGSSGTGEK-PFECSECQKAFNTKSNLIVHQRTHTGEKPS   41 (46)
T ss_dssp             CCCSSCCCC-SEECSSSCCEESSHHHHHHHHHTSCSSSSS
T ss_pred             CCCCCCCCC-CcCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            555666655 777777777777777777777777777775

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.7e-13  Score=59.60  Aligned_cols=39  Identities=23%  Similarity=0.477  Sum_probs=26.0

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~~-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emi_A            3 SGSSGTGER-HYECSECGKAFIQKSTLSMHQRIHRGEKPS   41 (46)
T ss_dssp             CCCSCSSCC-CEECSSSCCEESSHHHHHHHHGGGCSCCCC
T ss_pred             CCcccCCCC-CCCCCCCCcccCCHHHHHHHHhHhCCCCCC
Confidence            455565555 677777777777777777777777766665

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.5e-13  Score=59.68  Aligned_cols=39  Identities=21%  Similarity=0.451  Sum_probs=19.6

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2yu8_A            3 SGSSGTGEK-PYKCNECGKVFTQNSHLARHRRVHTGGKPS   41 (46)
T ss_dssp             CCCCCCCCS-SEECSSSCCEESSSHHHHHHTHHHHSCCCS
T ss_pred             cCcCCCCCC-CeECCcCCchhCCHHHHHHHHHhcCCCCCC
Confidence            334444443 555555555555555555555555555544

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.7e-13  Score=59.84  Aligned_cols=39  Identities=26%  Similarity=0.482  Sum_probs=29.7

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|...+.|..|+++|++++||
T Consensus         2 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2ytb_A            2 SSGSSGGEK-PYRCDQCGKAFSQKGSLIVHIRVHTGSGPS   40 (42)
T ss_dssp             CCCCCCSCC-SBCCTTTTCCBSSHHHHHTTGGGTSCCSCC
T ss_pred             CccccCCCC-CeeCCCccchhCCHHHHHHHHHHhCCCCCC
Confidence            556666665 788888888888888888888888888776

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.6e-13  Score=59.66  Aligned_cols=39  Identities=23%  Similarity=0.463  Sum_probs=24.1

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em6_A            3 SGSSGMGEK-CYKCDVCGKEFSQSSHLQTHQRVHTGEKPS   41 (46)
T ss_dssp             CCSCCCCCC-CCBCSSSCCBCSSHHHHHHHHTTTSSSCCC
T ss_pred             CccccCCCC-CeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            445555544 666666666666666666666666666665

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=5.5e-13  Score=59.39  Aligned_cols=39  Identities=21%  Similarity=0.411  Sum_probs=30.4

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 h~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emz_A            3 SGSSGSGER-PFKCNECGKGFGRRSHLAGHLRLHSREKSS   41 (46)
T ss_dssp             CCSCSSCCC-SCCCSSSCCCCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCcCCCCCC-CeECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            566676666 788888888888888888888888888776

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=5.5e-13  Score=59.36  Aligned_cols=39  Identities=15%  Similarity=0.199  Sum_probs=20.0

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2epw_A            3 SGSSGTGEK-PCKCTECGKAFCWKSQLIMHQRTHVDDKHS   41 (46)
T ss_dssp             CCCCCCCCC-SEECSSSCCEESSSHHHHHHHHHCCSCCCS
T ss_pred             CcccCCCCC-CeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            344444444 555555555555555555555555555544

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.7e-12  Score=57.77  Aligned_cols=45  Identities=18%  Similarity=0.217  Sum_probs=37.0

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .|+++|+++++|.|..|++.|.....|..|++.|.++++      |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCS------SCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            466778888888888888888888888888888888877      888754

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.2e-13  Score=59.77  Aligned_cols=39  Identities=18%  Similarity=0.393  Sum_probs=23.2

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2emg_A            3 SGSSGTGEN-PFICSECGKVFTHKTNLIIHQKIHTGERPS   41 (46)
T ss_dssp             CCCCCCSCC-SCBCTTTCCBCSSHHHHHHHHTTTSCCCCS
T ss_pred             CCCCCCCCC-CEECCccCcccCCHHHHHHHHHHhCCCCCC
Confidence            444555544 666666666666666666666666666654

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.8e-13  Score=59.89  Aligned_cols=39  Identities=21%  Similarity=0.483  Sum_probs=21.3

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq2_A            3 SGSSGTGGK-PYQCNECGKAFSQTSKLARHQRVHTGEKPS   41 (46)
T ss_dssp             CCCSSSSSC-SSSCCSSCCCCSSHHHHHHHGGGGCCCCCC
T ss_pred             cccccCCCC-CeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            344444444 555555555555555555555555555554

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=7.5e-13  Score=58.93  Aligned_cols=39  Identities=15%  Similarity=0.455  Sum_probs=25.2

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em2_A            3 SGSSGSGEK-PFKCKECGKAFRQNIHLASHLRIHTGEKPS   41 (46)
T ss_dssp             CCCSCCCCC-SEECSSSCCEESSHHHHHHHHHHHCCCCSS
T ss_pred             CCCCCCCCC-CEECCcCCchhCCHHHHHHHHHHhCCCCCC
Confidence            455555555 666666666666666666666666666665

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=9e-13  Score=58.70  Aligned_cols=39  Identities=23%  Similarity=0.402  Sum_probs=21.0

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|...+.|..|+++|++++||
T Consensus         3 h~~~h~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytm_A            3 SGSSGTGEK-PYKCMECGKAFGDNSSCTQHQRLHTGQRPS   41 (46)
T ss_dssp             SCCCCSSCC-SSSBTTTTBCCSSHHHHHHHHHHHHSCCCC
T ss_pred             CCcCCCCCC-CcCCCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            344444444 555555555555555555555555555554

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.2e-13  Score=59.75  Aligned_cols=39  Identities=21%  Similarity=0.480  Sum_probs=23.3

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yti_A            3 SGSSGTGEK-PYKCNECGKVFTQNSHLARHRGIHTGEKPS   41 (46)
T ss_dssp             CCCCCSCCC-TTCCSSSCCCCSSHHHHHHHHTTTSCSCCS
T ss_pred             CCcCCCCCc-CeECCCCCcccCChhHHHHHhHhcCCCCCC
Confidence            444555544 666666666666666666666666666654

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=3.7e-13  Score=58.79  Aligned_cols=39  Identities=26%  Similarity=0.624  Sum_probs=31.6

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|...+.|..|+++|++++||
T Consensus         2 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2eos_A            2 SSGSSGGEK-PYPCEICGTRFRHLQTLKSHLRIHTGSGPS   40 (42)
T ss_dssp             CCSCCSSSC-CBCCSSSCCCBSSHHHHHHHTTTTSCCSST
T ss_pred             CCcccCCCC-CEECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            456676766 888888888888888888888888888886

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.6e-13  Score=59.66  Aligned_cols=39  Identities=21%  Similarity=0.503  Sum_probs=21.7

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yth_A            3 SGSSGSGEK-PFQCEECGKRFTQNSHLHSHQRVHTGEKPS   41 (46)
T ss_dssp             CCSCCCCSS-SBCCSSSCCCBSSHHHHHHHGGGGTTCCCS
T ss_pred             cccCCCCCc-CCCCCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            344454444 555555555555555555555555555554

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.4e-13  Score=59.68  Aligned_cols=39  Identities=21%  Similarity=0.497  Sum_probs=23.1

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq1_A            3 SGSSGTGEK-PYKCNECGKAFRAHSNLTTHQVIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCSC-CCCCTTTTCCCSSHHHHHHHHTTTCCSCCS
T ss_pred             cccccCCCC-CeECCcCChhhCCHHHHHHHHHHhCCCCCC
Confidence            444555544 666666666666666666666666666654

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.7e-13  Score=59.58  Aligned_cols=39  Identities=18%  Similarity=0.460  Sum_probs=25.3

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~~-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yrj_A            3 SGSSGTGEK-PYRCGECGKAFAQKANLTQHQRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCC-CEECSSSCCEESSHHHHHHHHTTTSSCCSS
T ss_pred             CccCCCCCC-CeECCCCCCccCCHHHHHHHHHHcCCCCCC
Confidence            455555555 666666666666666666666666666665

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.7e-13  Score=59.01  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eoj_A            3 SGSSGTGEN-PYECCECGKVFSRKDQLVSHQKTHSGQSGP   41 (44)
T ss_dssp             SCCSSSSCC-SCEETTTTEECSSHHHHHHHHTTSSSSCSC
T ss_pred             CccccCCCc-CeeCCCCCCccCCHHHHHHHHHHcCCCCCC
Confidence            566777766 888888888888888888888888888876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1e-12  Score=58.50  Aligned_cols=39  Identities=18%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~~-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yso_A            3 SGSSGSREK-SHQCRECGEIFFQYVSLIEHQVLHMGQKNS   41 (46)
T ss_dssp             CSCCSSCCC-CEECTTTCCEESSHHHHHHHHHHHSCCSCC
T ss_pred             cccccCCCC-CEEccccChhhCCHHHHHHHHHHhCCCCCC
Confidence            344444444 555555555555555555555555555554

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.6e-12  Score=57.86  Aligned_cols=44  Identities=23%  Similarity=0.357  Sum_probs=37.4

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++.+      |.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~------~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKP------SGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCC------CCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCC------CCCCC
Confidence            467788888899999999999999999999988888887      88764

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.32  E-value=3.5e-12  Score=61.97  Aligned_cols=50  Identities=28%  Similarity=0.583  Sum_probs=30.1

Q ss_pred             cccCc--cCcccCCchhhHhhhhhhcCCCCccccCC--CCcccccchhHHHHHHH
Q psy12016         54 FSCDV--CGKHYKYKKGLGRHKRYECGQEPKYECDQ--CPHRTKHISSLKKHMAL  104 (111)
Q Consensus        54 ~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~  104 (111)
                      |.|..  |++.|.....|..|+++|.+++ +|.|.+  |++.|.....|..|+++
T Consensus        18 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           18 HICSHPGCGKTYFKSSHLKAHTRTHTGEK-PFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             EECSSTTTCCEESSHHHHHHHHHHHSSSC-SEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             eeCCCCCCccccCCHHHHHHHHHhcCCCC-CccCCCCCCCcccCCHHHHHhHhhc
Confidence            56655  6666666666666666665554 666643  66666666666666544

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=7e-13  Score=59.02  Aligned_cols=39  Identities=21%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 h~~~H~~~~-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2en6_A            3 SGSSGSGEK-PYGCNECGKTFSQKSILSAHQRTHTGEKPS   41 (46)
T ss_dssp             CSCCCCSSC-CEEETTTTEEESSHHHHHHHHHHHSSCCCS
T ss_pred             CCCccCCCc-CeECCCCCcccCchHHHHHHHHHcCCCCCC
Confidence            344444444 555555555555555555555555555554

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.2e-12  Score=57.73  Aligned_cols=39  Identities=26%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 h~~~h~~~~-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (44)
T 2eou_A            3 SGSSGAAKT-TSECQECGKIFRHSSLLIEHQALHAGESGP   41 (44)
T ss_dssp             CSCSCSSSC-CCCCTTTCCCCSSHHHHHHHHHHHTTSCCC
T ss_pred             CCCCCCCCc-CeECCCCCcccCCHHHHHHHHHHHCCCCCC
Confidence            456676666 888888888888888888888888888886

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.32  E-value=1.4e-13  Score=65.30  Aligned_cols=54  Identities=15%  Similarity=0.243  Sum_probs=40.5

Q ss_pred             HHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhh
Q psy12016          7 LEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGL   69 (111)
Q Consensus         7 l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l   69 (111)
                      |+.|.++|.+++||.|+.|++.|.....|.   ..|.++.+      |.|..|++.|.....+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~------~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGT------FRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTE------EBCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCC------EECCCCCCccccCccc
Confidence            456777888888888888888888877665   56777777      8888888877665543

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4e-13  Score=59.28  Aligned_cols=40  Identities=15%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             hhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         71 RHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        71 ~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .|+++|.+++ ||.|..|++.|.....|..|+++|++++||
T Consensus         2 ~H~~~H~~~~-~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eox_A            2 SSGSSGTDSK-SYNCNECGKAFTRIFHLTRHQKIHTRKSGP   41 (44)
T ss_dssp             CCCCCCCCCC-CEEETTTTEEESSSHHHHTTHHHHCCCCCC
T ss_pred             CCCcCCCCCC-CeECcccCcccCCHHHHHHHHHHhCCCCCC
Confidence            3566676766 888888888888888888888888888876

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.9e-13  Score=59.31  Aligned_cols=38  Identities=21%  Similarity=0.443  Sum_probs=21.3

Q ss_pred             hhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         73 KRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        73 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +++|.+++ +|.|.+|++.|.....|..|+++|++++||
T Consensus         4 ~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eon_A            4 GSSGTGEK-PYKCQVCGKAFRVSSHLVQHHSVHSGERPS   41 (46)
T ss_dssp             SSSCSSCC-SCBCSSSCCBCSSHHHHHHHTTTTTSCCSC
T ss_pred             CCCCCCCc-ccCCCCCCcccCcHHHHHHHHHhcCCCCCC
Confidence            44444444 555555555555555555555555555554

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.32  E-value=1e-12  Score=63.90  Aligned_cols=58  Identities=28%  Similarity=0.512  Sum_probs=52.2

Q ss_pred             hcCCCCceecCC--CcccccchhHHHHHHhhhcCCCCCCCCCccccCc--cCcccCCchhhHhhhhhh
Q psy12016         13 WQNDSGMFTCDV--CFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV--CGKHYKYKKGLGRHKRYE   76 (111)
Q Consensus        13 ~~~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~   76 (111)
                      .....++|.|..  |++.|.....|..|++.|.++.+      |.|..  |++.|.....|..|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP------FSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCS------EECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCC------ccCCCCCCCcccCCHHHHHhHhhcC
Confidence            345678899998  99999999999999999999998      99965  999999999999998764

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.9e-13  Score=59.52  Aligned_cols=39  Identities=21%  Similarity=0.451  Sum_probs=22.0

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~   41 (46)
T 2yts_A            3 SGSSGTGEK-PYICNECGKSFIQKSHLNRHRRIHTGEKPS   41 (46)
T ss_dssp             CSCCCCSCC-SEECSSSCCEESSHHHHHHHGGGTSSCCSS
T ss_pred             CCCCCCCCc-CEECCCCChhhCChHHHHHHHHhcCCCCCc
Confidence            344454444 566666666666666666665555555554

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1e-12  Score=58.47  Aligned_cols=39  Identities=15%  Similarity=0.319  Sum_probs=20.6

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|...+.|..|+++|++++||
T Consensus         3 h~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2enc_A            3 SGSSGSGEK-PFKCEECGKGFYTNSQCYSHQRSHSGEKPS   41 (46)
T ss_dssp             CSSCCCCCC-SEECSSSCCEESSHHHHHHHHHHSCCSSCC
T ss_pred             CCCCCCCCC-CcCCCCCCCcCCChHHHHHHHHHhCCCCCC
Confidence            344444444 555555555555555555555555555554

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.31  E-value=2.3e-12  Score=57.07  Aligned_cols=43  Identities=19%  Similarity=0.226  Sum_probs=33.5

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccC
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCG   60 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~   60 (111)
                      ..|++++||.|..|++.|.....|..|+++|.++.+      |.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~------~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG------KSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCC------CCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCC------CCCcCCC
Confidence            356677788888888888888888888888887777      7887775

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.4e-12  Score=58.06  Aligned_cols=38  Identities=21%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             hhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         73 KRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        73 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         4 ~~~h~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em8_A            4 GSSGSGEK-PYKCVECGKGYKRRLDLDFHQRVHTGEKLS   41 (46)
T ss_dssp             CCCCCSCC-SEECSSSCCEESSHHHHHHHHHHHHCCCCC
T ss_pred             CCCCCCCC-CeECcccCchhCCHHHHHHHHHHHcCCCCC
Confidence            34444444 555555555555555555555555555554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8.8e-13  Score=58.69  Aligned_cols=44  Identities=23%  Similarity=0.516  Sum_probs=27.2

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|.++++      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus         3 H~~~H~~~k~------~~C~~C~k~F~~~~~L~~H~~~H~~~k-~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKP------YKCNECGKVFTQNSHLARHRGIHTGEK-PSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSS------CBCTTTCCBCSSHHHHHHHGGGTSCCC-CCSCCCC
T ss_pred             CCcCCCCCcC------eECCCCCCeeCCHHHHHHHhhhcCCCC-CCCCCCC
Confidence            4445555555      666666666666666666666666655 6666655

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.30  E-value=9.6e-13  Score=58.56  Aligned_cols=44  Identities=14%  Similarity=0.292  Sum_probs=26.4

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|.++++      |.|..|++.|.....|..|+++|.+++ ||.|..|
T Consensus         3 H~~~H~~~k~------~~C~~C~k~F~~~~~L~~H~~~H~~~~-~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKT------WKCRECDMCFSQASSLRLHQNVHVGEK-PSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCC------CCCSSSCCCCSSHHHHHHHGGGGSSSS-CSCSSCC
T ss_pred             CcCccCCCcC------eECCCCCcccCCHHHHHHHHHHcCCCC-CcCCCCC
Confidence            4445555555      666666666666666666666665555 6666554

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=7.3e-13  Score=58.42  Aligned_cols=39  Identities=15%  Similarity=0.291  Sum_probs=28.2

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2emb_A            3 SGSSGHTRK-RYECSKCQATFNLRKHLIQHQKTHAAKSGP   41 (44)
T ss_dssp             CCSCCCCCS-SEECTTTCCEESCHHHHHHHGGGGCCCCCT
T ss_pred             cccccCCCC-CeECCCCCCccCCHHHHHHHHHHcCCCCCc
Confidence            556666655 777777777777777777777777777775

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.5e-13  Score=59.11  Aligned_cols=39  Identities=31%  Similarity=0.524  Sum_probs=24.9

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |+++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq3_A            3 SGSSGTGEK-PYECNQCGKAFSVRSSLTTHQAIHTGKKPS   41 (46)
T ss_dssp             CCCSSCCCC-SSEETTTTEECSSHHHHHHHHTTSCCCCCC
T ss_pred             cccCCCCCC-CeECCCCChhhCCHHHHHHHHHHhCCCCCC
Confidence            455555554 666666666666666666666666666665

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.6e-13  Score=58.75  Aligned_cols=38  Identities=29%  Similarity=0.569  Sum_probs=21.4

Q ss_pred             hhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         73 KRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        73 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         4 ~~~h~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2enh_A            4 GSSGTGEK-PYECDVCRKAFSHHASLTQHQRVHSGEKPS   41 (46)
T ss_dssp             CCCCCCSS-SCBCTTTCCBCSSSHHHHHHGGGSCCSCCC
T ss_pred             CCCcCCCC-CcCCCCcCchhCCHHHHHHHHHHhCCCCCC
Confidence            34444444 566666666666655666665555555554

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8e-13  Score=58.83  Aligned_cols=34  Identities=26%  Similarity=0.636  Sum_probs=18.6

