Psyllid ID: psy12030

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MDMSVSSTGQQYNKIMPVCLYAMFVEKSTNTKMEFIAIRNSNVDKSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTRA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccccccccEEEEEEccccccccccccccccccccccEccccHHHHHHHccccccccccccccccEccccHHHHHHHHccccccccccccccccEccccHHHHcccccccccHccccEccccHHHHHHHHcccccccccccHccccEccccHHHHHHHHccccEEccHccccEccccHHHHHHHHcccccccccccHccccEccccHHHHHHHHccccccEEEccccccccc
Coil and Loop (DISEMBL)
mdmsvsstgqqynkimpVCLYAMFVEKSTNTKMEFIAIRnsnvdkslnTNVLnahgfniwpLVQQyskgfecqvcgkrykykrglhrhkqdecgqepkyqcpqckdsffSWSAFHKNLsgmfacdvcgkeykykrglyrhkkfecgqepkyqcphcphrakhkanlkthiapqlgvfacnvcgkgyryktglyrhkreecgqepkyqcphcphkakhkaNLKTHiaikhsdrilppqegrvwtra
Flexible Loop (DISEMBL)
mdmsvsstgqqynkimPVCLYAMFVEKSTNTKMEFIAIRNSNVDKSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKqdecgqepkyQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHiaikhsdrilppqegrvwtra
Low Complexity Region (SEG)
MDMSVSSTGQQYNKIMPVCLYAMFVEKSTNTKMEFIAIRNSNVDKSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTRA
Disordered region (IsUnstruct)
***********YNKIMPVCLYAMFVEKSTNTKMEFIAIRNSNVDKSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCP*******NLKTHIAI******************
Disordered Region (DISOPRED)
*DMSVSSTGQQYNKIMPVCLYAMFVEKSTNTKMEFIAIRNSNVDKSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWT**
Disordered Region (DISEMBL)
*********QQYNKIMPVCLYAMFVEKSTNTKMEFIAIRNSNVDKSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTRA
Disordered Region (DISPRO)
MDMSVSSTGQQYNKIMPVCLYAMFVEKSTNTKMEFIAIRNSNVDKSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMSVSSTGQQYNKIMPVCLYAMFVEKSTNTKMEFIAIRNSNVDKSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q9N003	741	Zinc finger protein 425 (	N/A	N/A	0.677	0.224	0.348	3e-19
Q6IV72	752	Zinc finger protein 425 O	yes	N/A	0.665	0.216	0.357	2e-18
Q9V5M3	878	Longitudinals lacking pro	yes	N/A	0.457	0.127	0.386	9e-18
Q8CJ78	1038	Zinc finger protein 628 O	yes	N/A	0.620	0.146	0.320	9e-17
Q4R6J4	378	Zinc finger protein 684 O	N/A	N/A	0.632	0.410	0.339	3e-16
Q6ZMW2	699	Zinc finger protein 782 O	no	N/A	0.677	0.237	0.329	4e-16
Q5T5D7	378	Zinc finger protein 684 O	no	N/A	0.632	0.410	0.339	5e-16
Q68DY1	528	Zinc finger protein 626 O	no	N/A	0.640	0.297	0.323	2e-15
Q06730	810	Zinc finger protein 33A O	no	N/A	0.661	0.2	0.325	4e-15
P08048	801	Zinc finger Y-chromosomal	no	N/A	0.669	0.204	0.289	1e-14

>sp|Q9N003|ZN425_MACFA Zinc finger protein 425 (Fragment) OS=Macaca fascicularis GN=ZNF425 PE=2 SV=2

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 12/178 (6%)

Query: 63  VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA---FHKNL- 118
           V    K F C  CG+ ++ +  L  H +   G+EP +QCP+C D  FSW A   FH+ + 
Sbjct: 508 VHNTEKPFSCAECGRSFRRRAHLTEHTRLHSGEEP-FQCPEC-DKSFSWKASMKFHQRMH 565

Query: 119 --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG- 175
                FAC  CGK Y ++  L  H +   G++P YQCP C    + K NLK+H+    G 
Sbjct: 566 RDEKPFACSECGKTYTHQSQLTEHLRLHSGEKP-YQCPECQKTFRLKGNLKSHLLQHSGQ 624

Query: 176 -VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
             F+C +CGK +  +  L  H R   G++P +QCP C      + +LK H+     +R
Sbjct: 625 KPFSCVMCGKSFTQQYRLTEHIRVHSGEKP-FQCPECDKSYCIRGSLKVHLYTHSGER 681

Acts as a transcriptional repressor.
Macaca fascicularis (taxid: 9541)

>sp|Q6IV72|ZN425_HUMAN Zinc finger protein 425 OS=Homo sapiens GN=ZNF425 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 91/176 (51%), Gaps = 13/176 (7%)

Query: 63  VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA---FHKNL- 118
           V    K F C  CG+ ++ +  L  H +   G+EP +QCP+C D  FSW A   FH+ + 
Sbjct: 519 VHTTEKPFSCAECGRSFRRRAHLTEHTRLHSGEEP-FQCPEC-DKSFSWKASMKFHQRMH 576

Query: 119 --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG- 175
                FAC  C K Y ++  L  H +   G++P YQCP C    + K NLK+H+    G 
Sbjct: 577 RDEKPFACGECDKTYTHQSQLTEHLRLHSGEKP-YQCPECEKTFRLKGNLKSHLLQHSGQ 635

Query: 176 -VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS 230
             F+C +CGK +  +  L  H R   G++P +QCP C      + +LK H+  KHS
Sbjct: 636 KPFSCVMCGKSFTQQYRLTEHIRVHSGEKP-FQCPECDKSYCIRGSLKVHL-YKHS 689

Acts as a transcriptional repressor.

Homo sapiens (taxid: 9606)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 90.5 bits (223), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAK----HKANLKTHIAPQLGVF 177
           +AC+VCGK YK K  L RHK +ECG EP  +CPHCPH+ K       N   H  P+    
Sbjct: 709 YACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCKCVLAQVVNFVRH-GPK-NQL 766

Query: 178 ACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP 236
            C  CG+ Y   + L  H+REEC    ++QC  C    K +++L  H  +  ++  L P
Sbjct: 767 LCQ-CGRYYNTLSRLMLHQREECQDFKRFQCDFCLKWFKRRSHLNRHKKLHDAELFLEP 824

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q8CJ78|ZN628_MOUSE Zinc finger protein 628 OS=Mus musculus GN=Znf628 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 10/162 (6%)

Query: 70  FECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF--FSWSAFHKNL-SGM--FAC 124
           ++C  C K +K    L  H++   G+ P YQCP C  +F   S    H+++ +G+  F C
Sbjct: 62  YKCPDCPKAFKGSSALLYHQRGHTGERP-YQCPDCPKAFKRSSLLQIHRSVHTGLRAFTC 120

Query: 125 DVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVC 182
             CG  +K+      H +   G+ P Y CP CP   K+ ++L+ H     G   + C +C
Sbjct: 121 GQCGLAFKWSSHYQYHLRQHTGERP-YPCPDCPKAFKNSSSLRRHRHVHTGERPYTCGIC 179

Query: 183 GKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
           GK +   T L +H+R   G+ P ++CP CP    H +NL  H
Sbjct: 180 GKSFTQSTNLRQHQRVHTGERP-FRCPLCPKTFTHSSNLLLH 220

Transcription activator. Binds DNA on GT-box consensus sequence 5'-TTGGTT-3'.

Mus musculus (taxid: 10090)

>sp|Q4R6J4|ZN684_MACFA Zinc finger protein 684 OS=Macaca fascicularis GN=ZNF684 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 70  FECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHK-----NLSGMFAC 124
           F C  CGK + +K  L  H++   G++P Y+C QC  +F   S+F++      L   F C
Sbjct: 215 FVCNDCGKAFMHKAQLVVHQRLHTGEKP-YECSQCGKTFTWNSSFNQHVKSHTLEKSFEC 273

Query: 125 DVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVC 182
           + CGK ++Y   LY+H +F  G++P YQC  C     + + L TH     G   + C  C
Sbjct: 274 EECGKTFRYSSSLYKHSRFHTGEKP-YQCIICGKAFGNTSVLVTHQRIHTGEKPYGCIEC 332

Query: 183 GKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
           GK +  K+ L RH+    G++P Y+C  C      K+NL  H  I
Sbjct: 333 GKAFIKKSHLLRHQITHTGEKP-YECNRCGKAFSQKSNLIVHQKI 376

May be involved in transcriptional regulation.

Macaca fascicularis (taxid: 9541)

>sp|Q6ZMW2|ZN782_HUMAN Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 10/176 (5%)

Query: 56  GFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFH 115
           G  I        K FEC  CGK + YK  L  H++   G++P ++C +C  SF   S   
Sbjct: 436 GLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKP-FECNECGKSFSHMSGLR 494

Query: 116 ---KNLSGM--FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI 170
              +  +G   + CD CGK +K K GL +H +   G++P Y+C  C      K+ L+ H 
Sbjct: 495 NHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKP-YKCNQCGKAFGQKSQLRGHH 553

Query: 171 APQLGV--FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
               G   + CN CG+ +  K+ L  H R   G++P YQC  C    + K+NL+ H
Sbjct: 554 RIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKP-YQCEECGKTFRQKSNLRGH 608

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5T5D7|ZN684_HUMAN Zinc finger protein 684 OS=Homo sapiens GN=ZNF684 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 70  FECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHK-----NLSGMFAC 124
           F C  CGK + +K  L  H++   G++P Y+C QC  +F   S+F++      L   F C
Sbjct: 215 FVCNDCGKAFMHKAQLVVHQRLHTGEKP-YECSQCGKTFTWNSSFNQHVKSHTLEKSFEC 273

Query: 125 DVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVC 182
             CGK ++Y   LY+H +F  G++P YQC  C     + + L TH     G   ++C  C
Sbjct: 274 KECGKTFRYSSSLYKHSRFHTGEKP-YQCIICGKAFGNTSVLVTHQRIHTGEKPYSCIEC 332

Query: 183 GKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
           GK +  K+ L RH+    G++P Y+C  C      K+NL  H  I
Sbjct: 333 GKAFIKKSHLLRHQITHTGEKP-YECNRCGKAFSQKSNLIVHQKI 376

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q68DY1|ZN626_HUMAN Zinc finger protein 626 OS=Homo sapiens GN=ZNF626 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 68  KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHK-----NLSGMF 122
           K ++C+ CGK +K+   L  HK++  G++P Y+C +C  +F S S   K          +
Sbjct: 227 KPYKCEECGKAFKHSSTLTTHKRNHTGEKP-YKCDKCGKAFMSSSTLSKHEIIHTEKKPY 285

Query: 123 ACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTH--IAPQLGVFACN 180
            C+ CGK +     L  HK    G++P Y+C  C    K+   L TH  I  +   + C 
Sbjct: 286 KCEECGKAFNRSSTLTTHKIIHTGEKP-YKCEECDKAFKYSYTLTTHKRIHTEDKPYKCE 344

Query: 181 VCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
            CGK ++Y + L  HKR   G++P Y+C  C    K  ++L TH  I
Sbjct: 345 ECGKAFKYSSTLTTHKRIHTGEKP-YKCEECGKAFKRSSDLTTHKII 390

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q06730|ZN33A_HUMAN Zinc finger protein 33A OS=Homo sapiens GN=ZNF33A PE=1 SV=3

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 10/172 (5%)

Query: 68  KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGM-----F 122
           K FEC  CGK +  K  L RH++   GQ+P +QC +C+ +F+  S   K+         F
Sbjct: 326 KHFECNECGKAFWEKSHLTRHQRVHTGQKP-FQCNECEKAFWDKSNLTKHQRSHTGEKPF 384

Query: 123 ACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACN 180
            C+ CGK + +K  L  H++   G++P YQC  C      K++L  H     G+  + C 
Sbjct: 385 ECNECGKAFSHKSALTLHQRTHTGEKP-YQCNACGKTFCQKSDLTKHQRTHTGLKPYECY 443

Query: 181 VCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
            CGK +R  + L  H+R   G++P ++C  C      K+NL  H  I   D+
Sbjct: 444 ECGKSFRVTSHLKVHQRTHTGEKP-FECLECGKSFSEKSNLTQHQRIHIGDK 494

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P08048|ZFY_HUMAN Zinc finger Y-chromosomal protein OS=Homo sapiens GN=ZFY PE=1 SV=3

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 33/197 (16%)

Query: 53  NAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQD--ECGQEPKYQCPQCKDSFFS 110
           + H   ++P          C +CGK++K +  L RH ++  E   + KY C  C  +   
Sbjct: 414 DGHPLTVYP----------CMICGKKFKSRGFLKRHMKNHPEHLAKKKYHCTDCDYTTNK 463

Query: 111 WSAFHKNLSG---------MFACDVCGKEYKYKRGLYRHKKF--ECGQEPKYQCPHCPHR 159
             + H +L              CD CGK + +   L+ HK    E G    ++C  C + 
Sbjct: 464 KISLHNHLESHKLTSKAEKAIECDECGKHFSHAGALFTHKMVHKEKGANKMHKCKFCEYE 523

Query: 160 AKHKANLKTHIAPQLGVFA------CNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPH 213
              +  L  H+   L V +      C  CGKG+R+ + L +H R   G++P YQC +C +
Sbjct: 524 TAEQGLLNRHL---LAVHSKNFPHICVECGKGFRHPSELRKHMRIHTGEKP-YQCQYCEY 579

Query: 214 KAKHKANLKTHIAIKHS 230
           ++   +NLKTHI  KHS
Sbjct: 580 RSADSSNLKTHIKTKHS 596

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
355748113	752	hypothetical protein EGM_13074 [Macaca f	0.677	0.220	0.348	7e-18
348534423	1649	PREDICTED: hypothetical protein LOC10069	0.726	0.107	0.306	8e-18
345491615	434	PREDICTED: GDNF-inducible zinc finger pr	0.722	0.407	0.304	8e-18
403276391	752	PREDICTED: zinc finger protein 425 [Saim	0.677	0.220	0.342	2e-17
97218967	741	RecName: Full=Zinc finger protein 425	0.677	0.224	0.348	2e-17
9651099	720	hypothetical protein [Macaca fasciculari	0.677	0.230	0.348	2e-17
402865299	721	PREDICTED: zinc finger protein 425, part	0.677	0.230	0.348	3e-17
350400512	182	PREDICTED: zinc finger and SCAN domain-c	0.514	0.692	0.335	3e-17
109068774	660	PREDICTED: zinc finger protein 425-like	0.677	0.251	0.348	3e-17
355561149	667	hypothetical protein EGK_14309 [Macaca m	0.677	0.248	0.348	4e-17

>gi|355748113|gb|EHH52610.1| hypothetical protein EGM_13074 [Macaca fascicularis]

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 12/178 (6%)

Query: 63  VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA---FHKNL- 118
           V    K F C  CG+ ++ +  L  H +   G+EP +QCP+C D  FSW A   FH+ + 
Sbjct: 519 VHNTEKPFSCAECGRSFRRRAHLTEHTRLHSGEEP-FQCPEC-DKSFSWKASMKFHQRMH 576

Query: 119 --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG- 175
                FAC  CGK Y ++  L  H++   G++P YQCP C    + K NLK+H+    G 
Sbjct: 577 RDEKPFACSECGKTYTHQSQLTEHQRLHSGEKP-YQCPECQKTFRLKGNLKSHLLQHSGQ 635

Query: 176 -VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
             F+C +CGK +  +  L  H R   G++P +QCP C      + +LK H+     +R
Sbjct: 636 KPFSCVMCGKSFTQQYRLTEHIRVHSGEKP-FQCPECDKSYCIRGSLKVHLYTHSGER 692

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348534423|ref|XP_003454701.1| PREDICTED: hypothetical protein LOC100697633 [Oreochromis niloticus]

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 11/189 (5%)

Query: 62   LVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL--- 118
            L     +   C+VCGKR+K    L+ HK+    +E  Y C  C  +F S S    ++   
Sbjct: 1462 LTHTVERPHSCEVCGKRFKCPHVLNSHKKIHTVRERSYLCHICCKTFMSNSVLSTHMKIH 1521

Query: 119  --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV 176
                   C VC K + YK  L  H +   G++P Y C  C    KHK +L  H+    G+
Sbjct: 1522 SNERPHICLVCKKAFVYKGSLKAHMRMHTGEKP-YSCSQCGRSFKHKCHLNDHVRSHAGI 1580

Query: 177  --FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRI- 233
              F C++CG+    +T L  H R   G +P YQC  C      +  LK+H+ I  + +  
Sbjct: 1581 KQFVCSICGRACSRQTQLKTHMRTHNGDKP-YQCDICKRSFSQRGTLKSHVKIHEAKKTD 1639

Query: 234  -LPPQEGRV 241
              PP+   V
Sbjct: 1640 SDPPENQTV 1648

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345491615|ref|XP_003426658.1| PREDICTED: GDNF-inducible zinc finger protein 1-like isoform 3 [Nasonia vitripennis]

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 30/207 (14%)

Query: 45  KSLNTNVLNAHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPK-YQCPQ 103
           KS NT V +A       ++      + C++C K YK     +RH    C    + ++C +
Sbjct: 229 KSSNTAVKSA-------IILTSGNCYTCKLCQKSYKRSFHAYRHLSRSCQISKRLFKCDK 281

Query: 104 CKDSFFSWSAFHKNLSGMFA----------------CDVCGKEYKYKRGLYRHKKFECGQ 147
           C  +F +  +  +++  +                  C  C K Y+ K GLYRHKK+ECG+
Sbjct: 282 CGRNFTAKYSLKRHMLLLHTGTGKLPRKKIIEEETICHKCHKRYRDKYGLYRHKKYECGK 341

Query: 148 EPKYQCPHCPHRAKHKANLKTHIA-----PQLGVFACNVCGKGYRYKTGLYRHKREECGQ 202
           EP++ C HC +R++ K NL  H+       ++   +C  C K Y+Y+  L RH   ECG+
Sbjct: 342 EPQFACAHCEYRSRQKINLVKHLENIHAESKMPRISCPKCDKSYKYEYSLKRHLLYECGK 401

Query: 203 EPKYQCPHCPHKAKHKANLKTHIAIKH 229
           +P   C  C  + KHK++L +H+  KH
Sbjct: 402 KP-IACDRCSFRTKHKSSLASHMQNKH 427

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403276391|ref|XP_003929883.1| PREDICTED: zinc finger protein 425 [Saimiri boliviensis boliviensis]

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 12/178 (6%)

Query: 63  VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA---FHKNL- 118
           V    K F C  CG+ ++ +  L  H +   G+EP +QCP+C D  FSW A   FH+ + 
Sbjct: 519 VHTTEKQFSCAECGRSFRRRSHLREHTRLHSGEEP-FQCPEC-DKSFSWKASMKFHQRVH 576

Query: 119 --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG- 175
                FAC  CGK Y ++  L  H +   G++P +QCP C    + K NLK+H+    G 
Sbjct: 577 RDEKPFACSECGKTYTHQSQLTEHLRLHSGEKP-FQCPECQKTFRLKGNLKSHLLQHSGQ 635

Query: 176 -VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
             F+C +CGK +  +  L  H R   G++P +QCP C      + +LK H+     +R
Sbjct: 636 KPFSCVMCGKSFTQQYRLTEHTRVHSGEKP-FQCPECDKSYCVRGSLKVHLYTHSGER 692

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|97218967|sp|Q9N003.2|ZN425_MACFA RecName: Full=Zinc finger protein 425

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 12/178 (6%)

Query: 63  VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA---FHKNL- 118
           V    K F C  CG+ ++ +  L  H +   G+EP +QCP+C D  FSW A   FH+ + 
Sbjct: 508 VHNTEKPFSCAECGRSFRRRAHLTEHTRLHSGEEP-FQCPEC-DKSFSWKASMKFHQRMH 565

Query: 119 --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG- 175
                FAC  CGK Y ++  L  H +   G++P YQCP C    + K NLK+H+    G 
Sbjct: 566 RDEKPFACSECGKTYTHQSQLTEHLRLHSGEKP-YQCPECQKTFRLKGNLKSHLLQHSGQ 624

Query: 176 -VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
             F+C +CGK +  +  L  H R   G++P +QCP C      + +LK H+     +R
Sbjct: 625 KPFSCVMCGKSFTQQYRLTEHIRVHSGEKP-FQCPECDKSYCIRGSLKVHLYTHSGER 681

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|9651099|dbj|BAB03562.1| hypothetical protein [Macaca fascicularis]

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 12/178 (6%)

Query: 63  VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA---FHKNL- 118
           V    K F C  CG+ ++ +  L  H +   G+EP +QCP+C D  FSW A   FH+ + 
Sbjct: 487 VHNTEKPFSCAECGRSFRRRAHLTEHTRLHSGEEP-FQCPEC-DKSFSWKASMKFHQRMH 544

Query: 119 --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG- 175
                FAC  CGK Y ++  L  H +   G++P YQCP C    + K NLK+H+    G 
Sbjct: 545 RDEKPFACSECGKTYTHQSQLTEHLRLHSGEKP-YQCPECQKTFRLKGNLKSHLLQHSGQ 603

Query: 176 -VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
             F+C +CGK +  +  L  H R   G++P +QCP C      + +LK H+     +R
Sbjct: 604 KPFSCVMCGKSFTQQYRLTEHIRVHSGEKP-FQCPECDKSYCIRGSLKVHLYTHSGER 660

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402865299|ref|XP_003896866.1| PREDICTED: zinc finger protein 425, partial [Papio anubis]

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 12/178 (6%)

Query: 63  VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA---FHKNL- 118
           V    K F C  CG+ ++ +  L  H +   G+EP +QCP+C D  FSW A   FH+ + 
Sbjct: 488 VHTTEKPFSCVECGRSFRRRAHLTEHTRLHSGEEP-FQCPEC-DKSFSWKASMKFHQRMH 545

Query: 119 --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG- 175
                FAC  CGK Y ++  L  H +   G++P YQCP C    + K NLK+H+    G 
Sbjct: 546 RDEKPFACSECGKTYTHQSQLTEHLRLHSGEKP-YQCPECQKTFRLKGNLKSHLLQHSGQ 604

Query: 176 -VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
             F+C +CGK +  +  L  H R   G++P +QCP C      + +LK H+     +R
Sbjct: 605 KPFSCVMCGKSFTQQYRLTEHIRVHSGEKP-FQCPECDKSYCIRGSLKVHLYTHSGER 661

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350400512|ref|XP_003485859.1| PREDICTED: zinc finger and SCAN domain-containing protein 2-like [Bombus impatiens]

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 38/164 (23%)

Query: 102 PQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAK 161
           P  KD    W A  K +   + C+ CGK Y+++  L RH + ECG+EP+++CP+C HR K
Sbjct: 17  PLIKDLATLWMA--KRVEFPYRCETCGKGYQHRATLVRHTRHECGKEPQFKCPYCAHRTK 74

Query: 162 HKANLKTHIAP------------------------------------QLGVFACNVCGKG 185
            + NL  HI                                      + G F C  C KG
Sbjct: 75  QRGNLYQHIRTNHPGKNVFSKPSWSGYRYQSRTVGHHKLESSSCLDKKPGCFRCPNCNKG 134

Query: 186 YRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKH 229
           YR+   +  H R+ECG++PK  CP+CPH+ K+K +L+ HI   H
Sbjct: 135 YRWLRNMKNHLRKECGKDPKECCPYCPHRTKYKGSLRKHILRIH 178

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|109068774|ref|XP_001098558.1| PREDICTED: zinc finger protein 425-like [Macaca mulatta]

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 12/178 (6%)

Query: 63  VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA---FHKNL- 118
           V    K F C  CG+ ++ +  L  H +   G+EP +QCP+C D  FSW A   FH+ + 
Sbjct: 427 VHNTEKPFSCAECGRSFRRRAHLTEHTRLHSGEEP-FQCPEC-DKSFSWKASMKFHQRMH 484

Query: 119 --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG- 175
                FAC  CGK Y ++  L  H +   G++P YQCP C    + K NLK+H+    G 
Sbjct: 485 RDEKPFACSECGKTYTHQSQLTEHLRLHSGEKP-YQCPECQKTFRLKGNLKSHLLQHSGQ 543

Query: 176 -VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
             F+C +CGK +  +  L  H R   G++P +QCP C      + +LK H+     +R
Sbjct: 544 KPFSCVMCGKSFTQQYRLTEHIRVHSGEKP-FQCPECDKSYCIRGSLKVHLYTHSGER 600

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355561149|gb|EHH17835.1| hypothetical protein EGK_14309 [Macaca mulatta]

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 12/178 (6%)

Query: 63  VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA---FHKNL- 118
           V    K F C  CG+ ++ +  L  H +   G+EP +QCP+C D  FSW A   FH+ + 
Sbjct: 434 VHNTEKPFSCAECGRSFRRRAHLTEHTRLHSGEEP-FQCPEC-DKSFSWKASMKFHQRMH 491

Query: 119 --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG- 175
                FAC  CGK Y ++  L  H +   G++P YQCP C    + K NLK+H+    G 
Sbjct: 492 RDEKPFACSECGKTYTHQSQLTEHLRLHSGEKP-YQCPECQKTFRLKGNLKSHLLQHSGQ 550

Query: 176 -VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
             F+C +CGK +  +  L  H R   G++P +QCP C      + +LK H+     +R
Sbjct: 551 KPFSCVMCGKSFTQQYRLTEHIRVHSGEKP-FQCPECDKSYCIRGSLKVHLYTHSGER 607

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
UNIPROTKB|Q9N003	741	ZNF425 "Zinc finger protein 42	0.677	0.224	0.348	2.5e-25
UNIPROTKB|Q6IV72	752	ZNF425 "Zinc finger protein 42	0.665	0.216	0.357	7e-25
ZFIN|ZDB-GENE-080219-37	339	zgc:171604 "zgc:171604" [Danio	0.665	0.480	0.335	6.8e-24
ZFIN|ZDB-GENE-120214-29	518	si:ch73-367f21.5 "si:ch73-367f	0.902	0.426	0.280	2.3e-23
ZFIN|ZDB-GENE-120214-31	488	si:ch73-367f21.6 "si:ch73-367f	0.693	0.348	0.331	3e-23
UNIPROTKB|J9NV74	319	ZNF628 "Uncharacterized protei	0.669	0.514	0.325	7.8e-23
ZFIN|ZDB-GENE-050522-337	381	zgc:110238 "zgc:110238" [Danio	0.636	0.409	0.331	1e-22
UNIPROTKB|F1MR89	382	ZNF684 "Uncharacterized protei	0.644	0.413	0.341	2.6e-22
UNIPROTKB|F1MYX1	598	ZNF782 "Uncharacterized protei	0.620	0.254	0.327	2.7e-22
UNIPROTKB|G3V1K9	567	ZNF782 "Zinc finger protein 78	0.677	0.292	0.335	3e-22

UNIPROTKB|Q9N003 ZNF425 "Zinc finger protein 425" [Macaca fascicularis (taxid:9541)]

 Score = 297 (109.6 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 62/178 (34%), Positives = 91/178 (51%)

Query:    63 VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA---FHKNL- 118
             V    K F C  CG+ ++ +  L  H +   G+EP +QCP+C D  FSW A   FH+ + 
Sbjct:   508 VHNTEKPFSCAECGRSFRRRAHLTEHTRLHSGEEP-FQCPEC-DKSFSWKASMKFHQRMH 565

Query:   119 --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV 176
                  FAC  CGK Y ++  L  H +   G++P YQCP C    + K NLK+H+    G 
Sbjct:   566 RDEKPFACSECGKTYTHQSQLTEHLRLHSGEKP-YQCPECQKTFRLKGNLKSHLLQHSGQ 624

Query:   177 --FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
               F+C +CGK +  +  L  H R   G++P +QCP C      + +LK H+     +R
Sbjct:   625 KPFSCVMCGKSFTQQYRLTEHIRVHSGEKP-FQCPECDKSYCIRGSLKVHLYTHSGER 681

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|Q6IV72 ZNF425 "Zinc finger protein 425" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 7.0e-25, P = 7.0e-25
 Identities = 63/176 (35%), Positives = 91/176 (51%)

Query:    63 VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA---FHKNL- 118
             V    K F C  CG+ ++ +  L  H +   G+EP +QCP+C D  FSW A   FH+ + 
Sbjct:   519 VHTTEKPFSCAECGRSFRRRAHLTEHTRLHSGEEP-FQCPEC-DKSFSWKASMKFHQRMH 576

Query:   119 --SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV 176
                  FAC  C K Y ++  L  H +   G++P YQCP C    + K NLK+H+    G 
Sbjct:   577 RDEKPFACGECDKTYTHQSQLTEHLRLHSGEKP-YQCPECEKTFRLKGNLKSHLLQHSGQ 635

Query:   177 --FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS 230
               F+C +CGK +  +  L  H R   G++P +QCP C      + +LK H+  KHS
Sbjct:   636 KPFSCVMCGKSFTQQYRLTEHIRVHSGEKP-FQCPECDKSYCIRGSLKVHL-YKHS 689

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-080219-37 zgc:171604 "zgc:171604" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 58/173 (33%), Positives = 85/173 (49%)

Query:    67 SKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL---SGM-- 121
             +K F C  CGK +  K+ L  H +   G E  + C QC  SF + S F  ++   +G   
Sbjct:    84 TKPFPCHQCGKHFSKKQNLKFHMRIHTG-EKLFTCDQCGKSFTAKSGFEIHMRTHTGEKP 142

Query:   122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FAC 179
             F+C  CGK + +K+ L  HK    G++P + C HC  R     NLK H     G   + C
Sbjct:   143 FSCTECGKSFSHKQNLEIHKTIHTGEKP-FACQHCGKRFGQMGNLKVHFRVHFGERPYTC 201

Query:   180 NVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
               CGK + +K  L  HK+   G++P + C HC  +    +NLK HI +   +R
Sbjct:   202 QQCGKSFSHKHNLEIHKKIHTGEKP-FACQHCGKRFSQMSNLKVHIRVHFGER 253

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-120214-29 si:ch73-367f21.5 "si:ch73-367f21.5" [Danio rerio (taxid:7955)]

 Score = 275 (101.9 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 65/232 (28%), Positives = 105/232 (45%)

Query:    17 PVCLYAMFVEKSTNTKMEFIAIRNSNVDKSLNTNVLNAHGFNIWPLVQQYSKGFECQVCG 76
             P C     V++S  T ++        +      N    H       +    K + CQVCG
Sbjct:    93 PECDKCFTVKQSLETHLKIHTGEKPFICPYCGKNFRIKHSLEGHMRIHTGEKPYPCQVCG 152

Query:    77 KRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL---SGM--FACDVCGKEY 131
             K ++ K+ L +H     G++P Y CP+C  SF   +    ++   +G   + C  CGK +
Sbjct:   153 KSFREKQSLEKHLTIHTGEKP-YSCPECGKSFRVKNCLENHIKIHTGEKPYTCQECGKSF 211

Query:   132 KYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYK 189
               K+ L RH +   G++P + C HC    +   +LK H+    G   F+C  CGK +   
Sbjct:   212 TEKQNLKRHMRIHTGEKP-FTCSHCGKSFRVSKDLKIHVRIHTGEKPFSCQQCGKSFSEN 270

Query:   190 TGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSD-RILPPQEGR 240
               L  H R   G++P + C HC  + + K NL++HI +   + R   PQ G+
Sbjct:   271 KKLTSHMRIHTGEKP-FVCSHCGKRFRGKQNLESHIRLHTGEKRYTCPQCGK 321

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-120214-31 si:ch73-367f21.6 "si:ch73-367f21.6" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 3.0e-23, P = 3.0e-23
 Identities = 60/181 (33%), Positives = 92/181 (50%)

Query:    68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF---FSWSAFHKNLSGM--F 122
             K + CQ CGKR+  K+ L +H     G++P Y CP+C  SF   F      K  +G   +
Sbjct:   145 KPYTCQECGKRFTEKQTLDKHLTIHTGEKP-YSCPECGKSFRVKFCLENHIKIHTGEKPY 203

Query:   123 ACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACN 180
              C  CGK +  K+ L RH +   G++P + CP C    + K +LK+H+    G   F+C 
Sbjct:   204 TCQECGKSFTEKQNLERHMRIHTGEKP-FACPECGRSFRVKQDLKSHVRIHTGEKPFSCQ 262

Query:   181 VCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSD-RILPPQEG 239
              CGK +     L  H R   G++P + C HC  + + K NL++H+ +   + R   PQ G
Sbjct:   263 QCGKSFSENKTLESHMRIHTGEKP-FVCSHCGRRFRGKQNLESHMRLHTGEKRYTCPQCG 321

Query:   240 R 240
             +
Sbjct:   322 K 322

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|J9NV74 ZNF628 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 59/181 (32%), Positives = 92/181 (50%)

Query:    70 FECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSA--FH-KNLSGM--FAC 124
             +EC  CGK +++   L  H++   G+ P Y+CP C  +F   SA  +H +  +G   + C
Sbjct:    29 YECGECGKSFRWSSRLLHHQRTHTGERP-YKCPDCPKAFKGSSALLYHQRGHTGERPYQC 87

Query:   125 -DVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNV 181
              D CG  +K+      H +   G+ P Y CP CP   K+ ++L+ H     G   + C+V
Sbjct:    88 PDCCGLAFKWSSHYQYHLRQHTGERP-YPCPDCPKAFKNSSSLRRHRHVHTGERPYTCSV 146

Query:   182 CGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANL----KTHIAIKHSDRILPPQ 237
             CGK +   T L +H+R   G+ P ++CP CP    H +NL    +TH A   +    PPQ
Sbjct:   147 CGKSFTQSTNLRQHQRVHTGERP-FRCPICPKTFTHSSNLLLHQRTHSAAASAPA--PPQ 203

Query:   238 E 238
             +
Sbjct:   204 D 204

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-050522-337 zgc:110238 "zgc:110238" [Danio rerio (taxid:7955)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 55/166 (33%), Positives = 76/166 (45%)

Query:    68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLS-----GMF 122
             K F C  CGKR+   + L  H     G+ P Y C QC+ SF    +  K+L        F
Sbjct:   158 KPFPCNQCGKRFNQLQALQSHFTIHSGERP-YACTQCEKSFRQRPSLEKHLKVHSREKPF 216

Query:   123 ACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACN 180
              C  CG  +  K  L  H +   G++P + CPHC     H++NL  H+    G   F C 
Sbjct:   217 TCSQCGNGFTQKERLQNHMRIHTGEKP-FACPHCEKTFAHRSNLYFHVRTHSGEKPFVCT 275

Query:   181 VCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIA 226
              CGK +R K  L  H R   G++P + C  C      + NLK H++
Sbjct:   276 HCGKSFRCKNSLVGHMRTHTGEKP-FACDQCGKSFSREFNLKCHMS 320

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1MR89 ZNF684 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 58/170 (34%), Positives = 86/170 (50%)

Query:    63 VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSW-SAFHKN---- 117
             +    + F C  CGK + +K  L  H++   G++P Y+C QC  SF +W S+F+++    
Sbjct:   212 IHNRERPFVCSDCGKAFTHKAQLVVHQRLHTGEKP-YECSQCGKSF-TWNSSFNQHMKSH 269

Query:   118 -LSGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV 176
              L   F C  CGK ++Y   LY+H KF  G++P YQC  C     + + L TH     G 
Sbjct:   270 TLENSFECKECGKTFRYSSSLYKHSKFHTGEKP-YQCIVCGKAFGNSSVLVTHQRIHTGE 328

Query:   177 --FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
               + C  CGK +  K+ L RH+    G+ P Y+C  C      K+NL  H
Sbjct:   329 KPYGCIKCGKAFIKKSHLLRHQITHTGERP-YECSKCGKPFSQKSNLIVH 377

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MYX1 ZNF782 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 267 (99.0 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 53/162 (32%), Positives = 85/162 (52%)

Query:    70 FECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAF---HKNLSGM--FAC 124
             ++C  CGK +K K GL +H +   G++P Y+C QC+ +F   S     H+  +G   + C
Sbjct:   402 YKCDECGKAFKLKSGLRKHHRTHTGEKP-YKCNQCEKAFGQKSQLRGHHRIHTGEKPYTC 460

Query:   125 DVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVC 182
             + CG+ +  K  L  H +   G++P Y+C  C    + K+NL+ H     G   + CN C
Sbjct:   461 NHCGEAFSQKSNLRVHHRTHTGEKP-YKCDECGKTFRQKSNLRGHQRTHTGEKPYGCNEC 519

Query:   183 GKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
              K +  K+ L +H+R   G++P Y C HC      K+NL+ H
Sbjct:   520 AKSFSEKSVLRKHQRTHTGEKP-YNCNHCGEAFSQKSNLRVH 560

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3V1K9 ZNF782 "Zinc finger protein 782" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 59/176 (33%), Positives = 87/176 (49%)

Query:    56 GFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAF- 114
             G  I        K FEC  CGK + YK  L  H++   G++P ++C +C  SF   S   
Sbjct:   304 GLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKP-FECNECGKSFSHMSGLR 362

Query:   115 -HKNL-SGM--FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI 170
              H+   +G   + CD CGK +K K GL +H +   G++P Y+C  C      K+ L+ H 
Sbjct:   363 NHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKP-YKCNQCGKAFGQKSQLRGHH 421

Query:   171 APQLGV--FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
                 G   + CN CG+ +  K+ L  H R   G++P YQC  C    + K+NL+ H
Sbjct:   422 RIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKP-YQCEECGKTFRQKSNLRGH 476

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	245
COG5189	423	COG5189, SFP1, Putative transcriptional repressor	0.004

>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

 Score = 37.8 bits (87), Expect = 0.004
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 68  KGFECQV--CGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACD 125
           K ++C V  C K+YK + GL  H      Q  K       +    +SA  K     + C+
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYHML-HGHQNQKLHENPSPEKMNIFSAKDKP----YRCE 402

Query: 126 VCGKEYKYKRGLYRHKK 142
           VC K YK   GL  H+K
Sbjct: 403 VCDKRYKNLNGLKYHRK 419

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
KOG2462|consensus	279		99.97
KOG2462|consensus	279		99.95
KOG1074|consensus	958		99.94
KOG3623|consensus	1007		99.92
KOG3608|consensus	467		99.91
KOG3608|consensus	467		99.89
KOG1074|consensus	958		99.84
KOG3576|consensus	267		99.72
KOG3576|consensus	267		99.69
KOG3623|consensus	1007		99.64
PLN03086	567	PRLI-interacting factor K; Provisional	99.46
PLN03086	567	PRLI-interacting factor K; Provisional	99.33
PHA00733	128	hypothetical protein	99.26
PHA00733	128	hypothetical protein	99.15
PHA02768	55	hypothetical protein; Provisional	99.1
PHA02768	55	hypothetical protein; Provisional	99.03
KOG3993|consensus	500		98.91
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.87
PHA00616	44	hypothetical protein	98.86
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.81
KOG3993|consensus	500		98.79
PHA00732	79	hypothetical protein	98.57
PHA00616	44	hypothetical protein	98.52
PHA00732	79	hypothetical protein	98.52
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.46
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.16
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.04
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.03
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.01
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.97
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.95
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.84
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.81
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.77
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.59
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.57
KOG2231|consensus	669		97.42
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.41
smart00355	26	ZnF_C2H2 zinc finger.	97.35
PRK04860	160	hypothetical protein; Provisional	97.27
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.23
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.12
smart00355	26	ZnF_C2H2 zinc finger.	97.03
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.98
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.75
KOG2231|consensus	669		96.72
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.69
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.67
PRK04860	160	hypothetical protein; Provisional	96.6
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.53
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.26
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.5
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.46
KOG1146|consensus	1406		95.44
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	95.35
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.73
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.51
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.34
KOG2482|consensus	423		94.1
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.86
COG5048	467	FOG: Zn-finger [General function prediction only]	93.76
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	93.69
KOG1146|consensus	1406		93.2
KOG2785|consensus	390		92.99
COG4049	65	Uncharacterized protein containing archaeal-type C	92.8
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	92.73
COG5048	467	FOG: Zn-finger [General function prediction only]	92.72
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	92.59
KOG2893|consensus	341		92.35
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	91.02
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	91.01
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	90.9
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	90.74
COG4049	65	Uncharacterized protein containing archaeal-type C	90.74
KOG2893|consensus	341		90.57
KOG4173|consensus	253		90.52
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	90.3
PHA00626	59	hypothetical protein	90.13
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	90.06
COG1592	166	Rubrerythrin [Energy production and conversion]	89.16
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	89.14
smart00531	147	TFIIE Transcription initiation factor IIE.	88.37
KOG2482|consensus	423		88.12
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	87.85
KOG2186|consensus	276		87.71
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	87.26
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	87.25
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	86.91
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	86.23
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.2
KOG2186|consensus	276		85.87
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	85.86
COG5151	421	SSL1 RNA polymerase II transcription initiation/nu	85.59
KOG4173|consensus	253		85.29
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	85.19
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	84.35
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	84.23
PRK06266	178	transcription initiation factor E subunit alpha; V	84.19
COG1592	166	Rubrerythrin [Energy production and conversion]	83.57
KOG2807|consensus	378		83.04
COG1198	730	PriA Primosomal protein N' (replication factor Y)	82.74
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	82.09
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	82.03
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	81.58
PRK09678	72	DNA-binding transcriptional regulator; Provisional	81.56
smart00531	147	TFIIE Transcription initiation factor IIE.	81.52
PRK04023	1121	DNA polymerase II large subunit; Validated	80.03

>KOG2462|consensus

Probab=99.97  E-value=4.7e-32  Score=204.48  Aligned_cols=124  Identities=25%  Similarity=0.463  Sum_probs=117.6

Q ss_pred             CccccCcCCCccCchhHHHhHHhhhcC--CCCCccCCCCCCcCCChHHHHhhhcCCCCceeCCCCCCccCChhHHHHHHh
Q psy12030        120 GMFACDVCGKEYKYKRGLYRHKKFECG--QEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKR  197 (245)
Q Consensus       120 ~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~  197 (245)
                      ..|+|..||+.+.+..+|.+|+++|..  ..+.+.|++|++.|.+-..|+.|+++|+-+.+|.+||+.|....-|+.|+|
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiR  208 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIR  208 (279)
T ss_pred             CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccc
Confidence            469999999999999999999999854  267899999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCCcccc
Q psy12030        198 EECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTR  244 (245)
Q Consensus       198 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~  244 (245)
                      +|+| ||||.|+.|++.|+++++|+.||++|.+.|+|.|..|+|.|-
T Consensus       209 THTG-EKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFs  254 (279)
T KOG2462|consen  209 THTG-EKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFA  254 (279)
T ss_pred             cccC-CCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHH
Confidence            9999 999999999999999999999999999999999999999983

>KOG2462|consensus

Probab=99.95  E-value=6e-29  Score=187.70  Aligned_cols=136  Identities=29%  Similarity=0.544  Sum_probs=120.9

Q ss_pred             CCceecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHHHhHHhhhcC
Q psy12030         67 SKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECG  146 (245)
Q Consensus        67 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  146 (245)
                      ...|.|..||+.+.+.+.|.+|.++|...+.                     .+.+.|.+||++|.+...|..|+++|  
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s---------------------~ka~~C~~C~K~YvSmpALkMHirTH--  184 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDS---------------------KKAFSCKYCGKVYVSMPALKMHIRTH--  184 (279)
T ss_pred             CCceeccccccccccccccchhhcccccccc---------------------cccccCCCCCceeeehHHHhhHhhcc--
Confidence            3458999999999999999999988865322                     23478999999999999999999999  


Q ss_pred             CCCCccCCCCCCcCCChHHHHhhhcCCCCc--eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHh
Q psy12030        147 QEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH  224 (245)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H  224 (245)
                       .-+++|.+|||.|...+.|+-|+++|+|+  |.|..|+++|..+++|+.|+++|.+ .|+|+|..|+|.|+..+.|.+|
T Consensus       185 -~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~-~K~~qC~~C~KsFsl~SyLnKH  262 (279)
T KOG2462|consen  185 -TLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSD-VKKHQCPRCGKSFALKSYLNKH  262 (279)
T ss_pred             -CCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcC-CccccCcchhhHHHHHHHHHHh
Confidence             45799999999999999999999999985  9999999999999999999999988 8899999999999999999999


Q ss_pred             Hhh
Q psy12030        225 IAI  227 (245)
Q Consensus       225 ~~~  227 (245)
                      ...
T Consensus       263 ~ES  265 (279)
T KOG2462|consen  263 SES  265 (279)
T ss_pred             hhh
Confidence            863

>KOG1074|consensus

Probab=99.94  E-value=1e-27  Score=203.80  Aligned_cols=79  Identities=27%  Similarity=0.516  Sum_probs=73.9

Q ss_pred             cccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCCc------eeCC---CCCCccCChhHH
Q psy12030        122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV------FACN---VCGKGYRYKTGL  192 (245)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~------~~C~---~C~~~f~~~~~l  192 (245)
                      ..|.+|.+++.-...|+.|+|+|+| |+||+|.+||+.|.++.+|+.|+..|...      +.|+   +|-+.|.+...|
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtG-ERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~l  684 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTG-ERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTL  684 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccC-cCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccc
Confidence            3499999999999999999999999 99999999999999999999999988752      8999   999999999999


Q ss_pred             HHHHhHHhC
Q psy12030        193 YRHKREECG  201 (245)
Q Consensus       193 ~~H~~~h~~  201 (245)
                      ..|+++|.+
T Consensus       685 pQhIriH~~  693 (958)
T KOG1074|consen  685 PQHIRIHLG  693 (958)
T ss_pred             cceEEeecC
Confidence            999999874

>KOG3623|consensus

Probab=99.92  E-value=1.6e-26  Score=193.75  Aligned_cols=100  Identities=28%  Similarity=0.711  Sum_probs=92.0

Q ss_pred             eecccccccccChhHHhcchhc-ccCCCCCccCCCCcccccChHHHHHhcC------------------CccccCcCCCc
Q psy12030         70 FECQVCGKRYKYKRGLHRHKQD-ECGQEPKYQCPQCKDSFFSWSAFHKNLS------------------GMFACDVCGKE  130 (245)
Q Consensus        70 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~C~~C~~~f~~~~~l~~h~~------------------~~~~C~~C~~~  130 (245)
                      .+|++|.+.+....+|+.|++- |-.++..|.|.+|.++|..+..|.+|+.                  +.|+|.+||+.
T Consensus       211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKA  290 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKA  290 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchh
Confidence            6899999999999999999875 4445778999999999999999988872                  36999999999


Q ss_pred             cCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhh
Q psy12030        131 YKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI  170 (245)
Q Consensus       131 f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~  170 (245)
                      |..+..|..|+|+|.| ++||.|+.|+|.|.....+..|+
T Consensus       291 FKfKHHLKEHlRIHSG-EKPfeCpnCkKRFSHSGSySSHm  329 (1007)
T KOG3623|consen  291 FKFKHHLKEHLRIHSG-EKPFECPNCKKRFSHSGSYSSHM  329 (1007)
T ss_pred             hhhHHHHHhhheeecC-CCCcCCcccccccccCCcccccc
Confidence            9999999999999999 99999999999999999999996

>KOG3608|consensus

Probab=99.91  E-value=1.2e-25  Score=174.50  Aligned_cols=224  Identities=18%  Similarity=0.344  Sum_probs=185.7

Q ss_pred             cccccccccccccceeeeeecccCcceeeeecc------CCCCCC---------cccccccccCCCCCccccccCCCcee
Q psy12030          7 STGQQYNKIMPVCLYAMFVEKSTNTKMEFIAIR------NSNVDK---------SLNTNVLNAHGFNIWPLVQQYSKGFE   71 (245)
Q Consensus         7 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (245)
                      ..++.+.+.=..|+..|.+.....+|......-      ....++         .+...+.+...|+.|.+.|+++|...
T Consensus       130 ~~g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvA  209 (467)
T KOG3608|consen  130 ALGQNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVA  209 (467)
T ss_pred             cchhhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEe
Confidence            445666666677888888766666665532221      111111         24444666778889999999999999


Q ss_pred             cccccccccChhHHhcchhcccC-CCCCccCCCCcccccChHHHHHhcCC---ccccCcCCCccCchhHHHhHHhhhcCC
Q psy12030         72 CQVCGKRYKYKRGLHRHKQDECG-QEPKYQCPQCKDSFFSWSAFHKNLSG---MFACDVCGKEYKYKRGLYRHKKFECGQ  147 (245)
Q Consensus        72 C~~C~~~f~~~~~l~~H~~~h~~-~~~~~~C~~C~~~f~~~~~l~~h~~~---~~~C~~C~~~f~~~~~l~~H~~~h~~~  147 (245)
                      |+.||..|.++..|..|++..+. +..+|.|..|.+.|.....|..|+.+   -|+|+.|+.+....++|..|++..+..
T Consensus       210 Cp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~  289 (467)
T KOG3608|consen  210 CPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSK  289 (467)
T ss_pred             cchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhcc
Confidence            99999999999999999886543 25689999999999999999999854   699999999999999999999988888


Q ss_pred             CCCccCCCCCCcCCChHHHHhhhcCCCCc-eeCCC--CCCccCChhHHHHHHhHHhC--CCCCcccCCCcccCCChHHHH
Q psy12030        148 EPKYQCPHCPHRAKHKANLKTHIAPQLGV-FACNV--CGKGYRYKTGLYRHKREECG--QEPKYQCPHCPHKAKHKANLK  222 (245)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~C~~--C~~~f~~~~~l~~H~~~h~~--~~~~~~C~~C~~~f~~~~~l~  222 (245)
                      ++||+|+.|.+.|.+.+.|..|+..|..+ |.|+.  |...|.+...+.+|++.++.  ++.+|.|-.|++.|++..+|.
T Consensus       290 dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~  369 (467)
T KOG3608|consen  290 DKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLS  369 (467)
T ss_pred             CCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHH
Confidence            99999999999999999999999999987 99988  99999999999999998883  356799999999999999999


Q ss_pred             HhHhhhCC
Q psy12030        223 THIAIKHS  230 (245)
Q Consensus       223 ~H~~~~~~  230 (245)
                      .|++..|+
T Consensus       370 ~HL~kkH~  377 (467)
T KOG3608|consen  370 AHLMKKHG  377 (467)
T ss_pred             HHHHHhhc
Confidence            99988876

>KOG3608|consensus

Probab=99.89  E-value=1.9e-24  Score=167.78  Aligned_cols=170  Identities=22%  Similarity=0.446  Sum_probs=153.7

Q ss_pred             eeccc--ccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcC-------CccccCcCCCccCchhHHHhH
Q psy12030         70 FECQV--CGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLS-------GMFACDVCGKEYKYKRGLYRH  140 (245)
Q Consensus        70 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~-------~~~~C~~C~~~f~~~~~l~~H  140 (245)
                      +.|.+  |-+.|.++..|.+|++.|.+ ++..-|+.||..|..+..|-.|++       .+|.|..|.+.|.++..|..|
T Consensus       178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs~-eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~H  256 (467)
T KOG3608|consen  178 TMCNWAMCTKHMGNKYRLREHIRTHSN-EKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSH  256 (467)
T ss_pred             eeccchhhhhhhccHHHHHHHHHhcCC-CeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHH
Confidence            55654  99999999999999999988 999999999999999999988873       489999999999999999999


Q ss_pred             HhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCC---CceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCC--CcccC
Q psy12030        141 KKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQL---GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH--CPHKA  215 (245)
Q Consensus       141 ~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~---~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f  215 (245)
                      +..|   ...|+|+.|.......+.|.+|++..+   +||+|+.|.+.|.+.++|.+|..+| + +..|+|..  |..+|
T Consensus       257 v~rH---vn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~H-S-~~~y~C~h~~C~~s~  331 (467)
T KOG3608|consen  257 VVRH---VNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVH-S-KTVYQCEHPDCHYSV  331 (467)
T ss_pred             HHHh---hhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhc-c-ccceecCCCCCcHHH
Confidence            9999   567999999999999999999987533   4699999999999999999999987 4 78899988  99999


Q ss_pred             CChHHHHHhHhhhC-CCC--CCCCCCCCccccC
Q psy12030        216 KHKANLKTHIAIKH-SDR--ILPPQEGRVWTRA  245 (245)
Q Consensus       216 ~~~~~l~~H~~~~~-~~~--~~~C~~C~~~f~~  245 (245)
                      ....+|++|++.+| |..  +|.|-.|.+-|++
T Consensus       332 r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~  364 (467)
T KOG3608|consen  332 RTYTQMRRHFLEVHEGNNPILYACHCCDRFFTS  364 (467)
T ss_pred             HHHHHHHHHHHHhccCCCCCceeeecchhhhcc
Confidence            99999999999888 555  4999999998864

>KOG1074|consensus

Probab=99.84  E-value=7.2e-22  Score=168.49  Aligned_cols=59  Identities=27%  Similarity=0.505  Sum_probs=53.9

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP  236 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  236 (245)
                      ..|.+||+.|...+.|+.|+++|++ +|||.|.+|++.|..+.+|+.||.+|+...++.-
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg-~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~sr  938 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTG-PKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSR  938 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCC-CCCccchhhhhhhhhhhhhhhhhccccccCCCcc
Confidence            4599999999999999999999999 9999999999999999999999999998776543

>KOG3576|consensus

Probab=99.72  E-value=2e-18  Score=124.75  Aligned_cols=110  Identities=26%  Similarity=0.594  Sum_probs=89.1