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |.|..|++.|.....|..|+++|.+++ ||.|..|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~C   46 (46)
T 2eml_A           13 YECSVCGKAFSHRQSLSVHQRIHSGKK-PSGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGGSSCC-CSCSSCC
T ss_pred             eeCCCcCCccCCHHHHHHHHHHhcCCC-CCCCCCC
Confidence            555555555555555555555555544 5555544

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.8e-12  Score=57.01  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=37.0

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|+++++      |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKP------SGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSC------CCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC------CCCCC
Confidence            467788888889999999999999889999888888887      88763

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.5e-12  Score=57.20  Aligned_cols=44  Identities=23%  Similarity=0.431  Sum_probs=33.8

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      ++++|+++++|.|..|++.|.....|..|++.|.++++      |.|..|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP------SGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCC------CSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCC------CCCCCC
Confidence            35567777888888888888888888888888877777      777765

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.29  E-value=3.4e-12  Score=56.74  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=36.4

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKP------SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCS------SSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCC------CCCCC
Confidence            467788888888888888888888888888888888877      77764

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.29  E-value=8.5e-13  Score=58.71  Aligned_cols=44  Identities=23%  Similarity=0.399  Sum_probs=25.6

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|.++++      |.|..|++.|.....|..|+++|.+++ ||.|..|
T Consensus         3 H~~~H~~~k~------~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKP------YGCSQCAKTFSLKSQLIVHQRSHTGVK-PSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCS------EECSSSSCEESSHHHHHHHGGGSSSCC-CSCCTTC
T ss_pred             cccCCCCCCc------eECCCCCchhCCHHHHHHHHHHhCCCC-CCCCCCC
Confidence            4444555555      666666666666666666666665554 6666554

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.29  E-value=3.8e-12  Score=55.45  Aligned_cols=42  Identities=19%  Similarity=0.306  Sum_probs=33.6

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      |+++|++++||.|..|++.|.....|..|+++|.++.+      |.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESG------PSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCS------CCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCC------CCCC
Confidence            45677888888888888888888888888888888777      7663

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1e-12  Score=58.41  Aligned_cols=44  Identities=23%  Similarity=0.471  Sum_probs=24.4

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|.++++      |.|..|++.|.....|..|+++|.+++ ||.|..|
T Consensus         3 H~~~H~~~~~------~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKP------HECRECGKSFSFNSQLIVHQRIHTGEN-PSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCS------CBCTTTCCBCSSHHHHHHHHTTTTTSC-CSCCCCC
T ss_pred             CccccCCCCC------eeCCCCCchhCCHHHHHHHHHHcCCCC-CCCCCCC
Confidence            3444555544      566666666666666666655555544 5555554

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.2e-12  Score=58.24  Aligned_cols=44  Identities=27%  Similarity=0.552  Sum_probs=24.6

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|.++.+      |.|+.|++.|.....|..|+++|.+++ ||.|.+|
T Consensus         3 H~~~H~~~k~------~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKP------YVCDYCGKAFGLSAELVRHQRIHTGEK-PSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCS------EECSSSCCEESSHHHHHHHHGGGCCCS-CCSSCCC
T ss_pred             CCCCCCCCCC------eECCCCChhhCCHHHHHHHHHhcCCCC-CCCCCCC
Confidence            3444555555      566666666666555666655555544 5555554

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.8e-12  Score=57.69  Aligned_cols=44  Identities=25%  Similarity=0.536  Sum_probs=25.9

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|.++++      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus         3 h~~~h~~~k~------~~C~~C~k~F~~~~~L~~H~~~H~~~~-~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKP------YKCEDCGKGYNRRLNLDMHQRVHMGEK-TSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSS------CBCSSSCCBCSSHHHHHHHGGGGGSCC-CCCSCCC
T ss_pred             CCCCCCCCCC------eeCcccCchhCCHHHHHHHHHhcCCCC-CCCCCCC
Confidence            3444555555      666666666666666666666665555 6666554

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=9.5e-13  Score=58.55  Aligned_cols=34  Identities=24%  Similarity=0.531  Sum_probs=18.7

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |.|..|++.|.....|..|+++|.+++ ||.|..|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~-~~~C~~C   46 (46)
T 2eoe_A           13 YKCNECGKVFTQNSHLANHQRIHTGVK-PSGPSSG   46 (46)
T ss_dssp             SEETTTTEECSSHHHHHHHHGGGSCCC-SCSSCCC
T ss_pred             eECCCcChhhCCHHHHHHHHHHcCCCC-CCCCCCC
Confidence            555555555555555555555555544 5555544

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=9.1e-13  Score=58.63  Aligned_cols=44  Identities=27%  Similarity=0.551  Sum_probs=31.3

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|+++++      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus         3 H~~~H~~~~~------~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKP------FKCGECGKSYNQRVHLTQHQRVHTGEK-PSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCS------EECTTTCCEESSSHHHHTTGGGGSSCC-SSCSCCC
T ss_pred             CCCCCCCCCC------eECCCCCcccCCHHHHHHHHHHcCCCC-CCCCCCC
Confidence            4555666666      777777777777777777777777666 7777765

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=58.26  Aligned_cols=44  Identities=25%  Similarity=0.557  Sum_probs=25.1

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|+++++      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus         3 H~~~H~~~k~------~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKP------YKCNECGKAFSQTSKLARHQRIHTGEK-PSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCT------TCCTTTCCCCSSHHHHHHHHTTTTTCS-CCCSCCC
T ss_pred             CCcCCCCCcC------cCCCCCCCccCCHHHHHHHHHhcCCCC-CCCCCCC
Confidence            3444555555      666666666666666666666655554 5665554

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.1e-12  Score=58.39  Aligned_cols=44  Identities=23%  Similarity=0.428  Sum_probs=25.2

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|.++++      |.|..|++.|.....|..|+++|.+++ ||.|..|
T Consensus         3 H~~~H~~~k~------~~C~~C~k~F~~~~~L~~H~~~H~~~k-~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKH------FECTECGKAFTRKSTLSMHQKIHTGEK-PSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCC------EECSSSCCEESCHHHHHHHGGGTSCSS-CSCCCCC
T ss_pred             cccccCCCCC------eECCCCCchhCCHHHHHHHHHHhCCCC-CCCCCCC
Confidence            3444555555      666666666666666666666655554 5666554

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.5e-12  Score=56.30  Aligned_cols=44  Identities=16%  Similarity=0.289  Sum_probs=36.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKP------SGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSC------SCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCC------CCCCC
Confidence            366778888888888888888888888888888888877      77763

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=9.2e-13  Score=58.64  Aligned_cols=44  Identities=20%  Similarity=0.452  Sum_probs=24.5

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|.++.+      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus         3 H~~~H~~~~~------~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKS------HQCHECGRGFTLKSHLNQHQRIHTGEK-PSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCS------EECSSSCCEESSHHHHHHHHTTTSCSC-CSSCCCC
T ss_pred             CcCCCCCCCC------eECCcCCCccCCHHHHHHHHHHhCCCC-CCCCCCC
Confidence            3444455444      566666666666666666665555544 5555554

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.2e-12  Score=56.85  Aligned_cols=44  Identities=18%  Similarity=0.268  Sum_probs=33.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++.+      |.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP------SGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCC------SSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCC------CCCCC
Confidence            356677777888888888888888888888877777777      77753

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.9e-12  Score=57.60  Aligned_cols=43  Identities=26%  Similarity=0.448  Sum_probs=24.1

Q ss_pred             HhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         39 KKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        39 ~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      +++|.++++      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus         4 ~~~H~~~k~------~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C   46 (46)
T 2ytq_A            4 GSSGAGEKP------YGCSECGKAFSSKSYLIIHMRTHSGEK-PSGPSSG   46 (46)
T ss_dssp             SSCSSCCCS------CBCSSSCCBCSCHHHHHHHHTTTCCSC-SSCCCCC
T ss_pred             CcCcCCCCC------cCCCccChhhCChHHHHHHHHHhCCCC-CCCCCCC
Confidence            344445554      566666666666666666665555544 5555554

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=58.26  Aligned_cols=44  Identities=23%  Similarity=0.505  Sum_probs=23.8

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|.++++      |.|..|++.|.....|..|+++|.+++ ||.|..|
T Consensus         3 H~~~H~~~k~------~~C~~C~k~F~~~~~L~~H~~~H~~~k-~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKP------YKCHECGKVFRRNSHLARHQLIHTGEK-PSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCC------EECTTTCCEESSHHHHHHHHTTTCCCC-CSCCSCC
T ss_pred             CCcCCCCCCC------eECCCCCchhCCHHHHHHHHHHcCCCC-CCCCCCC
Confidence            3344444444      555555555555555555555555544 5555544

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.28  E-value=1.3e-12  Score=58.06  Aligned_cols=44  Identities=23%  Similarity=0.557  Sum_probs=25.3

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|+++++      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus         3 H~~~H~~~k~------~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKP------YNCKECGKSFRWASCLLKHQRVHSGEK-PSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCS------EECSSSCCEESSHHHHHHHGGGGTSCC-CCSTTCC
T ss_pred             CCCCCCCCcC------eECCccccccCChHHHHHHHHHhCCCC-CCCCCCC
Confidence            3444555555      666666666666666666666655554 5666554

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.7e-12  Score=57.74  Aligned_cols=34  Identities=29%  Similarity=0.595  Sum_probs=19.3

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |.|..|++.|.....|..|+++|.+++ ||.|..|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C   46 (46)
T 2epz_A           13 FDCIDCGKAFSDHIGLNQHRRIHTGEK-PSGPSSG   46 (46)
T ss_dssp             BCCTTTCCCBSSHHHHHHHHTTTTTCC-CCSSCCC
T ss_pred             eECCCCCceeCCHHHHHHHHHHhCCCC-CCCCCCC
Confidence            555555555555555555555555544 5555544

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1e-12  Score=58.45  Aligned_cols=44  Identities=25%  Similarity=0.547  Sum_probs=24.3

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|.++++      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus         3 H~~~H~~~k~------~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKP------YKCNECGKVFRHNSYLSRHQRIHTGEK-PSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSS------EECSSSCCEESSHHHHHHHHTTTCCCC-CCSCCCC
T ss_pred             cccCCCCCCC------eECCCCCchhCChHHHHHHHhhcCCCC-CCCCCCC
Confidence            3444445444      566666666666555666655555544 5555554

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=58.04  Aligned_cols=44  Identities=25%  Similarity=0.542  Sum_probs=26.5

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|+++++      |.|..|++.|.....|..|+++|.+++ ||.|..|
T Consensus         3 H~~~H~~~~~------~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKP------FKCEECGKRFTQNSQLHSHQRVHTGEK-PSGPSSG   46 (46)
T ss_dssp             STTCCCCCCS------EEETTTTEEESSHHHHHHHGGGGSCCC-CSCCCCC
T ss_pred             cccCCCCCCC------eeCCCCCcccCCHHHHHHHHHHcCCCC-CCCCCCC
Confidence            4445555555      666666666666666666666665554 6666554

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.7e-12  Score=57.71  Aligned_cols=44  Identities=20%  Similarity=0.468  Sum_probs=25.5

Q ss_pred             HHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         38 HKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        38 h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |+++|.++++      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus         3 H~~~H~~~k~------~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKP------YKCEECGKGFICRRDLYTHHMVHTGEK-PSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCS------EECSSSCCEESCHHHHHHHGGGGTTCC-CSSTTCC
T ss_pred             CCCCCCCCcC------ccCCCccchhCCHHHHHHHHHHhCCCC-CCCCCCC
Confidence            3444555555      666666666666666666666665554 6666554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.6e-12  Score=56.63  Aligned_cols=44  Identities=20%  Similarity=0.284  Sum_probs=33.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|.+++||.|+.|++.|.....|..|+++|.++++      |.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKP------SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSC------CCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCC------CCCCC
Confidence            356677777788888888888888888888777777777      77753

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=5e-12  Score=56.15  Aligned_cols=44  Identities=16%  Similarity=0.236  Sum_probs=36.4

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp------~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKP------SGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCC------SSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCC------CCCCC
Confidence            467788888888888888888888888888888888877      87764

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.4e-12  Score=55.23  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      |+++|.+++||.|..|++.|.....|..|+++|.++.+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSG   38 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSS
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            45667778888888888888888888888888877776

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.4e-12  Score=58.07  Aligned_cols=39  Identities=15%  Similarity=0.302  Sum_probs=26.3

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhC-CCCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG-VESQ  111 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~-ek~~  111 (111)
                      |+++|.+++ ||.|..|++.|...+.|..|+++|++ ++||
T Consensus         3 H~~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eoy_A            3 SGSSGQKEK-CFKCNKCEKTFSCSKYLTQHERIHTRGVKSG   42 (46)
T ss_dssp             CCCCCCCSC-CEECSSSCCEESSSHHHHHHHTTCCSCCTTS
T ss_pred             CccccCCCC-CEECcCCCCcCCCHHHHHHHHHHcCCCCCCC
Confidence            455565555 67777777777777777777777776 6665

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.7e-12  Score=56.28  Aligned_cols=44  Identities=18%  Similarity=0.278  Sum_probs=35.0

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|++++||.|..|++.|.....|..|+++|.++++      |.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKP------SGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCC------CSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCC------CCCCC
Confidence            466778888888888888888888888888888887777      77763

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=5.9e-12  Score=55.93  Aligned_cols=43  Identities=19%  Similarity=0.235  Sum_probs=35.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      .|+++|.++++|.|..|++.|.....|..|++.|.++++      |.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP------SGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCC------CSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCC------CCCC
Confidence            467778888888888888888888888888888888777      7775

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=4e-12  Score=55.96  Aligned_cols=43  Identities=14%  Similarity=0.321  Sum_probs=34.9

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      .|.++|.+++||.|..|++.|.....|..|+++|.++.+      |.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSG------PSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCC------TTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC------cCCC
Confidence            467778888888888888888888888888888888777      7763

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.8e-12  Score=56.26  Aligned_cols=44  Identities=16%  Similarity=0.230  Sum_probs=36.2

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH------SGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCB------TTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCC------CCCCC
Confidence            467778888888888888888888888888888888877      77763

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=5.2e-12  Score=56.08  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=34.7

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p------~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP------SGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCS------SCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCC------cCCCC
Confidence            366777888888888888888888888888888887777      77763

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.27  E-value=4e-12  Score=58.51  Aligned_cols=41  Identities=17%  Similarity=0.414  Sum_probs=37.5

Q ss_pred             ccccCccCcccCCchhhHhhhh-hhcCCCCccccCCCCccccc
Q psy12016         53 LFSCDVCGKHYKYKKGLGRHKR-YECGQEPKYECDQCPHRTKH   94 (111)
Q Consensus        53 ~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~C~~C~~~f~~   94 (111)
                      .|.|..|++.|.....|..|++ +|.+++ ||.|.+|++.|.+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~k-~~~C~~C~k~F~~   53 (54)
T 2eps_A           12 PYICQSCGKGFSRPDHLNGHIKQVHTSER-PHKCQVWVSGPSS   53 (54)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCCCC-CCCSSSSCCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCCCC-CccCCCCCCCCCC
Confidence            3999999999999999999997 888877 9999999999975

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.27  E-value=6.2e-12  Score=56.43  Aligned_cols=42  Identities=24%  Similarity=0.420  Sum_probs=27.2

Q ss_pred             cCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCc
Q psy12016         14 QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGK   61 (111)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~   61 (111)
                      +..+++|.|..|++.|.....|..|+++|.++++      |.|.+|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP------YSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCC------CCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCC------ccCCCCCC
Confidence            4555666666666666666666666666666666      66666653

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.3e-12  Score=56.38  Aligned_cols=44  Identities=18%  Similarity=0.295  Sum_probs=32.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|++++||.|..|++.|.....|..|+++|.++++      |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKP------SGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCC------CCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC------CCCCC
Confidence            356677777777777777777777777777777777766      76653

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.2e-12  Score=58.20  Aligned_cols=34  Identities=29%  Similarity=0.565  Sum_probs=18.8

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |.|+.|++.|.....|..|+++|.+++ ||.|..|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C   46 (46)
T 2en8_A           13 HTCDECGKNFCYISALRIHQRVHMGEK-CSGPSSG   46 (46)
T ss_dssp             EECTTTCCEESSHHHHHHHHTTTCCSC-SSCCSCC
T ss_pred             eECCCcCcccCCHHHHHHHHHHhCCCC-CCCCCCC
Confidence            555555555555555555555555544 5555544

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=3.9e-12  Score=56.58  Aligned_cols=38  Identities=16%  Similarity=0.305  Sum_probs=27.2

Q ss_pred             hhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         73 KRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        73 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         4 ~~~h~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eom_A            4 GSSGHGER-GHRCSDCGKFFLQASNFIQHRRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCS-SCCCSSSCCCCSSHHHHHHHHHHHSSCCCS
T ss_pred             CCCCCCCC-CcCCCCCCCeeCChHHHHHHHHHhCCCCCC
Confidence            34555555 777777777777777777777777777776

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.3e-12  Score=56.44  Aligned_cols=43  Identities=19%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      |+++|.+++||.|..|++.|.....|..|+++|.++++      |.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERP------SGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCS------CTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCC------CCCCC
Confidence            56677777778888888888888778888777777776      77753

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.4e-12  Score=55.79  Aligned_cols=43  Identities=16%  Similarity=0.281  Sum_probs=35.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      .|+++|++++||.|..|++.|.....|..|+.+|.++.+      |.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG------PSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSC------SCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCC------CCCC
Confidence            466778888888888888888888888888888888777      7763

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.1e-12  Score=56.11  Aligned_cols=44  Identities=20%  Similarity=0.345  Sum_probs=35.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKP------SGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSS------SCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCC------CCCCC
Confidence            366778888888888888888888888888888888777      77763

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=3.5e-12  Score=54.03  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=32.2

Q ss_pred             hhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCC
Q psy12016         74 RYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVES  110 (111)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~  110 (111)
                      ++|.+++ +|.|..|++.|...+.|..|+++|++|+|
T Consensus         2 ~~h~~~k-~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGR-SYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCC-CCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCC-CcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4566666 99999999999999999999999999987

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.9e-12  Score=56.19  Aligned_cols=42  Identities=21%  Similarity=0.320  Sum_probs=31.7

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      |+++|.++++|.|..|++.|.....|..|++.|.++++      |.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERP------SGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCC------SCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCC------CCCC
Confidence            56677777777787788888777777777777777776      7765

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.4e-12  Score=56.07  Aligned_cols=44  Identities=14%  Similarity=0.192  Sum_probs=36.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|++++||.|..|++.|.....|..|+++|.++.+      |.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~------~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL------SGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCS------SSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCC------CCCCC
Confidence            466778888888888888888888888888888888877      77763

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.2e-12  Score=56.13  Aligned_cols=43  Identities=14%  Similarity=0.180  Sum_probs=33.6

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|+++++      |.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS------SGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCS------CSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC------CCCC
Confidence            356777778888888888888888888888888877777      7775

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.9e-12  Score=55.90  Aligned_cols=44  Identities=16%  Similarity=0.190  Sum_probs=32.8

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|+++|.++++|.|..|++.|.....|..|+++|.++.+      |.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENP------SGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCC------CSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCC------CCCCC
Confidence            356677777778888888888888888888777777776      77653

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=6.7e-12  Score=55.76  Aligned_cols=44  Identities=18%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      .|.++|.++++|.|..|++.|.....|..|+++|.++++      |.|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKP------SGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCC------CSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCC------CCCCC
Confidence            356677777888888888888888888888888877777      77753

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.5e-12  Score=56.33  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=30.6

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      |+++|.+++||.|..|++.|.....|..|+++|.++++      |.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKP------SGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCC------SSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCC------CCCC
Confidence            55667777777777777777777777777777777666      6665

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=6e-12  Score=55.94  Aligned_cols=43  Identities=23%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCc
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDV   58 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~   58 (111)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++      |.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP------SGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCC------CCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC------CCCCC
Confidence            56667777777777777777777777777777777766      76653

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.25  E-value=6.5e-12  Score=54.67  Aligned_cols=38  Identities=18%  Similarity=0.367  Sum_probs=32.9

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~   39 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP   39 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCC
Confidence            56778888899999999999999999999888888877

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.25  E-value=2.4e-12  Score=57.27  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=18.3

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |.|..|++.|.....|..|+++|.+++ ||.|..|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~C   46 (46)
T 2el6_A           13 YKCSQCEKSFSGKLRLLVHQRMHTREK-PSGPSSG   46 (46)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGCCSS-CCSCCCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCC-CCCCCCC
Confidence            555555555555555555555555544 5555544

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=7.4e-12  Score=55.08  Aligned_cols=39  Identities=15%  Similarity=0.335  Sum_probs=32.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      .|+++|.+++||.|..|++.|.....|..|+.+|.++.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG   40 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCS
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCC
Confidence            366778888888888888888888888888888887777

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=6.9e-12  Score=55.67  Aligned_cols=43  Identities=19%  Similarity=0.289  Sum_probs=34.3

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKP------SGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCS------SCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC------CCCC
Confidence            366777888888888888888888888888888887777      7775

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.2e-12  Score=56.45  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=28.9

Q ss_pred             hhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016         11 SVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus        11 ~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      .++|.++++|.|..|++.|.....|..|+++|.++++      |.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKP------SGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCC------CSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC------CCCCCC
Confidence            3456666677777777777777777777776666666      666655

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=5.4e-12  Score=56.08  Aligned_cols=43  Identities=16%  Similarity=0.283  Sum_probs=34.4

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcC-CCCCCCCCccccC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCK-QKPQNLDGLFSCD   57 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~-~~~~~~~~~~~c~   57 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.+ +++      |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~------~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKS------GPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTT------SSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCC------CCCC
Confidence            466778888888888888888888888888888877 777      7775

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.24  E-value=8e-12  Score=51.70  Aligned_cols=31  Identities=29%  Similarity=0.619  Sum_probs=28.5

Q ss_pred             CccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         81 PKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +||.|.+|++.|...+.|..|+++|++|+||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            3899999999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.9e-12  Score=57.60  Aligned_cols=34  Identities=26%  Similarity=0.559  Sum_probs=19.0

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~~C~~C   46 (46)
T 2ysp_A           13 YKCEKCGKGYNSKFNLDMHQKVHTGER-PSGPSSG   46 (46)
T ss_dssp             EEETTTTEEESCHHHHHHHHTTSCSCC-SSCCSCC
T ss_pred             eECCCCCCccCCHHHHHHHHHhhCCCC-CCCCCCC
Confidence            555555555555555555555555544 5555544

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=8.1e-12  Score=54.75  Aligned_cols=36  Identities=28%  Similarity=0.469  Sum_probs=26.1

Q ss_pred             hhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         75 YECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         4 ~h~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   39 (43)
T 2yrm_A            4 GSSGNG-AFFCNECDCRFSEEASLKRHTLQTHSDKSG   39 (43)
T ss_dssp             CCSSSC-CBCCSSSCCCBSSHHHHHHHHHHHTCTTCS
T ss_pred             CcCCCC-CEECCCCCCeeCChHHHHHHHHhhCCCCCc
Confidence            344545 777777777777777777777777777776

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.2e-12  Score=55.88  Aligned_cols=39  Identities=23%  Similarity=0.280  Sum_probs=31.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      .|+++|++++||.|+.|++.|.....|..|+++|.++.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSG   40 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCS
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            466777888888888888888888888888888877776

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=6.6e-12  Score=54.68  Aligned_cols=38  Identities=16%  Similarity=0.180  Sum_probs=32.2

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      |.++|++++||.|..|++.|.....|..|+++|.++++
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP   39 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCS
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCC
Confidence            56778888888888888888888888888888888777

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=3.3e-12  Score=55.39  Aligned_cols=36  Identities=28%  Similarity=0.521  Sum_probs=28.9

Q ss_pred             hhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         75 YECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         4 ~h~~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   39 (41)
T 2ept_A            4 GSSGQR-VYECQECGKSFRQKGSLTLHERIHTGSGPS   39 (41)
T ss_dssp             SCCCCC-CEECSSSCCEESSHHHHHHHGGGCCCCSCS
T ss_pred             ccCCCC-CeECCCCCCCcCCHHHHHHHHHHhCCCCCc
Confidence            455555 888888888888888888888888888886

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=5.6e-12  Score=55.99  Aligned_cols=43  Identities=16%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKP------SGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCC------SSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCC------CCCC
Confidence            356667777777777777777777777777777777666      6665

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=5.6e-12  Score=54.89  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=28.4

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      |+++|.+++||.|+.|++.|.....|..|+.+|+++++
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP   39 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCC
Confidence            55667777777777777777777777777777777666

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.23  E-value=6.5e-12  Score=53.86  Aligned_cols=33  Identities=18%  Similarity=0.429  Sum_probs=28.5

Q ss_pred             CCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         78 GQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      +++ +|.|..|++.|...+.|..|+++|++++||
T Consensus         3 ~~k-~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   35 (39)
T 1njq_A            3 PPR-SYTCSFCKREFRSAQALGGHMNVHRRDRAR   35 (39)
T ss_dssp             CSS-SEECTTTCCEESSHHHHHHHHHTTCCSCTT
T ss_pred             CCC-ceECCCCCcccCCHHHHHHHHHHcCCCccc
Confidence            445 899999999999999999999999998887

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=6.6e-12  Score=55.20  Aligned_cols=38  Identities=16%  Similarity=0.286  Sum_probs=28.4

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      |+++|.+++||.|..|++.|.....|..|+++|.++.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG   40 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSS
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCC
Confidence            56667777777777777777777777777777777666

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=9.2e-12  Score=55.30  Aligned_cols=42  Identities=21%  Similarity=0.395  Sum_probs=30.5

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      |.++|.+++||.|..|++.|.....|..|+++|.++++      |.|.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKP------SGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCC------CCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC------CCCC
Confidence            45667777777777777777777777777777777666      6665

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.9e-12  Score=56.42  Aligned_cols=34  Identities=29%  Similarity=0.541  Sum_probs=19.1

Q ss_pred             cccCccCcccCCchhhHhhhh-hhcCCCCccccCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKR-YECGQEPKYECDQC   88 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~C~~C   88 (111)
                      |.|..|++.|.....|..|++ +|.+++ ||.|..|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~~H~~~k-~~~C~~C   47 (47)
T 2epx_A           13 YECIECGKAFIQNTSLIRHWRYYHTGEK-PSGPSSG   47 (47)
T ss_dssp             BCCSSSCCCBSSHHHHHHHHTTTTTTSC-SSSCCCC
T ss_pred             EECCccCchhCChHHHHHHhHhhcCCCC-CCCCCCC
Confidence            555555555555555555555 555544 5555544

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=4.6e-13  Score=65.81  Aligned_cols=63  Identities=19%  Similarity=0.243  Sum_probs=37.5

Q ss_pred             HHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcC
Q psy12016          7 LEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus         7 l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      |..|...+.+++|+.|..|+..|. ...|..|+ .+.+.++      +.|..|++.+. ...|..|++++.+
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~------~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGART------ELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCE------EECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCc------eEcccCCCcCc-HHHHHHHHHHccC
Confidence            445555566666666666666663 55566666 5666666      66666666554 3556666655544

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=8e-12  Score=54.42  Aligned_cols=38  Identities=16%  Similarity=0.308  Sum_probs=29.2

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      |.++|.+++||.|+.|++.|.....|..|++.|.++++
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP   39 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSS
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            55677777788888888888888888888777777766

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.6e-12  Score=56.42  Aligned_cols=37  Identities=24%  Similarity=0.488  Sum_probs=26.1

Q ss_pred             hhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         74 RYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      ++|.+++ +|.|..|++.|.....|..|+++|++++||
T Consensus         5 ~~h~~~k-~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (45)
T 2epu_A            5 SSGTGQK-PFECTHCGKSFRAKGNLVTHQRIHTGEKSG   41 (45)
T ss_dssp             CCCCSCC-SEEETTTTEEESSHHHHHHHHTTTSSCCCC
T ss_pred             CCCCCCc-CccCCCCCCccCChHHHHHHHHHhCCCCCC
Confidence            3455555 777777777777777777777777777775

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.7e-12  Score=55.45  Aligned_cols=39  Identities=23%  Similarity=0.328  Sum_probs=31.0

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      .|.++|.+++||.|..|++.|.....|..|+.+|.++.+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG   40 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCC
Confidence            466777788888888888888888888888888877776

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=6.3e-12  Score=55.86  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=16.6

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C   46 (46)
T 2ytt_A           13 YQCSECGKSFSGSYRLTQHWITHTREK-PSGPSSG   46 (46)
T ss_dssp             TCCSSSCCCCSSHHHHHHHHTHHHHCC-CCSCCCC
T ss_pred             eeCCCCCcccCCHHHHHHHHHHcCCCC-CCCCCCC
Confidence            455555555555555555555444444 4444443

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=8.9e-12  Score=55.31  Aligned_cols=43  Identities=16%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      .|+++|.+++||.|+.|++.|.....|..|++.|.++++      |.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKP------SGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCC------CCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCC------CCCC
Confidence            356677777888888888888888888888877777776      7765

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=9.1e-12  Score=55.32  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=33.7

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++      |.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKS------SGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTC------CCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCC------CCCC
Confidence            356777788888888888888888888888888887777      7775

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1e-11  Score=55.16  Aligned_cols=43  Identities=14%  Similarity=0.279  Sum_probs=34.8

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++.+      |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~------~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP------SGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCC------SSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCC------CCCC
Confidence            366778888888888888888888888888888887777      7775

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.5e-11  Score=54.07  Aligned_cols=38  Identities=13%  Similarity=0.154  Sum_probs=29.9

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      |+++|.++++|.|..|++.|.....|..|+++|.++++
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESG   40 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCC
Confidence            55677777888888888888888888888888877776

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.20  E-value=3.8e-13  Score=63.75  Aligned_cols=53  Identities=15%  Similarity=0.389  Sum_probs=44.6

Q ss_pred             HHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhH
Q psy12016         36 VRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSL   98 (111)
Q Consensus        36 ~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l   98 (111)
                      ..|+++|.++.+      |.|+.|++.|.....|.   ++|.+++ ||.|..|++.|....++
T Consensus         3 ~~h~~~H~~~k~------~~C~~C~k~F~~~~~l~---~~H~~~k-~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            3 ETDERDSTNRAS------FKCPVCSSTFTDLEANQ---LFDPMTG-TFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCSSSCCSSSE------EECSSSCCEEEHHHHHH---HEETTTT-EEBCSSSCCBCEECTTC
T ss_pred             hhHHHHcCCCCC------ccCCCCCchhccHHHhH---hhcCCCC-CEECCCCCCccccCccc
Confidence            457778888888      99999999999887775   6787777 99999999999887654

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.3e-11  Score=54.56  Aligned_cols=42  Identities=21%  Similarity=0.307  Sum_probs=33.8

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      +.++|.++++|.|..|++.|.....|..|+++|.++++      |.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKS------GPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCC------CCSC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCC------CCCC
Confidence            45667788888888888888888888888888888777      7775

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.19  E-value=1.5e-11  Score=51.26  Aligned_cols=34  Identities=24%  Similarity=0.485  Sum_probs=30.4

Q ss_pred             hcCCCCccccCCCCcccccchhHHHHHHHhhCCCC
Q psy12016         76 ECGQEPKYECDQCPHRTKHISSLKKHMALKHGVES  110 (111)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~  110 (111)
                      |.+++ +|.|..|++.|...+.|..|+++|++++|
T Consensus         2 h~~~k-~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSS-GYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCC-SEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCC-CeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            44555 99999999999999999999999999986

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.7e-11  Score=53.24  Aligned_cols=39  Identities=15%  Similarity=0.279  Sum_probs=32.8

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      .|+++|.+++||.|..|++.|.....|..|+++|.++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSG   40 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCC
Confidence            467788888888888888888888888888888888777

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.3e-11  Score=54.40  Aligned_cols=44  Identities=18%  Similarity=0.243  Sum_probs=34.2

Q ss_pred             hhhhcCCCCceecC--CCcccccchhHHHHHHhhhcCCCCCCCCCccccCcc
Q psy12016         10 LSVWQNDSGMFTCD--VCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVC   59 (111)
Q Consensus        10 ~~~~~~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c   59 (111)
                      |.++|++++||.|.  .|++.|.....|..|+++|.++++      |.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP------SGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCS------CSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCC------CCCCCC
Confidence            45667778888887  788888888888888888877777      777765

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=3.5e-11  Score=52.64  Aligned_cols=40  Identities=20%  Similarity=0.335  Sum_probs=30.6

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      ++|+++++|.|..|++.|.....|..|+++|+++++      |.|.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~------~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKS------GPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTC------SSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCC------ccCC
Confidence            456777778888888888888888888888877777      7765

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.15  E-value=2.3e-11  Score=50.75  Aligned_cols=34  Identities=15%  Similarity=0.368  Sum_probs=30.1

Q ss_pred             hcCCCCccccCCCCcccccchhHHHHHHHhhCCCC
Q psy12016         76 ECGQEPKYECDQCPHRTKHISSLKKHMALKHGVES  110 (111)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~  110 (111)
                      |.+++ +|.|..|++.|...+.|..|+++|++++|
T Consensus         2 H~~~k-~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKR-PFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCS-CEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCc-CeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            45555 99999999999999999999999999886

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.14  E-value=2.6e-11  Score=54.32  Aligned_cols=37  Identities=27%  Similarity=0.600  Sum_probs=33.0

Q ss_pred             ccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         53 LFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        53 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      .|.|.+|++.|.....|..|+++|.+++ ||.|.+|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C~k   48 (48)
T 2epr_A           12 QVACEICGKIFRDVYHLNRHKLSHSGEK-PYSSGPSSG   48 (48)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCC-CCCSCCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHhcCCCC-CccCCCCCC
Confidence            3999999999999999999999998877 999999974

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.1e-11  Score=60.89  Aligned_cols=66  Identities=21%  Similarity=0.408  Sum_probs=57.8

Q ss_pred             HHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         34 GLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        34 ~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      .|..|+.++.+.++      +.|..|+..|. ...|..|+ .+.+++ |+.|..|++.|. ...|..|+.++.+++
T Consensus         4 ~L~~H~~~~c~~r~------~~C~~C~~~~~-~~~L~~H~-~~c~~~-~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            4 GSSGHEETECPLRL------AVCQHCDLELS-ILKLKEHE-DYCGAR-TELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCSCCCCCCCCCCC------EECSSSCCEEC-HHHHHHHH-HHHHHC-EEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             HHHhhCcccCCCcc------cCCcccChHhh-HHHHHHHH-hHcCCC-ceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            46678888888888      99999999995 88899999 788877 999999999877 589999999998865

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.5e-11  Score=54.59  Aligned_cols=34  Identities=29%  Similarity=0.657  Sum_probs=19.0

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |.|..|++.|.....|..|+++|.+++ ||.|.+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C   46 (46)
T 2ep0_A           13 YKCDVCHKSFRYGSSLTVHQRIHTGEK-PSGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTSSSC-CCSCCCC
T ss_pred             eeCcccCcccCChHHHHHHHHHhCCCC-CCCCCCC
Confidence            555555555555555555555555544 5555544

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.14  E-value=2.5e-11  Score=51.32  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      |+++|.+++ ||.|..|++.|.....|..|+++|++|
T Consensus         2 H~~~h~~~k-~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIK-PFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSS-SBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCC-CccCCCCCcccCcHHHHHHHHHHhccC
Confidence            567787777 999999999999999999999998875

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=5.5e-11  Score=52.75  Aligned_cols=41  Identities=15%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             hhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccC
Q psy12016         11 SVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCD   57 (111)
Q Consensus        11 ~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~   57 (111)
                      .++|.++++|.|..|++.|.....|..|+++|.++++      |.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~------~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKP------SGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCC------SSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCC------CCCC
Confidence            4566777778888888888887778888777777777      7765

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=6e-11  Score=51.28  Aligned_cols=36  Identities=19%  Similarity=0.415  Sum_probs=28.5

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      ++|++++||.|+.|++.|.....|..|+++|.++++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP   38 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence            456777888888888888888888888888877776

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.13  E-value=1.2e-11  Score=56.89  Aligned_cols=48  Identities=21%  Similarity=0.337  Sum_probs=27.1

Q ss_pred             ccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCC
Q psy12016         27 KEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQE   80 (111)
Q Consensus        27 ~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   80 (111)
                      +.|.....|..|++.|.++.+      |.|..|++.|.....|..|+++|.+++
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~------~~C~~C~k~f~~~~~L~~H~~~H~~~k   51 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQP------ATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCC------EECTTTCCEESSHHHHHHHHHHHTTTS
T ss_pred             cccCCCcchhhHHHhcCCCCC------ccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            344444555555555555555      566666666666666666665555544

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.12  E-value=5.4e-11  Score=56.82  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=27.5

Q ss_pred             cCCCCccccCC--CCcccccchhHHHHH-HHhhCCCCC
Q psy12016         77 CGQEPKYECDQ--CPHRTKHISSLKKHM-ALKHGVESQ  111 (111)
Q Consensus        77 ~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~~~ek~~  111 (111)
                      .+++ ||.|..  |+++|...++|..|+ ++|++||||
T Consensus        23 sGEK-PYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~   59 (73)
T 1x3c_A           23 SPYR-PYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPA   59 (73)
T ss_dssp             CSSC-SCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCC
T ss_pred             cCCC-CeECCCCCcChhHcCHHHHHHHhhhhCCCCCCc
Confidence            3555 899865  999999999999997 588888887

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.12  E-value=6.1e-11  Score=50.38  Aligned_cols=34  Identities=15%  Similarity=0.225  Sum_probs=30.4