Q ss_pred             CCceecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHHHhHHhhhcC
Q psy12030         67 SKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECG  146 (245)
Q Consensus        67 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  146 (245)
                      ...|.|.+|++.|.-+..|.+|++-|....+                        |.|..||+.|.....|.+|+++|+|
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr------------------------~lct~cgkgfndtfdlkrh~rthtg  170 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKR------------------------HLCTFCGKGFNDTFDLKRHTRTHTG  170 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHH------------------------HHHhhccCcccchhhhhhhhccccC
Confidence            4458899999999888888888888866222                        7788888888999999999999999


Q ss_pred             CCCCccCCCCCCcCCChHHHHhhhcCCCC-------------ceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        147 QEPKYQCPHCPHRAKHKANLKTHIAPQLG-------------VFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-------------~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                       .+||+|..|++.|..+..|..|++.-++             .|.|+.||.+-.....+..|+..|+.
T Consensus       171 -vrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  171 -VRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             -ccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence             8899999999999999999998754333             17788888887777788888887766

>KOG3576|consensus

Probab=99.69  E-value=7.2e-18  Score=121.93  Aligned_cols=112  Identities=25%  Similarity=0.538  Sum_probs=102.2

Q ss_pred             ccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhH
Q psy12030        121 MFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKRE  198 (245)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~  198 (245)
                      .|.|..|++.|.-...|.+|++-|.. .+.+.|..||+.|.....|++|+++|+|  ||+|..|+++|+..-.|..|.+.
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch~~-vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~k  195 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCHSD-VKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKK  195 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhccH-HHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHH
Confidence            58999999999999999999999987 8889999999999999999999999998  59999999999999999999988


Q ss_pred             HhC----------CCCCcccCCCcccCCChHHHHHhHhhhCCCCC
Q psy12030        199 ECG----------QEPKYQCPHCPHKAKHKANLKTHIAIKHSDRI  233 (245)
Q Consensus       199 h~~----------~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  233 (245)
                      -||          .++.|.|..||.+-.....+..|++.||..-|
T Consensus       196 vhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  196 VHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             HcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            776          26779999999999999999999999987543

>KOG3623|consensus

Probab=99.64  E-value=4.2e-17  Score=137.78  Aligned_cols=105  Identities=28%  Similarity=0.676  Sum_probs=95.0

Q ss_pred             cccCcCCCccCchhHHHhHHhhhc-CCCCCccCCCCCCcCCChHHHHhhhcCCCC---------------ceeCCCCCCc
Q psy12030        122 FACDVCGKEYKYKRGLYRHKKFEC-GQEPKYQCPHCPHRAKHKANLKTHIAPQLG---------------VFACNVCGKG  185 (245)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---------------~~~C~~C~~~  185 (245)
                      .+|++|++.+.....|..|++..+ ..+..|.|..|.++|.++..|.+|+..|..               .|+|.+||++
T Consensus       211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKA  290 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKA  290 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchh
Confidence            579999999999999999987554 346679999999999999999999977653               1999999999


Q ss_pred             cCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhh
Q psy12030        186 YRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI  227 (245)
Q Consensus       186 f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~  227 (245)
                      |+.+..|..|+|+|.| ||||.|+.|+|+|+.+.++..||-.
T Consensus       291 FKfKHHLKEHlRIHSG-EKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  291 FKFKHHLKEHLRIHSG-EKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             hhhHHHHHhhheeecC-CCCcCCcccccccccCCcccccccc
Confidence            9999999999999999 9999999999999999999999864

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.46  E-value=1.5e-13  Score=116.56  Aligned_cols=129  Identities=17%  Similarity=0.356  Sum_probs=91.7

Q ss_pred             ccCCCCcccccChHHHHHhc----CCccccCc--CCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcC
Q psy12030         99 YQCPQCKDSFFSWSAFHKNL----SGMFACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAP  172 (245)
Q Consensus        99 ~~C~~C~~~f~~~~~l~~h~----~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~  172 (245)
                      ..|+.|....... .|..|.    ...-.|+.  |+..|.... +          ++.+.|+.|++.|. ...|..|+..
T Consensus       408 V~C~NC~~~i~l~-~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~e-l----------~~H~~C~~Cgk~f~-~s~LekH~~~  474 (567)
T PLN03086        408 VECRNCKHYIPSR-SIALHEAYCSRHNVVCPHDGCGIVLRVEE-A----------KNHVHCEKCGQAFQ-QGEMEKHMKV  474 (567)
T ss_pred             EECCCCCCccchh-HHHHHHhhCCCcceeCCcccccceeeccc-c----------ccCccCCCCCCccc-hHHHHHHHHh
Confidence            4677777665433 333444    23445764  887773222 2          34467888888885 5778888888


Q ss_pred             CCCceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCC----------ChHHHHHhHhhhCCCCCCCCCCCCcc
Q psy12030        173 QLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAK----------HKANLKTHIAIKHSDRILPPQEGRVW  242 (245)
Q Consensus       173 h~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~----------~~~~l~~H~~~~~~~~~~~C~~C~~~  242 (245)
                      ++.++.|+ ||+.+ ....|..|+.+|.+ ++++.|+.|++.|.          ..+.|..|..+ .|.+++.|..||+.
T Consensus       475 ~Hkpv~Cp-Cg~~~-~R~~L~~H~~thCp-~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~-CG~rt~~C~~Cgk~  550 (567)
T PLN03086        475 FHEPLQCP-CGVVL-EKEQMVQHQASTCP-LRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-CGSRTAPCDSCGRS  550 (567)
T ss_pred             cCCCccCC-CCCCc-chhHHHhhhhccCC-CCceeCCCCCCccccCccccchhhhhhhHHHHHHh-cCCcceEccccCCe
Confidence            77788888 88654 66888888888877 88888888888884          23578888877 48888888888887


Q ss_pred             cc
Q psy12030        243 TR  244 (245)
Q Consensus       243 f~  244 (245)
                      |+
T Consensus       551 Vr  552 (567)
T PLN03086        551 VM  552 (567)
T ss_pred             ee
Confidence            75

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.33  E-value=5e-12  Score=107.48  Aligned_cols=145  Identities=21%  Similarity=0.450  Sum_probs=113.4

Q ss_pred             ceecccccccccChhHHhcchhcccCCCCCccCCC--CcccccChHHHHHhcCCccccCcCCCccCchhHHHhHHhhhcC
Q psy12030         69 GFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ--CKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECG  146 (245)
Q Consensus        69 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  146 (245)
                      .-.|..|....... .|..|.....  .....|+.  ||..| .+..+..|    +.|..|++.|. ...|..|++.++ 
T Consensus       407 ~V~C~NC~~~i~l~-~l~lHe~~C~--r~~V~Cp~~~Cg~v~-~r~el~~H----~~C~~Cgk~f~-~s~LekH~~~~H-  476 (567)
T PLN03086        407 TVECRNCKHYIPSR-SIALHEAYCS--RHNVVCPHDGCGIVL-RVEEAKNH----VHCEKCGQAFQ-QGEMEKHMKVFH-  476 (567)
T ss_pred             eEECCCCCCccchh-HHHHHHhhCC--CcceeCCccccccee-eccccccC----ccCCCCCCccc-hHHHHHHHHhcC-
Confidence            35799998876654 4558875442  34567885  99988 34444555    68999999996 678999999984 


Q ss_pred             CCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCC----------hhHHHHHHhHHhCCCCCcccCCCccc
Q psy12030        147 QEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRY----------KTGLYRHKREECGQEPKYQCPHCPHK  214 (245)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~----------~~~l~~H~~~h~~~~~~~~C~~C~~~  214 (245)
                        .++.|+ |++.+ .+..|..|+.+|-+  ++.|..|++.|..          .+.|..|.... | .+++.|..||+.
T Consensus       477 --kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G-~rt~~C~~Cgk~  550 (567)
T PLN03086        477 --EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-G-SRTAPCDSCGRS  550 (567)
T ss_pred             --CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-C-CcceEccccCCe
Confidence              689999 99755 67999999887764  5999999999852          45899999986 7 999999999988


Q ss_pred             CCChHHHHHhHhhhCC
Q psy12030        215 AKHKANLKTHIAIKHS  230 (245)
Q Consensus       215 f~~~~~l~~H~~~~~~  230 (245)
                      +..+ .|..|+...|.
T Consensus       551 Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        551 VMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             eeeh-hHHHHHHHhhc
Confidence            8766 67888877765

>PHA00733 hypothetical protein

Probab=99.26  E-value=6.8e-12  Score=87.58  Aligned_cols=80  Identities=16%  Similarity=0.314  Sum_probs=57.3

Q ss_pred             CCCccCCCCCCcCCChHHHHhh------hcCCC-CceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHH
Q psy12030        148 EPKYQCPHCPHRAKHKANLKTH------IAPQL-GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKAN  220 (245)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~l~~H------~~~h~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~  220 (245)
                      ++++.|.+|.+.|.+...|..+      +..+. .+|.|+.||+.|.....|..|++.+   +.+|.|+.|++.|.....
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h---~~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT---EHSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC---CcCccCCCCCCccCCHHH
Confidence            4566777777776666555554      22222 2588888888888888888888765   346888888888888888


Q ss_pred             HHHhHhhhCC
Q psy12030        221 LKTHIAIKHS  230 (245)
Q Consensus       221 l~~H~~~~~~  230 (245)
                      |..|+...|+
T Consensus       115 L~~H~~~~h~  124 (128)
T PHA00733        115 TLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHhcC
Confidence            8888887775

>PHA00733 hypothetical protein

Probab=99.15  E-value=4.9e-11  Score=83.28  Aligned_cols=78  Identities=22%  Similarity=0.284  Sum_probs=60.0

Q ss_pred             cccCcCCCccCchhHHH------hHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCCceeCCCCCCccCChhHHHHH
Q psy12030        122 FACDVCGKEYKYKRGLY------RHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRH  195 (245)
Q Consensus       122 ~~C~~C~~~f~~~~~l~------~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H  195 (245)
                      +.|.+|...|.....|.      .|+. +++ .++|.|+.|++.|.+...|..|++.+..+|.|.+|+++|.....|..|
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~-~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~sL~~H  118 (128)
T PHA00733         41 LIRAVVKTLIYNPQLLDESSYLYKLLT-SKA-VSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDH  118 (128)
T ss_pred             HHHHHHhhhccChhhhcchHHHHhhcc-cCC-CCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHHHHHH
Confidence            44444554444444444      4432 234 788999999999999999999999877779999999999999999999


Q ss_pred             HhHHhC
Q psy12030        196 KREECG  201 (245)
Q Consensus       196 ~~~h~~  201 (245)
                      +...|+
T Consensus       119 ~~~~h~  124 (128)
T PHA00733        119 VCKKHN  124 (128)
T ss_pred             HHHhcC
Confidence            988776

>PHA02768 hypothetical protein; Provisional

Probab=99.10  E-value=6.3e-11  Score=68.36  Aligned_cols=42  Identities=17%  Similarity=0.504  Sum_probs=26.1

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHH
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANL  221 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l  221 (245)
                      |+|+.||+.|...++|..|+++|+   ++|+|..|++.|...+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~---k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN---TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC---CcccCCcccceeccccee
Confidence            566666666666666666666664   456666666666655544

>PHA02768 hypothetical protein; Provisional

Probab=99.03  E-value=9.8e-11  Score=67.55  Aligned_cols=37  Identities=19%  Similarity=0.367  Sum_probs=27.1

Q ss_pred             cccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCCcccc
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTR  244 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~  244 (245)
                      |.|+.||+.|+.++.|..|+++|+  ++|+|..|++.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~   42 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISL   42 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceec
Confidence            677777777777777777777776  5777777777663

>KOG3993|consensus

Probab=98.91  E-value=2.2e-10  Score=92.14  Aligned_cols=160  Identities=19%  Similarity=0.324  Sum_probs=91.9

Q ss_pred             ceecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcC-----------------------------
Q psy12030         69 GFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLS-----------------------------  119 (245)
Q Consensus        69 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~-----------------------------  119 (245)
                      .|.|..|-..|.+...|.+|.-...- ...|+|++|++.|..-.+|-.|.+                             
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV-~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea  345 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIV-HVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEA  345 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeE-EeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence            48899999899999999888754433 445777777777766666644431                             


Q ss_pred             ---------CccccCcCCCccCchhHHHhHHhhhcCCCCC----------------ccCCCCCCcCCChHHHHhhhcCCC
Q psy12030        120 ---------GMFACDVCGKEYKYKRGLYRHKKFECGQEPK----------------YQCPHCPHRAKHKANLKTHIAPQL  174 (245)
Q Consensus       120 ---------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------------~~C~~C~~~f~~~~~l~~H~~~h~  174 (245)
                               +.|.|.+|++.|....-|+.|+.+|+.....                +.+..+.-.+.....--.+.-.+.
T Consensus       346 ~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a  425 (500)
T KOG3993|consen  346 ERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVA  425 (500)
T ss_pred             cccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeee
Confidence                     1255666666666666666665555431110                112222211111111000101111


Q ss_pred             Cc---eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        175 GV---FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       175 ~~---~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      +.   ..+++||..+..+..--.+.+.-.. +.-|.|.+|.-.|.++..|.+|+..-|.
T Consensus       426 ~sael~~pp~~~~ppsss~~sgg~~rlg~~-~q~f~~ky~~atfyss~~ltrhin~~Hp  483 (500)
T KOG3993|consen  426 GSAELELPPYDGSPPSSSGSSGGYGRLGIA-EQGFTCKYCPATFYSSPGLTRHINKCHP  483 (500)
T ss_pred             ccccccCCCCCCCCcccCCCCCccccccch-hhccccccchHhhhcCcchHhHhhhcCh
Confidence            11   3356677666665554444444444 5569999999999999999999877663

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.87  E-value=8.4e-10  Score=54.53  Aligned_cols=24  Identities=8%  Similarity=0.007  Sum_probs=13.4

Q ss_pred             HHHhHhhhCCCCCCCCCCCCcccc
Q psy12030        221 LKTHIAIKHSDRILPPQEGRVWTR  244 (245)
Q Consensus       221 l~~H~~~~~~~~~~~C~~C~~~f~  244 (245)
                      |.+|+++|+|++||.|++|++.|.
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeC
Confidence            455555555555555555555553

...

>PHA00616 hypothetical protein

Probab=98.86  E-value=1e-09  Score=60.24  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=27.6

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      ||+|+.||+.|..++.|.+|++.|||++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            5788888888888888888888888888887754

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.81  E-value=2.7e-09  Score=52.71  Aligned_cols=26  Identities=38%  Similarity=0.784  Sum_probs=23.8

Q ss_pred             HHHHHHhHHhCCCCCcccCCCcccCCC
Q psy12030        191 GLYRHKREECGQEPKYQCPHCPHKAKH  217 (245)
Q Consensus       191 ~l~~H~~~h~~~~~~~~C~~C~~~f~~  217 (245)
                      +|.+|+++|++ ++||.|++|++.|.+
T Consensus         1 ~l~~H~~~H~~-~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTG-EKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSS-SSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCC-CCCCCCCCCcCeeCc
Confidence            58999999999 999999999999974

...

>KOG3993|consensus

Probab=98.79  E-value=4.5e-10  Score=90.37  Aligned_cols=146  Identities=15%  Similarity=0.254  Sum_probs=93.6

Q ss_pred             CccCCCCcccccChHHHHHhc-----CCccccCcCCCccCchhHHHhHHhhhcCCCCCcc--CCCCCCcCCChHHHHhhh
Q psy12030         98 KYQCPQCKDSFFSWSAFHKNL-----SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQ--CPHCPHRAKHKANLKTHI  170 (245)
Q Consensus        98 ~~~C~~C~~~f~~~~~l~~h~-----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~--C~~C~~~f~~~~~l~~H~  170 (245)
                      .|.|.+|...|.+...|-+|.     ...|+|++|+++|.-..+|..|.|+|-.....-.  -+-=.+....+...+.=.
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~  346 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence            499999999999999998887     3479999999999999999999999954111000  000000000011111101


Q ss_pred             c----CCCCceeCCCCCCccCChhHHHHHHhHHhCCC-------------------------------------------
Q psy12030        171 A----PQLGVFACNVCGKGYRYKTGLYRHKREECGQE-------------------------------------------  203 (245)
Q Consensus       171 ~----~h~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-------------------------------------------  203 (245)
                      +    .-.+.|.|..|++.|....+|+.|+.+|+..+                                           
T Consensus       347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~  426 (500)
T KOG3993|consen  347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAG  426 (500)
T ss_pred             ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeec
Confidence            1    12224888888888888888888877775411                                           


Q ss_pred             --CCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCCccc
Q psy12030        204 --PKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWT  243 (245)
Q Consensus       204 --~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f  243 (245)
                        --..|++||-.+.++..-..+.+.-+.+..|.|.+|.-.|
T Consensus       427 sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atf  468 (500)
T KOG3993|consen  427 SAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATF  468 (500)
T ss_pred             cccccCCCCCCCCcccCCCCCccccccchhhccccccchHhh
Confidence              1244666776666666555565555666677777776554

>PHA00732 hypothetical protein

Probab=98.57  E-value=4.1e-08  Score=62.27  Aligned_cols=44  Identities=27%  Similarity=0.556  Sum_probs=20.2

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHh
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIA  226 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~  226 (245)
                      |.|+.||+.|.+.+.|..|++.++.   ++.|+.||+.|.   .|..|++
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~   45 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFY   45 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhc
Confidence            4455555555555555555543211   134555555554   2444443

>PHA00616 hypothetical protein

Probab=98.52  E-value=3.2e-08  Score=54.37  Aligned_cols=39  Identities=18%  Similarity=0.208  Sum_probs=33.5

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKA  215 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f  215 (245)
                      ||.|..||+.|...+.|..|++.||+ ++++.|+.=-..|
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg-~~~~~~~~~y~~f   39 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHK-QNKLTLEYFYIYF   39 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcC-CCccceeEEEEEE
Confidence            48899999999999999999999999 8999987643333

>PHA00732 hypothetical protein

Probab=98.52  E-value=9.8e-08  Score=60.53  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=33.4

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCCcccc
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTR  244 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~  244 (245)
                      ||.|+.||+.|.+.+.|..|++.+|.  ++.|++||+.|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~   38 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR   38 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC
Confidence            68999999999999999999986443  368999999986

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.46  E-value=3.2e-07  Score=54.08  Aligned_cols=51  Identities=29%  Similarity=0.602  Sum_probs=40.5

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCC-CCCcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQ-EPKYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      |.|+.|++ ..+...|..|....|.. .+.+.||+|...+.  .+|..|+..+|+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            78999999 45677899998876653 45799999998654  489999998875

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.16  E-value=1.2e-06  Score=41.93  Aligned_cols=22  Identities=41%  Similarity=0.833  Sum_probs=13.8

Q ss_pred             cccCCCcccCCChHHHHHhHhh
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAI  227 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~  227 (245)
                      |.|+.|++.|.+.+.|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.04  E-value=3.4e-06  Score=40.58  Aligned_cols=24  Identities=33%  Similarity=0.851  Sum_probs=13.9

Q ss_pred             cccCCCcccCCChHHHHHhHhhhC
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      |.|++|++.|.+...|..|++++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            456666666666666666666554

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.03  E-value=3.6e-06  Score=40.16  Aligned_cols=23  Identities=39%  Similarity=0.940  Sum_probs=19.2

Q ss_pred             eeCCCCCCccCChhHHHHHHhHH
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h  199 (245)
                      |.|+.|++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            67888888888888888888774

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.01  E-value=7.4e-06  Score=48.21  Aligned_cols=37  Identities=32%  Similarity=0.600  Sum_probs=20.3

Q ss_pred             cccCcCCCccCchhHHHhHHhhhcCC-CCCccCCCCCCc
Q psy12030        122 FACDVCGKEYKYKRGLYRHKKFECGQ-EPKYQCPHCPHR  159 (245)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~~~C~~C~~~  159 (245)
                      |+|++|++ ..+...|..|....|.. .+.+.|++|...
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~   40 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSR   40 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhh
Confidence            66666766 34455666665544432 234556655543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.97  E-value=4e-06  Score=47.07  Aligned_cols=41  Identities=22%  Similarity=0.499  Sum_probs=26.8

Q ss_pred             HHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCC
Q psy12030        193 YRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRI  233 (245)
Q Consensus       193 ~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  233 (245)
                      ..+.+.+...+.|-.|++|+..+.+..+|++|+.+.|+.+|
T Consensus        12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            55666666668889999999999999999999999998876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.95  E-value=5.2e-06  Score=41.33  Aligned_cols=26  Identities=19%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      ||.|..|++.|.+...|..|++.|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            57788888888888888888776653

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.84  E-value=1.1e-05  Score=54.14  Aligned_cols=71  Identities=21%  Similarity=0.400  Sum_probs=13.3

Q ss_pred             cCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC-ceeCCCCCCccCChhHHHHHHhHH
Q psy12030        124 CDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG-VFACNVCGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       124 C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~C~~C~~~f~~~~~l~~H~~~h  199 (245)
                      |..|+..|.+...|..|+...|+-..+     ....+.....+..+.+.... .+.|..|++.|.+...|..|++.+
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccc-----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            666777777777777776655551111     11111122233333332222 255666666666666666666543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.81  E-value=1.9e-05  Score=37.88  Aligned_cols=24  Identities=42%  Similarity=0.916  Sum_probs=18.7

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHh
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREEC  200 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~  200 (245)
                      |.|++|++.|.+...|..|+.+||
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            678889999999999999988774

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.77  E-value=1.7e-05  Score=53.05  Aligned_cols=69  Identities=16%  Similarity=0.399  Sum_probs=18.6

Q ss_pred             ecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHh----cCCccccCcCCCccCchhHHHhHHhhh
Q psy12030         71 ECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKN----LSGMFACDVCGKEYKYKRGLYRHKKFE  144 (245)
Q Consensus        71 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h----~~~~~~C~~C~~~f~~~~~l~~H~~~h  144 (245)
                      +|..|+..|.+...|..||...|+...+     ....+.....+...    +...+.|..|++.|.+...|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccccccccccccccccccc-----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            4899999999999999999877763222     11111122222222    223578888888888888888888764

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.59  E-value=3.6e-05  Score=38.18  Aligned_cols=26  Identities=38%  Similarity=0.905  Sum_probs=22.8

Q ss_pred             ceecccccccccChhHHhcchhcccC
Q psy12030         69 GFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        69 ~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      +|.|..|++.|.+...|..|++.|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            58899999999999999999988754

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.57  E-value=3.1e-05  Score=60.81  Aligned_cols=43  Identities=26%  Similarity=0.416  Sum_probs=35.8

Q ss_pred             CCCcccCC--CcccCCChHHHHHhHhhhC-------------------CCCCCCCCCCCccccC
Q psy12030        203 EPKYQCPH--CPHKAKHKANLKTHIAIKH-------------------SDRILPPQEGRVWTRA  245 (245)
Q Consensus       203 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~-------------------~~~~~~C~~C~~~f~~  245 (245)
                      +|||+|++  |+|++.....|+-|+.--|                   .+|||+|++|+|++++
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKN  410 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKN  410 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhcc
Confidence            68999987  9999999999999986433                   3699999999998864

>KOG2231|consensus

Probab=97.42  E-value=0.00032  Score=61.40  Aligned_cols=121  Identities=20%  Similarity=0.409  Sum_probs=74.0

Q ss_pred             cCCCCcccccChHHHHHhcC---CccccCcC---------CCccCchhHHHhHHhhhcCCCC----CccCCCCCCcCCCh
Q psy12030        100 QCPQCKDSFFSWSAFHKNLS---GMFACDVC---------GKEYKYKRGLYRHKKFECGQEP----KYQCPHCPHRAKHK  163 (245)
Q Consensus       100 ~C~~C~~~f~~~~~l~~h~~---~~~~C~~C---------~~~f~~~~~l~~H~~~h~~~~~----~~~C~~C~~~f~~~  163 (245)
                      .|..| -.|.+...|+.|+.   +.+.|..|         .....+...|.+|++.-...++    .-.|..|...|...
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~  195 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDD  195 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccH
Confidence            34445 44455555555551   23334333         2223455677777664322122    24588999999999


Q ss_pred             HHHHhhhcCCCCceeCCCC------CCccCChhHHHHHHhHHhCCCCCcccC--CC-cccCCChHHHHHhHhhh
Q psy12030        164 ANLKTHIAPQLGVFACNVC------GKGYRYKTGLYRHKREECGQEPKYQCP--HC-PHKAKHKANLKTHIAIK  228 (245)
Q Consensus       164 ~~l~~H~~~h~~~~~C~~C------~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C-~~~f~~~~~l~~H~~~~  228 (245)
                      ..|.+|++.++  |.|..|      +.-|....+|..|.+.+|     |.|.  .| .+.|.....+..|++.|
T Consensus       196 ~el~rH~~~~h--~~chfC~~~~~~neyy~~~~dLe~HfR~~H-----flCE~~~C~~~~f~~~~~~ei~lk~~  262 (669)
T KOG2231|consen  196 DELYRHLRFDH--EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH-----FLCEEEFCRTKKFYVAFELEIELKAH  262 (669)
T ss_pred             HHHHHhhccce--eheeecCcccccchhcccchHHHHHhhhcC-----ccccccccccceeeehhHHHHHHHhh
Confidence            99999988766  444444      566888899999988764     6787  56 34455555666666633

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.41  E-value=8.9e-05  Score=35.62  Aligned_cols=23  Identities=48%  Similarity=1.051  Sum_probs=12.9

Q ss_pred             cccCCCcccCCChHHHHHhHhhhC
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      |+|+.|+.... ...|..|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            45666666665 666666666655

>smart00355 ZnF_C2H2 zinc finger

Probab=97.35  E-value=0.00022  Score=34.66  Aligned_cols=23  Identities=39%  Similarity=0.830  Sum_probs=13.8

Q ss_pred             cccCCCcccCCChHHHHHhHhhh
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~~  228 (245)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            45666666666666666666543

>PRK04860 hypothetical protein; Provisional

Probab=97.27  E-value=0.00014  Score=52.82  Aligned_cols=35  Identities=29%  Similarity=0.690  Sum_probs=18.8

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAK  216 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~  216 (245)
                      |.|. |+.   ....+.+|.++|.+ +++|.|..|+..|.
T Consensus       120 Y~C~-C~~---~~~~~rrH~ri~~g-~~~YrC~~C~~~l~  154 (160)
T PRK04860        120 YRCK-CQE---HQLTVRRHNRVVRG-EAVYRCRRCGETLV  154 (160)
T ss_pred             EEcC-CCC---eeCHHHHHHHHhcC-CccEECCCCCceeE
Confidence            5554 554   44445555555555 55555555555544

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.23  E-value=8.9e-05  Score=58.30  Aligned_cols=25  Identities=28%  Similarity=0.588  Sum_probs=22.4

Q ss_pred             CCCCcccCCCcccCCChHHHHHhHh
Q psy12030        202 QEPKYQCPHCPHKAKHKANLKTHIA  226 (245)
Q Consensus       202 ~~~~~~C~~C~~~f~~~~~l~~H~~  226 (245)
                      +.|||+|++|+|++.....|+-|..
T Consensus       395 ~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         395 KDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCCceeccccchhhccCccceeccc
Confidence            3789999999999999999999865