Q ss_pred             cCCCCccccC--CCCcccccchhHHHHHHHhhCCCCC
Q psy12016         77 CGQEPKYECD--QCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        77 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      .+++ +|.|.  .|++.|...+.|..|+++|++++||
T Consensus         2 ~~~k-~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDK-PFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCC-CEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCc-ceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            3555 99999  5999999999999999999999997

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.11  E-value=4.8e-11  Score=52.67  Aligned_cols=35  Identities=29%  Similarity=0.486  Sum_probs=24.1

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCP   89 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~   89 (111)
                      |.|..|++.|.....|..|+++|.+++ +|.|+.||
T Consensus        11 ~~C~~C~k~f~~~~~l~~H~~~H~~~~-~~~C~~cg   45 (45)
T 2epq_A           11 YSCPVCGLRFKRKDRMSYHVRSHDGSV-GKSGPSSG   45 (45)
T ss_dssp             SEETTTTEECSCHHHHHHHHHHHSCCC-CCCCCCCC
T ss_pred             CcCCCCCcccCCHHHHHHHHHHccCCC-CCCCcCCC
Confidence            677777777777777777777766655 67776664

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.6e-10  Score=48.74  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=29.8

Q ss_pred             hhcCCCCccccCCCCcccccc-hhHHHHHHHhhCCC
Q psy12016         75 YECGQEPKYECDQCPHRTKHI-SSLKKHMALKHGVE  109 (111)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~~~~ek  109 (111)
                      +|.+++ ||.|..|++.|... +.|..|+++|++|+
T Consensus         3 ~h~~~k-~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGR-AMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCC-CEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCC-CeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            455666 99999999999999 99999999999875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.04  E-value=3e-11  Score=61.03  Aligned_cols=59  Identities=14%  Similarity=0.137  Sum_probs=47.8

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      +.++|++++||.|..|++.|.....|..|+.+|+++.+      |.|..|.    ....+..|++.+.+
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp------~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQ------KRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHH------HHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCC------cccchhh----hHHHHHhhhccccc
Confidence            34568889999999999999999999999999998888      9998765    34455566777655

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.02  E-value=2.8e-10  Score=47.95  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=29.7

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCK   44 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (111)
                      |.++|.+++||.|+.|++.|.....|..|++.|.+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            56778888899999999999999999999888765

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=2.6e-10  Score=47.71  Aligned_cols=34  Identities=21%  Similarity=0.425  Sum_probs=29.5

Q ss_pred             hhcCCCCccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         75 YECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      +|.+++ ||.|..|++.|.....|..|+++|++|+
T Consensus         3 ~h~~~k-~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGK-PYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCC-SEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCC-CCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            355656 9999999999999999999999999875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=99.02  E-value=7.3e-12  Score=51.43  Aligned_cols=30  Identities=27%  Similarity=0.518  Sum_probs=26.0

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      ||.|..|++.|...+.|..|+++|++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            788888888888888888888888888886

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=2.5e-10  Score=47.83  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=29.3

Q ss_pred             hhcCCCCccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         75 YECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      .|.+++ ||.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k-~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGK-PFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCC-SEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCC-CccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            355655 9999999999999999999999998875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=3.7e-10  Score=47.21  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=28.8

Q ss_pred             hcCCCCccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         76 ECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      |.+++ +|.|..|++.|.....|..|+++|++|+
T Consensus         4 h~~~~-~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGK-THLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCS-SCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCC-CeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            44555 9999999999999999999999999875

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.99  E-value=2.3e-10  Score=50.99  Aligned_cols=40  Identities=15%  Similarity=0.203  Sum_probs=33.8

Q ss_pred             hHhhhhhhcCCCCccccC--CCCcccccchhHHHHHHHhhCCC
Q psy12016         69 LGRHKRYECGQEPKYECD--QCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        69 l~~h~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      +..+...|.+++ ||.|.  .|++.|...+.|..|+++|++|+
T Consensus         6 ~~~~~~~H~~~k-~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            6 SIDKYVKEMPDK-TFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCEEETTT-EEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHhccCCCC-CeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            345566688877 99996  79999999999999999999885

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=4e-10  Score=48.00  Aligned_cols=33  Identities=15%  Similarity=0.338  Sum_probs=28.0

Q ss_pred             hcCCCCccccCC--CCcccccchhHHHHHHHhhCCC
Q psy12016         76 ECGQEPKYECDQ--CPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        76 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      +.+++ ||.|.+  |++.|...+.|..|+++|+++.
T Consensus         4 ~~gek-p~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            4 GSSGI-LLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             SSCCC-CEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCC-CCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            34555 999986  9999999999999999999863

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.2e-10  Score=48.02  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=28.7

Q ss_pred             hhcCCCCccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         75 YECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      .|.+++ ||.|..|++.|...+.|..|+++|++++
T Consensus         3 ~h~~~k-~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGL-LYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCC-CEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCC-CeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            345555 9999999999999999999999998875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.9e-10  Score=51.33  Aligned_cols=34  Identities=26%  Similarity=0.534  Sum_probs=19.3

Q ss_pred             cccC--ccCcccCCchhhHhhhhhhcCCCCccccCCC
Q psy12016         54 FSCD--VCGKHYKYKKGLGRHKRYECGQEPKYECDQC   88 (111)
Q Consensus        54 ~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C   88 (111)
                      |.|.  .|++.|.....|..|+++|.+++ ||.|..|
T Consensus        13 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~k-~~~C~~C   48 (48)
T 2ent_A           13 FACTWPGCGWRFSRSDELSRHRRSHSGVK-PSGPSSG   48 (48)
T ss_dssp             EECCSSSCCCEESSHHHHHHHHTTSCCCC-SCSSCCC
T ss_pred             eECCCCCCCCccCCHHHHHHHHHHhCCCC-CCCCCCC
Confidence            5555  55555555555555555555544 5555544

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=5e-10  Score=47.13  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=28.8

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhhhcCCC
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQK   46 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (111)
                      ++|++++||.|..|++.|.....|..|+.+|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            45778888888888888888888888888887754

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=3e-10  Score=47.96  Aligned_cols=34  Identities=21%  Similarity=0.400  Sum_probs=29.1

Q ss_pred             hhhcCCCCccccCCCCcccccchhHHHH-HHHhhCC
Q psy12016         74 RYECGQEPKYECDQCPHRTKHISSLKKH-MALKHGV  108 (111)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~e  108 (111)
                      ++|.+++ ||.|..|++.|...+.|..| +++|+++
T Consensus         2 ~~H~~~k-~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGH-LYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSC-EEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCc-CeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            4566666 99999999999999999999 8888875

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.97  E-value=7.1e-10  Score=44.22  Aligned_cols=29  Identities=38%  Similarity=0.740  Sum_probs=26.5

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVES  110 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek~  110 (111)
                      +|.|..|++.|...+.|..|+++|++++|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            78999999999999999999999998875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.96  E-value=9.5e-10  Score=46.86  Aligned_cols=34  Identities=18%  Similarity=0.418  Sum_probs=26.0

Q ss_pred             cCCCCceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         14 QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      |++++||.|..|++.|.....|..|+.+|.++++
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   34 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   34 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcc
Confidence            3566778888888888888888888888877766

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.96  E-value=1.1e-09  Score=45.39  Aligned_cols=34  Identities=21%  Similarity=0.403  Sum_probs=28.2

Q ss_pred             hcCCCCceecCCCcccccchhHHHHHHhhhcCCC
Q psy12016         13 WQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQK   46 (111)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (111)
                      +|.+++||.|..|++.|.....|..|++.|+++.
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            3667888999999999999999999988887654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.95  E-value=1.3e-09  Score=45.18  Aligned_cols=33  Identities=18%  Similarity=0.403  Sum_probs=27.6

Q ss_pred             cCCCCceecCCCcccccchhHHHHHHhhhcCCC
Q psy12016         14 QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQK   46 (111)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (111)
                      |.+++||.|..|++.|.....|..|++.|.+++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            567888999999999999999999988887654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=7.2e-10  Score=46.35  Aligned_cols=33  Identities=18%  Similarity=0.419  Sum_probs=28.4

Q ss_pred             hcCCCCccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         76 ECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      +.+++ +|.|..|++.|.....|..|+++|++|+
T Consensus         4 ~~~~k-~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGK-IFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCC-CEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCC-CEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            44555 9999999999999999999999998875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.92  E-value=1.1e-09  Score=43.39  Aligned_cols=28  Identities=18%  Similarity=0.438  Sum_probs=25.3

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ||.|..|++.|...+.|..|+++|++|+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            7899999999999999999999998875

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.92  E-value=4.5e-10  Score=50.26  Aligned_cols=33  Identities=33%  Similarity=0.487  Sum_probs=21.8

Q ss_pred             hcCCCCccccCCCCcccccchhHHHHHH-HhhCCC
Q psy12016         76 ECGQEPKYECDQCPHRTKHISSLKKHMA-LKHGVE  109 (111)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~ek  109 (111)
                      |.+++ ||.|.+|++.|.....|..|++ +|++|.
T Consensus         2 Ht~~k-p~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDK-PYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTS-CEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCc-CEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            34444 7777777777777777777777 676654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.91  E-value=8.5e-10  Score=43.73  Aligned_cols=28  Identities=29%  Similarity=0.654  Sum_probs=24.9

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ||.|..|++.|...+.|..|+++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            7889999999999999999999988875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.91  E-value=1.4e-09  Score=42.93  Aligned_cols=28  Identities=18%  Similarity=0.521  Sum_probs=25.5

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ||.|..|++.|.....|..|+++|++|+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            7899999999999999999999998875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.90  E-value=1.2e-09  Score=43.20  Aligned_cols=28  Identities=21%  Similarity=0.593  Sum_probs=25.6

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ||.|..|++.|.....|..|+++|++|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            7899999999999999999999999875

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=3e-09  Score=45.23  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=27.4

Q ss_pred             cCCCCceecCC--CcccccchhHHHHHHhhhcCC
Q psy12016         14 QNDSGMFTCDV--CFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        14 ~~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +.+++||.|+.  |++.|..+..|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56788999986  999999999999999988864

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=3.2e-09  Score=50.71  Aligned_cols=33  Identities=18%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             CCCCceecCC--CcccccchhHHHHHH-hhhcCCCC
Q psy12016         15 NDSGMFTCDV--CFKEYKYKRGLVRHK-KNSCKQKP   47 (111)
Q Consensus        15 ~~~~~~~C~~--C~~~f~~~~~l~~h~-~~~~~~~~   47 (111)
                      ++++||.|..  |++.|....+|..|+ ++|+++++
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP   58 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP   58 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC
Confidence            4566777754  777777777777775 46776666

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=2.9e-09  Score=44.69  Aligned_cols=34  Identities=15%  Similarity=0.110  Sum_probs=28.4

Q ss_pred             hhcCCCCceecCCCcccccch-hHHHHHHhhhcCC
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYK-RGLVRHKKNSCKQ   45 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~-~~l~~h~~~~~~~   45 (111)
                      ++|.+++||.|+.|++.|... ..|..|+.+|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            357788889999999999998 8999998888764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=2.4e-09  Score=45.09  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=29.5

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHH-HhhhcCC
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRH-KKNSCKQ   45 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h-~~~~~~~   45 (111)
                      ++|.+++||.|..|++.|..+..|..| +..|++.
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            467888999999999999999999999 8888753

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=4.3e-09  Score=43.82  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=28.3

Q ss_pred             hcCCCCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         13 WQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      .|.+++||.|..|++.|.....|..|+++|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            567888999999999999999999998888764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.85  E-value=2.5e-09  Score=45.00  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             hcCCCCccccCC--CCcccccchhHHHHHHHhhCCC
Q psy12016         76 ECGQEPKYECDQ--CPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        76 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      +.+++ ||.|.+  |++.|...+.|..|+++|++|+
T Consensus         3 ~~~~k-~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKK-QHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCC-CEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCC-CCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            34555 999984  9999999999999999999875

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.84  E-value=2e-09  Score=42.84  Aligned_cols=28  Identities=21%  Similarity=0.453  Sum_probs=25.1

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ||.|..|++.|.....|..|+++|++++
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            8899999999999999999999988875

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=3.3e-09  Score=44.24  Aligned_cols=33  Identities=15%  Similarity=0.337  Sum_probs=27.3

Q ss_pred             hcCCCCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         13 WQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      .|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            466788899999999999999899998887654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=4e-09  Score=43.98  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=27.9

Q ss_pred             hcCCCCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         13 WQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      .|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            567888999999999999999999998888754

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.83  E-value=4.1e-10  Score=56.81  Aligned_cols=58  Identities=12%  Similarity=0.233  Sum_probs=40.8

Q ss_pred             HhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhC
Q psy12016         39 KKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        39 ~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      ..+|+++++      |.|..|++.|.....|..|+++|.+++ ||.|..|.+.    ..|..|++++.+
T Consensus        17 ~~~H~~~kp------y~C~~C~k~F~~~~~L~~H~~~Ht~ek-p~~C~~~~~~----~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNST------YQCKHCDSKLQSTAELTSHLNIHNEEF-QKRAKRQERR----KQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSC------EECSSSCCEESSHHHHHHHHHHHHHHH-HHHCCCCSCC----CCCCCCCCCCCC
T ss_pred             ccccCCCCC------CcCCCCCCEeCCHHHHHHHHHHhCCCC-CcccchhhhH----HHHHhhhccccc
Confidence            345666666      888888888888888888888888776 8888776533    333444455544

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.81  E-value=2.2e-09  Score=43.25  Aligned_cols=28  Identities=21%  Similarity=0.501  Sum_probs=24.3

Q ss_pred             ccccC--CCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECD--QCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ||.|.  .|++.|...+.|..|+++|++|+
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            78887  89999999999999999888875

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.30  E-value=5.1e-10  Score=44.48  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=24.7

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ||.|..|++.|...+.|..|+++|++|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            7889999999999999999999888875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.79  E-value=6.5e-09  Score=42.58  Aligned_cols=29  Identities=21%  Similarity=0.288  Sum_probs=20.7

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      ||.|..|++.|.....|..|+.+|+++.+
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~   30 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGE   30 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            56777777777777777777777776655

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=7.7e-09  Score=43.00  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=26.7

Q ss_pred             hcCCCCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         13 WQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      .|..+++|.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            456778888888888888888888888887764

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=1.1e-08  Score=42.57  Aligned_cols=33  Identities=27%  Similarity=0.569  Sum_probs=27.1

Q ss_pred             hcCCCCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         13 WQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      .+..++||.|+.|++.|.....|..|+++|.++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            356778889999999998888888888888764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.76  E-value=6.8e-09  Score=42.04  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=24.6

Q ss_pred             ccccC--CCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECD--QCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ||.|.  .|++.|...+.|..|+++|++++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            88898  89999999999999999988874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.76  E-value=6.5e-09  Score=46.36  Aligned_cols=35  Identities=26%  Similarity=0.528  Sum_probs=27.5

Q ss_pred             hcCCCCceecCCCcccccchhHHHHHHh-hhcCCCC
Q psy12016         13 WQNDSGMFTCDVCFKEYKYKRGLVRHKK-NSCKQKP   47 (111)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~-~~~~~~~   47 (111)
                      +|++++||.|..|++.|.....|..|++ +|.++..
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            3678889999999999999999999988 8877654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=9.8e-09  Score=48.92  Aligned_cols=25  Identities=24%  Similarity=0.553  Sum_probs=13.5

Q ss_pred             cccCccCcccCCchhhHhhhhhhcC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      |.|..|++.|.....|..|+++|++
T Consensus        14 y~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A           14 LPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             cCCCCCCCccCCHHHHHhhhhhhCC
Confidence            5555555555555555555555544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.73  E-value=4e-09  Score=40.98  Aligned_cols=27  Identities=22%  Similarity=0.522  Sum_probs=19.6

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      ||.|..|++.|.....|..|+++|++|
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            467888888888888888887777664

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.72  E-value=4.4e-09  Score=41.90  Aligned_cols=28  Identities=21%  Similarity=0.435  Sum_probs=22.8

Q ss_pred             ccccCCCCcccccchhHHHH-HHHhhCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKH-MALKHGVE  109 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H-~~~~~~ek  109 (111)
                      ||.|..|++.|...+.|..| +++|++|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            78888888888888888888 67777764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.19  E-value=1.3e-09  Score=43.44  Aligned_cols=28  Identities=21%  Similarity=0.578  Sum_probs=24.5

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ||.|..|++.|...+.|..|+++|++++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            7889999999999999999999888764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.71  E-value=2e-08  Score=42.28  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=27.2

Q ss_pred             cCCCCceecC--CCcccccchhHHHHHHhhhcCCCC
Q psy12016         14 QNDSGMFTCD--VCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        14 ~~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      |++++||.|.  .|++.|.....|..|+++|+++++
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            4567788888  588888888888888888887665

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.66  E-value=4.9e-08  Score=46.48  Aligned_cols=35  Identities=17%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhhhcCCC
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQK   46 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (111)
                      ..+..++||.|..|++.|.....|..|+++|++..
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            34678899999999999999999999999999864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.65  E-value=1.3e-08  Score=42.68  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=22.4

Q ss_pred             cCCCCceecCCCcccccchhHHHHHH
Q psy12016         14 QNDSGMFTCDVCFKEYKYKRGLVRHK   39 (111)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~   39 (111)
                      +.+++||.|+.|++.|..+..|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            45788899999999999999999887

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.64  E-value=4.1e-08  Score=41.10  Aligned_cols=32  Identities=19%  Similarity=0.293  Sum_probs=26.7

Q ss_pred             cCCCCceecCC--CcccccchhHHHHHHhhhcCC
Q psy12016         14 QNDSGMFTCDV--CFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        14 ~~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +++++||.|..  |++.|.....|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56788899984  999999999999998888764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.64  E-value=1.9e-08  Score=39.01  Aligned_cols=25  Identities=28%  Similarity=0.816  Sum_probs=21.7

Q ss_pred             ccccCCCCcccccchhHHHHHHHhh
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      ||.|..|++.|...+.|..|+++|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CccCCCcChhhCCHHHHHHHHHHcc
Confidence            8889999999999999999988764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.63  E-value=1.4e-08  Score=39.77  Aligned_cols=26  Identities=23%  Similarity=0.577  Sum_probs=21.4

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      ||.|..|++.|...+.|..|+++|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHhcCC
Confidence            78888888888888888888877754

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.62  E-value=4.3e-08  Score=38.73  Aligned_cols=29  Identities=17%  Similarity=0.391  Sum_probs=21.8

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      ++||.|..|++.|.....|..|++.|.++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            35778888888888888888887777653

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.62  E-value=1.4e-08  Score=44.98  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=26.4

Q ss_pred             hhhcCCCCceecC--CCcccccchhHHHHHHhhhcCC
Q psy12016         11 SVWQNDSGMFTCD--VCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        11 ~~~~~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      ...|.+++||.|.  .|++.|.....|..|+++|+++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            3557778888885  6888888888888888877664

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.60  E-value=5e-08  Score=38.31  Aligned_cols=28  Identities=21%  Similarity=0.268  Sum_probs=20.4

Q ss_pred             CceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +||.|+.|++.|.....|..|+.+|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            3677777777777777777777777653

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.59  E-value=4.8e-08  Score=37.82  Aligned_cols=26  Identities=15%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             CCceecCCCcccccchhHHHHHHhhh
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      ++||.|..|++.|.....|..|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            35788888888888888888887765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.59  E-value=4.3e-08  Score=38.24  Aligned_cols=27  Identities=22%  Similarity=0.488  Sum_probs=20.8

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhc
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   43 (111)
                      ++||.|..|++.|.....|..|++.|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            357888888888888888888877664

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.58  E-value=1.5e-08  Score=39.44  Aligned_cols=25  Identities=24%  Similarity=0.534  Sum_probs=20.8

Q ss_pred             ccccCCCCcccccchhHHHHHHHhh
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      ||.|..|++.|...+.|..|+++|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHhcC
Confidence            7888888888888888888887663

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.57  E-value=7e-08  Score=37.78  Aligned_cols=28  Identities=25%  Similarity=0.488  Sum_probs=21.3

Q ss_pred             CceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +||.|..|++.|.....|..|+++|.++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            3677888888888888888887777654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.56  E-value=7.7e-08  Score=37.69  Aligned_cols=27  Identities=26%  Similarity=0.678  Sum_probs=19.7

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      ||.|..|++.|.....|..|+..|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            577777777777777777777776653

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.56  E-value=3.6e-08  Score=38.30  Aligned_cols=26  Identities=12%  Similarity=0.344  Sum_probs=20.4

Q ss_pred             CCceecCCCcccccchhHHHHHHhhh
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      ++||.|..|++.|.....|..|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            35788888888888888888887665

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.95  E-value=9.1e-09  Score=39.63  Aligned_cols=25  Identities=28%  Similarity=0.607  Sum_probs=20.5

Q ss_pred             ccccCCCCcccccchhHHHHHHHhh
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      ||.|..|++.|...+.|..|+++|+
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            7888888888888888888887763

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.52  E-value=1.1e-07  Score=38.21  Aligned_cols=28  Identities=32%  Similarity=0.650  Sum_probs=19.3

Q ss_pred             CceecC--CCcccccchhHHHHHHhhhcCC
Q psy12016         18 GMFTCD--VCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        18 ~~~~C~--~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +||.|.  .|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            467776  6777777777777777766653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.50  E-value=9.3e-08  Score=37.38  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=17.7

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      ||.|..|++.|.....|..|+.+|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            566667777777666676666666543

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.50  E-value=6.9e-09  Score=42.18  Aligned_cols=29  Identities=24%  Similarity=0.459  Sum_probs=16.5

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcCCCC
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      ||.|..|++.|.....|..|+++|+++++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            45566666666666556656555555443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.50  E-value=1.3e-07  Score=37.28  Aligned_cols=27  Identities=19%  Similarity=0.320  Sum_probs=16.7

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      ||.|..|++.|.....|..|+.+|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            456666666666666666666665543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.48  E-value=1.1e-07  Score=36.59  Aligned_cols=26  Identities=23%  Similarity=0.571  Sum_probs=16.8

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcC
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCK   44 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (111)
                      ||.|..|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            45677777777777777777666553

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.47  E-value=1.4e-07  Score=37.67  Aligned_cols=27  Identities=30%  Similarity=0.571  Sum_probs=18.5

Q ss_pred             ceecC--CCcccccchhHHHHHHhhhcCC
Q psy12016         19 MFTCD--VCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        19 ~~~C~--~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      ||.|+  .|++.|.....|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            56676  6777777777777777666553

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.46  E-value=9e-08  Score=40.04  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             CCCCccccCCCCcccccchhHHHHHH
Q psy12016         78 GQEPKYECDQCPHRTKHISSLKKHMA  103 (111)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (111)
                      +++ ||.|.+|++.|...++|..|+.
T Consensus         5 gek-p~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            5 KPA-RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SCC-CCEETTTTEECSCHHHHHHHHH
T ss_pred             Ccc-CeECCCCCCccCCHhHccCcCC
Confidence            444 8888888888888888888873

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.44  E-value=9.3e-08  Score=37.45  Aligned_cols=26  Identities=23%  Similarity=0.577  Sum_probs=21.9

Q ss_pred             ccccC--CCCcccccchhHHHHHHHhhC
Q psy12016         82 KYECD--QCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      +|.|.  .|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            78888  899888888888888888764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.75  E-value=3.7e-08  Score=38.77  Aligned_cols=26  Identities=19%  Similarity=0.414  Sum_probs=17.1

Q ss_pred             ceecCCCcccccchhHHHHHHhhhcC
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSCK   44 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (111)
                      ||.|..|++.|.....|..|+++|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            56666677777666666666666554

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.75  E-value=3.8e-08  Score=38.97  Aligned_cols=27  Identities=19%  Similarity=0.384  Sum_probs=17.9

Q ss_pred             CceecCCCcccccchhHHHHHHhhhcC
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSCK   44 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (111)
                      +||.|..|++.|.....|..|+.+|.+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            456677777777777667666666554

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.36  E-value=2.5e-07  Score=36.49  Aligned_cols=26  Identities=23%  Similarity=0.634  Sum_probs=16.0

Q ss_pred             ceecCCCcccccchhHHHHH-HhhhcC
Q psy12016         19 MFTCDVCFKEYKYKRGLVRH-KKNSCK   44 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h-~~~~~~   44 (111)
                      ||.|..|++.|.....|..| +..|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            56666666666666666666 455544

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.68  E-value=6.1e-08  Score=37.15  Aligned_cols=24  Identities=21%  Similarity=0.520  Sum_probs=16.7

Q ss_pred             ceecCCCcccccchhHHHHHHhhh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      ||.|+.|++.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            567777777777777777776654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.28  E-value=7.3e-07  Score=34.70  Aligned_cols=26  Identities=31%  Similarity=0.602  Sum_probs=20.2

Q ss_pred             CceecC--CCcccccchhHHHHHHhhhc
Q psy12016         18 GMFTCD--VCFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        18 ~~~~C~--~C~~~f~~~~~l~~h~~~~~   43 (111)
                      +||.|.  .|++.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            367788  88888888888888877765

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.00013  Score=34.30  Aligned_cols=24  Identities=17%  Similarity=0.492  Sum_probs=14.4

Q ss_pred             ccccC--CCCcccccchhHHHHHHHh
Q psy12016         82 KYECD--QCPHRTKHISSLKKHMALK  105 (111)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~~  105 (111)
                      +|.|.  .|++.+.....|..|++..
T Consensus        38 ~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A           38 PLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCEeeCCCCcCCCCChHHHHhhcccc
Confidence            45664  4666666666666666554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.00013  Score=34.30  Aligned_cols=54  Identities=17%  Similarity=0.164  Sum_probs=41.9

Q ss_pred             CCCcccccchhHHHHHH-hhhcCCCCCCCCCccccC--ccCcccCCchhhHhhhhhh
Q psy12016         23 DVCFKEYKYKRGLVRHK-KNSCKQKPQNLDGLFSCD--VCGKHYKYKKGLGRHKRYE   76 (111)
Q Consensus        23 ~~C~~~f~~~~~l~~h~-~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~   76 (111)
                      ..|++.|.....|..|+ ..|.+.........|.|.  .|+..+.....|..|+++.
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            44999999999999998 478766532222348997  5999888888999998865

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.38  E-value=4.4e-05  Score=40.52  Aligned_cols=28  Identities=18%  Similarity=0.392  Sum_probs=21.8

Q ss_pred             cCCCCceecCCCcccccchhHHHHHHhh
Q psy12016         14 QNDSGMFTCDVCFKEYKYKRGLVRHKKN   41 (111)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~   41 (111)
                      ++++++|.|..|++.|.....|..|+++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            3566788888888888888888888754

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.25  E-value=4.4e-05  Score=40.53  Aligned_cols=30  Identities=20%  Similarity=0.203  Sum_probs=23.0

Q ss_pred             hhhcCCCCccccCCCCcccccchhHHHHHHH
Q psy12016         74 RYECGQEPKYECDQCPHRTKHISSLKKHMAL  104 (111)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (111)
                      ..++|+. +|.|..|++.|.+.+.|..|+++
T Consensus        43 ed~tGek-pfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGG-LHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGG-CSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCc-ceEcccCcchhCCHHHHHHHHhh
Confidence            3455655 88899999999888888888653

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.88  E-value=0.0012  Score=28.69  Aligned_cols=25  Identities=24%  Similarity=0.587  Sum_probs=13.8

Q ss_pred             cccCccCcccCCchhhHhhhhhhcC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      +.|+.|+..|.....|..|+.--.+
T Consensus        13 ~~CPrCn~~f~~~~sLr~HmkycCp   37 (49)
T 2e72_A           13 KICPRCNAQFRVTEALRGHMCYCCP   37 (49)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHCT
T ss_pred             eeCCcccccccchHHHHhhhhhcCc
Confidence            5555565555555555555554333

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.78  E-value=0.002  Score=28.04  Aligned_cols=29  Identities=21%  Similarity=0.460  Sum_probs=25.0

Q ss_pred             CceecCCCcccccchhHHHHHHhhhcCCC
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSCKQK   46 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (111)
                      .++.|+.|+..|.....|..||+.-.+..
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcch
Confidence            67899999999999999999998655543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.76  E-value=0.00034  Score=37.40  Aligned_cols=76  Identities=13%  Similarity=0.176  Sum_probs=46.3

Q ss_pred             CCceecCCCcccccchhHHHHHH--hhhcCC-CCCCCCCccccC------ccCcccCCchhhHhhhhhhcCCCCccccCC
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHK--KNSCKQ-KPQNLDGLFSCD------VCGKHYKYKKGLGRHKRYECGQEPKYECDQ   87 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~--~~~~~~-~~~~~~~~~~c~------~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   87 (111)
                      ..++.|..|+..|.+...+..|.  +.|... +.      +.+.      .-+..+...    .+.....+.. .+.|..
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRR------YMAINQGEDSVPAKKFKAA----PAEISDGEDR-SKCCPV   98 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHH------HHHHTTCCCCCSCCCCSCC----SSCCSSCCCT-TTEETT
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHH------HhcccCcccCCCCCccCCC----ccccccCCCC-CeEcCC
Confidence            35688999999999999999998  333211 00      1110      001111111    0112233344 789999


Q ss_pred             CCcccccchhHHHHHH
Q psy12016         88 CPHRTKHISSLKKHMA  103 (111)
Q Consensus        88 C~~~f~~~~~l~~H~~  103 (111)
                      |+..|.+...+..|..
T Consensus        99 C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTEECSSHHHHHHHHT
T ss_pred             CCCEeCCHHHHHHHHC
Confidence            9999999999888863

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.63  E-value=0.0049  Score=34.39  Aligned_cols=55  Identities=16%  Similarity=0.337  Sum_probs=40.1

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      ..|+.|+..+ ....+..|.......+ +..|..|+..+.. ..+..|..++.|+-+|
T Consensus       111 v~C~~C~~~~-~r~~l~~H~~~~C~~r-~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          111 MDCPQCQRPF-QKFHINIHILKDCPRR-QVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             EECTTTCCEE-EGGGHHHHHHHTCTTC-EEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             eECCCCChHH-HHHHHHHHhhhhCCCC-CeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            6888898776 4567888887666666 8889999987744 5788999988887654

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=94.45  E-value=0.082  Score=21.56  Aligned_cols=27  Identities=19%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             CCCceecCCCcccccchhHHHHHHhhh
Q psy12016         16 DSGMFTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      ...++.|..|+-.|.....+..|.+.-
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             ccCcCeeccccceehhhHHHhhhheec
Confidence            455678999999999888888887643

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.14  E-value=0.053  Score=30.16  Aligned_cols=66  Identities=18%  Similarity=0.328  Sum_probs=45.8

Q ss_pred             HHHhhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhhcCCC
Q psy12016          6 FLEYLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYECGQE   80 (111)
Q Consensus         6 ~l~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   80 (111)
                      .+..|...- .-.+..|+.|+..+ .+..+..|.......+.      ..|..|+..+.. ..+..|..+..|+.
T Consensus        98 ~l~~H~~~C-~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~------~~C~~C~~~~~~-~~l~~H~~~~~~~~  163 (170)
T 3hcs_A           98 HLEDHQAHC-EFALMDCPQCQRPF-QKFHINIHILKDCPRRQ------VSCDNCAASMAF-EDKEIHDQNCPLAL  163 (170)
T ss_dssp             GHHHHHTTC-TTSEEECTTTCCEE-EGGGHHHHHHHTCTTCE------EECTTTCCEEEG-GGHHHHHTTCCC--
T ss_pred             HHHHHHhcC-CceeeECCCCChHH-HHHHHHHHhhhhCCCCC------eECCCCCCccCH-HHHHhHHHhCcChh
Confidence            345554322 23467899999887 55668999877777776      789999887654 56788888776654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.99  E-value=0.063  Score=21.70  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=16.7

Q ss_pred             ccccCCCCcccccchhHHHHHHHhh
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      .|.|+.|-+.|.+...|..|-...|
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcc
Confidence            4667777777777777777755444

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=93.63  E-value=0.033  Score=27.61  Aligned_cols=25  Identities=28%  Similarity=0.571  Sum_probs=14.8

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ...|-+||+.|..   |++|+.++||..
T Consensus        21 ~iiClecGK~fK~---LkRHL~~~hglt   45 (87)
T 2jsp_A           21 HIVCLECGGSFKS---LKRHLTTHHSMT   45 (87)
T ss_dssp             CEECTBTCCEESB---HHHHHHHTTCSC
T ss_pred             ceEecccchhhHH---HHHHHHHccCCC
Confidence            3456666666653   566666665543

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=92.35  E-value=0.11  Score=25.25  Aligned_cols=49  Identities=29%  Similarity=0.484  Sum_probs=32.9

Q ss_pred             CceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhh
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKR   74 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~   74 (111)
                      ..|.|..|+..+. +..+..|...-.+...      +.|..|+..|.. .....|..
T Consensus         9 V~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~------~SCIDC~~~F~~-~~y~~Hts   57 (79)
T 1wjv_A            9 VFFTCNACGESVK-KIQVEKHVSNCRNCEC------LSCIDCGKDFWG-DDYKSHVK   57 (79)
T ss_dssp             CEEEESSSCCEEE-TTHHHHHHHHCTTCCE------EEETTTTEEEEG-GGTTTCCC
T ss_pred             eEEEcCCCCCeee-cccchhHHhhCCCCCc------EEecccCCeeCC-CCEeCEee
Confidence            4588999996654 4568888543233334      899999999885 34455543

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.79  E-value=0.065  Score=25.91  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=19.9

Q ss_pred             ccccCCCCcccc-------cchhHHHHHHHhhCC
Q psy12016         82 KYECDQCPHRTK-------HISSLKKHMALKHGV  108 (111)
Q Consensus        82 ~~~C~~C~~~f~-------~~~~l~~H~~~~~~e  108 (111)
                      ...|..|++.+.       .-+.|.+|++..|.+
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~   61 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE   61 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHH
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHCHH
Confidence            467888887776       246889999888754

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=90.98  E-value=0.19  Score=21.79  Aligned_cols=11  Identities=45%  Similarity=1.389  Sum_probs=7.1

Q ss_pred             cccCccCcccC
Q psy12016         54 FSCDVCGKHYK   64 (111)
Q Consensus        54 ~~c~~c~~~~~   64 (111)
                      |.|..||..+.
T Consensus         5 y~C~vCGyvyd   15 (46)
T 6rxn_A            5 YVCNVCGYEYD   15 (46)
T ss_dssp             EEETTTCCEEC
T ss_pred             EECCCCCeEEe
Confidence            66667766655

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=90.72  E-value=0.15  Score=27.12  Aligned_cols=21  Identities=19%  Similarity=0.290  Sum_probs=12.3

Q ss_pred             cccCccCcccCCchhhHhhhh
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKR   74 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~   74 (111)
                      +-|..|+..|.+...+..|..
T Consensus        94 ~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           94 KCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TEETTTTEECSSHHHHHHHHT
T ss_pred             eEcCCCCCEeCCHHHHHHHHC
Confidence            556666666666655555544

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=90.45  E-value=0.15  Score=22.82  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=16.8

Q ss_pred             eecCCCcccccchhHHHHHHh
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKK   40 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~   40 (111)
                      -.|..|+..|..+..++.|+-
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            578888888888888888764

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=90.33  E-value=0.22  Score=28.80  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=22.1

Q ss_pred             ccccCCCCccccc-chhHHHHHHHhh
Q psy12016         82 KYECDQCPHRTKH-ISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~~C~~~f~~-~~~l~~H~~~~~  106 (111)
                      |..|..|+..|.+ ...|+.|+..+-
T Consensus       169 ~L~C~~C~~~f~n~~~~LK~HL~~e~  194 (204)
T 3sp4_A          169 DLKCWRCGETFGRHFTKLKAHLQEEY  194 (204)
T ss_dssp             CCBCTTTCCBCTTCHHHHHHHHHHHH
T ss_pred             CceeCCCCchhhcccHHHHHHHHHHH
Confidence            8899999999987 889999988664

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=89.74  E-value=0.42  Score=19.89  Aligned_cols=26  Identities=12%  Similarity=0.181  Sum_probs=15.7

Q ss_pred             CCCceecCCCcccccchhHHHHHHhhh
Q psy12016         16 DSGMFTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      ....+.|+.|+..+... ....|.-.|
T Consensus         6 ~~~~~~C~~C~~~i~~~-~~~EH~D~H   31 (39)
T 2i5o_A            6 AEDQVPCEKCGSLVPVW-DMPEHMDYH   31 (39)
T ss_dssp             CCCEEECTTTCCEEEGG-GHHHHHHHH
T ss_pred             cCCCcccccccCcCCcc-cccchhhHH
Confidence            34457788888777663 345565443

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=89.15  E-value=0.37  Score=18.99  Aligned_cols=23  Identities=26%  Similarity=0.587  Sum_probs=17.2

Q ss_pred             ccCCCCcccccchhHHHHHHHhh
Q psy12016         84 ECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      -|..|.+.+..-.+|..|.+..|
T Consensus        11 hcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            47778888888888888876554

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=88.97  E-value=0.25  Score=25.39  Aligned_cols=10  Identities=30%  Similarity=0.843  Sum_probs=7.4

Q ss_pred             cccCccCccc
Q psy12016         54 FSCDVCGKHY   63 (111)
Q Consensus        54 ~~c~~c~~~~   63 (111)
                      +.|..||..|
T Consensus        68 ~~C~~CG~~F   77 (105)
T 2gmg_A           68 AQCRKCGFVF   77 (105)
T ss_dssp             CBBTTTCCBC
T ss_pred             cChhhCcCee
Confidence            6777777776

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=88.92  E-value=0.44  Score=18.28  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=17.0

Q ss_pred             ceecCCCcccccchhHHHHHHh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKK   40 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~   40 (111)
                      -+.|+.|.........+..|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            3678888888888888887743