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.12  E-value=0.00029  Score=34.11  Aligned_cols=23  Identities=22%  Similarity=0.566  Sum_probs=16.1

Q ss_pred             cccCCCcccCCChHHHHHhHhhh
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~~  228 (245)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56777777777777777777643

>smart00355 ZnF_C2H2 zinc finger

Probab=97.03  E-value=0.00052  Score=33.23  Aligned_cols=24  Identities=33%  Similarity=0.750  Sum_probs=19.8

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHh
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREEC  200 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~  200 (245)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            568888999998889998888663

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.98  E-value=0.00089  Score=32.03  Aligned_cols=24  Identities=25%  Similarity=0.523  Sum_probs=18.7

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      |.|+.|++... ...|..|++.+++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            68999998888 8899999988764

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.75  E-value=0.00079  Score=33.28  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=17.2

Q ss_pred             cccCCCcccCCChHHHHHhHhh
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAI  227 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~  227 (245)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2231|consensus

Probab=96.72  E-value=0.0028  Score=55.74  Aligned_cols=115  Identities=24%  Similarity=0.427  Sum_probs=81.6

Q ss_pred             ccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCC---------CCcCCChHHHHhh
Q psy12030         99 YQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHC---------PHRAKHKANLKTH  169 (245)
Q Consensus        99 ~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C---------~~~f~~~~~l~~H  169 (245)
                      +.|.+|+..|.-       +.....|..| ..|.+...|..|+...|+   .+.|..|         .....++..|..|
T Consensus       100 ~~C~~C~~~~~~-------~~~~~~~~~c-~~~~s~~~Lk~H~~~~H~---~~~c~lC~~~~kif~~e~k~Yt~~el~~h  168 (669)
T KOG2231|consen  100 HSCHICDRRFRA-------LYNKKECLHC-TEFKSVENLKNHMRDQHK---LHLCSLCLQNLKIFINERKLYTRAELNLH  168 (669)
T ss_pred             hhcCccccchhh-------hcccCCCccc-cchhHHHHHHHHHHHhhh---hhccccccccceeeeeeeehehHHHHHHH
Confidence            678888877521       0112468888 888899999999966544   2444443         2233446678888


Q ss_pred             hcC-------CCCceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC------cccCCChHHHHHhHhhhC
Q psy12030        170 IAP-------QLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC------PHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       170 ~~~-------h~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C------~~~f~~~~~l~~H~~~~~  229 (245)
                      +..       +.|--.|..|...|.....|++|++.+|     |.|..|      +..|..-..|..|.+..|
T Consensus       169 ~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  169 LMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             HhcCCCccccccCCccchhhhhhhccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            643       2333679999999999999999998765     466666      567888999999999776

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.69  E-value=0.0018  Score=36.55  Aligned_cols=29  Identities=24%  Similarity=0.341  Sum_probs=19.4

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCCCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQEPK  205 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  205 (245)
                      |-.|++|+..+....+|.+|+.+.|+ .+|
T Consensus        24 PatCP~C~a~~~~srnLrRHle~~H~-~k~   52 (54)
T PF09237_consen   24 PATCPICGAVIRQSRNLRRHLEIRHF-KKP   52 (54)
T ss_dssp             -EE-TTT--EESSHHHHHHHHHHHTT-TS-
T ss_pred             CCCCCcchhhccchhhHHHHHHHHhc-ccC
Confidence            47788888888888888888888777 443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.67  E-value=0.0012  Score=31.82  Aligned_cols=23  Identities=30%  Similarity=0.810  Sum_probs=17.7

Q ss_pred             eeCCCCCCccCChhHHHHHHhHH
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h  199 (245)
                      |.|.+|+..|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56888888888888888887654

>PRK04860 hypothetical protein; Provisional

Probab=96.60  E-value=0.0018  Score=47.10  Aligned_cols=37  Identities=14%  Similarity=0.317  Sum_probs=33.3

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCCcccc
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTR  244 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~  244 (245)
                      -+|.|. |+.   ....+.+|.+++.++++|.|..|+..|.
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeE
Confidence            479998 997   7888999999999999999999998874

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.53  E-value=0.0019  Score=31.89  Aligned_cols=22  Identities=27%  Similarity=0.702  Sum_probs=19.4

Q ss_pred             eecccccccccChhHHhcchhc
Q psy12030         70 FECQVCGKRYKYKRGLHRHKQD   91 (245)
Q Consensus        70 ~~C~~C~~~f~~~~~l~~H~~~   91 (245)
                      |.|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6799999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.26  E-value=0.0059  Score=48.92  Aligned_cols=122  Identities=24%  Similarity=0.483  Sum_probs=69.6

Q ss_pred             eeccc--ccccccChhHHhcchhcccCCCCCccCCCCc---ccc------cChHHHHHhcCC---------ccccCcCCC
Q psy12030         70 FECQV--CGKRYKYKRGLHRHKQDECGQEPKYQCPQCK---DSF------FSWSAFHKNLSG---------MFACDVCGK  129 (245)
Q Consensus        70 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~---~~f------~~~~~l~~h~~~---------~~~C~~C~~  129 (245)
                      |.|+.  |..+......|+.|....|+   .+.|.+|-   +.|      .++..|+.|..+         .-.|..|..
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~---~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~  228 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHG---FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKI  228 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcC---cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccc
Confidence            77876  77777778889999887765   45666663   233      234455666522         345777777


Q ss_pred             ccCchhHHHhHHhhhcCCCCCccCCCCCCc-------CCChHHHHhhhcCCCCceeCCC--CC----CccCChhHHHHHH
Q psy12030        130 EYKYKRGLYRHKKFECGQEPKYQCPHCPHR-------AKHKANLKTHIAPQLGVFACNV--CG----KGYRYKTGLYRHK  196 (245)
Q Consensus       130 ~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~-------f~~~~~l~~H~~~h~~~~~C~~--C~----~~f~~~~~l~~H~  196 (245)
                      -|.+-..|..|+|..|.     .|-+|.+.       |.+-..|.+|.+.-+  |.|.+  |.    .+|.....|+.|+
T Consensus       229 ~FYdDDEL~~HcR~~HE-----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h--y~ct~qtc~~~k~~vf~~~~el~~h~  301 (493)
T COG5236         229 YFYDDDELRRHCRLRHE-----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH--YCCTFQTCRVGKCYVFPYHTELLEHL  301 (493)
T ss_pred             eecChHHHHHHHHhhhh-----hhhhhhccCccchhhhhCHHHHHHHhhcCc--eEEEEEEEecCcEEEeccHHHHHHHH
Confidence            77777777777775443     34444433       333444555533222  33322  21    2456666666666


Q ss_pred             hHHhC
Q psy12030        197 REECG  201 (245)
Q Consensus       197 ~~h~~  201 (245)
                      ...|+
T Consensus       302 ~~~h~  306 (493)
T COG5236         302 TRFHK  306 (493)
T ss_pred             HHHhh
Confidence            55443

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.50  E-value=0.013  Score=28.26  Aligned_cols=20  Identities=30%  Similarity=0.597  Sum_probs=12.1

Q ss_pred             cccCCCcccCCChHHHHHhHh
Q psy12030        206 YQCPHCPHKAKHKANLKTHIA  226 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~  226 (245)
                      ..|+.||..| ....|.+|++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            3566666666 5556666654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.46  E-value=0.012  Score=30.80  Aligned_cols=23  Identities=13%  Similarity=0.392  Sum_probs=17.1

Q ss_pred             CcccCCCcccCCChHHHHHhHhh
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAI  227 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~  227 (245)
                      +|.|.+|++.|.+...+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            47778888888877777777653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1146|consensus

Probab=95.44  E-value=0.0057  Score=57.26  Aligned_cols=103  Identities=18%  Similarity=0.358  Sum_probs=70.1

Q ss_pred             CCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCC---------------------------CceeC
Q psy12030        127 CGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQL---------------------------GVFAC  179 (245)
Q Consensus       127 C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~---------------------------~~~~C  179 (245)
                      ++..+..+..+..|+...+...+.+.|+.|+..|.....|..|++.-+                           ++|.|
T Consensus       442 ~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C  521 (1406)
T KOG1146|consen  442 AEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPC  521 (1406)
T ss_pred             hhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccc
Confidence            344444445555555444444577888888888888888888876511                           02778


Q ss_pred             CCCCCccCChhHHHHHHhHHhC------------------------------------------CCCCcccCCCcccCCC
Q psy12030        180 NVCGKGYRYKTGLYRHKREECG------------------------------------------QEPKYQCPHCPHKAKH  217 (245)
Q Consensus       180 ~~C~~~f~~~~~l~~H~~~h~~------------------------------------------~~~~~~C~~C~~~f~~  217 (245)
                      ..|...+....+|..|+..--.                                          .+.++.|.+|++-.+-
T Consensus       522 ~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetni  601 (1406)
T KOG1146|consen  522 RACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNI  601 (1406)
T ss_pred             eeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhh
Confidence            8888888888888888764200                                          0235889999888888


Q ss_pred             hHHHHHhHhhhC
Q psy12030        218 KANLKTHIAIKH  229 (245)
Q Consensus       218 ~~~l~~H~~~~~  229 (245)
                      .-+|+.|+..-+
T Consensus       602 arnlrihmtss~  613 (1406)
T KOG1146|consen  602 ARNLRIHMTASP  613 (1406)
T ss_pred             hhccccccccCC
Confidence            888888886543

>TIGR00622 ssl1 transcription factor ssl1

Probab=95.35  E-value=0.046  Score=36.91  Aligned_cols=21  Identities=19%  Similarity=0.659  Sum_probs=9.5

Q ss_pred             eeCCCCCCccCChhHHHHHHh
Q psy12030        177 FACNVCGKGYRYKTGLYRHKR  197 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~  197 (245)
                      |.|+.|...|--.-+...|..
T Consensus        82 y~C~~C~~~FC~dCD~fiHe~  102 (112)
T TIGR00622        82 YVCAVCKNVFCVDCDVFVHES  102 (112)
T ss_pred             eeCCCCCCccccccchhhhhh
Confidence            444444444444444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.73  E-value=0.028  Score=27.07  Aligned_cols=19  Identities=26%  Similarity=0.871  Sum_probs=11.4

Q ss_pred             eCCCCCCccCChhHHHHHHh
Q psy12030        178 ACNVCGKGYRYKTGLYRHKR  197 (245)
Q Consensus       178 ~C~~C~~~f~~~~~l~~H~~  197 (245)
                      .|+.||+.| ....|..|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            466666666 4555666654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.51  E-value=0.04  Score=28.80  Aligned_cols=24  Identities=21%  Similarity=0.538  Sum_probs=19.1

Q ss_pred             CceeCCCCCCccCChhHHHHHHhH
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKRE  198 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~  198 (245)
                      ++|.|++|+..|.+...+..|+..
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHCh
Confidence            357788888888888888888764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.34  E-value=0.026  Score=29.24  Aligned_cols=11  Identities=45%  Similarity=1.156  Sum_probs=6.6

Q ss_pred             eeCCCCCCccC
Q psy12030        177 FACNVCGKGYR  187 (245)
Q Consensus       177 ~~C~~C~~~f~  187 (245)
                      |.|.+||..+.
T Consensus         2 ~~C~~CGy~y~   12 (33)
T cd00350           2 YVCPVCGYIYD   12 (33)
T ss_pred             EECCCCCCEEC
Confidence            56666665544

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2482|consensus

Probab=94.10  E-value=0.065  Score=43.11  Aligned_cols=24  Identities=25%  Similarity=0.582  Sum_probs=21.8

Q ss_pred             ceecccccccccChhHHhcchhcc
Q psy12030         69 GFECQVCGKRYKYKRGLHRHKQDE   92 (245)
Q Consensus        69 ~~~C~~C~~~f~~~~~l~~H~~~h   92 (245)
                      .+.|-.|.+.|.++..|+.||+..
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhc
Confidence            489999999999999999999864

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.86  E-value=0.06  Score=43.37  Aligned_cols=74  Identities=20%  Similarity=0.364  Sum_probs=46.5

Q ss_pred             cCCCCCCcCCChHHHHhhhcCCCCc-eeCCCCCC----ccCChhHHHHHHhHHhCCCCCcccCC--Cc----ccCCChHH
Q psy12030        152 QCPHCPHRAKHKANLKTHIAPQLGV-FACNVCGK----GYRYKTGLYRHKREECGQEPKYQCPH--CP----HKAKHKAN  220 (245)
Q Consensus       152 ~C~~C~~~f~~~~~l~~H~~~h~~~-~~C~~C~~----~f~~~~~l~~H~~~h~~~~~~~~C~~--C~----~~f~~~~~  220 (245)
                      .|..|...|.....|.+|++..+.. |.|+.=+.    -|.+...|..|.+.-     .|.|..  |-    .+|.+...
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~-----hy~ct~qtc~~~k~~vf~~~~e  296 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNA-----HYCCTFQTCRVGKCYVFPYHTE  296 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcC-----ceEEEEEEEecCcEEEeccHHH
Confidence            4777777777777777776654443 44443222    366667777776532     366643  42    36788888


Q ss_pred             HHHhHhhhCC
Q psy12030        221 LKTHIAIKHS  230 (245)
Q Consensus       221 l~~H~~~~~~  230 (245)
                      |..|+-..|+
T Consensus       297 l~~h~~~~h~  306 (493)
T COG5236         297 LLEHLTRFHK  306 (493)
T ss_pred             HHHHHHHHhh
Confidence            8888877775

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.76  E-value=0.019  Score=48.76  Aligned_cols=119  Identities=19%  Similarity=0.296  Sum_probs=85.9

Q ss_pred             ccccCcCCCccCchhHHHhHHh--hhcCCC--CCccCC--CCCCcCCChHHHHhhhcCCCCc--eeCC------------
Q psy12030        121 MFACDVCGKEYKYKRGLYRHKK--FECGQE--PKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACN------------  180 (245)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~--~~C~------------  180 (245)
                      .+.|..|...|.....|..|.+  .|.+ +  +++.|+  .|++.|.....+..|...|.+.  +.+.            
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSG-ESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             CCCCccccCCcccccccccccccccccc-ccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            5889999999999999999999  7877 6  899999  7999999999999998777653  2211            


Q ss_pred             -------------------------CCCCccCChhHHHHHHhHHhCCCC--CcccCCCcccCCChHHHHHhHhhhCCCCC
Q psy12030        181 -------------------------VCGKGYRYKTGLYRHKREECGQEP--KYQCPHCPHKAKHKANLKTHIAIKHSDRI  233 (245)
Q Consensus       181 -------------------------~C~~~f~~~~~l~~H~~~h~~~~~--~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  233 (245)
                                               .|...+.....+..|...+.. ..  .+.+..|++.+.....+..|++.+....+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLS-FRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAP  446 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccc-cCCcCCCCCcchhhccCcccccccccccccCCc
Confidence                                     133333444444444444333 22  46677899999999999999888887777


Q ss_pred             CCCCCCCc
Q psy12030        234 LPPQEGRV  241 (245)
Q Consensus       234 ~~C~~C~~  241 (245)
                      +.|..++.
T Consensus       447 ~~~~~~~~  454 (467)
T COG5048         447 LLCSILKS  454 (467)
T ss_pred             eeeccccc
Confidence            76665554

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=93.69  E-value=0.18  Score=34.21  Aligned_cols=25  Identities=32%  Similarity=0.814  Sum_probs=23.8

Q ss_pred             ccc----CCCcccCCChHHHHHhHhhhCC
Q psy12030        206 YQC----PHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       206 ~~C----~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      |.|    +.|++.+.+...+.+|++.+||
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            999    9999999999999999999986

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG1146|consensus

Probab=93.20  E-value=0.0068  Score=56.79  Aligned_cols=29  Identities=17%  Similarity=0.260  Sum_probs=22.0

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      -.+| |+.|...|.....|..||++.+++.
T Consensus      1327 ~~~~-c~~c~~~~~~~~alqihm~~~~~~~ 1355 (1406)
T KOG1146|consen 1327 CTYH-CLACEVLLSGREALQIHMRSSAHRR 1355 (1406)
T ss_pred             cccc-chHHHhhcchhHHHHHHHHHhhhcc
Confidence            3345 8888888888888888888766544

>KOG2785|consensus

Probab=92.99  E-value=0.26  Score=40.44  Aligned_cols=52  Identities=19%  Similarity=0.324  Sum_probs=42.0

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCC----------------------CCCcccCCCc---ccCCChHHHHHhHhhh
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQ----------------------EPKYQCPHCP---HKAKHKANLKTHIAIK  228 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~----------------------~~~~~C~~C~---~~f~~~~~l~~H~~~~  228 (245)
                      -.|-.|+..+.+...-..|+..+||=                      ..-+.|-.|+   +.|.+..+.++||...
T Consensus       167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K  243 (390)
T KOG2785|consen  167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDK  243 (390)
T ss_pred             cceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhc
Confidence            56888999999998899999988871                      2347788888   8899999999998754

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=92.80  E-value=0.044  Score=31.52  Aligned_cols=27  Identities=22%  Similarity=0.536  Sum_probs=13.9

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      |--+.||.||..|....++.+|....|
T Consensus        15 E~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          15 EEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             ceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            444555555555555555555554444

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=92.73  E-value=0.1  Score=25.36  Aligned_cols=12  Identities=8%  Similarity=-0.482  Sum_probs=7.8

Q ss_pred             CCCCCCCccccC
Q psy12030        234 LPPQEGRVWTRA  245 (245)
Q Consensus       234 ~~C~~C~~~f~~  245 (245)
                      -.|+.||+.|.+
T Consensus        15 ~~Cp~CG~~F~~   26 (26)
T PF10571_consen   15 KFCPHCGYDFEA   26 (26)
T ss_pred             CcCCCCCCCCcC
Confidence            347777777754

Several members are annotated as putative helicases.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=92.72  E-value=0.029  Score=47.66  Aligned_cols=62  Identities=24%  Similarity=0.419  Sum_probs=56.3

Q ss_pred             ceeCCCCCCccCChhHHHHHHh--HHhCCC--CCcccC--CCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKR--EECGQE--PKYQCP--HCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      ++.|..|...|.....|..|.+  .|.+ +  +|+.|+  .|++.|.....+..|...|.+..++.+..
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSG-ESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKL  356 (467)
T ss_pred             CCCCccccCCcccccccccccccccccc-ccCCceeeeccCCCccccccccccCCcccccCCCcccccc
Confidence            4789999999999999999999  7877 7  999999  79999999999999999999988877654

>TIGR00622 ssl1 transcription factor ssl1

Probab=92.59  E-value=0.17  Score=34.20  Aligned_cols=79  Identities=16%  Similarity=0.215  Sum_probs=54.1

Q ss_pred             CCCccCCCCCCcCCChHHHHhhhcC--CCCc------------eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcc
Q psy12030        148 EPKYQCPHCPHRAKHKANLKTHIAP--QLGV------------FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPH  213 (245)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~------------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~  213 (245)
                      +-|..|++||-...+...|.+-...  ...+            ..|-.|+..|........  ..-.. ...|.|+.|..
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~-~~~y~C~~C~~   89 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKD-SHRYVCAVCKN   89 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccc--ccccc-ccceeCCCCCC
Confidence            6789999999999999998876321  0111            248889998876532110  00111 44699999999


Q ss_pred             cCCChHHHHHhHhhhC
Q psy12030        214 KAKHKANLKTHIAIKH  229 (245)
Q Consensus       214 ~f~~~~~l~~H~~~~~  229 (245)
                      .|-..-+.-.|...|.
T Consensus        90 ~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        90 VFCVDCDVFVHESLHC  105 (112)
T ss_pred             ccccccchhhhhhccC
Confidence            9998888888876655

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2893|consensus

Probab=92.35  E-value=0.037  Score=42.16  Aligned_cols=41  Identities=24%  Similarity=0.433  Sum_probs=19.0

Q ss_pred             cCCCCcccccChHHHHHhc-CCccccCcCCCccCchhHHHhH
Q psy12030        100 QCPQCKDSFFSWSAFHKNL-SGMFACDVCGKEYKYKRGLYRH  140 (245)
Q Consensus       100 ~C~~C~~~f~~~~~l~~h~-~~~~~C~~C~~~f~~~~~l~~H  140 (245)
                      .|.+|++.|.+..-|..|. .+.|+|.+|.+.+.+...|..|
T Consensus        12 wcwycnrefddekiliqhqkakhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeecccccchhhhhhhhhhhccceeeeehhhhccCCCceee
Confidence            3445555555444444444 2344455554444444444444

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=91.02  E-value=0.14  Score=26.74  Aligned_cols=10  Identities=30%  Similarity=0.816  Sum_probs=5.4

Q ss_pred             CCcccCCCcc
Q psy12030        204 PKYQCPHCPH  213 (245)
Q Consensus       204 ~~~~C~~C~~  213 (245)
                      .|..|++||.
T Consensus        17 ~p~~CP~Cg~   26 (34)
T cd00729          17 APEKCPICGA   26 (34)
T ss_pred             CCCcCcCCCC
Confidence            4455666653

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=91.01  E-value=0.19  Score=29.45  Aligned_cols=8  Identities=50%  Similarity=1.593  Sum_probs=3.8

Q ss_pred             CcccCCCc
Q psy12030        205 KYQCPHCP  212 (245)
Q Consensus       205 ~~~C~~C~  212 (245)
                      +|.|+.||
T Consensus        50 ~Y~Cp~CG   57 (61)
T COG2888          50 PYRCPKCG   57 (61)
T ss_pred             ceECCCcC
Confidence            44444444

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=90.90  E-value=0.24  Score=29.10  Aligned_cols=9  Identities=33%  Similarity=1.361  Sum_probs=4.0

Q ss_pred             ccCCCCccc
Q psy12030         99 YQCPQCKDS  107 (245)
Q Consensus        99 ~~C~~C~~~  107 (245)
                      |.|+.||+.
T Consensus        28 F~CPnCGe~   36 (61)
T COG2888          28 FPCPNCGEV   36 (61)
T ss_pred             eeCCCCCce
Confidence            444444433

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=90.74  E-value=0.16  Score=27.13  Aligned_cols=12  Identities=17%  Similarity=0.725  Sum_probs=5.5

Q ss_pred             ecccccccccCh
Q psy12030         71 ECQVCGKRYKYK   82 (245)
Q Consensus        71 ~C~~C~~~f~~~   82 (245)
                      .|+.|+..|.-.
T Consensus         4 ~CP~C~~~~~v~   15 (38)
T TIGR02098         4 QCPNCKTSFRVV   15 (38)
T ss_pred             ECCCCCCEEEeC
Confidence            444454444433

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=90.74  E-value=0.079  Score=30.50  Aligned_cols=31  Identities=19%  Similarity=0.493  Sum_probs=25.7

Q ss_pred             ccCCCceecccccccccChhHHhcchhcccC
Q psy12030         64 QQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        64 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ..++..+.|+.||..|..+.++.+|....|+
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            3456778999999999999999999876654

>KOG2893|consensus

Probab=90.57  E-value=0.062  Score=40.99  Aligned_cols=47  Identities=21%  Similarity=0.487  Sum_probs=32.8

Q ss_pred             CCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        179 CNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       179 C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      |=+|++.|....-|.+|++     .|.|+|.+|-+..-+...|..|-...|.
T Consensus        13 cwycnrefddekiliqhqk-----akhfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQK-----AKHFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeecccccchhhhhhhhhh-----hccceeeeehhhhccCCCceeehhhhhh
Confidence            5567788888777777765     3457888888777777777777544443

>KOG4173|consensus

Probab=90.52  E-value=0.096  Score=39.06  Aligned_cols=46  Identities=26%  Similarity=0.478  Sum_probs=26.0

Q ss_pred             ccccCc--CCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhh
Q psy12030        121 MFACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI  170 (245)
Q Consensus       121 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~  170 (245)
                      .+.|..  |...|.+......|..+-|+    -.|..|.+.|.+...|..|+
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~----~sCs~C~r~~Pt~hLLd~HI  126 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHG----NSCSFCKRAFPTGHLLDAHI  126 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhccc----chhHHHHHhCCchhhhhHHH
Confidence            355554  55566665556666555555    35666666666665555553

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=90.30  E-value=0.2  Score=26.45  Aligned_cols=8  Identities=38%  Similarity=1.186  Sum_probs=3.1

Q ss_pred             cccCcCCC
Q psy12030        122 FACDVCGK  129 (245)
Q Consensus       122 ~~C~~C~~  129 (245)
                      .+|+.|+.
T Consensus        26 v~C~~C~~   33 (36)
T PF13717_consen   26 VRCSKCGH   33 (36)
T ss_pred             EECCCCCC
Confidence            33444433

>PHA00626 hypothetical protein

Probab=90.13  E-value=0.21  Score=28.85  Aligned_cols=14  Identities=21%  Similarity=0.489  Sum_probs=7.7

Q ss_pred             CceeCCCCCCccCC
Q psy12030        175 GVFACNVCGKGYRY  188 (245)
Q Consensus       175 ~~~~C~~C~~~f~~  188 (245)
                      ..|+|+.||+.|+.
T Consensus        22 nrYkCkdCGY~ft~   35 (59)
T PHA00626         22 DDYVCCDCGYNDSK   35 (59)
T ss_pred             cceEcCCCCCeech
Confidence            34666666655543

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=90.06  E-value=0.23  Score=26.45  Aligned_cols=9  Identities=33%  Similarity=0.940  Sum_probs=3.6

Q ss_pred             cccCcCCCc
Q psy12030        122 FACDVCGKE  130 (245)
Q Consensus       122 ~~C~~C~~~  130 (245)
                      .+|+.|+..
T Consensus        26 vrC~~C~~~   34 (37)
T PF13719_consen   26 VRCPKCGHV   34 (37)
T ss_pred             EECCCCCcE
Confidence            334444433

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=89.16  E-value=0.32  Score=35.53  Aligned_cols=22  Identities=41%  Similarity=0.907  Sum_probs=16.3

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCc
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCP  212 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~  212 (245)
                      |.|++||..+             -+ +.|-.||+||
T Consensus       135 ~vC~vCGy~~-------------~g-e~P~~CPiCg  156 (166)
T COG1592         135 WVCPVCGYTH-------------EG-EAPEVCPICG  156 (166)
T ss_pred             EEcCCCCCcc-------------cC-CCCCcCCCCC
Confidence            8888887653             25 7788888887

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=89.14  E-value=0.22  Score=27.69  Aligned_cols=26  Identities=23%  Similarity=0.728  Sum_probs=15.5

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCccc
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHK  214 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~  214 (245)
                      |.|..||..|.-.           . ..+.+|+.||..
T Consensus         3 Y~C~~Cg~~~~~~-----------~-~~~irC~~CG~r   28 (44)
T smart00659        3 YICGECGRENEIK-----------S-KDVVRCRECGYR   28 (44)
T ss_pred             EECCCCCCEeecC-----------C-CCceECCCCCce
Confidence            6677777665532           1 345677777654

present in RNA polymerase I, II and III

>smart00531 TFIIE Transcription initiation factor IIE

Probab=88.37  E-value=0.34  Score=34.87  Aligned_cols=35  Identities=31%  Similarity=0.854  Sum_probs=19.2