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=88.58  E-value=0.17  Score=29.17  Aligned_cols=24  Identities=29%  Similarity=0.721  Sum_probs=18.1

Q ss_pred             ccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         53 LFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        53 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      .|.|..||..+.             +.. |+.|+.|+.
T Consensus       171 ~~~C~~CG~i~~-------------g~~-p~~CP~C~~  194 (202)
T 1yuz_A          171 FHLCPICGYIHK-------------GED-FEKCPICFR  194 (202)
T ss_dssp             EEECSSSCCEEE-------------SSC-CSBCTTTCC
T ss_pred             EEEECCCCCEEc-------------CcC-CCCCCCCCC
Confidence            489999998754             124 789999984

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=88.10  E-value=0.13  Score=24.44  Aligned_cols=10  Identities=30%  Similarity=1.238  Sum_probs=4.5

Q ss_pred             cccCccCccc
Q psy12016         54 FSCDVCGKHY   63 (111)
Q Consensus        54 ~~c~~c~~~~   63 (111)
                      ..|..|+..+
T Consensus        45 v~C~~C~~~~   54 (76)
T 2yuc_A           45 LKCEFCGCDF   54 (76)
T ss_dssp             CCCSSSCCCC
T ss_pred             eECCCCCCcc
Confidence            4444444443

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=86.34  E-value=0.3  Score=27.35  Aligned_cols=25  Identities=20%  Similarity=0.586  Sum_probs=18.3

Q ss_pred             CccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         52 GLFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        52 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      ..|.|+.||..+.             ++. |-.|+.|+.
T Consensus       137 ~~~~C~~CG~i~~-------------~~~-p~~CP~Cg~  161 (170)
T 3pwf_A          137 KVYICPICGYTAV-------------DEA-PEYCPVCGA  161 (170)
T ss_dssp             CEEECTTTCCEEE-------------SCC-CSBCTTTCC
T ss_pred             CeeEeCCCCCeeC-------------CCC-CCCCCCCCC
Confidence            4589999998754             234 678999984

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=85.64  E-value=0.75  Score=24.30  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=16.6

Q ss_pred             cccCccCcccCCchhhHhhhhhhcC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      ..|..|...|.....+..|++..++
T Consensus        16 ~~CLFCd~~~~s~~~~l~H~k~~H~   40 (121)
T 1wir_A           16 TPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             eeEecCCCcccCHHHHHHHHHHhcC
Confidence            5666777776666666666666544

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=84.05  E-value=0.89  Score=21.55  Aligned_cols=13  Identities=15%  Similarity=0.652  Sum_probs=7.9

Q ss_pred             cccCccCcccCCc
Q psy12016         54 FSCDVCGKHYKYK   66 (111)
Q Consensus        54 ~~c~~c~~~~~~~   66 (111)
                      |.|..||..|...
T Consensus        29 Y~C~~CG~~~e~~   41 (70)
T 1twf_L           29 YICAECSSKLSLS   41 (70)
T ss_dssp             EECSSSCCEECCC
T ss_pred             EECCCCCCcceeC
Confidence            6666666665543

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=83.60  E-value=0.87  Score=26.35  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=11.1

Q ss_pred             cccCccCcccCC-chhhHhhhhh
Q psy12016         54 FSCDVCGKHYKY-KKGLGRHKRY   75 (111)
Q Consensus        54 ~~c~~c~~~~~~-~~~l~~h~~~   75 (111)
                      ..|..|+..|.+ ...|..|+..
T Consensus       170 L~C~~C~~~f~n~~~~LK~HL~~  192 (204)
T 3sp4_A          170 LKCWRCGETFGRHFTKLKAHLQE  192 (204)
T ss_dssp             CBCTTTCCBCTTCHHHHHHHHHH
T ss_pred             ceeCCCCchhhcccHHHHHHHHH
Confidence            455555555544 4455555443

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=83.14  E-value=0.28  Score=24.13  Aligned_cols=31  Identities=19%  Similarity=0.500  Sum_probs=19.8

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHI   95 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~   95 (111)
                      |.|+.||......          .+.. .+.|+.|+..|.-.
T Consensus        28 y~Cp~CG~~~v~r----------~atG-iW~C~~Cg~~~agg   58 (83)
T 1vq8_Z           28 HACPNCGEDRVDR----------QGTG-IWQCSYCDYKFTGG   58 (83)
T ss_dssp             EECSSSCCEEEEE----------EETT-EEEETTTCCEEECC
T ss_pred             CcCCCCCCcceec----------cCCC-eEECCCCCCEecCC
Confidence            8999998642111          1112 78899999887543

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=82.30  E-value=0.23  Score=28.35  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=18.1

Q ss_pred             ccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcc
Q psy12016         53 LFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHR   91 (111)
Q Consensus        53 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~   91 (111)
                      .|.|..||..+.-.            +. |-.|+.|+..
T Consensus       155 ~~~C~~CG~~~~g~------------~~-p~~CP~C~~~  180 (191)
T 1lko_A          155 KWRCRNCGYVHEGT------------GA-PELCPACAHP  180 (191)
T ss_dssp             EEEETTTCCEEEEE------------EC-CSBCTTTCCB
T ss_pred             eEEECCCCCEeeCC------------CC-CCCCCCCcCC
Confidence            48999999875511            23 6689999853

>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6

Probab=81.99  E-value=0.44  Score=22.79  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=18.2

Q ss_pred             ccccCCCCccccc---chhHHHHHHHhhC
Q psy12016         82 KYECDQCPHRTKH---ISSLKKHMALKHG  107 (111)
Q Consensus        82 ~~~C~~C~~~f~~---~~~l~~H~~~~~~  107 (111)
                      ...|..|.+.+..   -++|.+|++.+|.
T Consensus        29 ~a~Ck~C~~~l~~~g~TSnL~rHL~~~H~   57 (73)
T 2ct5_A           29 KIYCRICMAQIAYSGNTSNLSYHLEKNHP   57 (73)
T ss_dssp             CCEETTTTEECCCCSSTHHHHHHHHHSCH
T ss_pred             EEECCCCCccccCCCChHhHHHHHHHHCH
Confidence            4568888876543   3588888887775

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=81.21  E-value=0.87  Score=21.72  Aligned_cols=31  Identities=23%  Similarity=0.544  Sum_probs=19.7

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHI   95 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~   95 (111)
                      |.|+.|++.--     .   +..   ...+.|..|++.|+-.
T Consensus        27 y~C~fCgk~~v-----k---R~a---~GIW~C~~C~~~~AGG   57 (72)
T 3jyw_9           27 YDCSFCGKKTV-----K---RGA---AGIWTCSCCKKTVAGG   57 (72)
T ss_dssp             BCCSSCCSSCB-----S---BCS---SSCBCCSSSCCCCCCS
T ss_pred             ccCCCCCCcee-----E---ecC---CCeEECCCCCCEEeCC
Confidence            88999986621     1   111   1278899998887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.74
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.72
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.53
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.5
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.46
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.46
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.44
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.43
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.42
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.38
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.37
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.37
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.34
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.33
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.33
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.32
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.3
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.28
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.24
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.22
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.22
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.21
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.19
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.18
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.15
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.15
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.06
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.97
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.94
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.93
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.93
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.88
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.85
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.8
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.77
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.75
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.74
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.7
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.58
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.55
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.53
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.5
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.49
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.44
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.41
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.39
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.22
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.17
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.14
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.14
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.13
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.12
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.11
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.11
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.03
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.03
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.99
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.99
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.98
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.92
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.89
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.86
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.85
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.84
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.8
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.75
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.75
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.73
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.73
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.72
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.71
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.69
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.67
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.64
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.53
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.27
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.19
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.13
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.08
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.06
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	97.04
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.03
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.02
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.98
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.92
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.89
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.87
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.67
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.65
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.59
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.49
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.31
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.22
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.96
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.96
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.92
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.76
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	95.29
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.19
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.05
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.89
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.79
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	94.37
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	94.3
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.21
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.41
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	92.66
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	91.74
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	90.66
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	90.22
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.45
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	88.93
d1fu9a_	36	U-shaped transcription factor, different fingers {	87.59
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	87.28
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	85.65
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	85.18
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	85.17
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	84.56
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	84.49
d1brfa_	53	Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2	84.01
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	83.67
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	83.64
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	83.4
d2dsxa1	52	Rubredoxin {Desulfovibrio gigas [TaxId: 879]}	81.75

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.1e-19  Score=79.84  Aligned_cols=50  Identities=30%  Similarity=0.630  Sum_probs=27.5

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccchhHHHHHHHh
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHISSLKKHMALK  105 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (111)
                      |.| .||+.|.....|..|+++|.+++ ||.|.+|++.|...+.|..|+++|
T Consensus         4 y~C-~Cgk~F~~~~~l~~H~~~Ht~ek-py~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           4 YPC-QCGKSFTHKSQRDRHMSMHLGLR-PYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             EEC-TTSCEESSHHHHHHHHHHHSCCC-SEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CCC-CCCCeECCHHHhHHHhhcccccc-CCcCCCcCCEecCHHHHHHHHhcC
Confidence            555 35555555555555555555544 555555555555555555555443

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.8e-18  Score=77.22  Aligned_cols=53  Identities=30%  Similarity=0.627  Sum_probs=50.5

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcCCCCCCCCCccccCccCcccCCchhhHhhhhhh
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCKQKPQNLDGLFSCDVCGKHYKYKKGLGRHKRYE   76 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~   76 (111)
                      |+||.| .||+.|.....|..|+++|+++++      |.|.+|++.|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekp------y~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP------YGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCS------EECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccC------CcCCCcCCEecCHHHHHHHHhcC
Confidence            689999 599999999999999999999999      99999999999999999999875

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-15  Score=64.19  Aligned_cols=37  Identities=30%  Similarity=0.563  Sum_probs=33.8

Q ss_pred             hhhhhhcCCCCccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         71 RHKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        71 ~h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      .|+++|.+++ ||.|.+||+.|...++|..|+++|+||
T Consensus         2 rH~~~Ht~ek-py~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERR-RYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSC-SSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCC-CEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4778888887 999999999999999999999999997

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.9e-15  Score=59.10  Aligned_cols=33  Identities=24%  Similarity=0.486  Sum_probs=30.0

Q ss_pred             hhcCCCCccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         75 YECGQEPKYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      +|++++ ||.|.+|+++|...+.|..|+++|+||
T Consensus         1 IHTgek-py~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEK-PYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCC-CEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCC-CeeCCCCCCEeCchHHhHhhccccCCC
Confidence            366777 999999999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.4e-14  Score=59.23  Aligned_cols=35  Identities=23%  Similarity=0.503  Sum_probs=31.6

Q ss_pred             hhhcCCCCccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         74 RYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ++|+|++ ||.|.+|+++|...+.|..|+++|++++
T Consensus         1 R~HTgek-Py~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEK-PYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCC-CEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCC-CEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            4678877 9999999999999999999999999875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.46  E-value=2.1e-14  Score=56.46  Aligned_cols=29  Identities=17%  Similarity=0.413  Sum_probs=27.3

Q ss_pred             CccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         81 PKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      +||.|.+|++.|...+.|..|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            48999999999999999999999999997

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.4e-14  Score=59.99  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=32.1

Q ss_pred             hhhhhcCCCCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016          9 YLSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      .|+++|++++||.|++|++.|...++|..|+++|+|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            3778888999999999999999999999999988874

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.9e-14  Score=59.71  Aligned_cols=30  Identities=17%  Similarity=0.414  Sum_probs=23.5

Q ss_pred             ccccCCCCcccccchhHHHHHH-HhhCCCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMA-LKHGVESQ  111 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~-~~~~ek~~  111 (111)
                      ||.|.+||+.|...++|..|++ +|+|||||
T Consensus         5 py~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy   35 (39)
T d2epsa1           5 PYICQSCGKGFSRPDHLNGHIKQVHTSERPH   35 (39)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCCCCCC
T ss_pred             CccCCCCCCCcCChHHhhccCcCccCCCcCc
Confidence            7888888888888888888864 67788876

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.9e-14  Score=55.26  Aligned_cols=29  Identities=28%  Similarity=0.643  Sum_probs=27.2

Q ss_pred             CccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         81 PKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      +||.|.+|++.|...+.|..|+++|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            48999999999999999999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=55.87  Aligned_cols=33  Identities=18%  Similarity=0.334  Sum_probs=29.9

Q ss_pred             hcCCCCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         13 WQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +|++++||.|.+|++.|...+.|..|+++|+++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            578999999999999999999999999999874

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.8e-13  Score=56.89  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             hhhhcCCCCceecCCCcccccchhHHHHHHhhhcC
Q psy12016         10 LSVWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCK   44 (111)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (111)
                      |.++|++++||.|+.|++.|..+.+|..|+++|..
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            67899999999999999999999999999998864

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.8e-13  Score=56.45  Aligned_cols=35  Identities=31%  Similarity=0.584  Sum_probs=30.7

Q ss_pred             hhhcCCCCccccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         74 RYECGQEPKYECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ++|+|++ ||.|+.|++.|...++|..|++.+|+++
T Consensus         1 R~HTgek-P~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           1 RTHSGEK-PYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSCCC-SEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CccCCCC-CEeCCCCcccccchHHHHHHcccccCCC
Confidence            4678877 9999999999999999999998877765

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.3e-13  Score=57.34  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             hhhhhcCCCCccccCCCCcccccchhHHHHHHHhhC
Q psy12016         72 HKRYECGQEPKYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        72 h~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      |.++|++++ ||.|.+|++.|...++|..|+++|.+
T Consensus         2 h~R~HTgeK-Py~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIK-PFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSS-SBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCcc-CeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            678888887 99999999999999999999998864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.5e-13  Score=54.80  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=30.4

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      ++|++++||.|..|++.|..+..|..|+++|.++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            5789999999999999999999999999988764

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.2e-13  Score=55.21  Aligned_cols=36  Identities=22%  Similarity=0.456  Sum_probs=27.1

Q ss_pred             CCCceecCCCcccccchhHHHHHHh-hhcCCCCCCCCCccccC
Q psy12016         16 DSGMFTCDVCFKEYKYKRGLVRHKK-NSCKQKPQNLDGLFSCD   57 (111)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~-~~~~~~~~~~~~~~~c~   57 (111)
                      .++||.|..|++.|....+|.+|++ +|+++++      |.|.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp------y~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP------HKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC------CCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcC------cCCc
Confidence            4577888888888888888888864 5777777      7775

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=4.1e-13  Score=52.06  Aligned_cols=27  Identities=19%  Similarity=0.490  Sum_probs=25.1

Q ss_pred             CccccCCCCcccccchhHHHHHHHhhC
Q psy12016         81 PKYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      +||.|.+|++.|...++|..|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            399999999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=3.7e-13  Score=54.94  Aligned_cols=32  Identities=13%  Similarity=0.397  Sum_probs=27.7

Q ss_pred             hcCCCCccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         76 ECGQEPKYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      ++|++ ||.|.+|++.|...++|..|+++|+++
T Consensus         2 ~TGek-Py~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKR-PFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCS-CEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCc-cccCCCCCCcccChHHHHHHccccCCc
Confidence            45666 999999999999999999999998865

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=2.8e-13  Score=59.10  Aligned_cols=41  Identities=15%  Similarity=0.317  Sum_probs=35.2

Q ss_pred             hhhHhhhhhhcCCCCccccCC--CCcccccchhHHHHHHHhhCCC
Q psy12016         67 KGLGRHKRYECGQEPKYECDQ--CPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        67 ~~l~~h~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      ..+..|+. +.+++ ||.|.+  |++.|...++|..|+++|+|||
T Consensus         5 ~~l~~h~~-h~gek-py~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDK-TFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTT-EEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCC-CeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34556664 88877 999987  9999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.7e-12  Score=52.93  Aligned_cols=32  Identities=22%  Similarity=0.491  Sum_probs=29.0

Q ss_pred             cCCCCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         14 QNDSGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      |++++||.|.+|++.|..+.+|.+|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            67899999999999999999999999998765

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.5e-12  Score=50.42  Aligned_cols=28  Identities=18%  Similarity=0.543  Sum_probs=24.9

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcC
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCK   44 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (111)
                      |+||.|++|++.|..+..|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5789999999999999999999998875

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-12  Score=49.54  Aligned_cols=26  Identities=23%  Similarity=0.462  Sum_probs=23.8

Q ss_pred             CccccCCCCcccccchhHHHHHHHhh
Q psy12016         81 PKYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      +||.|.+||++|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            48999999999999999999999985

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-12  Score=50.37  Aligned_cols=28  Identities=21%  Similarity=0.463  Sum_probs=25.9

Q ss_pred             CccccCC--CCcccccchhHHHHHHHhhCC
Q psy12016         81 PKYECDQ--CPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      +||.|.+  |++.|...+.|+.|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4899988  999999999999999999987

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.7e-12  Score=50.16  Aligned_cols=28  Identities=21%  Similarity=0.484  Sum_probs=25.8

Q ss_pred             CccccCC--CCcccccchhHHHHHHHhhCC
Q psy12016         81 PKYECDQ--CPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      +||.|.+  |++.|...+.|+.|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4899977  999999999999999999997

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.2e-12  Score=52.15  Aligned_cols=29  Identities=24%  Similarity=0.534  Sum_probs=17.5

Q ss_pred             cccCC--CCcccccchhHHHHHHHhhCCCCC
Q psy12016         83 YECDQ--CPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        83 ~~C~~--C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      |.|++  |++.|.....|++|+++|+||+||
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy   32 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDY   32 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCE
Confidence            44543  666666666666666666666665

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=7.2e-12  Score=51.52  Aligned_cols=32  Identities=9%  Similarity=0.250  Sum_probs=27.6

Q ss_pred             hhcCCCCceecCCCcccccchhHHHHHHhhhc
Q psy12016         12 VWQNDSGMFTCDVCFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   43 (111)
                      ++|++++||.|+.|++.|..+.+|..|++.+.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            47899999999999999999999999976543

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.19  E-value=6.9e-12  Score=49.05  Aligned_cols=28  Identities=25%  Similarity=0.642  Sum_probs=21.8

Q ss_pred             CceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +||.|+.|++.|.....|.+|+++|+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            4777888888888888888888887775

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.3e-12  Score=48.62  Aligned_cols=28  Identities=25%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             CceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +||.|++|++.|..+..|.+|+++|+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            4677777777777777777777777765

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.9e-12  Score=49.44  Aligned_cols=29  Identities=21%  Similarity=0.473  Sum_probs=25.9

Q ss_pred             CccccC--CCCcccccchhHHHHHHHhhCCC
Q psy12016         81 PKYECD--QCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        81 ~~~~C~--~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      +||.|+  .|++.|...++|..|+++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            389995  59999999999999999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.7e-11  Score=46.33  Aligned_cols=26  Identities=23%  Similarity=0.534  Sum_probs=22.3

Q ss_pred             CceecCCCcccccchhHHHHHHhhhc
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~   43 (111)
                      +||.|.+||+.|...+.|.+|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            58889999999999999998888874

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=3e-11  Score=52.54  Aligned_cols=38  Identities=16%  Similarity=0.336  Sum_probs=27.0

Q ss_pred             HHhhhhhcCCCCceecCC--CcccccchhHHHHHHhhhcCC
Q psy12016          7 LEYLSVWQNDSGMFTCDV--CFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus         7 l~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      |..|. .|.+++||.|..  |++.|.....|..|+++|+++
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             hcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            34444 367777777766  777777777777777777765

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.3e-10  Score=45.14  Aligned_cols=27  Identities=26%  Similarity=0.672  Sum_probs=24.1

Q ss_pred             CccccCC--CCcccccchhHHHHHHHhhC
Q psy12016         81 PKYECDQ--CPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~  107 (111)
                      +||.|.+  |++.|...++|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4899977  99999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.5e-10  Score=44.29  Aligned_cols=28  Identities=21%  Similarity=0.407  Sum_probs=21.2

Q ss_pred             CceecCC--CcccccchhHHHHHHhhhcCC
Q psy12016         18 GMFTCDV--CFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        18 ~~~~C~~--C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +||.|+.  |++.|..+..|..|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4677777  888888888888888777764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.8e-10  Score=43.94  Aligned_cols=28  Identities=21%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             CceecCC--CcccccchhHHHHHHhhhcCC
Q psy12016         18 GMFTCDV--CFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        18 ~~~~C~~--C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +||.|+.  |++.|.....|..|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4788876  888888888888888888764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.2e-10  Score=45.49  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=12.5

Q ss_pred             CcccccchhHHHHHHhhhcCCCC
Q psy12016         25 CFKEYKYKRGLVRHKKNSCKQKP   47 (111)
Q Consensus        25 C~~~f~~~~~l~~h~~~~~~~~~   47 (111)
                      |++.|..+..|.+|+++|+++++
T Consensus         9 C~k~F~~~~~L~~H~r~Htgekp   31 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMKLHSDTRD   31 (36)
T ss_dssp             TCCEESSHHHHHHHHHHHHTSCC
T ss_pred             CCCeeCChhHhccccCeeCCCCC
Confidence            55555555555555555555555

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.4e-10  Score=43.18  Aligned_cols=26  Identities=23%  Similarity=0.498  Sum_probs=22.4

Q ss_pred             CccccCC--CCcccccchhHHHHHHHhh
Q psy12016         81 PKYECDQ--CPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~~  106 (111)
                      +||.|.+  |++.|...++|+.|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            3888977  9999999999999998885

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=1.1e-09  Score=43.49  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=23.6

Q ss_pred             CccccCC--CCcccccchhHHHHHHHhhCC
Q psy12016         81 PKYECDQ--CPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      +||.|.+  |++.|...++|..|+++|+..
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            3889977  999999999999999888763

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.4e-10  Score=42.44  Aligned_cols=30  Identities=17%  Similarity=0.407  Sum_probs=24.4

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVESQ  111 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek~~  111 (111)
                      ...|+.||+.|...-.|.+|.-+|.+||||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            457888888888888888888888888887

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.9e-09  Score=41.98  Aligned_cols=28  Identities=29%  Similarity=0.539  Sum_probs=19.5

Q ss_pred             CceecC--CCcccccchhHHHHHHhhhcCC
Q psy12016         18 GMFTCD--VCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        18 ~~~~C~--~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +||.|+  .|++.|....+|.+|+++|+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            367774  3777777777777777777765

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=4.9e-09  Score=41.53  Aligned_cols=28  Identities=32%  Similarity=0.654  Sum_probs=21.7

Q ss_pred             CCceecCC--CcccccchhHHHHHHhhhcC
Q psy12016         17 SGMFTCDV--CFKEYKYKRGLVRHKKNSCK   44 (111)
Q Consensus        17 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~~   44 (111)
                      |+||.|+.  |++.|....+|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            46788877  88888888888888887764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=3.9e-09  Score=40.86  Aligned_cols=27  Identities=22%  Similarity=0.498  Sum_probs=21.6

Q ss_pred             CceecCC--CcccccchhHHHHHHhhhcC
Q psy12016         18 GMFTCDV--CFKEYKYKRGLVRHKKNSCK   44 (111)
Q Consensus        18 ~~~~C~~--C~~~f~~~~~l~~h~~~~~~   44 (111)
                      +||.|+.  |++.|.....|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4788877  88888888888888888765

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=4.4e-09  Score=39.06  Aligned_cols=26  Identities=19%  Similarity=0.494  Sum_probs=23.6

Q ss_pred             CccccCCCCcccccchhHHHHHHHhh
Q psy12016         81 PKYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      +||.|..||+.|+.....++|.++|.
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCcccchhhhhhhcchhhhhhhhhcc
Confidence            39999999999999999999998874

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=9.4e-09  Score=39.36  Aligned_cols=25  Identities=20%  Similarity=0.440  Sum_probs=15.6

Q ss_pred             CceecCC--CcccccchhHHHHHHhhh
Q psy12016         18 GMFTCDV--CFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        18 ~~~~C~~--C~~~f~~~~~l~~h~~~~   42 (111)
                      +||.|+.  |++.|....+|.+|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            3566655  666666666666666655

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.2e-08  Score=36.65  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=14.0

Q ss_pred             cccCCCCcccccchhHHHHHHHhhC
Q psy12016         83 YECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      .+|+.|++.|.....|+.|++.|+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            3455555555555555555555543

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.2e-08  Score=36.86  Aligned_cols=28  Identities=25%  Similarity=0.597  Sum_probs=24.8

Q ss_pred             CccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         81 PKYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      +||+|..|...-.+.+.|..|++.|+|+
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CcceeeecccccCCchheEEeeecccCc
Confidence            3899999998888899999999999885

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=7.3e-08  Score=35.72  Aligned_cols=27  Identities=26%  Similarity=0.511  Sum_probs=22.0

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhc
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   43 (111)
                      ++||.|..||+.|.......+|.+.|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            578888888888888888888877763

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.6e-08  Score=36.51  Aligned_cols=26  Identities=27%  Similarity=0.465  Sum_probs=18.7

Q ss_pred             cccCCCCcccccchhHHHHHHHhhCC
Q psy12016         83 YECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      ..|.+||++|...+.|++|+-+|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            45777777777777777777777765

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=7.5e-08  Score=34.57  Aligned_cols=24  Identities=29%  Similarity=0.503  Sum_probs=13.5

Q ss_pred             eecCCCcccccchhHHHHHHhhhc
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~~   43 (111)
                      ..|+.|++-|+.+..|.-|++.|+
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CccchhhhHhcchhHHHHHhhccC
Confidence            345555555555555555555554

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.7e-07  Score=35.19  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=25.3

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcCCC
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCKQK   46 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (111)
                      ++||.|++|...|..+..+.-|.++|.+..
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~v   30 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSV   30 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCcc
Confidence            578999999999999998888888887653

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.1e-07  Score=35.76  Aligned_cols=27  Identities=41%  Similarity=0.730  Sum_probs=23.5

Q ss_pred             CccccCC--CCcccccchhHHHHHHHhhC
Q psy12016         81 PKYECDQ--CPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~  107 (111)
                      +||.|..  |++.+...++|++|++++||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            3888876  99999999999999998875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4e-07  Score=34.17  Aligned_cols=27  Identities=26%  Similarity=0.513  Sum_probs=22.2

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      ||.|++|+..|..+.-+.-|.++|.|.
T Consensus         3 p~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           3 PYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CcccchHHHHhhccccceEeeecccCc
Confidence            888888888888888888888887763

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.22  E-value=3e-07  Score=32.63  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=19.5

Q ss_pred             cccCCCCcccccchhHHHHHHHhh
Q psy12016         83 YECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      |+|..|.+.|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            578888888888888888887764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.4e-06  Score=31.82  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=14.2

Q ss_pred             ecCCCcccccchhHHHHHHhhhcC
Q psy12016         21 TCDVCFKEYKYKRGLVRHKKNSCK   44 (111)
Q Consensus        21 ~C~~C~~~f~~~~~l~~h~~~~~~   44 (111)
                      .|.+||+.|...+.|.+|+..|++
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            455666666666666666555554

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.3e-06  Score=32.26  Aligned_cols=26  Identities=42%  Similarity=0.728  Sum_probs=16.6

Q ss_pred             cccCCCCcccccchhHHHHHHHhhCC
Q psy12016         83 YECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      |.|+.|+....-.+-|..|.++|++|
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            45666666666666666666666665

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=1.6e-06  Score=31.92  Aligned_cols=27  Identities=22%  Similarity=0.503  Sum_probs=25.1

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      .|.|..|...|..+..|+.|+.+|+||
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccCC
Confidence            789999999999999999999999986

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.5e-06  Score=32.16  Aligned_cols=28  Identities=39%  Similarity=0.681  Sum_probs=24.9

Q ss_pred             CccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         81 PKYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      +||+|..|...-...++|..|++..|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            3899999998889999999999988875

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.1e-06  Score=32.00  Aligned_cols=26  Identities=31%  Similarity=0.646  Sum_probs=23.4

Q ss_pred             CccccCCCCcccccchhHHHHHHHhh
Q psy12016         81 PKYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      +|++|..|+.+-...++|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            38999999999999999999999885

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.4e-06  Score=31.64  Aligned_cols=27  Identities=37%  Similarity=0.763  Sum_probs=23.6

Q ss_pred             CccccCCCCcccccchhHHHHHHHhhC
Q psy12016         81 PKYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      +||.|..|....+..++|+.|+++-|+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            389999999988999999999988775

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6.5e-07  Score=33.87  Aligned_cols=28  Identities=21%  Similarity=0.424  Sum_probs=22.8

Q ss_pred             CccccCC--CCcccccchhHHHHH-HHhhCC
Q psy12016         81 PKYECDQ--CPHRTKHISSLKKHM-ALKHGV  108 (111)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~-~~~~~e  108 (111)
                      +||.|..  |.++|.+.++..+|+ ++|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            3888876  999999999999997 666553

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.8e-06  Score=32.16  Aligned_cols=27  Identities=33%  Similarity=0.760  Sum_probs=14.1

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQE   80 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~   80 (111)
                      ..|..||++|.....|..|...|.+++
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ek   32 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEK   32 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCC
Confidence            345555555555555555555555444

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.3e-06  Score=30.92  Aligned_cols=28  Identities=18%  Similarity=0.370  Sum_probs=19.4

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcC
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCK   44 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (111)
                      ++||.|..|...-...+.|..|.+.|++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            4577777777777777777777776654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.99  E-value=2.3e-06  Score=34.36  Aligned_cols=27  Identities=22%  Similarity=0.505  Sum_probs=15.6

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      .|.|..|++.|.+...|-.|+..|..+
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             ccCCCCCCCccCCcccccchHhhhcch
Confidence            455666666666666666665555543

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=3.8e-06  Score=30.17  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=15.3

Q ss_pred             ccCCCCcccccchhHHHHHHHhhCCC
Q psy12016         84 ECDQCPHRTKHISSLKKHMALKHGVE  109 (111)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~~~~ek  109 (111)
                      .|+.|.+.|.+.-.|+.|-+.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            35556666666666666666666554

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.3e-06  Score=31.55  Aligned_cols=25  Identities=36%  Similarity=0.602  Sum_probs=21.2

Q ss_pred             ccccCCCCcccccchhHHHHHHHhh
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      ||.|..|+..|....+|..|+++-+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhh
Confidence            6889999999999999999987644

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.92  E-value=6.3e-06  Score=30.39  Aligned_cols=27  Identities=19%  Similarity=0.490  Sum_probs=23.5

Q ss_pred             ccccC--CCCcccccchhHHHHHHHhhCC
Q psy12016         82 KYECD--QCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      ||.|.  -|.+.|...-.|.+|.-+|+||
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CcCcccccccccchhhhhhhhhhccccCC
Confidence            77775  4999999999999999999886

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=1.4e-05  Score=29.33  Aligned_cols=29  Identities=24%  Similarity=0.523  Sum_probs=24.2

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +..|.|..|...|...-.|..|+..|+++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            34688999999999999999999888764

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.86  E-value=1.3e-05  Score=32.13  Aligned_cols=29  Identities=21%  Similarity=0.504  Sum_probs=18.1

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      .+.|.|..|++.|.+...|--|+..|...
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcch
Confidence            34566666666666666666666665443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=1e-05  Score=28.99  Aligned_cols=25  Identities=24%  Similarity=0.474  Sum_probs=16.2

Q ss_pred             ecCCCcccccchhHHHHHHhhhcCC
Q psy12016         21 TCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        21 ~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      .|+.|.+.|.++..|..|-+.|+++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            3666666666666666666666654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=6.9e-06  Score=30.23  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=15.7

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQ   79 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~   79 (111)
                      |.|+.|+....-++.|+.|.++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            55666666666666666666666543

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.2e-05  Score=32.48  Aligned_cols=26  Identities=27%  Similarity=0.556  Sum_probs=22.5

Q ss_pred             CccccCCCCcccccchhHHHHHHHhh
Q psy12016         81 PKYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      +||.|..|++.|-++.++.+|...+.
T Consensus         4 KPYeC~~C~KrFMWRDSF~RH~~~C~   29 (44)
T d2csha2           4 KPYECNICAKRFMWRDSFHRHVTSCT   29 (44)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHHH
T ss_pred             CceeccchhhhhhhHHHHHHhhhhhh
Confidence            39999999999999999999976543

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.75  E-value=7.3e-06  Score=30.92  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=17.4

Q ss_pred             ccccCCCCcccccchhHHHHHHHhh
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      ||.|..|++.|+.+..|-+|++.-|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            5777777777777777777765443

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.4e-05  Score=29.41  Aligned_cols=24  Identities=29%  Similarity=0.592  Sum_probs=20.0

Q ss_pred             ceecCCCcccccchhHHHHHHhhh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      ||.|..|...|..+.+|..||++-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            688888998999998898888753

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=2.1e-05  Score=28.50  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             CceecCCCcccccchhHHHHHHhhhc
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~   43 (111)
                      +|+.|..|+..-...+.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68999999999999999999988874

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=1.7e-05  Score=27.96  Aligned_cols=22  Identities=23%  Similarity=0.584  Sum_probs=20.2

Q ss_pred             ceecCCCcccccchhHHHHHHh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKK   40 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~   40 (111)
                      ||.|..|...|-.+.+|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999975

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.72  E-value=1.4e-05  Score=29.26  Aligned_cols=25  Identities=36%  Similarity=0.630  Sum_probs=20.7

Q ss_pred             ccccC--CCCcccccchhHHHHHHHhh
Q psy12016         82 KYECD--QCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~~~  106 (111)
                      ||.|+  -|++.|+..+-|++|.++|.
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvha   29 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVHA   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhccC
Confidence            78885  48899999999999988774

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.71  E-value=2.3e-05  Score=28.86  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=22.3

Q ss_pred             CceecCC--CcccccchhHHHHHHhhhcCC
Q psy12016         18 GMFTCDV--CFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        18 ~~~~C~~--C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      +||.|..  |++.|.....|.+|..+|+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4677766  888998888888888888764

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.69  E-value=2.5e-05  Score=28.62  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             CceecCC--CcccccchhHHHHHHhhh
Q psy12016         18 GMFTCDV--CFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        18 ~~~~C~~--C~~~f~~~~~l~~h~~~~   42 (111)
                      .||.|+.  |++.|...+.|.+|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4788877  888999988888888765

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=2.9e-05  Score=28.97  Aligned_cols=25  Identities=28%  Similarity=0.596  Sum_probs=17.3

Q ss_pred             CceecCC--CcccccchhHHHHHHhhh
Q psy12016         18 GMFTCDV--CFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        18 ~~~~C~~--C~~~f~~~~~l~~h~~~~   42 (111)
                      +||.|..  |++.+...+.|..|++.+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhh
Confidence            4677766  777777777777777654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.64  E-value=2.5e-05  Score=27.51  Aligned_cols=23  Identities=26%  Similarity=0.707  Sum_probs=15.2

Q ss_pred             eecCCCcccccchhHHHHHHhhh
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      |.|..|...|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            45666777777777777666654

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.53  E-value=3.5e-05  Score=29.02  Aligned_cols=22  Identities=23%  Similarity=0.721  Sum_probs=16.4

Q ss_pred             ceecCCCcccccchhHHHHHHh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKK   40 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~   40 (111)
                      ||.|..|++.|..+..+.+|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            6778888888887777777753

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00019  Score=26.39  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=14.5

Q ss_pred             ceecCCCcccccchhHHHHHHhhh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      ||.|..|...-...++|..|+++.
T Consensus         2 py~cqyc~yrsadssnlkthiktk   25 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhcc
Confidence            566666666666666666665543

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00032  Score=25.72  Aligned_cols=25  Identities=28%  Similarity=0.469  Sum_probs=19.9

Q ss_pred             CceecCCCcccccchhHHHHHHhhh
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNS   42 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~   42 (111)
                      +||.|..|.....+.++|..|++.-
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~   25 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKF   25 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHH
Confidence            4788888888888888888887643

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00018  Score=26.04  Aligned_cols=25  Identities=16%  Similarity=0.410  Sum_probs=15.6

Q ss_pred             ccccCCCCcccccchhHHHHHHHhh
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      |.+|..|.....+...|+.|.++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4556666666666666666666654

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.08  E-value=0.00034  Score=24.63  Aligned_cols=22  Identities=36%  Similarity=0.833  Sum_probs=19.4

Q ss_pred             eecCCCcccccchhHHHHHHhh
Q psy12016         20 FTCDVCFKEYKYKRGLVRHKKN   41 (111)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~   41 (111)
                      |.|+.|.+.|..+.++..|.+.
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999988764

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00033  Score=25.16  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=14.8

Q ss_pred             ccccCCCCcccccchhHHHHHH
Q psy12016         82 KYECDQCPHRTKHISSLKKHMA  103 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (111)
                      ||.|..||+.+-.+.+|.+|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5677777777767667666643

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00022  Score=27.41  Aligned_cols=26  Identities=15%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      .|.|..|++.|..++.+.+|...++|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47788888888888888888777665

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00048  Score=24.73  Aligned_cols=23  Identities=35%  Similarity=0.582  Sum_probs=15.1

Q ss_pred             ceecCCCcccccchhHHHHHHhh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKN   41 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~   41 (111)
                      ||.|..||+-+-.+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            56677777777777766666543

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00057  Score=27.08  Aligned_cols=28  Identities=25%  Similarity=0.477  Sum_probs=21.0

Q ss_pred             CCCceecCC--CcccccchhHHHHHHhhhc
Q psy12016         16 DSGMFTCDV--CFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        16 ~~~~~~C~~--C~~~f~~~~~l~~h~~~~~   43 (111)
                      .++||.|..  |+..|.....|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            367888844  8888888888888877664

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.00035  Score=24.50  Aligned_cols=22  Identities=27%  Similarity=0.703  Sum_probs=16.8