Q ss_pred             CCccCCCCcccccChHHHHH-hcCCccccCcCCCcc
Q psy12030         97 PKYQCPQCKDSFFSWSAFHK-NLSGMFACDVCGKEY  131 (245)
Q Consensus        97 ~~~~C~~C~~~f~~~~~l~~-h~~~~~~C~~C~~~f  131 (245)
                      ..|.|+.|+..|.....+.. ...+.|.|+.||...
T Consensus        98 ~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l  133 (147)
T smart00531       98 AYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEEL  133 (147)
T ss_pred             cEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEE
Confidence            45666666666655444432 234446666666544

>KOG2482|consensus

Probab=88.12  E-value=0.68  Score=37.53  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.9

Q ss_pred             cccCCCcccCCChHHHHHhHhhhC
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      ..|-.|.....+...|..||++.|
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vH  303 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVH  303 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHH
Confidence            589999999899999999999887

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=87.85  E-value=0.41  Score=28.19  Aligned_cols=8  Identities=50%  Similarity=1.530  Sum_probs=3.8

Q ss_pred             CcccCCCc
Q psy12030        205 KYQCPHCP  212 (245)
Q Consensus       205 ~~~C~~C~  212 (245)
                      +|.|+.||
T Consensus        48 ~Y~CP~CG   55 (59)
T PRK14890         48 PYTCPKCG   55 (59)
T ss_pred             ceECCCCC
Confidence            44444444

>KOG2186|consensus

Probab=87.71  E-value=0.28  Score=37.95  Aligned_cols=47  Identities=23%  Similarity=0.497  Sum_probs=33.0

Q ss_pred             cccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcC
Q psy12030        122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAP  172 (245)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~  172 (245)
                      |.|..||....- ..+..|+-+-++  ..|.|..|++.|.. ..+..|..-
T Consensus         4 FtCnvCgEsvKK-p~vekH~srCrn--~~fSCIDC~k~F~~-~sYknH~kC   50 (276)
T KOG2186|consen    4 FTCNVCGESVKK-PQVEKHMSRCRN--AYFSCIDCGKTFER-VSYKNHTKC   50 (276)
T ss_pred             Eehhhhhhhccc-cchHHHHHhccC--CeeEEeeccccccc-chhhhhhhh
Confidence            788888876544 446678766555  55888888888886 677777543

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=87.26  E-value=0.16  Score=27.56  Aligned_cols=11  Identities=27%  Similarity=1.123  Sum_probs=6.5

Q ss_pred             eeCCCCCCccC
Q psy12030        177 FACNVCGKGYR  187 (245)
Q Consensus       177 ~~C~~C~~~f~  187 (245)
                      |.|..||..|.
T Consensus         6 y~C~~Cg~~fe   16 (41)
T smart00834        6 YRCEDCGHTFE   16 (41)
T ss_pred             EEcCCCCCEEE
Confidence            55666666554

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=87.25  E-value=0.51  Score=30.13  Aligned_cols=33  Identities=27%  Similarity=0.625  Sum_probs=22.2

Q ss_pred             CCccCCCCCCcCCChHHHHhhhcCCCCceeCCCCCCccCCh
Q psy12030        149 PKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYK  189 (245)
Q Consensus       149 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~  189 (245)
                      ..|.|+.|++.        .+.+.-++.|.|..||..|.--
T Consensus        34 ~~~~Cp~C~~~--------~VkR~a~GIW~C~kCg~~fAGg   66 (89)
T COG1997          34 AKHVCPFCGRT--------TVKRIATGIWKCRKCGAKFAGG   66 (89)
T ss_pred             cCCcCCCCCCc--------ceeeeccCeEEcCCCCCeeccc
Confidence            35778888765        2345566678888888877643

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=86.91  E-value=0.18  Score=29.10  Aligned_cols=29  Identities=24%  Similarity=0.810  Sum_probs=16.3

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcc
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPH  213 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~  213 (245)
                      |.|..||..|.....+.       . +.+-.|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~~-------~-~~~~~CP~Cg~   34 (52)
T TIGR02605         6 YRCTACGHRFEVLQKMS-------D-DPLATCPECGG   34 (52)
T ss_pred             EEeCCCCCEeEEEEecC-------C-CCCCCCCCCCC
Confidence            67777777766432211       1 33456777775

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=86.23  E-value=0.6  Score=27.51  Aligned_cols=10  Identities=40%  Similarity=1.285  Sum_probs=4.9

Q ss_pred             CccCCCCccc
Q psy12030         98 KYQCPQCKDS  107 (245)
Q Consensus        98 ~~~C~~C~~~  107 (245)
                      .|.|+.||+.
T Consensus        25 ~F~CPnCG~~   34 (59)
T PRK14890         25 KFLCPNCGEV   34 (59)
T ss_pred             EeeCCCCCCe
Confidence            3455555544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.20  E-value=0.23  Score=38.20  Aligned_cols=13  Identities=23%  Similarity=0.562  Sum_probs=9.6

Q ss_pred             eeCCCCCCccCCh
Q psy12030        177 FACNVCGKGYRYK  189 (245)
Q Consensus       177 ~~C~~C~~~f~~~  189 (245)
                      +.|+.||.+|...
T Consensus        49 ~vCP~CgyA~~~~   61 (214)
T PF09986_consen   49 WVCPHCGYAAFEE   61 (214)
T ss_pred             EECCCCCCccccc
Confidence            6788888876644

>KOG2186|consensus

Probab=85.87  E-value=0.48  Score=36.68  Aligned_cols=45  Identities=22%  Similarity=0.605  Sum_probs=24.4

Q ss_pred             ccCCCCCCcCCChHHHHhhhcCCCCc-eeCCCCCCccCChhHHHHHHh
Q psy12030        151 YQCPHCPHRAKHKANLKTHIAPQLGV-FACNVCGKGYRYKTGLYRHKR  197 (245)
Q Consensus       151 ~~C~~C~~~f~~~~~l~~H~~~h~~~-~~C~~C~~~f~~~~~l~~H~~  197 (245)
                      |.|.+||.+..- ..+.+|+-.-++. |.|-.||.+|.. .++..|..
T Consensus         4 FtCnvCgEsvKK-p~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVKK-PQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehhhhhhhccc-cchHHHHHhccCCeeEEeeccccccc-chhhhhhh
Confidence            556666666553 3444455444443 666666666665 34445544

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=85.86  E-value=0.68  Score=31.34  Aligned_cols=15  Identities=20%  Similarity=0.521  Sum_probs=7.1

Q ss_pred             CCccCCCCCCcCCCh
Q psy12030        149 PKYQCPHCPHRAKHK  163 (245)
Q Consensus       149 ~~~~C~~C~~~f~~~  163 (245)
                      .|..|+.||..|.-.
T Consensus        25 ~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   25 DPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCccCCCCCCccCcc
Confidence            344455555544433

The function of members of this family is unknown.

>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]

Probab=85.59  E-value=0.73  Score=36.83  Aligned_cols=79  Identities=14%  Similarity=0.313  Sum_probs=39.6

Q ss_pred             ccccCcCCCccCchhHHHhHHhhhc----------C-CCCCccCCCCCCcCCChHHHHhhhcCCCCceeCCCCCCccCCh
Q psy12030        121 MFACDVCGKEYKYKRGLYRHKKFEC----------G-QEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYK  189 (245)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~~h~----------~-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~  189 (245)
                      |..|+.|+........|.+-...--          + +-+.-.|-.|.-.|.-...-..-..+-.+.|.|+.|...|-..
T Consensus       322 Pi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~d  401 (421)
T COG5151         322 PISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSD  401 (421)
T ss_pred             CccCcchhHHHHHHHHHHHHHHhhccCcccccccCCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhh
Confidence            4567777666555544443322110          1 0112235556555554322111122233447777777777777


Q ss_pred             hHHHHHHhHH
Q psy12030        190 TGLYRHKREE  199 (245)
Q Consensus       190 ~~l~~H~~~h  199 (245)
                      -+...|...|
T Consensus       402 CdvfiHe~Lh  411 (421)
T COG5151         402 CDVFIHETLH  411 (421)
T ss_pred             hHHHHHHHHh
Confidence            7777776655

>KOG4173|consensus

Probab=85.29  E-value=0.3  Score=36.53  Aligned_cols=75  Identities=24%  Similarity=0.448  Sum_probs=51.0

Q ss_pred             ceeccc--ccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHHHhHHhhhcC
Q psy12030         69 GFECQV--CGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFECG  146 (245)
Q Consensus        69 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  146 (245)
                      .+.|++  |...|........|...-|+                           ..|..|.+.|.+...|..|+...|.
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~---------------------------~sCs~C~r~~Pt~hLLd~HI~E~HD  131 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHG---------------------------NSCSFCKRAFPTGHLLDAHILEWHD  131 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhccc---------------------------chhHHHHHhCCchhhhhHHHHHHHH
Confidence            366766  66777777777777666555                           4677888888888888888765432


Q ss_pred             ---------CCCCccCCC--CCCcCCChHHHHhhh
Q psy12030        147 ---------QEPKYQCPH--CPHRAKHKANLKTHI  170 (245)
Q Consensus       147 ---------~~~~~~C~~--C~~~f~~~~~l~~H~  170 (245)
                               +..-|.|-+  |+..|.+...-+.|+
T Consensus       132 s~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~  166 (253)
T KOG4173|consen  132 SLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHM  166 (253)
T ss_pred             HHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHH
Confidence                     133467743  777777777777774

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.19  E-value=0.79  Score=25.34  Aligned_cols=26  Identities=35%  Similarity=0.543  Sum_probs=15.2

Q ss_pred             CCCcccCCCcccCCCh----HHHHHhHhhh
Q psy12030        203 EPKYQCPHCPHKAKHK----ANLKTHIAIK  228 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~----~~l~~H~~~~  228 (245)
                      .....|.+|++.+...    +.|..|++..
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~   43 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKK   43 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHHHHT
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhhhhh
Confidence            5557788888777663    7788887543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=84.35  E-value=0.7  Score=23.69  Aligned_cols=10  Identities=40%  Similarity=1.275  Sum_probs=5.0

Q ss_pred             CcccCCCccc
Q psy12030        205 KYQCPHCPHK  214 (245)
Q Consensus       205 ~~~C~~C~~~  214 (245)
                      +.+|+.||..
T Consensus        17 ~irC~~CG~R   26 (32)
T PF03604_consen   17 PIRCPECGHR   26 (32)
T ss_dssp             TSSBSSSS-S
T ss_pred             cEECCcCCCe
Confidence            4556666544

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=84.23  E-value=1.2  Score=32.42  Aligned_cols=16  Identities=13%  Similarity=0.480  Sum_probs=8.4

Q ss_pred             eeCCCCCCccCChhHH
Q psy12030        177 FACNVCGKGYRYKTGL  192 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l  192 (245)
                      |.|+.|+..|+....+
T Consensus       110 Y~Cp~c~~r~tf~eA~  125 (158)
T TIGR00373       110 FICPNMCVRFTFNEAM  125 (158)
T ss_pred             EECCCCCcEeeHHHHH
Confidence            5555555555544444

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=84.19  E-value=0.6  Score=34.77  Aligned_cols=28  Identities=21%  Similarity=0.746  Sum_probs=16.3

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCccc
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHK  214 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~  214 (245)
                      |.|+.|+..|+....+.          ..|.|+.||-.
T Consensus       118 Y~Cp~C~~rytf~eA~~----------~~F~Cp~Cg~~  145 (178)
T PRK06266        118 FFCPNCHIRFTFDEAME----------YGFRCPQCGEM  145 (178)
T ss_pred             EECCCCCcEEeHHHHhh----------cCCcCCCCCCC
Confidence            66666666666554431          23666666654

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=83.57  E-value=0.83  Score=33.41  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=19.9

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCC
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGR  240 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~  240 (245)
                      -|.|++||..             +-|+.|-.||+||
T Consensus       134 ~~vC~vCGy~-------------~~ge~P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYT-------------HEGEAPEVCPICG  156 (166)
T ss_pred             EEEcCCCCCc-------------ccCCCCCcCCCCC
Confidence            5999999965             4568999999999

>KOG2807|consensus

Probab=83.04  E-value=2.1  Score=34.59  Aligned_cols=23  Identities=13%  Similarity=0.521  Sum_probs=16.8

Q ss_pred             eeCCCCCCccCChhHHHHHHhHH
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h  199 (245)
                      |.|..|...|-..-+...|...|
T Consensus       346 y~C~~Ck~~FCldCDv~iHesLh  368 (378)
T KOG2807|consen  346 YRCESCKNVFCLDCDVFIHESLH  368 (378)
T ss_pred             EEchhccceeeccchHHHHhhhh
Confidence            77777877777777777766555

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=82.74  E-value=1  Score=41.01  Aligned_cols=24  Identities=13%  Similarity=0.115  Sum_probs=15.4

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCCc
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRV  241 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~  241 (245)
                      .....|.+||               ++...|..|+.||-
T Consensus       460 ~~~L~CH~Cg---------------~~~~~p~~Cp~Cgs  483 (730)
T COG1198         460 TGQLRCHYCG---------------YQEPIPQSCPECGS  483 (730)
T ss_pred             CCeeEeCCCC---------------CCCCCCCCCCCCCC
Confidence            3456777777               34456777777773

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=82.09  E-value=1  Score=30.42  Aligned_cols=30  Identities=20%  Similarity=0.532  Sum_probs=22.0

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCCh
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHK  218 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~  218 (245)
                      ..|+.||..|..-           + ..|..||+||..|.-.
T Consensus        10 R~Cp~CG~kFYDL-----------n-k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL-----------N-KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC-----------C-CCCccCCCCCCccCcc
Confidence            5688888887642           2 4678888888887765

The function of members of this family is unknown.

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=82.03  E-value=0.91  Score=35.36  Aligned_cols=26  Identities=15%  Similarity=0.424  Sum_probs=15.9

Q ss_pred             CCCccCCCCCCcCCChHHHHhhhcCC
Q psy12030        148 EPKYQCPHCPHRAKHKANLKTHIAPQ  173 (245)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~l~~H~~~h  173 (245)
                      .+++.|+.|+........|..-.++|
T Consensus       207 ~k~~PCPKCg~et~eTkdLSmStR~h  232 (314)
T PF06524_consen  207 GKPIPCPKCGYETQETKDLSMSTRSH  232 (314)
T ss_pred             CCCCCCCCCCCcccccccceeeeecc
Confidence            35667777776666666665554444

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>smart00614 ZnF_BED BED zinc finger

Probab=81.58  E-value=1.3  Score=25.22  Aligned_cols=21  Identities=29%  Similarity=0.649  Sum_probs=11.3

Q ss_pred             cccCCCcccCCCh-----HHHHHhHh
Q psy12030        206 YQCPHCPHKAKHK-----ANLKTHIA  226 (245)
Q Consensus       206 ~~C~~C~~~f~~~-----~~l~~H~~  226 (245)
                      -.|.+|++.+...     +.|.+|++
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            3455555555433     46666665

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=81.56  E-value=0.39  Score=29.79  Aligned_cols=41  Identities=22%  Similarity=0.428  Sum_probs=25.2

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccC--CCcccCCChHH
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCP--HCPHKAKHKAN  220 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~  220 (245)
                      +.|+.||....-...-.....  .. +.-+.|.  .||.+|.....
T Consensus         2 m~CP~Cg~~a~irtSr~~s~~--~~-~~Y~qC~N~eCg~tF~t~es   44 (72)
T PRK09678          2 FHCPLCQHAAHARTSRYITDT--TK-ERYHQCQNVNCSATFITYES   44 (72)
T ss_pred             ccCCCCCCccEEEEChhcChh--hh-eeeeecCCCCCCCEEEEEEE
Confidence            468888876644444333322  22 6778887  78888876543

>smart00531 TFIIE Transcription initiation factor IIE

Probab=81.52  E-value=0.94  Score=32.60  Aligned_cols=34  Identities=18%  Similarity=0.590  Sum_probs=17.3

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKA  215 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f  215 (245)
                      |.|+.|+..|.....+.. .  . . ...|.||.||...
T Consensus       100 Y~Cp~C~~~y~~~ea~~~-~--d-~-~~~f~Cp~Cg~~l  133 (147)
T smart00531      100 YKCPNCQSKYTFLEANQL-L--D-M-DGTFTCPRCGEEL  133 (147)
T ss_pred             EECcCCCCEeeHHHHHHh-c--C-C-CCcEECCCCCCEE
Confidence            677777766664333221 0  0 1 2236777776543

>PRK04023 DNA polymerase II large subunit; Validated

Probab=80.03  E-value=2.5  Score=39.67  Aligned_cols=9  Identities=33%  Similarity=1.091  Sum_probs=5.6

Q ss_pred             ccCCCCCCc
Q psy12030        151 YQCPHCPHR  159 (245)
Q Consensus       151 ~~C~~C~~~  159 (245)
                      ..|+.||..
T Consensus       627 RfCpsCG~~  635 (1121)
T PRK04023        627 RKCPSCGKE  635 (1121)
T ss_pred             ccCCCCCCc
Confidence            456666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		8e-12
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		5e-05
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		1e-04
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		2e-04
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		4e-04
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		5e-04
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		7e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		9e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 92  ECGQEPKYQCPQCKDSFFS---WSAFHKNLSGM--FACDVCGKEYKYKRGLYRHKKFECG 146
           E G++P Y CP+C  SF      +   +  +G   + C  CGK +  K+ L RH++   G
Sbjct: 16  EPGEKP-YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 147 QEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEP 204
           ++P Y+CP C      +ANL+ H     G   +AC  CGK +     L  H+R   G++P
Sbjct: 75  EKP-YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 205 KYQCPHCPHKAKHKANLKTH 224
            Y+CP C      + NL TH
Sbjct: 134 -YKCPECGKSFSREDNLHTH 152

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 119 SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQL---- 174
           S    C  C K++  K  L  H +   G++P ++CP C      K NL  H A       
Sbjct: 5   SSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 175 -GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS 230
             VF C+VC + +R +  L  H     G+ P Y+C  C  +   K +L++H+   HS
Sbjct: 64  EQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHS 119

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FAC 179
           F C +CGK +K    L  H        P Y C +C  R   K+++K H     G     C
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 180 NVCGKGYRYKTGLYRHKREECG 201
            VCGK +   + L  H R+  G
Sbjct: 61  QVCGKAFSQSSNLITHSRKHTG 82

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 119 SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV-- 176
           S   AC++CGK ++    L RHK    G++P Y CP C  R K K  +  H+    G   
Sbjct: 5   SSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 177 --FACNVCGKGYRYKTGLYRHKRE 198
             + C  CGKG+     L  H ++
Sbjct: 64  KPYICQSCGKGFSRPDHLNGHIKQ 87

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FAC 179
           + C  CGK +     L +H++   G++P Y+CP C       ++L+ H     G   + C
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 180 NVCGKGYRYKTGLYRHKR 197
             CGK +     L RH+R
Sbjct: 64  PECGKSFSRSDHLSRHQR 81

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 148 EPKYQCP--HCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKREECGQE 203
           E  Y CP   C  R   K NL THI    G   F C +C + +   TGL +H R   G++
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 204 PKYQCPHCPHK--AKHKANLKTHIAIKHSD 231
           P + C  C  K    H  +  T I ++  D
Sbjct: 62  P-FACDICGRKFATLHTRDRHTKIHLRQKD 90

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 122 FACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--F 177
           +AC V  C + +     L RH +   GQ+P +QC  C        +L THI    G   F
Sbjct: 5   YACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 178 ACNVCGKGYRYKTGLYRH 195
           AC++CG+ +       RH
Sbjct: 64  ACDICGRKFARSDERKRH 81

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 122 FACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--F 177
           +AC V  C + +     L RH +   GQ+P +QC  C        +L THI    G   F
Sbjct: 5   YACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 178 ACNVCGKGYRYKTGLYRH 195
           AC++CG+ +       RH
Sbjct: 64  ACDICGRKFARSDERKRH 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-07
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-06
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	2e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	2e-04
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.8 bits (114), Expect = 7e-08
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 177 FACNVCGKGYRYKTGLYRHKR---EECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRI 233
             C +CG   R K  L  H+R   E       + C  C  + +   ++  H +  H   +
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPALL 66

Query: 234 LPPQE 238
           L PQE
Sbjct: 67  LAPQE 71

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 6/73 (8%)

Query: 148 EPKYQCPHCPHRAKHKANLKTHI---APQLGV--FACNVCGKGYRYKTGLYRHKREECGQ 202
               QC  C    + KA+L  H    A  +    F C  CGK +     +  H+  +   
Sbjct: 5   SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS-KSHP 63

Query: 203 EPKYQCPHCPHKA 215
                       +
Sbjct: 64  ALLLAPQESSGPS 76

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 9/137 (6%)

Query: 68  KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL---SGM--F 122
           K ++C  CGK +  K+ L RH++   G++P Y+CP+C  SF   +    +    +G   +
Sbjct: 48  KPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKPY 106

Query: 123 ACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACN 180
           AC  CGK +     L  H++   G++P Y+CP C      + NL TH     G   + C 
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165

Query: 181 VCGKGYRYKTGLYRHKR 197
            CGK +  +  L  H+R
Sbjct: 166 ECGKSFSRRDALNVHQR 182

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 28/159 (17%)

Query: 68  KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVC 127
           K + C  CGK +     L  H++   G++P Y+CP+C                       
Sbjct: 20  KPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPEC----------------------- 55

Query: 128 GKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKG 185
           GK +  K+ L RH++   G++P Y+CP C      +ANL+ H     G   +AC  CGK 
Sbjct: 56  GKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKS 114

Query: 186 YRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
           +     L  H+R   G++P Y+CP C      + NL TH
Sbjct: 115 FSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH 152

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 46.3 bits (111), Expect = 5e-07
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG-----V 176
             C  C K++  K  L  H +   G++P ++CP C      K NL  H A         V
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMNRSEQV 66

Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH 224
           F C+VC + +R +  L  H     G+ P Y+C  C  +   K +L++H
Sbjct: 67  FTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 10/110 (9%)

Query: 68  KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAF--HKNLSGM---- 121
            G EC  C K++  K  L  H +   G++P ++CP+C   +F       H+  + M    
Sbjct: 6   SGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMNRSE 64

Query: 122 --FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTH 169
             F C VC + ++ +  L  H     G+ P Y+C  C  +   K +L++H
Sbjct: 65  QVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSH 113

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.9 bits (102), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPK-YQCPHCPHKAKHKANLKTHIAIKH 229
           + C VC + Y + +   RH      +  K Y CP C  +   K N+  H+ I H
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 40.9 bits (97), Expect = 1e-05
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAI 227
             C+ C      K  L  H+R  C   P ++C +C    K  +NL  H+  
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 124 CDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNV 181
           C+VCGK +  K  L  H +   G +P Y+C  C + A   ++L  H+        F C +
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69

Query: 182 CGKGYRYKTGLYRHKREECGQEPKYQC 208
           C    R  + L  H R   G       
Sbjct: 70  CPYASRNSSQLTVHLRSHTGDSG-PSS 95

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 177 FACNVCGKGYRYKTGLYRHKREECGQEPK-YQCPHCPHKAKHKANLKTHIAIKHS 230
           + C +C   +     +  H  ++  +    + CPHC      K++L  H+  +HS
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPK-YQCPHCPHRAKHKANLKTHI 170
           + C +C   +     +  H   +  +    + CPHC      K++L  H+
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 5/110 (4%)

Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG-VFACN 180
               V  +E K    L   +K       K    H P      + L   +A +    F C 
Sbjct: 20  IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLI-HNPQLLDESSYLYRLLASKAISQFVCP 78

Query: 181 VCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS 230
           +C   +     L +H R     E    CP C  +     +   H+  KH+
Sbjct: 79  LCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKHN 125

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAP-QLGVFACN 180
           + C +C  +         H++          CP+C  R       + H +  +     C 
Sbjct: 17  YQCRLCNAKLSSLLEQGSHERL---CRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73

Query: 181 VCGKGYRYKTGLYRHKRE 198
            C + ++    ++RH+ E
Sbjct: 74  ECMRTFKSSFSIWRHQVE 91

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 68  KGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLS----GMFA 123
           + ++C++C  +         H++          CP C   FFS     ++ S        
Sbjct: 15  EVYQCRLCNAKLSSLLEQGSHER---LCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLT 71

Query: 124 CDVCGKEYKYKRGLYRHKK 142
           C  C + +K    ++RH+ 
Sbjct: 72  CLECMRTFKSSFSIWRHQV 90

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 96

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 173 QLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR 232
             G  +C  C    R      +   E C QE  + C HC  + +  A +K H+   H+  
Sbjct: 31  DKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMANHNSL 89

Query: 233 ILPPQEG 239
              P  G
Sbjct: 90  PSGPSSG 96

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 9e-04
 Identities = 33/201 (16%), Positives = 54/201 (26%), Gaps = 50/201 (24%)

Query: 1   MDMSVSSTGQQYNKIMPVCLYAMFVE----KSTNTKMEFIAIRNSNVDKSLNT-NVLNAH 55
           MD        QY  I+ V   A FV+    K      + I +    +D  + + + ++  
Sbjct: 7   MDFETGEHQYQYKDILSVFEDA-FVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGT 64

Query: 56  GFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFH 115
               W L+ +  +  +  V                 E      Y+        F  S   
Sbjct: 65  LRLFWTLLSKQEEMVQKFV-----------------EEVLRINYK--------FLMSPIK 99

Query: 116 KNLSGMFACDVCGKEYKYKRGLYRHKKFECGQE-PKYQCPHCPHRAKHKANLKTHIA--- 171
                            Y     R + +   Q   KY       R +    L+  +    
Sbjct: 100 TEQR-----QPSMMTRMYIE--QRDRLYNDNQVFAKYNVS----RLQPYLKLRQALLELR 148