Q ss_pred             ccccCCCCcccccchhHHHHHH
Q psy12016         82 KYECDQCPHRTKHISSLKKHMA  103 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (111)
                      ||+|..|...|-...+|..|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            6778888888877777777764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00076  Score=27.10  Aligned_cols=25  Identities=20%  Similarity=0.655  Sum_probs=19.8

Q ss_pred             CCCceecCCCcccccchhHHHHHHh
Q psy12016         16 DSGMFTCDVCFKEYKYKRGLVRHKK   40 (111)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~   40 (111)
                      +-+||.|..|++.|--...+.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            4578889999988888888877753

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00045  Score=27.37  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=21.4

Q ss_pred             Ccccc--CCCCcccccchhHHHHHHHhh
Q psy12016         81 PKYEC--DQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        81 ~~~~C--~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      +||.|  +-|+..|.+...|..|.+.|.
T Consensus         5 kPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CceecCCCCccccccchHHHHHhhhhhe
Confidence            48999  569999999999988887664

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00029  Score=26.44  Aligned_cols=21  Identities=19%  Similarity=0.597  Sum_probs=11.5

Q ss_pred             ceecCC--CcccccchhHHHHHH
Q psy12016         19 MFTCDV--CFKEYKYKRGLVRHK   39 (111)
Q Consensus        19 ~~~C~~--C~~~f~~~~~l~~h~   39 (111)
                      ||.|..  |.+.|+..++-..|+
T Consensus         2 PY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHH
T ss_pred             CccccCCChhhhhcchhhhhhhc
Confidence            555555  555555555555554

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.67  E-value=0.00095  Score=23.44  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             cccCCCCcccccchhHHHHHHHhh
Q psy12016         83 YECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      |.|+.|-+.|..+.++..|.++-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            568888888888888888887654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0011  Score=27.61  Aligned_cols=26  Identities=23%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             CceecCCCcccccchhHHHHHHhhhc
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~   43 (111)
                      ..|.|..|++.|.....|++|...|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            45778888888888888888877664

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00077  Score=28.05  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=17.8

Q ss_pred             ccccCCCCcccccchhHHHHHHHh
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALK  105 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~  105 (111)
                      .+.|..|++.|.....|+.|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            567778888888777777776655

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0022  Score=23.09  Aligned_cols=25  Identities=24%  Similarity=0.394  Sum_probs=16.4

Q ss_pred             ceecCCCcccccchhHHHHHHhhhc
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKNSC   43 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~   43 (111)
                      |-.|+.|++..+.+..|..|.+.|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            3456777777777777777766654

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00083  Score=25.99  Aligned_cols=19  Identities=26%  Similarity=0.317  Sum_probs=12.1

Q ss_pred             cccCCchhhHhhhhhhcCC
Q psy12016         61 KHYKYKKGLGRHKRYECGQ   79 (111)
Q Consensus        61 ~~~~~~~~l~~h~~~~~~~   79 (111)
                      +.|.+...|..|+++|+|+
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            4566666677777766653

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0024  Score=22.91  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=19.3

Q ss_pred             ceecCCCcccccchhHHHHHHhh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKN   41 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~   41 (111)
                      .|.|+.|+.....+++|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            37799999999999999988764

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.22  E-value=0.0037  Score=25.86  Aligned_cols=31  Identities=19%  Similarity=0.480  Sum_probs=24.9

Q ss_pred             CCCccccCCCCcccccchhHHHHHHHhhCCCC
Q psy12016         79 QEPKYECDQCPHRTKHISSLKKHMALKHGVES  110 (111)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~ek~  110 (111)
                      ++ |..|+.|+-......+|++|+..-|--||
T Consensus        22 ~q-patcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          22 EQ-PATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             SC-CEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             cC-CCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            45 88899999888888899999887776555

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0027  Score=24.50  Aligned_cols=20  Identities=25%  Similarity=0.094  Sum_probs=17.1

Q ss_pred             CcccccchhHHHHHHHhhCC
Q psy12016         89 PHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        89 ~~~f~~~~~l~~H~~~~~~e  108 (111)
                      ++.|...--|..|+++|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            35688888999999999997

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.96  E-value=0.0039  Score=22.18  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=17.2

Q ss_pred             CCCCcccccchhHHHHHHHhh
Q psy12016         86 DQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        86 ~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      .-|+++|...+.|+.|+-+|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            348899999899999888775

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0035  Score=23.94  Aligned_cols=23  Identities=30%  Similarity=0.707  Sum_probs=19.2

Q ss_pred             ceecCCCcccccchhHHHHHHhh
Q psy12016         19 MFTCDVCFKEYKYKRGLVRHKKN   41 (111)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~   41 (111)
                      .|.|..|++.|.....+.+|-..
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            58899999999999888888554

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0087  Score=21.75  Aligned_cols=29  Identities=17%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhCCCC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHGVES  110 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~ek~  110 (111)
                      .|.|..|++...+...++-|.-..|...|
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~~p   30 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNSLP   30 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCCCS
T ss_pred             ceechhHHHHHhhccCceEEEeecccCCc
Confidence            46777788888777777777766655443

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.29  E-value=0.007  Score=23.16  Aligned_cols=26  Identities=31%  Similarity=0.668  Sum_probs=21.3

Q ss_pred             ccccCCCCcccccchhHHHHHHHhhC
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      .|.|..|.+.+..-+++.+|--+.|.
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             EEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            78899999999888888888766654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0029  Score=28.74  Aligned_cols=25  Identities=20%  Similarity=0.470  Sum_probs=20.0

Q ss_pred             CCceecCCCcccccchhHHHHHHhh
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKN   41 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~   41 (111)
                      .+.|.|..|++.|.+...|..|.++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCEEecccccCccCCHHHHHHHHcc
Confidence            3457899999999999888888754

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.05  E-value=0.012  Score=22.19  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=17.2

Q ss_pred             CceecCCCcccccchhHHHHHHh
Q psy12016         18 GMFTCDVCFKEYKYKRGLVRHKK   40 (111)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~   40 (111)
                      -.|.|..||-.|++.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            34778888888888888877764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0029  Score=28.72  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=18.5

Q ss_pred             ccccCCCCcccccchhHHHHHH
Q psy12016         82 KYECDQCPHRTKHISSLKKHMA  103 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (111)
                      .|.|..|++.|.+...|..|.+
T Consensus        15 qfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTT
T ss_pred             EEecccccCccCCHHHHHHHHc
Confidence            5789999999999888888864

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.0072  Score=21.77  Aligned_cols=19  Identities=21%  Similarity=0.473  Sum_probs=15.7

Q ss_pred             CCCcccccchhHHHHHHHh
Q psy12016         87 QCPHRTKHISSLKKHMALK  105 (111)
Q Consensus        87 ~C~~~f~~~~~l~~H~~~~  105 (111)
                      -|++.|...+.+++|+.+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            4888898888888888766

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.37  E-value=0.013  Score=23.23  Aligned_cols=25  Identities=20%  Similarity=0.611  Sum_probs=16.8

Q ss_pred             ccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcc
Q psy12016         53 LFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHR   91 (111)
Q Consensus        53 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~   91 (111)
                      .|.|..||...             .++. |..|++|+..
T Consensus         5 ~~~C~vCG~i~-------------~g~~-P~~CPvCg~~   29 (37)
T d1nnqa2           5 VYICPICGYTA-------------VDEA-PEYCPVCGAP   29 (37)
T ss_dssp             EEECTTTCCEE-------------ESCC-CSBCTTTCCB
T ss_pred             EEECCCCCCEe-------------cCCC-CCcCCCCCCc
Confidence            47888888662             2333 7788888743

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=94.30  E-value=0.014  Score=23.00  Aligned_cols=24  Identities=25%  Similarity=0.674  Sum_probs=16.2

Q ss_pred             ccccCccCcccCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         53 LFSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        53 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      .|.|..||..             +.++. |-.|+.|+.
T Consensus         5 ~~vC~vCGyi-------------~~g~~-Pe~CPvCg~   28 (36)
T d1yuza2           5 FHLCPICGYI-------------HKGED-FEKCPICFR   28 (36)
T ss_dssp             EEECSSSCCE-------------EESSC-CSBCTTTCC
T ss_pred             EEECCCCCCE-------------eeCCC-CCcCCCCCC
Confidence            3788888865             22433 778888874

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.21  E-value=0.03  Score=20.61  Aligned_cols=27  Identities=22%  Similarity=0.502  Sum_probs=16.9

Q ss_pred             ccccC--CCCcccccchhHHHHHHHhhCC
Q psy12016         82 KYECD--QCPHRTKHISSLKKHMALKHGV  108 (111)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~~~~e  108 (111)
                      .|.|.  .|+-.|.-..-|..|+-.|+||
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            45554  3666666666667777666665

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.033  Score=24.72  Aligned_cols=17  Identities=24%  Similarity=0.581  Sum_probs=10.0

Q ss_pred             CCceecCCCcccccchh
Q psy12016         17 SGMFTCDVCFKEYKYKR   33 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~   33 (111)
                      ...|.|+.|++.|....
T Consensus        12 ~~~y~Cp~C~~~ys~Ld   28 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLE   28 (62)
T ss_dssp             SSEEECSSSCCEEEHHH
T ss_pred             CCceECCCCCCCcchhh
Confidence            34466666666665543

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.058  Score=23.84  Aligned_cols=29  Identities=14%  Similarity=0.335  Sum_probs=25.1

Q ss_pred             CCceecCCCcccccchhHHHHHHhhhcCC
Q psy12016         17 SGMFTCDVCFKEYKYKRGLVRHKKNSCKQ   45 (111)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (111)
                      ..-|.|..|+..|...+.|..|...|..+
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhccHH
Confidence            34699999999999999999999888643

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.091  Score=18.86  Aligned_cols=19  Identities=16%  Similarity=0.195  Sum_probs=14.3

Q ss_pred             CCCCcccccchhHHHHHHH
Q psy12016         86 DQCPHRTKHISSLKKHMAL  104 (111)
Q Consensus        86 ~~C~~~f~~~~~l~~H~~~  104 (111)
                      +-|++.|+++..|..|.+-
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            4588888888888877663

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.064  Score=23.72  Aligned_cols=25  Identities=20%  Similarity=0.721  Sum_probs=17.2

Q ss_pred             ccccCCCCcccccchhHHHHHHHhh
Q psy12016         82 KYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      .|.|..|+..|-+-..|..|+..|.
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhcc
Confidence            5677777777777777777766554

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.17  Score=19.26  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=17.3

Q ss_pred             ccccCCCCcccccchhHHHHHHH
Q psy12016         82 KYECDQCPHRTKHISSLKKHMAL  104 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (111)
                      -|.|+.|-+...+...+.+|+..
T Consensus         7 LyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           7 LYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeehhhhhhhCCHHHHHHHHHh
Confidence            67788888777777777777654

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.45  E-value=0.23  Score=17.84  Aligned_cols=26  Identities=31%  Similarity=0.635  Sum_probs=18.2

Q ss_pred             ccccC--CCCcccccchhHHHHHHHhhC
Q psy12016         82 KYECD--QCPHRTKHISSLKKHMALKHG  107 (111)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~~~~  107 (111)
                      .|.|+  .|+-.|....+++.|....|.
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhcc
Confidence            35564  488888888888888765553

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=88.93  E-value=0.04  Score=22.64  Aligned_cols=24  Identities=29%  Similarity=0.747  Sum_probs=16.3

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPH   90 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~   90 (111)
                      |.|..||....             |...|-.|+.|+.
T Consensus         9 W~C~~CGyi~~-------------g~~aP~~CPvC~~   32 (44)
T d1lkoa2           9 WRCRNCGYVHE-------------GTGAPELCPACAH   32 (44)
T ss_dssp             EEETTTCCEEE-------------EEECCSBCTTTCC
T ss_pred             EEcCCCCcEEE-------------CCCCCCcCCCCCC
Confidence            78888887632             2233778888874

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.59  E-value=0.3  Score=18.69  Aligned_cols=22  Identities=14%  Similarity=0.313  Sum_probs=15.3

Q ss_pred             ccCCCCcccccchhHHHHHHHh
Q psy12016         84 ECDQCPHRTKHISSLKKHMALK  105 (111)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~~  105 (111)
                      -|..|+-.|.+.+.+..|.+-.
T Consensus        10 YC~~CDI~Fn~~~T~~aHKk~Y   31 (36)
T d1fu9a_          10 YCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             EETTTTEECSSHHHHHHHHHHT
T ss_pred             HHhhCCceehhHHHHHHHHHhc
Confidence            4777777777777777776543

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=87.28  E-value=0.24  Score=20.34  Aligned_cols=10  Identities=50%  Similarity=1.258  Sum_probs=5.0

Q ss_pred             eecCCCcccc
Q psy12016         20 FTCDVCFKEY   29 (111)
Q Consensus        20 ~~C~~C~~~f   29 (111)
                      |.|..|+..+
T Consensus         4 y~C~~CgyiY   13 (45)
T d6rxna_           4 YVCNVCGYEY   13 (45)
T ss_dssp             EEETTTCCEE
T ss_pred             eEeCCCCeEE
Confidence            4455555444

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=85.18  E-value=0.29  Score=19.15  Aligned_cols=33  Identities=9%  Similarity=0.010  Sum_probs=19.9

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHI   95 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~   95 (111)
                      +.|+.||..|-..        ...... .-.|+.||..+..+
T Consensus         3 ~vc~~cG~~Yh~~--------~~pPk~-~g~CD~cg~~L~qR   35 (37)
T d2ak3a2           3 WIHPGSGRVYNIE--------FNPPKT-MGIDDLTGEPLVQR   35 (37)
T ss_dssp             EEETTTTEEEETT--------TBCCSS-TTBCTTTCCBCBCC
T ss_pred             eeeCCcCChhhhc--------cCCccc-cCCccCCCCcCEec
Confidence            5688888775432        233333 66788888665543

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.17  E-value=0.23  Score=24.25  Aligned_cols=9  Identities=33%  Similarity=1.021  Sum_probs=4.8

Q ss_pred             ccCccCccc
Q psy12016         55 SCDVCGKHY   63 (111)
Q Consensus        55 ~c~~c~~~~   63 (111)
                      .|..||..|
T Consensus        69 ~CrkCGfvF   77 (105)
T d2gmga1          69 QCRKCGFVF   77 (105)
T ss_dssp             BBTTTCCBC
T ss_pred             hhhhcCCee
Confidence            455555555

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.56  E-value=0.34  Score=19.93  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=16.9

Q ss_pred             ccccCCCCcccccchhHHHHH
Q psy12016         82 KYECDQCPHRTKHISSLKKHM  102 (111)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~  102 (111)
                      +-.|..|+..+....+.+.|+
T Consensus         6 ~~eC~lC~vKYs~~~SvrdHi   26 (48)
T d2yrka1           6 KPECTLCGVKYSARLSIRDHI   26 (48)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHH
T ss_pred             cccCcccceeeeeecchHhhh
Confidence            467889998888888888775

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.49  E-value=0.35  Score=18.99  Aligned_cols=33  Identities=12%  Similarity=0.134  Sum_probs=19.5

Q ss_pred             cccCccCcccCCchhhHhhhhhhcCCCCccccCCCCcccccc
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECGQEPKYECDQCPHRTKHI   95 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~C~~~f~~~   95 (111)
                      ..|+.||..|-..        ...... .-.|..|+..+..+
T Consensus         3 r~C~~cG~~Yh~~--------~~ppk~-~g~CD~cg~~L~qR   35 (38)
T d1akya2           3 LIHPASGRSYHKI--------FNPPKE-DMKDDVTGEALVQR   35 (38)
T ss_dssp             EECTTTCCEEETT--------TBCCSS-TTBCTTTCCBCBCC
T ss_pred             cCCcCccchhhhh--------ccCcCc-CCccCCCCCEeeec
Confidence            5688888775432        222333 56788888665443

>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.01  E-value=0.15  Score=21.73  Aligned_cols=11  Identities=27%  Similarity=0.863  Sum_probs=5.6

Q ss_pred             eecCCCccccc
Q psy12016         20 FTCDVCFKEYK   30 (111)
Q Consensus        20 ~~C~~C~~~f~   30 (111)
                      |.|..|+..+.
T Consensus         3 y~C~~CgyiYd   13 (53)
T d1brfa_           3 WVCKICGYIYD   13 (53)
T ss_dssp             EEETTTCCEEE
T ss_pred             eECCCCCcEEC
Confidence            45555555443

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.67  E-value=0.49  Score=23.76  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=17.2

Q ss_pred             cccCccCcccCCchhhHhhhhhhcC
Q psy12016         54 FSCDVCGKHYKYKKGLGRHKRYECG   78 (111)
Q Consensus        54 ~~c~~c~~~~~~~~~l~~h~~~~~~   78 (111)
                      .+|..|...|.....+..|++..|+
T Consensus        16 ~~CLFCd~~f~s~~~~l~H~k~~H~   40 (121)
T d1wira_          16 TPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             ceecccCCccCCHHHHHHHHHHhhC
Confidence            5677777777777777777765544

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.64  E-value=0.2  Score=21.35  Aligned_cols=8  Identities=25%  Similarity=0.908  Sum_probs=4.2

Q ss_pred             ccccCCCC
Q psy12016         82 KYECDQCP   89 (111)
Q Consensus        82 ~~~C~~C~   89 (111)
                      .|.|+.|+
T Consensus        36 dw~CP~C~   43 (53)
T d1iroa_          36 DWVCPLCG   43 (53)
T ss_dssp             TCBCTTTC
T ss_pred             CCCCcCCC
Confidence            34555555

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=83.40  E-value=0.31  Score=25.99  Aligned_cols=39  Identities=21%  Similarity=0.390  Sum_probs=25.9

Q ss_pred             hhhHhhhhhhcCCCC------ccccCCCCcccccchhHHHHHHHhh
Q psy12016         67 KGLGRHKRYECGQEP------KYECDQCPHRTKHISSLKKHMALKH  106 (111)
Q Consensus        67 ~~l~~h~~~~~~~~~------~~~C~~C~~~f~~~~~l~~H~~~~~  106 (111)
                      ..|..|.+...-..+      -|+|..||+ +..-.++..|++.|-
T Consensus       125 grlieHiK~~m~~GqDyvFWQFYKCe~CgK-YvDie~~~~H~k~HG  169 (218)
T d2czra1         125 AALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHG  169 (218)
T ss_dssp             HHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             HHHHHHHHhccccCcceEEEEEeehhhcCc-eecHHHHHHHHHHcC
Confidence            456666665432221      368999995 467778999998764

>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=81.75  E-value=0.22  Score=21.08  Aligned_cols=8  Identities=25%  Similarity=0.991  Sum_probs=4.4

Q ss_pred             ccccCCCC
Q psy12016         82 KYECDQCP   89 (111)
Q Consensus        82 ~~~C~~C~   89 (111)
                      .|.|+.|+
T Consensus        36 ~w~CP~C~   43 (52)
T d2dsxa1          36 DWACPVCG   43 (52)
T ss_dssp             TCBCTTTC
T ss_pred             CCCCcCCC
Confidence            35555555