Query: 172 PQLGVFACNVCGKGYRYKTGL 192
           P   V    V G G   KT +
Sbjct: 149 PAKNVLIDGVLGSG---KTWV 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.93
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.93
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.92
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.88
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.86
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.85
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.85
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.84
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.82
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.81
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.79
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.78
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.76
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.76
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.76
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.76
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.75
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.74
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.74
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.73
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.71
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.69
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.68
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.68
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.66
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.66
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.66
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.66
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.66
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.65
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.65
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.64
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.63
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.63
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.62
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.6
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.6
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.6
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.58
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.57
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.57
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.57
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.56
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.56
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.54
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.54
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.52
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.51
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.51
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.51
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.51
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.51
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.48
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.47
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.45
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.45
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.45
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.45
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.44
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.44
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.44
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.43
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.43
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.43
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.43
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.43
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.43
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.43
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.42
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.42
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.42
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.42
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.42
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.42
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.42
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.42
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.42
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.42
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.42
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.42
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.42
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.41
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.41
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.41
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.41
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.41
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.4
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.4
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.4
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.39
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.39
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.38
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.38
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.38
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.37
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.37
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.37
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.34
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.34
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.34
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.34
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.34
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.33
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.33
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.32
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.32
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.31
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.31
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.3
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.28
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.28
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.28
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.27
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.27
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.25
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.23
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.22
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.21
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.21
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.17
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.16
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.15
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.15
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.13
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.13
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.12
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.12
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.12
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.1
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.1
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.09
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.06
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.03
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.02
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.01
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.01
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.99
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.99
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.98
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.97
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.97
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.96
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.96
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.93
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.92
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.92
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.92
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.91
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.91
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.91
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.89
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.89
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.89
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.88
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.85
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.85
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.84
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.8
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.79
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.75
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.74
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.71
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.7
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.65
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.63
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.62
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.62
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.61
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.59
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.59
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.58
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.57
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.56
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.56
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.55
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.55
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.54
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.53
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.53
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.52
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.89
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.89
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.48
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.46
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.45
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.44
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.42
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.68
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.31
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.26
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.23
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.21
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.21
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.2
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.2
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.2
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.2
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.19
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.16
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.13
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.13
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.12
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.11
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.1
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.07
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.07
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.31
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.02
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.01
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.98
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.19
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.93
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.16
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.84
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.75
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.59
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.01
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.96
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.85
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.81
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.93
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.73
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.96
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.88
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.85
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.55
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	92.17
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	90.93
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	90.05
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	89.99
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	89.52
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	89.12
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	88.48
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.75
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	85.94
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	85.68
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	85.38
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	84.85
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	83.92
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	82.8
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	82.8
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	82.46
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	81.77
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	81.22

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=1.7e-40  Score=250.60  Aligned_cols=178  Identities=26%  Similarity=0.602  Sum_probs=139.2

Q ss_pred             cCCCCCccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhc-----CCccccCcCC
Q psy12030         54 AHGFNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL-----SGMFACDVCG  128 (245)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~-----~~~~~C~~C~  128 (245)
                      ...+..|..++.++++|.|+.|++.|.+...|..|++.|++ +++|.|+.|++.|.+...|..|+     .++|.|..|+
T Consensus         6 ~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   84 (190)
T 2i13_A            6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTG-EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECG   84 (190)
T ss_dssp             -------------------------CCSSHHHHHGGGCC----CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             hccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCC-CCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccC
Confidence            34566777888899999999999999999999999999988 88999999999999999998887     4689999999


Q ss_pred             CccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCc
Q psy12030        129 KEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKY  206 (245)
Q Consensus       129 ~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  206 (245)
                      +.|.+...|..|++.|++ +++|.|+.|++.|.+...|..|++.|.+  +|.|++|++.|.....|..|+++|++ ++||
T Consensus        85 ~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~-~~~~  162 (190)
T 2i13_A           85 KSFSQRANLRAHQRTHTG-EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG-EKPY  162 (190)
T ss_dssp             CEESCHHHHHHHHHHHHT-CCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC-CCCE
T ss_pred             CccCCHHHHHHHHHhcCC-CCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCC-CCCe
Confidence            999999999999999999 8999999999999999999999999876  49999999999999999999999999 9999


Q ss_pred             ccCCCcccCCChHHHHHhHhhhCCCCCC
Q psy12030        207 QCPHCPHKAKHKANLKTHIAIKHSDRIL  234 (245)
Q Consensus       207 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~  234 (245)
                      .|++|++.|.....|..|+++|+|++||
T Consensus       163 ~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          163 KCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             ECTTTCCEESSHHHHHHHHTTC------
T ss_pred             ECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            9999999999999999999999999986

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=1.6e-36  Score=228.80  Aligned_cols=161  Identities=29%  Similarity=0.575  Sum_probs=130.0

Q ss_pred             hhHHhcchhcccCCCCCccCCCCcccccChHHHHHhc-----CCccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCC
Q psy12030         82 KRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL-----SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHC  156 (245)
Q Consensus        82 ~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~-----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  156 (245)
                      ...|..|+..+.+ +++|.|+.|++.|.+...|..|+     .++|.|..|++.|.+...|..|++.|++ +++|.|+.|
T Consensus         6 ~~~l~~h~~~~~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C   83 (190)
T 2i13_A            6 SSSSVAQAALEPG-EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG-EKPYKCPEC   83 (190)
T ss_dssp             --------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHC-CCCEECTTT
T ss_pred             hccchhhhhhcCC-CCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCC-CCCccCccc
Confidence            4578889998877 89999999999999999999998     3589999999999999999999999999 899999999


Q ss_pred             CCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCC
Q psy12030        157 PHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRIL  234 (245)
Q Consensus       157 ~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  234 (245)
                      ++.|.+...|..|++.|.+  +|.|++|++.|.+...|..|+++|++ ++||.|++|++.|...+.|..|+++|++++||
T Consensus        84 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  162 (190)
T 2i13_A           84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG-EKPYKCPECGKSFSREDNLHTHQRTHTGEKPY  162 (190)
T ss_dssp             CCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHC-CCCEECTTTCCEESCHHHHHHHHHHHHCCCCE
T ss_pred             CCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCC-CCCeECCCCCcccCCHHHHHHHHHhcCCCCCe
Confidence            9999999999999998875  49999999999999999999999999 99999999999999999999999999999999


Q ss_pred             CCCCCCccccC
Q psy12030        235 PPQEGRVWTRA  245 (245)
Q Consensus       235 ~C~~C~~~f~~  245 (245)
                      .|++|++.|..
T Consensus       163 ~C~~C~~~f~~  173 (190)
T 2i13_A          163 KCPECGKSFSR  173 (190)
T ss_dssp             ECTTTCCEESS
T ss_pred             ECCCCCCccCC
Confidence            99999999963

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=100.00  E-value=1.3e-32  Score=207.41  Aligned_cols=163  Identities=26%  Similarity=0.515  Sum_probs=139.5

Q ss_pred             ccCCCceec--ccccccccChhHHhcchhcccCCCCCccC--CCCcccccChHHHHHhcC-----CccccC--cCCCccC
Q psy12030         64 QQYSKGFEC--QVCGKRYKYKRGLHRHKQDECGQEPKYQC--PQCKDSFFSWSAFHKNLS-----GMFACD--VCGKEYK  132 (245)
Q Consensus        64 ~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~C--~~C~~~f~~~~~l~~h~~-----~~~~C~--~C~~~f~  132 (245)
                      ....++|.|  +.||+.|.+...|..|++.|.+ +++|.|  +.|++.|.+...|..|+.     ++|.|.  .|++.|.
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   85 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTG-EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFT   85 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHC-CCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEES
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCC-CCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccC
Confidence            344678999  6899999999999999999988 889999  789999999999988873     478999  8999999


Q ss_pred             chhHHHhHH-hhhcCCCCCccC--CCCCCcCCChHHHHhhhcCCCC--ceeCCC--CCCccCChhHHHHHHhHHhCCCCC
Q psy12030        133 YKRGLYRHK-KFECGQEPKYQC--PHCPHRAKHKANLKTHIAPQLG--VFACNV--CGKGYRYKTGLYRHKREECGQEPK  205 (245)
Q Consensus       133 ~~~~l~~H~-~~h~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~--~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~  205 (245)
                      +...|..|+ +.|...+++|.|  +.|++.|.+...|..|+++|++  +|.|++  |++.|...+.|..|+++|++    
T Consensus        86 ~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~----  161 (190)
T 1tf6_A           86 TKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----  161 (190)
T ss_dssp             CHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS----
T ss_pred             CHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC----
Confidence            999999998 445334788999  8899999999999999998886  499977  99999999999999998866    


Q ss_pred             cccCC---CcccCCChHHHHHhHhhhCCC
Q psy12030        206 YQCPH---CPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       206 ~~C~~---C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      |.|+.   |++.|.....|..|+++|+++
T Consensus       162 ~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          162 YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            88988   999999999999999998875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=4.3e-30  Score=193.55  Aligned_cols=145  Identities=26%  Similarity=0.534  Sum_probs=135.0

Q ss_pred             CCCccC--CCCcccccChHHHHHhc-----CCcccc--CcCCCccCchhHHHhHHhhhcCCCCCccCC--CCCCcCCChH
Q psy12030         96 EPKYQC--PQCKDSFFSWSAFHKNL-----SGMFAC--DVCGKEYKYKRGLYRHKKFECGQEPKYQCP--HCPHRAKHKA  164 (245)
Q Consensus        96 ~~~~~C--~~C~~~f~~~~~l~~h~-----~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~  164 (245)
                      .++|.|  +.|++.|.+...|..|+     .++|.|  ..|++.|.+...|..|+++|++ +++|.|+  .|++.|.+..
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~   88 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG-EKNFTCDSDGCDLRFTTKA   88 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTT-CCCEECCSSSCCCEESCHH
T ss_pred             CcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccC-CCceeCCCCCCCCccCCHH
Confidence            678999  68999999999998887     568999  8899999999999999999998 8999999  8999999999


Q ss_pred             HHHhhh-cCCC-C--ceeC--CCCCCccCChhHHHHHHhHHhCCCCCcccCC--CcccCCChHHHHHhHhhhCCCCCCCC
Q psy12030        165 NLKTHI-APQL-G--VFAC--NVCGKGYRYKTGLYRHKREECGQEPKYQCPH--CPHKAKHKANLKTHIAIKHSDRILPP  236 (245)
Q Consensus       165 ~l~~H~-~~h~-~--~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C  236 (245)
                      .|..|+ +.|. +  +|.|  +.|++.|...+.|..|+++|++ ++||.|++  |++.|...+.|..|+++|++   |.|
T Consensus        89 ~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C  164 (190)
T 1tf6_A           89 NMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC  164 (190)
T ss_dssp             HHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSS-SCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCC
T ss_pred             HHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCC-CCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcC
Confidence            999999 6663 2  5999  8999999999999999999998 99999988  99999999999999999998   999


Q ss_pred             CC---CCccccC
Q psy12030        237 QE---GRVWTRA  245 (245)
Q Consensus       237 ~~---C~~~f~~  245 (245)
                      .+   |++.|..
T Consensus       165 ~~~~~C~~~f~~  176 (190)
T 1tf6_A          165 KKDDSCSFVGKT  176 (190)
T ss_dssp             CSTTTCCCCCSC
T ss_pred             CCCCcCCCcccc
Confidence            99   9999964

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.97  E-value=1.9e-30  Score=189.23  Aligned_cols=142  Identities=21%  Similarity=0.445  Sum_probs=131.1

Q ss_pred             CceecccccccccChhHHhcchh---cccCCCCCccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHHHhHHhhh
Q psy12030         68 KGFECQVCGKRYKYKRGLHRHKQ---DECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFE  144 (245)
Q Consensus        68 ~~~~C~~C~~~f~~~~~l~~H~~---~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h  144 (245)
                      .+|.|+.|++.|.+...|..|++   .|.+ +++|.|++|+                  |..|++.|.+...|..|++.|
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~-~~~~~C~~c~------------------C~~c~~~f~~~~~l~~H~~~h   62 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGE-RKEFVCHWGG------------------CSRELRPFKAQYMLVVHMRRH   62 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSC-SSCCCCCBTT------------------CTTTTCCCSSHHHHHHHTHHH
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCC-CcceeCCCCC------------------ccchhhhhhhHHHHHHHHHhc
Confidence            47899999999999999999998   4544 7889998765                  778999999999999999999


Q ss_pred             cCCCCCccCCC--CCCcCCChHHHHhhhcCCCC--ceeCCC--CCCccCChhHHHHHH-hHHhCCCCCcccCC--CcccC
Q psy12030        145 CGQEPKYQCPH--CPHRAKHKANLKTHIAPQLG--VFACNV--CGKGYRYKTGLYRHK-REECGQEPKYQCPH--CPHKA  215 (245)
Q Consensus       145 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~--~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~~C~~--C~~~f  215 (245)
                      ++ +++|.|++  |++.|.+...|..|++.|.+  +|.|++  |++.|.+.+.|..|+ ++|.+ ++||.|++  |++.|
T Consensus        63 ~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~-~~~~~C~~~~C~~~f  140 (155)
T 2gli_A           63 TG-EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN-EKPYVCKLPGCTKRY  140 (155)
T ss_dssp             HC-CCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCS-CCCEECCSTTTCCEE
T ss_pred             CC-CCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCC-CCCeeCCCCCCcccc
Confidence            99 89999985  99999999999999999986  499998  999999999999999 77877 99999998  99999


Q ss_pred             CChHHHHHhHhhhCC
Q psy12030        216 KHKANLKTHIAIKHS  230 (245)
Q Consensus       216 ~~~~~l~~H~~~~~~  230 (245)
                      ...+.|..|+++|||
T Consensus       141 ~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          141 TDPSSLRKHVKTVHG  155 (155)
T ss_dssp             SSHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHhhcC
Confidence            999999999999986

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=2.5e-26  Score=167.31  Aligned_cols=123  Identities=20%  Similarity=0.331  Sum_probs=112.4

Q ss_pred             ccccCcCCCccCchhHHHhHHh---hhcCCCCCccCCC-----CCCcCCChHHHHhhhcCCCC--ceeCCC--CCCccCC
Q psy12030        121 MFACDVCGKEYKYKRGLYRHKK---FECGQEPKYQCPH-----CPHRAKHKANLKTHIAPQLG--VFACNV--CGKGYRY  188 (245)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~---~h~~~~~~~~C~~-----C~~~f~~~~~l~~H~~~h~~--~~~C~~--C~~~f~~  188 (245)
                      +|.|..|++.|.+...|..|++   .|.+ +++|.|++     |++.|.+...|..|++.|.+  +|.|++  |++.|..
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~-~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   81 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGE-RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR   81 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSC-SSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSS
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCC-CcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccC
Confidence            5889999999999999999998   4555 88998875     35999999999999999876  599985  9999999


Q ss_pred             hhHHHHHHhHHhCCCCCcccCC--CcccCCChHHHHHhH-hhhCCCCCCCCCC--CCccccC
Q psy12030        189 KTGLYRHKREECGQEPKYQCPH--CPHKAKHKANLKTHI-AIKHSDRILPPQE--GRVWTRA  245 (245)
Q Consensus       189 ~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~~~~~~~~C~~--C~~~f~~  245 (245)
                      ...|..|+++|++ ++||.|++  |++.|.+.+.|..|+ ++|.+++||.|++  |++.|..
T Consensus        82 ~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~  142 (155)
T 2gli_A           82 LENLKTHLRSHTG-EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD  142 (155)
T ss_dssp             HHHHHHHHHHTTT-CCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESS
T ss_pred             HHHHHHHHHHcCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCC
Confidence            9999999999988 99999998  999999999999999 8999999999998  9999963

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.93  E-value=7.3e-26  Score=164.84  Aligned_cols=117  Identities=26%  Similarity=0.478  Sum_probs=106.9

Q ss_pred             CccccCcCCCccCchhHHHhHHhhhcCCCCC--------ccCCCCCCcCCChHHHHhhhcCCCC--ceeCCC--CCCccC
Q psy12030        120 GMFACDVCGKEYKYKRGLYRHKKFECGQEPK--------YQCPHCPHRAKHKANLKTHIAPQLG--VFACNV--CGKGYR  187 (245)
Q Consensus       120 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~--C~~~f~  187 (245)
                      ..|.|..|++.|.+...|..|++.++..+.+        |.|++|++.|.+...|..|++.|.+  +|.|.+  |++.|.
T Consensus        24 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~  103 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFA  103 (155)
T ss_dssp             CSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEES
T ss_pred             cccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccC
Confidence            3588999999999999999999984442544        8999999999999999999999875  499998  999999


Q ss_pred             ChhHHHHHHhHHhCCCCCcccCC--CcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        188 YKTGLYRHKREECGQEPKYQCPH--CPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       188 ~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      ....|..|+++|++ ++||.|++  |++.|...+.|..|+++|++++||.|.
T Consensus       104 ~~~~L~~H~~~h~~-~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          104 RSENLKIHKRTHTG-EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CHHHHHHHHTTTCS-SCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CHHHHHHHHHhhCC-CCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999998 99999997  999999999999999999999999996

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.93  E-value=5.9e-27  Score=165.62  Aligned_cols=104  Identities=20%  Similarity=0.322  Sum_probs=85.1

Q ss_pred             hHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCC
Q psy12030        139 RHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAK  216 (245)
Q Consensus       139 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~  216 (245)
                      .|.++|.| +++|.|++|++.|.+...|..|+++|++  +|.|++|+++|...+.|..|+++|++ ++||.|++||+.|.
T Consensus        12 h~~~~h~G-ek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C~k~F~   89 (133)
T 2lt7_A           12 HYELIVDG-RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG-ERRYQCLACGKSFI   89 (133)
T ss_dssp             EEEEEETT-EEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHT-CCCEEESSSCCEES
T ss_pred             hceeecCC-CcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCC-CccccCCCCCCCcC
Confidence            34455666 7888888888888888888888888865  48888888888888888888888888 88888988998888


Q ss_pred             ChHHHHHhHhhhCCCC------CCCCCCCCcccc
Q psy12030        217 HKANLKTHIAIKHSDR------ILPPQEGRVWTR  244 (245)
Q Consensus       217 ~~~~l~~H~~~~~~~~------~~~C~~C~~~f~  244 (245)
                      ..+.|..|+++||+++      +|.|.+|++.|.
T Consensus        90 ~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~  123 (133)
T 2lt7_A           90 NYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQI  123 (133)
T ss_dssp             SHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCC
T ss_pred             CHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhh
Confidence            8888988988888764      477888887764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=4.3e-25  Score=154.64  Aligned_cols=110  Identities=31%  Similarity=0.581  Sum_probs=101.2

Q ss_pred             CccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcC---CCC--ceeCCCCCCccCChhHHHH
Q psy12030        120 GMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAP---QLG--VFACNVCGKGYRYKTGLYR  194 (245)
Q Consensus       120 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~--~~~C~~C~~~f~~~~~l~~  194 (245)
                      ++|.|..|++.|.+...|..|++.|++ +++|.|+.|++.|.+...|..|+..   +.+  +|.|++|++.|.....|..
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~   84 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRKHTG-EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRL   84 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHHHSS-CCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHH
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHhCCC-CCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHH
Confidence            358899999999999999999999998 8999999999999999999999874   333  4999999999999999999


Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      |+++|++ ++||.|++|++.|.....|..|++.+|+.
T Consensus        85 H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           85 HMVSHTG-EMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHHHSS-SCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             HHHHcCC-CCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            9999998 99999999999999999999999866544

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.92  E-value=2.5e-25  Score=155.90  Aligned_cols=113  Identities=27%  Similarity=0.531  Sum_probs=100.2

Q ss_pred             CccccC--cCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCC--CCCccCChhHHH
Q psy12030        120 GMFACD--VCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNV--CGKGYRYKTGLY  193 (245)
Q Consensus       120 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~--C~~~f~~~~~l~  193 (245)
                      ++|.|+  .|++.|.+...|..|+++| + +++|.|++|++.|.+...|..|++.|.+  +|.|.+  |++.|.....|.
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h-~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHTH-G-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGGG-S-CCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHHc-C-CCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            358888  8999999999999999988 6 8899999999999999999999999986  499986  999999999999


Q ss_pred             HHHhHHhCCCCCcccC--CCcccCCChHHHHHhHhhhCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCP--HCPHKAKHKANLKTHIAIKHSDRILP  235 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~  235 (245)
                      .|+++|++ +++|.|+  .|++.|.+.+.|..|+++|++++++.
T Consensus        82 ~H~~~h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C           82 THVRIHTG-DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             HHHHHHHC-CCCCCCCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred             HHHHHhCC-CCceECCCCCCCCccCCHHHHHHHHHHHcccccCC
Confidence            99999999 9999996  59999999999999999999998763

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=7.8e-25  Score=152.21  Aligned_cols=107  Identities=30%  Similarity=0.606  Sum_probs=100.0

Q ss_pred             CccccCc--CCCccCchhHHHhHHhhhcCCCCCccCC--CCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHH
Q psy12030        120 GMFACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCP--HCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLY  193 (245)
Q Consensus       120 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~  193 (245)
                      ++|.|.+  |++.|.+...|..|++.|++ +++|.|+  .|++.|.+...|..|++.|.+  +|.|++|++.|.....|.
T Consensus         5 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   83 (119)
T 2jp9_A            5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTG-EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK   83 (119)
T ss_dssp             CCBCCCSTTSCCCBSCHHHHHHHHHHHHT-TCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHH
T ss_pred             eeeeCCCCCCcchhCCHHHHHHHHHhhCC-CCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHH
Confidence            4688886  99999999999999999998 8999999  799999999999999998876  499999999999999999


Q ss_pred             HHHhHHhCCCCCccc--CCCcccCCChHHHHHhHhhh
Q psy12030        194 RHKREECGQEPKYQC--PHCPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~  228 (245)
                      .|+++|++ +++|.|  +.||+.|.+.+.|..|+++|
T Consensus        84 ~H~~~h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           84 THTRTHTG-EKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHT-CCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHhcC-CCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            99999999 999999  89999999999999999876

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.91  E-value=3.3e-24  Score=156.01  Aligned_cols=129  Identities=21%  Similarity=0.369  Sum_probs=112.6

Q ss_pred             ccCCCceecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHHHhHHhh
Q psy12030         64 QQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKF  143 (245)
Q Consensus        64 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H~~~  143 (245)
                      ...+..|.|..|++.|.+...|..|++.+|..+.+.....|               ..|.|..|++.|.+...|..|+++
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~---------------~~~~C~~C~~~f~~~~~l~~H~~~   84 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC---------------YWEECPREGKSFKAKYKLVNHIRV   84 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCC---------------CBTTCTTSSCCCSSHHHHHHHTHH
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccc---------------cccCCCCcccccCCHHHHHHHHHh
Confidence            34567899999999999999999999985543543332222               237899999999999999999999


Q ss_pred             hcCCCCCccCCC--CCCcCCChHHHHhhhcCCCC--ceeCCC--CCCccCChhHHHHHHhHHhCCCCCcccC
Q psy12030        144 ECGQEPKYQCPH--CPHRAKHKANLKTHIAPQLG--VFACNV--CGKGYRYKTGLYRHKREECGQEPKYQCP  209 (245)
Q Consensus       144 h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~--~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~  209 (245)
                      |++ +++|.|++  |++.|.....|..|++.|.+  +|.|.+  |++.|.....|..|+++|++ ++||.|+
T Consensus        85 h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~k~~~c~  154 (155)
T 2rpc_A           85 HTG-EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS-DKSGPSS  154 (155)
T ss_dssp             HHC-CCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTS-CCCSCSC
T ss_pred             cCC-CCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcC-CCCCCCC
Confidence            999 89999998  99999999999999999987  499997  99999999999999999999 9999985

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=4.6e-24  Score=150.71  Aligned_cols=109  Identities=22%  Similarity=0.410  Sum_probs=65.2

Q ss_pred             CCccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHH
Q psy12030         58 NIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGL  137 (245)
Q Consensus        58 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l  137 (245)
                      ..+..++.|+++|.|++||+.|.....|..|+++|.+ +++                       |.|.+|++.|.+...|
T Consensus        11 ~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~-~k~-----------------------~~C~~C~k~F~~~~~L   66 (133)
T 2lt7_A           11 DHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSW-EKK-----------------------YPCRYCEKVFPLAEYR   66 (133)
T ss_dssp             SEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHC-CSC-----------------------EECSSSSCEESSHHHH
T ss_pred             hhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCC-CCC-----------------------eeCCccCeecccccch
Confidence            3345556666666666666666666666666666655 433                       4444455555566666


Q ss_pred             HhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCCceeCCCCCCccCChhHHHHHHhHHhCC-----CCCcccCCCc
Q psy12030        138 YRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQ-----EPKYQCPHCP  212 (245)
Q Consensus       138 ~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----~~~~~C~~C~  212 (245)
                      ..|+++|++ +++                          |.|++||++|...+.|..|+++|++.     .++|+|.+|+
T Consensus        67 ~~H~~~H~~-~k~--------------------------~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~  119 (133)
T 2lt7_A           67 TKHEIHHTG-ERR--------------------------YQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCR  119 (133)
T ss_dssp             HHHHHHHHT-CCC--------------------------EEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCC
T ss_pred             hhhccccCC-Ccc--------------------------ccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCC
Confidence            666666655 444                          55555666666666666666666551     2457777777


Q ss_pred             ccCCC
Q psy12030        213 HKAKH  217 (245)
Q Consensus       213 ~~f~~  217 (245)
                      +.|..
T Consensus       120 k~~~~  124 (133)
T 2lt7_A          120 SLQIR  124 (133)
T ss_dssp             SSCCC
T ss_pred             chhhh
Confidence            76653

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=2.7e-23  Score=145.42  Aligned_cols=112  Identities=28%  Similarity=0.565  Sum_probs=87.2

Q ss_pred             cCCCceecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHHHhHHhhh
Q psy12030         65 QYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFE  144 (245)
Q Consensus        65 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h  144 (245)
                      +++++|.|++|++.|.+...|..|++.|++ +++                       |.|..|++.|.+...|..|++.+
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~-----------------------~~C~~C~~~f~~~~~l~~H~~~~   58 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTG-EKP-----------------------FECPKCGKCYFRKENLLEHEARN   58 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSS-CCS-----------------------CBCTTTCCBCSSHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCC-CCC-----------------------eECCCCCchhcCHHHHHHHHhhh
Confidence            456789999999999999999999999987 555                       55556666677777777777653


Q ss_pred             ---cCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        145 ---CGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       145 ---~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                         .+ +++|.|++|++.|.+...|..|++.|.+  +|.|++|++.|.....|..|++..|+
T Consensus        59 ~~~~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           59 CMNRS-EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             CCCSC-CCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             hcCCC-CCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCC
Confidence               33 6778888888888888888888877765  38888888888888888888875444

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.88  E-value=3.1e-23  Score=145.21  Aligned_cols=113  Identities=26%  Similarity=0.536  Sum_probs=94.0

Q ss_pred             CCceecc--cccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHHHhHHhhh
Q psy12030         67 SKGFECQ--VCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFE  144 (245)
Q Consensus        67 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h  144 (245)
                      +++|.|+  .|++.|.+...|..|++.| + +++                       |.|..|++.|.+...|..|++.|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~-~~~-----------------------~~C~~C~~~f~~~~~l~~H~~~h   57 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-G-PRV-----------------------HVCAECGKAFVESSKLKRHQLVH   57 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-S-CCC-----------------------EECTTTCCEESSHHHHHHHGGGT
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-C-CCC-----------------------eECCCCCchhCCHHHHHHHHHHc
Confidence            4679999  8999999999999999988 4 443                       67777888888999999999999


Q ss_pred             cCCCCCccCCC--CCCcCCChHHHHhhhcCCCC--ceeCC--CCCCccCChhHHHHHHhHHhCCCCCc
Q psy12030        145 CGQEPKYQCPH--CPHRAKHKANLKTHIAPQLG--VFACN--VCGKGYRYKTGLYRHKREECGQEPKY  206 (245)
Q Consensus       145 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~--~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~  206 (245)
                      ++ +++|.|+.  |++.|.+...|..|++.|.+  +|.|+  .|++.|...+.|..|+++|++ ++++
T Consensus        58 ~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~-~k~~  123 (124)
T 1ubd_C           58 TG-EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK-AKNN  123 (124)
T ss_dssp             SC-CCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred             CC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc-cccC
Confidence            88 88999976  99999999999999998876  49995  599999999999999999988 7765

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.88  E-value=3.7e-23  Score=143.66  Aligned_cols=110  Identities=29%  Similarity=0.609  Sum_probs=89.1

Q ss_pred             cCCCceeccc--ccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccC--cCCCccCchhHHHhH
Q psy12030         65 QYSKGFECQV--CGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACD--VCGKEYKYKRGLYRH  140 (245)
Q Consensus        65 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~--~C~~~f~~~~~l~~H  140 (245)
                      +++++|.|.+  |++.|.+...|..|++.|.+ +++                       |.|.  .|++.|.+...|..|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~-----------------------~~C~~~~C~~~f~~~~~l~~H   57 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTG-EKP-----------------------YQCDFKDCERRFSRSDQLKRH   57 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHT-TCC-----------------------EECCSTTCCCEESSHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCC-CCC-----------------------ccCCCCCCcCccCCHHHHHHH
Confidence            3567899997  99999999999999999887 555                       5555  577777788888888


Q ss_pred             HhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCCc--eeC--CCCCCccCChhHHHHHHhHH
Q psy12030        141 KKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FAC--NVCGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       141 ~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~C--~~C~~~f~~~~~l~~H~~~h  199 (245)
                      ++.|++ +++|.|++|++.|.+...|..|++.|.+.  |.|  +.|++.|...+.|..|+++|
T Consensus        58 ~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           58 QRRHTG-VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHC-CCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHcCC-CCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            888877 77888888888888888888888877653  888  77888888888888888765

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=1.3e-22  Score=138.39  Aligned_cols=96  Identities=16%  Similarity=0.268  Sum_probs=88.6

Q ss_pred             HHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCCceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChH
Q psy12030        140 HKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKA  219 (245)
Q Consensus       140 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~  219 (245)
                      +++.|.+ +++|.|++|++.|.....|..|++.|.++|.|.+|++.|.....|..|++ |++ ++||.|++|++.|....
T Consensus         7 ~~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~-H~~-~~~~~C~~C~~~f~~~~   83 (107)
T 1wjp_A            7 GASPVEN-KEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES-KCE-YKKLTCLECMRTFKSSF   83 (107)
T ss_dssp             CCCCCCC-CCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHH-HCS-TGGGEEGGGTEECSSHH
T ss_pred             cCcccCC-CcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHH-cCC-CCCccCccccchhCCHH
Confidence            4566777 89999999999999999999999999888999999999999999999995 877 99999999999999999


Q ss_pred             HHHHhHh-hhCCCCCCCCCC
Q psy12030        220 NLKTHIA-IKHSDRILPPQE  238 (245)
Q Consensus       220 ~l~~H~~-~~~~~~~~~C~~  238 (245)
                      .|..|++ +|.++++|.+.-
T Consensus        84 ~L~~H~~~~H~~~~~~~~~~  103 (107)
T 1wjp_A           84 SIWRHQVEVHNQNNMAPTSG  103 (107)
T ss_dssp             HHHHHHHHTSCCCCCCCCCC
T ss_pred             HHHHHHHHHcCCCCCCCCCC
Confidence            9999997 888999998863

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=9.4e-23  Score=140.86  Aligned_cols=104  Identities=15%  Similarity=0.205  Sum_probs=93.2

Q ss_pred             hhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcC--CCC--c-eeCCCCCCcc--CChhHHHHHHhHHhCCCCCc
Q psy12030        134 KRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAP--QLG--V-FACNVCGKGY--RYKTGLYRHKREECGQEPKY  206 (245)
Q Consensus       134 ~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~--~-~~C~~C~~~f--~~~~~l~~H~~~h~~~~~~~  206 (245)
                      ...|..|+++|++ +++|.|++|++.|.+...|..|++.  |.+  + +.|++|++.|  .....|..|+++|++ ++||
T Consensus         4 ~~~l~~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~-~~~~   81 (115)
T 2dmi_A            4 GSSGKLYGSIFTG-ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA-QKVL   81 (115)
T ss_dssp             CCCCCCCCCCCCC-CCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCC-CSSC
T ss_pred             chhhhhheeeeCC-CCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCC-Ccce
Confidence            4568889999988 8999999999999999999999987  543  2 5699999999  999999999999988 9999


Q ss_pred             ccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        207 QCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       207 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|++|++.|...+.|..|+++||.......+..
T Consensus        82 ~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~s  114 (115)
T 2dmi_A           82 KCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS  114 (115)
T ss_dssp             BCSSSCCBCSSHHHHHHHHHHTTTTTCSCCCCC
T ss_pred             ECCCCCCccCCHHHHHHHHHHhCCcccCCCCCC
Confidence            999999999999999999999998887776654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.85  E-value=3e-21  Score=131.26  Aligned_cols=89  Identities=18%  Similarity=0.419  Sum_probs=74.9

Q ss_pred             CCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhH
Q psy12030        148 EPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHI  225 (245)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~  225 (245)
                      +++|.|++|++.|.+...|..|++.|.+  +|.|++|++.|.....|..|+++|++ +++|.|++|++.|.....|..|+
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~L~~H~   93 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK-EKPFKCQECGKGFCQSRTLAVHK   93 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCC-CCTTSCSSSCCCCSSHHHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCC-CCCeECCCcCCcccCHHHHHHHH
Confidence            5667777777777777777777776654  48888888999999999999999888 89999999999999999999999


Q ss_pred             hhhCCCCCCCCC
Q psy12030        226 AIKHSDRILPPQ  237 (245)
Q Consensus       226 ~~~~~~~~~~C~  237 (245)
                      ++|++++||.++
T Consensus        94 ~~H~~~~~~~~~  105 (106)
T 2ee8_A           94 TLHMQTSSPTAA  105 (106)
T ss_dssp             HHTTSCCCCCCC
T ss_pred             HHhCCCCCCcCC
Confidence            999999998764

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=6.1e-21  Score=127.34  Aligned_cols=88  Identities=23%  Similarity=0.462  Sum_probs=81.7

Q ss_pred             CCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHh
Q psy12030        147 QEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH  224 (245)
Q Consensus       147 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H  224 (245)
                      .+++|.|++|++.|.+...|..|++.|.+  +|.|++|++.|.....|..|+++|++ +++|.|++|++.|.....|..|
T Consensus         5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H   83 (96)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD-ERPFKCQICPYASRNSSQLTVH   83 (96)
T ss_dssp             CCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCC-CCCEECSSSSCEESSHHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCC-CCCccCCCCCCccCCHHHHHHH
Confidence            37889999999999999999999999886  49999999999999999999999988 9999999999999999999999


Q ss_pred             HhhhCCCCCCC
Q psy12030        225 IAIKHSDRILP  235 (245)
Q Consensus       225 ~~~~~~~~~~~  235 (245)
                      +++|+++++..
T Consensus        84 ~~~h~~~~~p~   94 (96)
T 2dmd_A           84 LRSHTGDSGPS   94 (96)
T ss_dssp             HTTCCSCCCCC
T ss_pred             HHHhcCCCCCC
Confidence            99999988654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.82  E-value=8.1e-21  Score=125.14  Aligned_cols=85  Identities=28%  Similarity=0.582  Sum_probs=70.9

Q ss_pred             CCCccCC--CCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHH
Q psy12030        148 EPKYQCP--HCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKT  223 (245)
Q Consensus       148 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~  223 (245)
                      +++|.|+  .|++.|.+...|..|++.|.+  +|.|..|++.|.....|..|+++|++ +++|.|++|++.|...+.|..
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC-CCCEECTTTCCEESSHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCC-CCCccCCCCCchhCCHHHHHH
Confidence            5677776  477777777777777777654  48999999999999999999999998 999999999999999999999


Q ss_pred             hHhhhCCCCC
Q psy12030        224 HIAIKHSDRI  233 (245)
Q Consensus       224 H~~~~~~~~~  233 (245)
                      |+++|++++.
T Consensus        81 H~~~H~~~k~   90 (90)
T 1a1h_A           81 HTKIHLRQKD   90 (90)
T ss_dssp             HHGGGGC---
T ss_pred             HHHHhcccCC
Confidence            9999998763

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.81  E-value=1.8e-20  Score=121.26  Aligned_cols=79  Identities=25%  Similarity=0.526  Sum_probs=60.4

Q ss_pred             ccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhh
Q psy12030        151 YQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       151 ~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  228 (245)
                      |.|++|++.|.+...|..|++.|.+  +|.|+.|++.|.....|..|+++|++ +++|.|++|++.|...+.|..|+++|
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG-EKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHT-CCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             ccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcC-CCCCcCCCcchhhCChHHHHHHHHhh
Confidence            4455555555555555555444432  47888888889899999999999988 89999999999999999999999998


Q ss_pred             CC
Q psy12030        229 HS  230 (245)
Q Consensus       229 ~~  230 (245)
                      +|
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            75

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=2.8e-19  Score=121.46  Aligned_cols=88  Identities=24%  Similarity=0.488  Sum_probs=82.1

Q ss_pred             CCccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHH
Q psy12030        119 SGMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHK  196 (245)
Q Consensus       119 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~  196 (245)
                      .++|.|..|++.|.....|..|++.|++ +++|.|++|++.|.....|..|++.|.+  +|.|.+|++.|.....|..|+
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~   93 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERTHTD-ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK   93 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHHHCC-SCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHcCC-CCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHH
Confidence            3468999999999999999999999998 8999999999999999999999999986  499999999999999999999


Q ss_pred             hHHhCCCCCccc
Q psy12030        197 REECGQEPKYQC  208 (245)
Q Consensus       197 ~~h~~~~~~~~C  208 (245)
                      ++|++ ++||.+
T Consensus        94 ~~H~~-~~~~~~  104 (106)
T 2ee8_A           94 TLHMQ-TSSPTA  104 (106)
T ss_dssp             HHTTS-CCCCCC
T ss_pred             HHhCC-CCCCcC
Confidence            99998 888865

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=2.6e-19  Score=119.11  Aligned_cols=84  Identities=23%  Similarity=0.477  Sum_probs=73.1

Q ss_pred             CCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCC-CCCcccCCCcccCCChHHHHHh
Q psy12030        148 EPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQ-EPKYQCPHCPHKAKHKANLKTH  224 (245)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~~~C~~C~~~f~~~~~l~~H  224 (245)
                      +++|.|++|++.|.+...|..|++.|.+  +|.|++|++.|.....|..|+++|++. +++|.|++|++.|.....|..|
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H   84 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH   84 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHH
T ss_pred             CCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHH
Confidence            6788888888888888888888888875  499999999999999999999999882 2899999999999999999999


Q ss_pred             Hh-hhCCC
Q psy12030        225 IA-IKHSD  231 (245)
Q Consensus       225 ~~-~~~~~  231 (245)
                      ++ .|.++
T Consensus        85 ~~~~H~~~   92 (95)
T 2yt9_A           85 IKQVHSGP   92 (95)
T ss_dssp             HHHTSCCC
T ss_pred             HHHhcCCC
Confidence            97 45443

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.78  E-value=2.9e-19  Score=107.63  Aligned_cols=57  Identities=32%  Similarity=0.716  Sum_probs=53.8

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +||.|++||++|...+.|..|+++|++ ++||.|++||+.|...+.|..|+++|+|++
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~-ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRAHLG-YRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHHT-CCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHHhCC-CcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            579999999999999999999999999 999999999999999999999999999875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=2.2e-19  Score=122.75  Aligned_cols=84  Identities=26%  Similarity=0.635  Sum_probs=68.6

Q ss_pred             hcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHH
Q psy12030        144 ECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANL  221 (245)
Q Consensus       144 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l  221 (245)
                      |.+ +++|.| .|++.|.+...|..|++.|.+  +|.|++|++.|.....|..|+++|++ +++|.|++|++.|.....|
T Consensus         5 h~~-~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l   81 (110)
T 2csh_A            5 SSG-DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG-IKPYECNICAKRFMWRDSF   81 (110)
T ss_dssp             CCC-CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCC-CCCEECSSSCCEESCHHHH
T ss_pred             CCC-CCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCC-CCCeeCCCCcchhcCHHHH
Confidence            444 777888 788888888888888777764  48888888888888888888888877 8888888888888888888


Q ss_pred             HHhHhhhCC
Q psy12030        222 KTHIAIKHS  230 (245)
Q Consensus       222 ~~H~~~~~~  230 (245)
                      ..|+++|+.
T Consensus        82 ~~H~~~~~~   90 (110)
T 2csh_A           82 HRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHccc
Confidence            888888874

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=8.1e-19  Score=116.89  Aligned_cols=84  Identities=29%  Similarity=0.581  Sum_probs=76.6

Q ss_pred             CccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCCc--eeCCCCCCccCChhHHHHHHh
Q psy12030        120 GMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGV--FACNVCGKGYRYKTGLYRHKR  197 (245)
Q Consensus       120 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~C~~C~~~f~~~~~l~~H~~  197 (245)
                      ++|.|.+|++.|.+...|..|++.|++ +++|.|++|++.|.....|..|++.|.+.  |.|.+|++.|.....|..|++
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   85 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHMRCHTG-VKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR   85 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHGGGCCC-CCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHT
T ss_pred             cCeECCCCCCccCCHHHHHHHHHhcCC-CCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHH
Confidence            468888999999999999999999988 89999999999999999999999998764  999999999999999999999


Q ss_pred             HHhCCCCC
Q psy12030        198 EECGQEPK  205 (245)
Q Consensus       198 ~h~~~~~~  205 (245)
                      +|++ +++
T Consensus        86 ~h~~-~~~   92 (96)
T 2dmd_A           86 SHTG-DSG   92 (96)
T ss_dssp             TCCS-CCC
T ss_pred             HhcC-CCC
Confidence            9988 443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.76  E-value=5.1e-19  Score=114.29  Aligned_cols=80  Identities=31%  Similarity=0.683  Sum_probs=74.3

Q ss_pred             ccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhH
Q psy12030        121 MFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKRE  198 (245)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~  198 (245)
                      +|.|..|++.|.+...|..|++.|++ +++|.|+.|++.|.+...|..|++.|.+  +|.|++|++.|...+.|..|+++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSD-TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHT-CCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCC-CCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            48899999999999999999999998 8999999999999999999999998876  49999999999999999999999


Q ss_pred             HhC
Q psy12030        199 ECG  201 (245)
Q Consensus       199 h~~  201 (245)
                      |+|
T Consensus        80 H~g   82 (82)
T 2kmk_A           80 HTG   82 (82)
T ss_dssp             HC-
T ss_pred             hCC
Confidence            965

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=6.6e-19  Score=121.39  Aligned_cols=103  Identities=19%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             hhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHHHhHHhh--hcCCCCCccCCCCCCc
Q psy12030         82 KRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKF--ECGQEPKYQCPHCPHR  159 (245)
Q Consensus        82 ~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~~C~~C~~~  159 (245)
                      ...|..|+++|.+ +++                       |.|..|++.|.....|..|++.  |.+....+.|+.|++.
T Consensus         4 ~~~l~~H~~~H~~-~~~-----------------------~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~   59 (115)
T 2dmi_A            4 GSSGKLYGSIFTG-ASK-----------------------FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKR   59 (115)
T ss_dssp             CCCCCCCCCCCCC-CCS-----------------------EEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSC
T ss_pred             chhhhhheeeeCC-CCC-----------------------EECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcc
Confidence            4567889988877 554                       6677778888888999999988  6663344569999999


Q ss_pred             C--CChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccC
Q psy12030        160 A--KHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCP  209 (245)
Q Consensus       160 f--~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  209 (245)
                      |  .....|..|++.|.+  +|.|++|++.|.....|..|+++|+. ......+
T Consensus        60 f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~-~~~~~~~  112 (115)
T 2dmi_A           60 WSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH-YQKVSGP  112 (115)
T ss_dssp             CSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTT-TTCSCCC
T ss_pred             cccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCC-cccCCCC
Confidence            9  899999999999986  59999999999999999999999987 5444444

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.4e-18  Score=111.48  Aligned_cols=69  Identities=20%  Similarity=0.444  Sum_probs=64.3

Q ss_pred             CceeCCC--CCCccCChhHHHHHHh-HHhCCCCCcccCC--CcccCCChHHHHHhHhhhCCCCCCCCCCCCcccc
Q psy12030        175 GVFACNV--CGKGYRYKTGLYRHKR-EECGQEPKYQCPH--CPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTR  244 (245)
Q Consensus       175 ~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~  244 (245)
                      ++|.|..  |++.|.....|..|++ .|.+ +++|.|++  |++.|.....|..|+++|++++||.|++||++|+
T Consensus         6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~-~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIH-QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SSEECSSTTTCCEESSHHHHHHHHHHGGGS-CCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHHhCC-CCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            3588876  9999999999999999 6877 99999999  9999999999999999999999999999999996

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.75  E-value=1.5e-18  Score=114.19  Aligned_cols=83  Identities=27%  Similarity=0.614  Sum_probs=75.1

Q ss_pred             CccccC--cCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHH
Q psy12030        120 GMFACD--VCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRH  195 (245)
Q Consensus       120 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H  195 (245)
                      ++|.|.  .|++.|.....|..|++.|++ +++|.|+.|++.|.+...|..|++.|.+  +|.|++|++.|...+.|..|
T Consensus         3 k~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   81 (90)
T 1a1h_A            3 RPYACPVESCDRRFSQSGSLTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH   81 (90)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHHHHC-CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHHhCC-CCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH
Confidence            468887  599999999999999999998 8999999999999999999999998876  49999999999999999999


Q ss_pred             HhHHhCCCC
Q psy12030        196 KREECGQEP  204 (245)
Q Consensus       196 ~~~h~~~~~  204 (245)
                      +++|++ ++
T Consensus        82 ~~~H~~-~k   89 (90)
T 1a1h_A           82 TKIHLR-QK   89 (90)
T ss_dssp             HGGGGC---
T ss_pred             HHHhcc-cC
Confidence            999988 54

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.74  E-value=3.6e-18  Score=114.59  Aligned_cols=82  Identities=22%  Similarity=0.470  Sum_probs=68.4

Q ss_pred             CCCccCCC--CCCcCCChHHHHhhhcCCCC--ceeCC--CCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHH
Q psy12030        148 EPKYQCPH--CPHRAKHKANLKTHIAPQLG--VFACN--VCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANL  221 (245)
Q Consensus       148 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~--~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l  221 (245)
                      +++|.|..  |++.|.....|..|++.|.+  +|.|.  .|++.|.....|..|+++|++ +++|.|++|++.|.....|
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG-AKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTS-CCSCBCSSSCCBCSSHHHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCC-CCCeECCCCcCccCCHHHH
Confidence            45667765  77777777777777766654  48885  699999999999999999988 9999999999999999999


Q ss_pred             HHhHhhhCC
Q psy12030        222 KTHIAIKHS  230 (245)
Q Consensus       222 ~~H~~~~~~  230 (245)
                      ..|+++|++
T Consensus        92 ~~H~~~H~~  100 (100)
T 2ebt_A           92 ALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhCC
Confidence            999999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.74  E-value=4.2e-18  Score=111.73  Aligned_cols=81  Identities=23%  Similarity=0.534  Sum_probs=71.2

Q ss_pred             CCCccCCC--CCCcCCChHHHHhhhcCCCC--ceeCC--CCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHH
Q psy12030        148 EPKYQCPH--CPHRAKHKANLKTHIAPQLG--VFACN--VCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANL  221 (245)
Q Consensus       148 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~--~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l  221 (245)
                      ..+|.|+.  |++.|.+...|..|++.|.+  +|.|+  .|++.|.....|..|+++|++ +++|.|++|++.|...+.|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l   81 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG-HRPFQCQKCDRAFSRSDHL   81 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHC-CCCEECSSSSCEESSHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCC-CCCccCCCCCcccCCHHHH
Confidence            45678887  88888888888888888775  48997  599999999999999999998 9999999999999999999


Q ss_pred             HHhHhhhC
Q psy12030        222 KTHIAIKH  229 (245)
Q Consensus       222 ~~H~~~~~  229 (245)
                      ..|+++|.
T Consensus        82 ~~H~~~H~   89 (89)
T 2wbs_A           82 ALHMKRHF   89 (89)
T ss_dssp             HHHGGGGC
T ss_pred             HHHHHhhC
Confidence            99999873

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=4.7e-18  Score=110.77  Aligned_cols=78  Identities=15%  Similarity=0.258  Sum_probs=68.9

Q ss_pred             HHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCC---CCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCC
Q psy12030        166 LKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQE---PKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGR  240 (245)
Q Consensus       166 l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~---~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~  240 (245)
                      |.+|+++|.+  +|.|.+|++.|.....|..|++.|++.+   ++|.|++|++.|.....|..|+++|++++++.|..|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            4567777775  4899999999999999999999888733   7899999999999999999999999999999999999


Q ss_pred             ccc
Q psy12030        241 VWT  243 (245)
Q Consensus       241 ~~f  243 (245)
                      .+|
T Consensus        83 ~~~   85 (86)
T 1x6h_A           83 PSS   85 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            876

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=8.1e-18  Score=111.79  Aligned_cols=85  Identities=31%  Similarity=0.605  Sum_probs=49.5

Q ss_pred             CCCceecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHHHhHHhhhc
Q psy12030         66 YSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRHKKFEC  145 (245)
Q Consensus        66 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~  145 (245)
                      ++++|.|.+|++.|.+...|..|++.|++ +++                       |.|..|++.|.....|..|++.|+
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~-----------------------~~C~~C~~~f~~~~~l~~H~~~h~   59 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSG-EKP-----------------------YSCPVCGLRFKRKDRMSYHVRSHD   59 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCS-SCS-----------------------EECSSSCCEESCHHHHHHHHHHHC
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCC-CCC-----------------------CcCCCCCCccCCHHHHHHHHHHhc
Confidence            45566677777777666666666666655 333                       445555555666666666666666


Q ss_pred             CC-CCCccCCCCCCcCCChHHHHhhhc-CCC
Q psy12030        146 GQ-EPKYQCPHCPHRAKHKANLKTHIA-PQL  174 (245)
Q Consensus       146 ~~-~~~~~C~~C~~~f~~~~~l~~H~~-~h~  174 (245)
                      +. +++|.|+.|++.|.+...|..|++ .|.
T Consensus        60 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           60 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             CCCCSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred             CCCCCceECCCccchhCCHHHHHHHHHHhcC
Confidence            52 155555555555555555555543 444

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=7.6e-18  Score=114.52  Aligned_cols=84  Identities=14%  Similarity=0.315  Sum_probs=73.7

Q ss_pred             ccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHh-
Q psy12030        121 MFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKR-  197 (245)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~-  197 (245)
                      +|.|.+|++.|.....|..|+++|   +++|.|++|++.|.....|..|+. |.+  +|.|++|++.|.....|..|++ 
T Consensus        16 ~~~C~~C~~~f~~~~~l~~H~~~H---~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~   91 (107)
T 1wjp_A           16 VYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVE   91 (107)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHH---HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHHHC---CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHH
Confidence            477888888899999999999998   468999999999999999999986 776  4999999999999999999998 


Q ss_pred             HHhCCCCCcccC
Q psy12030        198 EECGQEPKYQCP  209 (245)
Q Consensus       198 ~h~~~~~~~~C~  209 (245)
                      .|.+ +++|.|.
T Consensus        92 ~H~~-~~~~~~~  102 (107)
T 1wjp_A           92 VHNQ-NNMAPTS  102 (107)
T ss_dssp             TSCC-CCCCCCC
T ss_pred             HcCC-CCCCCCC
Confidence            6655 9999875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=3.2e-17  Score=111.93  Aligned_cols=80  Identities=28%  Similarity=0.608  Sum_probs=74.2

Q ss_pred             CccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHh
Q psy12030        120 GMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKR  197 (245)
Q Consensus       120 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~  197 (245)
                      ++|.| .|++.|.+...|..|++.|++ +++|.|++|++.|.....|..|++.|.+  +|.|++|++.|.....|..|++
T Consensus         9 k~~~C-~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   86 (110)
T 2csh_A            9 KLYPC-QCGKSFTHKSQRDRHMSMHLG-LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT   86 (110)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSC-CCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCEec-cCCCccCCHHHHHHHHHHcCC-CcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHH
Confidence            35888 899999999999999999988 8999999999999999999999999986  4999999999999999999999


Q ss_pred             HHhC
Q psy12030        198 EECG  201 (245)
Q Consensus       198 ~h~~  201 (245)
                      +|+.
T Consensus        87 ~~~~   90 (110)
T 2csh_A           87 SCTK   90 (110)
T ss_dssp             HHHH
T ss_pred             Hccc
Confidence            9875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.69  E-value=1.9e-17  Score=107.59  Aligned_cols=76  Identities=30%  Similarity=0.583  Sum_probs=40.2

Q ss_pred             cccc--CcCCCccCchhHHHhHHhhhcCCCCCccCCC--CCCcCCChHHHHhhhcCCCCceeCCC---CCCccCChhHHH
Q psy12030        121 MFAC--DVCGKEYKYKRGLYRHKKFECGQEPKYQCPH--CPHRAKHKANLKTHIAPQLGVFACNV---CGKGYRYKTGLY  193 (245)
Q Consensus       121 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~C~~---C~~~f~~~~~l~  193 (245)
                      +|.|  ..|++.|.....|..|+++|++ +++|.|+.  |++.|.+...|..|++.|.+ |.|..   |++.|...+.|.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~C~~~~~C~~~f~~~~~l~   78 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG-YPCKKDDSCSFVGKTWTLYL   78 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHT-TCCEECCSTTCCCEESSHHHHHHHHHHHHS-EECCSCSSCCCEESSHHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCC-CCCCCCCCCCCccCCHHHHH
Confidence            3566  6666667777777777766666 55555544  44444444444444444444 44444   444444444444


Q ss_pred             HHHhH
Q psy12030        194 RHKRE  198 (245)
Q Consensus       194 ~H~~~  198 (245)
                      .|+++
T Consensus        79 ~H~~~   83 (85)
T 2j7j_A           79 KHVAE   83 (85)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44443

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.68  E-value=1e-18  Score=114.58  Aligned_cols=80  Identities=21%  Similarity=0.383  Sum_probs=50.4

Q ss_pred             CCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHh
Q psy12030        149 PKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIA  226 (245)
Q Consensus       149 ~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~  226 (245)
                      ++|.|++|++.|.+...|..|++.|.+  +|.|++|++.|.....|..|+++|++  .+|.|+.|++.|.....|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~--~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI--LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHhhhHHHHH
Confidence            345555555555555555555544443  36666677777777777777777653  56777777777777777777777


Q ss_pred             hhCC
Q psy12030        227 IKHS  230 (245)
Q Consensus       227 ~~~~  230 (245)
                      .+|+
T Consensus        80 ~~h~   83 (88)
T 1llm_C           80 RLKK   83 (88)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=4.9e-17  Score=103.70  Aligned_cols=61  Identities=23%  Similarity=0.549  Sum_probs=56.7

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCC
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP  236 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  236 (245)
                      .+|.|++|++.|.....|..|+++|++ ++||.|++|++.|.....|..|+++|++++||.|
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRTHTG-EKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTTTCC-SCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHHcCC-CcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            359999999999999999999999988 8999999999999999999999999999999987

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.66  E-value=7.1e-17  Score=97.08  Aligned_cols=55  Identities=27%  Similarity=0.647  Sum_probs=32.1

Q ss_pred             CccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC
Q psy12030        120 GMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG  175 (245)
Q Consensus       120 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  175 (245)
                      +||.|.+||+.|.....|..|+++|+| ++||.|++|++.|.....|..|+++|++
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~-ekp~~C~~C~k~F~~~~~L~~H~~~Htg   57 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRAHLG-YRPRSCPECGKCFRDQSEVNRHLKVHQN   57 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHHT-CCCEECTTTCCEESSHHHHHHHGGGGSC
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHHhCC-CcCeECCCCCCCcCCHHHHHHHhCccCC
Confidence            345666666666666666666666666 5555555555555555555555555543

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.66  E-value=1.3e-16  Score=104.46  Aligned_cols=81  Identities=27%  Similarity=0.594  Sum_probs=49.5

Q ss_pred             Cceeccc--ccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccC--cCCCccCchhHHHhHHhh
Q psy12030         68 KGFECQV--CGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACD--VCGKEYKYKRGLYRHKKF  143 (245)
Q Consensus        68 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~--~C~~~f~~~~~l~~H~~~  143 (245)
                      .+|.|++  |++.|.....|..|++.|.+ +++                       |.|.  .|++.|.+...|..|++.
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~-----------------------~~C~~~~C~~~f~~~~~l~~H~~~   59 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTG-EKP-----------------------YHCDWDGCGWKFARSDELTRHYRK   59 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCS-SCC-----------------------EECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCC-CCC-----------------------cCCCCCCCCCccCCHHHHHHHHHH
Confidence            4566666  66666666666666666655 333                       4443  355566666666666666


Q ss_pred             hcCCCCCccCCCCCCcCCChHHHHhhhcCC
Q psy12030        144 ECGQEPKYQCPHCPHRAKHKANLKTHIAPQ  173 (245)
Q Consensus       144 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h  173 (245)
                      |++ +++|.|+.|++.|.+...|..|+++|
T Consensus        60 h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           60 HTG-HRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             HHC-CCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             cCC-CCCccCCCCCcccCCHHHHHHHHHhh
Confidence            666 56666666666666666666666554

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.66  E-value=1.5e-16  Score=106.65  Aligned_cols=81  Identities=27%  Similarity=0.556  Sum_probs=73.5

Q ss_pred             CccccCc--CCCccCchhHHHhHHhhhcCCCCCccCC--CCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHH
Q psy12030        120 GMFACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCP--HCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLY  193 (245)
Q Consensus       120 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~  193 (245)
                      ++|.|..  |++.|.....|..|++.|++ +++|.|+  .|++.|.....|..|++.|.+  +|.|++|++.|.....|.
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   92 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTG-EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA   92 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHHHSC-CCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHH
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHHHhCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHH
Confidence            4588886  99999999999999999988 8899996  699999999999999998886  499999999999999999


Q ss_pred             HHHhHHhC
Q psy12030        194 RHKREECG  201 (245)
Q Consensus       194 ~H~~~h~~  201 (245)
                      .|+++|++
T Consensus        93 ~H~~~H~~  100 (100)
T 2ebt_A           93 LHMKRHQN  100 (100)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhCC
Confidence            99999864

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.66  E-value=5e-18  Score=111.22  Aligned_cols=81  Identities=16%  Similarity=0.205  Sum_probs=76.1

Q ss_pred             CccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC-ceeCCCCCCccCChhHHHHHHhH
Q psy12030        120 GMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG-VFACNVCGKGYRYKTGLYRHKRE  198 (245)
Q Consensus       120 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~C~~C~~~f~~~~~l~~H~~~  198 (245)
                      ++|.|.+|++.|.....|..|+++|++ +++|.|+.|++.|.....|..|++.|++ +|.|+.|++.|.....|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC-CCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCC-CCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHH
Confidence            468999999999999999999999999 8999999999999999999999998876 49999999999999999999998


Q ss_pred             HhC
Q psy12030        199 ECG  201 (245)
Q Consensus       199 h~~  201 (245)
                      +++
T Consensus        81 ~h~   83 (88)
T 1llm_C           81 LKK   83 (88)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.66  E-value=8.2e-17  Score=104.49  Aligned_cols=76  Identities=28%  Similarity=0.558  Sum_probs=70.2

Q ss_pred             CccC--CCCCCcCCChHHHHhhhcCCCC--ceeCCC--CCCccCChhHHHHHHhHHhCCCCCcccCC---CcccCCChHH
Q psy12030        150 KYQC--PHCPHRAKHKANLKTHIAPQLG--VFACNV--CGKGYRYKTGLYRHKREECGQEPKYQCPH---CPHKAKHKAN  220 (245)
Q Consensus       150 ~~~C--~~C~~~f~~~~~l~~H~~~h~~--~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~---C~~~f~~~~~  220 (245)
                      ||.|  +.|++.|.+...|..|++.|.+  +|.|++  |++.|.....|..|+++|++    |.|+.   |++.|...+.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~~C~~~~~C~~~f~~~~~   76 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFVGKTWTL   76 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS----EECCSCSSCCCEESSHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC----CCCCCCCCCCCccCCHHH
Confidence            5889  8899999999999999998875  499988  99999999999999999987    99999   9999999999


Q ss_pred             HHHhHhhhC
Q psy12030        221 LKTHIAIKH  229 (245)
Q Consensus       221 l~~H~~~~~  229 (245)
                      |..|+++||
T Consensus        77 l~~H~~~hh   85 (85)
T 2j7j_A           77 YLKHVAECH   85 (85)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            999999886

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=4.8e-17  Score=105.91  Aligned_cols=78  Identities=22%  Similarity=0.435  Sum_probs=70.8

Q ss_pred             HHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCC------CceeCCCCCCccCChhHHHHHHhHHhCCCCCcccC
Q psy12030        136 GLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQL------GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCP  209 (245)
Q Consensus       136 ~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  209 (245)
                      +|.+|+++|++ +++|.|++|++.|.....|..|++.+.      .+|.|.+|++.|.....|..|+++|++ ++++.|.
T Consensus         2 s~~~H~~~H~~-~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~-~~~~~~~   79 (86)
T 1x6h_A            2 SSGSSGRTHTG-EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG-PDGVEGE   79 (86)
T ss_dssp             TTTCCSTTCCC-CCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCC-CCSCCCC
T ss_pred             CcccccceecC-CCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccC-CCCcccC
Confidence            46679999988 899999999999999999999987554      359999999999999999999999999 9999999


Q ss_pred             CCcccC
Q psy12030        210 HCPHKA  215 (245)
Q Consensus       210 ~C~~~f  215 (245)
                      .|+..|
T Consensus        80 ~~~~~~   85 (86)
T 1x6h_A           80 NSGPSS   85 (86)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            999875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.65  E-value=2.1e-16  Score=99.90  Aligned_cols=59  Identities=34%  Similarity=0.660  Sum_probs=55.7

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCC
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRIL  234 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  234 (245)
                      ++|.|.+|++.|.....|..|+++|++ +++|.|++|++.|...+.|..|+++|++++||
T Consensus        16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           16 KPYKCDRCQASFRYKGNLASHKTVHTG-EKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CSBCCTTSSCCBSCHHHHHHHHHHHCC-CCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHcCC-CCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            359999999999999999999999988 99999999999999999999999999999987

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=7.4e-17  Score=107.78  Aligned_cols=77  Identities=21%  Similarity=0.264  Sum_probs=57.4

Q ss_pred             ChHHHHhhhcCCCC--ceeCCCCCCccC-ChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        162 HKANLKTHIAPQLG--VFACNVCGKGYR-YKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       162 ~~~~l~~H~~~h~~--~~~C~~C~~~f~-~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      ....+..|++.|.+  +|.|.+|++.|. ....|..|+++|++.+++|.|++|++.|.....|..|+++||+++|+....
T Consensus         8 ~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~~~   87 (98)
T 2gqj_A            8 PGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEA   87 (98)
T ss_dssp             CCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCCCC
T ss_pred             CCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCCCC
Confidence            33445556666654  377777888888 888888888887654678888888888888888888888888888865544

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=1.4e-16  Score=106.51  Aligned_cols=65  Identities=14%  Similarity=0.206  Sum_probs=55.8

Q ss_pred             ceeCCCCCCccCChhHHHHHHhH-H---hCCCCCcccCCCcccCCChHHHHHh-HhhhCCCCCCCCCCCCc
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKRE-E---CGQEPKYQCPHCPHKAKHKANLKTH-IAIKHSDRILPPQEGRV  241 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~-h---~~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~~~~~~C~~C~~  241 (245)
                      +|.|++||+.|...+.|..|++. |   .+ ++||.|++||+.|...+.|..| +++|++++||.|.++..
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~-ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVL-NSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCC-SCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCC-CCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            58899999999999999999874 6   34 8899999999999999999999 78999999999987653

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=4e-16  Score=99.82  Aligned_cols=68  Identities=21%  Similarity=0.489  Sum_probs=59.6

Q ss_pred             CCCccCCC--CCCcCCChHHHHhhhc-CCCC--ceeCCC--CCCccCChhHHHHHHhHHhCCCCCcccCCCcccCC
Q psy12030        148 EPKYQCPH--CPHRAKHKANLKTHIA-PQLG--VFACNV--CGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAK  216 (245)
Q Consensus       148 ~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~--~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~  216 (245)
                      +++|.|..  |++.|.+...|..|++ .|.+  +|.|++  |++.|.....|..|+++|++ ++||.|++||+.|.
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD-TRDYICEFSGPSSG   79 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHT-SCCCSCCSSSCCCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCC-CCCeeCCCCCCCCC
Confidence            67788876  8888888888888887 6764  499998  99999999999999999999 99999999999984

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=6.9e-16  Score=102.45  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=59.3

Q ss_pred             cCCChHHHHhhhcCCCC--ceeCCCCCCcc-CChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHh-HhhhCCCCCC
Q psy12030        159 RAKHKANLKTHIAPQLG--VFACNVCGKGY-RYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH-IAIKHSDRIL  234 (245)
Q Consensus       159 ~f~~~~~l~~H~~~h~~--~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~~~~~  234 (245)
                      .|.....|..|.+.+.+  +|.|++|++.| .....|..|+++| + ++||.|.+||+.|...+.|..| +++|+++..|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~-~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-K-QEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG   92 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-C-CCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSC
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-C-CCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCC
Confidence            34444555555544432  48888899999 8999999999999 7 9999999999999999999999 7777765555


Q ss_pred             CC
Q psy12030        235 PP  236 (245)
Q Consensus       235 ~C  236 (245)
                      .+
T Consensus        93 ~~   94 (96)
T 2ctd_A           93 PS   94 (96)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.60  E-value=8.4e-17  Score=113.07  Aligned_cols=52  Identities=25%  Similarity=0.475  Sum_probs=31.5

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      |.|++||+.|.....|..|+++|   ++||.|++||+.|...+.|..|+++||++
T Consensus        75 ~~C~~C~k~f~~~~~l~~H~~~H---~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           75 FVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHT---CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             eECCCCCcccCCHhHHHHHHHHC---CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            44555555555555566666655   55566666666666666666666666654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=9.5e-16  Score=95.75  Aligned_cols=59  Identities=27%  Similarity=0.518  Sum_probs=54.9

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILP  235 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  235 (245)
                      +|.|.+|++.|.....|..|+++|++ +++|.|++|++.|.....|..|+++|++++|.+
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            9 PEKCSECSYSCSSKAALRIHERIHCT-DRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC-SCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCC-CCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            59999999999999999999999888 999999999999999999999999999998865

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.60  E-value=1e-15  Score=91.53  Aligned_cols=56  Identities=27%  Similarity=0.530  Sum_probs=53.3

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      ||.|++|++.|...+.|..|+++|++ ++||.|++|++.|...+.|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTD-VRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSS-CCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCC-CCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            48899999999999999999999988 999999999999999999999999999886

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.58  E-value=2e-15  Score=90.22  Aligned_cols=55  Identities=33%  Similarity=0.597  Sum_probs=50.3

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      .+|.|++|++.|.....|..|+++|++ ++||.|++|++.|...+.|..|+++||+
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTG-EKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHC-CCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCC-CCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            358999999999999999999999998 9999999999999999999999999985

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=2.6e-15  Score=94.24  Aligned_cols=61  Identities=28%  Similarity=0.560  Sum_probs=53.4

Q ss_pred             cCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        171 APQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       171 ~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      ++|.+  +|.|++|++.|.....|..|+++|++ ++||.|++|++.|.....|..|+++|+++.
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTG-EKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGC-SCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCC-CCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            44544  49999999999999999999999988 899999999999999999999999998765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.57  E-value=2.7e-15  Score=96.79  Aligned_cols=56  Identities=27%  Similarity=0.499  Sum_probs=51.0

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHh-hhCCCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIA-IKHSDR  232 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~  232 (245)
                      +|.|++||+.|.....|..|+++|++ ++||.|++|++.|...+.|.+|++ +|.+++
T Consensus        28 ~h~C~~Cgk~F~~~~~L~~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           28 CHLCPVCGESFASKGAQERHLRLLHA-AQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             TEECTTSCCEESSHHHHHHHHHTTSC-SSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CEECCCCCCCcCcHHHHhhhhhhccC-CCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            49999999999999999999999998 999999999999999999999985 455554

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=2.3e-15  Score=95.85  Aligned_cols=67  Identities=21%  Similarity=0.452  Sum_probs=53.8

Q ss_pred             HHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhH-HhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        166 LKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKRE-ECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       166 l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      |.+|+++|.+  +|.|++|++.|.....|..|++. |.+++++|.|++|++.|.....|..|++++|+..
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            3467777775  48888899999999999999874 4442488999999999999999999999887654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=9.7e-16  Score=102.30  Aligned_cols=78  Identities=18%  Similarity=0.264  Sum_probs=69.9

Q ss_pred             ccCchhHHHhHHhhhcCCCCCccCCCCCCcCC-ChHHHHhhhcCCCC---ceeCCCCCCccCChhHHHHHHhHHhCCCCC
Q psy12030        130 EYKYKRGLYRHKKFECGQEPKYQCPHCPHRAK-HKANLKTHIAPQLG---VFACNVCGKGYRYKTGLYRHKREECGQEPK  205 (245)
Q Consensus       130 ~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~---~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  205 (245)
                      .+.....+..|+++|.+ +++|.|++|++.|. ....|..|++.|.+   +|.|.+|++.|.....|..|+++|++ ++|
T Consensus         5 s~~~~~~~~~h~~~h~~-~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~-~kp   82 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHE-RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS-AKP   82 (98)
T ss_dssp             CCCCCCSCSHHHHTTTT-TSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSC-SCS
T ss_pred             CCCCCCcHHHHHHHhcc-CCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcC-CCC
Confidence            45566778899999988 99999999999999 99999999999987   49999999999999999999999998 887


Q ss_pred             cccC
Q psy12030        206 YQCP  209 (245)
Q Consensus       206 ~~C~  209 (245)
                      +.-.
T Consensus        83 ~~~~   86 (98)
T 2gqj_A           83 SDAE   86 (98)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            6543

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=5.6e-15  Score=94.00  Aligned_cols=60  Identities=25%  Similarity=0.594  Sum_probs=55.1

Q ss_pred             CCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCccc
Q psy12030        148 EPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQC  208 (245)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  208 (245)
                      +++|.|++|++.|.....|..|++.|.+  +|.|++|++.|.....|..|+++|++ ++||.|
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~-~~p~~C   77 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG-SGPSSG   77 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCC-CCCCCC
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCC-CCCCCC
Confidence            7889999999999999999999998876  49999999999999999999999988 999987

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.54  E-value=3.1e-16  Score=110.13  Aligned_cols=104  Identities=16%  Similarity=0.149  Sum_probs=83.3

Q ss_pred             CCCccCCCCcccc--cChHHHHHhc----CCccccCcCCCccC------chhHHHhHHhhhcCCCCCccCCCCCCcCCCh
Q psy12030         96 EPKYQCPQCKDSF--FSWSAFHKNL----SGMFACDVCGKEYK------YKRGLYRHKKFECGQEPKYQCPHCPHRAKHK  163 (245)
Q Consensus        96 ~~~~~C~~C~~~f--~~~~~l~~h~----~~~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~  163 (245)
                      .++|.|...+...  .....+..+.    .+.+.|..|++.|.      ....|..|+ .|++ +++|.|++|++.|...
T Consensus        10 ~k~~~~~~k~~~~~~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~-~~~~~C~~C~k~f~~~   87 (129)
T 2wbt_A           10 SKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKA-ISQFVCPLCLMPFSSS   87 (129)
T ss_dssp             CCGGGGCSSCEEEECCHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHH-HCSEECTTTCCEESSH
T ss_pred             ccccccccCCeeeeecHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCC-CCCeECCCCCcccCCH
Confidence            7889887765543  3333333343    23577888776665      556677776 6888 8999999999999999


Q ss_pred             HHHHhhhcCCCCceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        164 ANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       164 ~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ..|..|+++|..+|.|++|++.|...+.|..|+++|++
T Consensus        88 ~~l~~H~~~H~~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           88 VSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             HHHHHHHHHTCCCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHCCCCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence            99999999997789999999999999999999999988

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1e-14  Score=96.63  Aligned_cols=61  Identities=21%  Similarity=0.367  Sum_probs=56.5

Q ss_pred             eeCCCCCCccCChhHHHHHHhH-HhCCCCC--------cccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKRE-ECGQEPK--------YQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      |.|..|++.|.....|..|+++ |.+ +++        |.|++|++.|.....|..|+++|++++||.|..
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~-~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVG-GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTC-CTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSCC
T ss_pred             CcccccccccCCHHHHHHHHHHhccC-CCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            7899999999999999999998 666 777        999999999999999999999999999999973

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=4.1e-15  Score=99.37  Aligned_cols=64  Identities=17%  Similarity=0.345  Sum_probs=54.8

Q ss_pred             CCCccCCCCCCcCCChHHHHhhhc-CCC-----CceeCCCCCCccCChhHHHHH-HhHHhCCCCCcccCCCc
Q psy12030        148 EPKYQCPHCPHRAKHKANLKTHIA-PQL-----GVFACNVCGKGYRYKTGLYRH-KREECGQEPKYQCPHCP  212 (245)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~-----~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~~C~~C~  212 (245)
                      +++|.|+.|++.|.....|..|++ .|.     .+|.|++||+.|...+.|..| +++|++ ++||.|.++.
T Consensus        16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htg-ekpy~C~~~~   86 (102)
T 2ghf_A           16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG-EENFKLTMVK   86 (102)
T ss_dssp             CSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTT-CCCEEEEECC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCC-CCCeeCCccc
Confidence            788889999999998888888886 472     359999999999999999999 788888 9999998754

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=5.9e-17  Score=102.05  Aligned_cols=68  Identities=19%  Similarity=0.354  Sum_probs=50.8

Q ss_pred             HHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        164 ANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       164 ~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      ..|..|++.|.+  +|.|++||+.|.....|..        +++|.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            345566666654  3777777777777666655        6678888888888888888888888888888888877

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=3.7e-15  Score=94.86  Aligned_cols=69  Identities=23%  Similarity=0.346  Sum_probs=61.4

Q ss_pred             HHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhc-CCCC---ceeCCCCCCccCChhHHHHHHhHHhCCCCCc
Q psy12030        137 LYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIA-PQLG---VFACNVCGKGYRYKTGLYRHKREECGQEPKY  206 (245)
Q Consensus       137 l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~---~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  206 (245)
                      |.+|+++|.+ +++|.|++|++.|.....|..|++ .|.+   +|.|++|++.|.....|..|++++++.+.|.
T Consensus         3 ~~~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A            3 SGSSGRTHSG-EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             CCCCCCCCSC-CCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             CCccccccCC-CCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            5578899988 999999999999999999999986 6764   5999999999999999999999988866653

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.3e-14  Score=89.44  Aligned_cols=55  Identities=27%  Similarity=0.609  Sum_probs=49.3

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHh-CCCCCcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREEC-GQEPKYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      +|.|+.|++.|.....|..|++.++ .+++||.|+.|++.|...+.|..|++++|+
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            5999999999999999999999844 348999999999999999999999999986

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.7e-14  Score=87.08  Aligned_cols=55  Identities=27%  Similarity=0.570  Sum_probs=49.4

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhH-hhhCCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHI-AIKHSD  231 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~-~~~~~~  231 (245)
                      +|.|++|++.|.....|..|+++|++ ++||.|++|++.|...+.|..|+ ++|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN-EKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTS-SCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCC-CCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            58999999999999999999999988 99999999999999999999997 455554

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.4e-14  Score=96.03  Aligned_cols=77  Identities=22%  Similarity=0.315  Sum_probs=66.1

Q ss_pred             CccCchhHHHhHHhhhcCCCCCccCCCCCCcC-CChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHH-HhHHhCCCC
Q psy12030        129 KEYKYKRGLYRHKKFECGQEPKYQCPHCPHRA-KHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRH-KREECGQEP  204 (245)
Q Consensus       129 ~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~  204 (245)
                      ..|.....|..|++.+.+ +++|.|+.|++.| .+...|..|+++| +  +|.|.+|++.|...+.|..| +++|++ ++
T Consensus        14 ~~~~~~~~~~~~~~~~~~-~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~-~p   90 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVD-KGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNS-LP   90 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHH-TSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCC-CS
T ss_pred             CCCCCchHHHHHHHHhcC-CCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCC-CC
Confidence            466778889999999988 8999999999999 9999999999988 5  49999999999999999999 777755 55


Q ss_pred             Cccc
Q psy12030        205 KYQC  208 (245)
Q Consensus       205 ~~~C  208 (245)
                      .|.+
T Consensus        91 ~~~~   94 (96)
T 2ctd_A           91 SGPS   94 (96)
T ss_dssp             SCSC
T ss_pred             CCCC
Confidence            4443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.48  E-value=3.9e-14  Score=89.33  Aligned_cols=58  Identities=31%  Similarity=0.698  Sum_probs=48.9

Q ss_pred             CCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCc
Q psy12030        148 EPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKY  206 (245)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  206 (245)
                      +++|.|+.|++.|.....|..|++.|.+  +|.|.+|++.|.....|..|+++|++ ++||
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~kp~   74 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG-EKPY   74 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCC-SCCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCC-CCCC
Confidence            6778888888888888888888877775  48899999999999999999999988 8876

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=5.4e-17  Score=102.25  Aligned_cols=71  Identities=15%  Similarity=0.260  Sum_probs=65.0

Q ss_pred             hhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCCceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        134 KRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       134 ~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      ...|..|+++|.+ +++|.|++|++.|.+...|..     ..+|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         3 ~~~l~~H~~~h~~-~~~~~C~~C~k~f~~~~~l~~-----~~~~~C~~C~~~f~~~~~l~~H~~~H~~-~~~~~C~~C   73 (73)
T 2ctu_A            3 SGSSGKRQKIHLG-DRSQKCSKCGIIFIRRSTLSR-----RKTPMCEKCRKDSCQEAALNKDEGNESG-KKTSGPSSG   73 (73)
T ss_dssp             CCSCCCCCCCCCC-CSEEECSSSCCEEECCCCCCC-----SSSCCCHHHHHTCSCCCSSCCCSSCCCC-CCCSSCCCC
T ss_pred             chhHHHHHHHhCC-CCCeeCCcccchhCCHHHhCc-----CCCCCCCCCChhhcCHHHHHHHHHhhcC-CCCCCCCCC
Confidence            4567889999988 899999999999999988876     5679999999999999999999999988 999999988

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.5e-13  Score=87.44  Aligned_cols=62  Identities=19%  Similarity=0.468  Sum_probs=51.7

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhC--CCCCcccCCCcccCCChHHHHHhHhhh-CCCCCCCCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECG--QEPKYQCPHCPHKAKHKANLKTHIAIK-HSDRILPPQ  237 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~~C~~C~~~f~~~~~l~~H~~~~-~~~~~~~C~  237 (245)
                      +|.|.+|++.|.....|..|+++|++  .+++|.|++|++.|.....|..|++.+ .++++....
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             CeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence            58999999999999999999999985  378999999999999999999999554 455555443

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=2.9e-14  Score=81.14  Aligned_cols=45  Identities=20%  Similarity=0.452  Sum_probs=41.7

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTG-KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSC-CSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCC-CcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=5.3e-14  Score=88.22  Aligned_cols=60  Identities=27%  Similarity=0.558  Sum_probs=52.7

Q ss_pred             HhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        141 KKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       141 ~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      .++|.+ +++|.|++|++.|.....|..|++.|.+  +|.|++|++.|.....|..|+++|++
T Consensus         6 ~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            6 SGIHSG-EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CCTTTT-CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             CcccCC-CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            356667 8889999999999999999999988875  49999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.45  E-value=3.2e-14  Score=80.99  Aligned_cols=45  Identities=20%  Similarity=0.452  Sum_probs=41.3

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTG-EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSS-SCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCC-CCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1e-13  Score=86.39  Aligned_cols=61  Identities=21%  Similarity=0.370  Sum_probs=53.0

Q ss_pred             hcCCCCCccCCCCCCcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCc
Q psy12030        144 ECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKY  206 (245)
Q Consensus       144 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  206 (245)
                      +.+ +++|.|++|++.|.....|..|++.|.+  +|.|.+|++.|.....|..|+++|++ ++|.
T Consensus         4 ~~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~-~~p~   66 (70)
T 1x5w_A            4 GSS-GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG-DMSG   66 (70)
T ss_dssp             CCC-CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHS-SSCC
T ss_pred             CCC-CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhC-CCCC
Confidence            344 7889999999999999999999988876  49999999999999999999999998 7654

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.44  E-value=3.2e-14  Score=80.97  Aligned_cols=45  Identities=18%  Similarity=0.411  Sum_probs=41.6

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMG-EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCC-CCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCC-CcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=3.3e-14  Score=80.93  Aligned_cols=45  Identities=20%  Similarity=0.398  Sum_probs=41.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTG-EKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSC-CCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCC-CCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=3.1e-14  Score=81.05  Aligned_cols=45  Identities=24%  Similarity=0.496  Sum_probs=41.2

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTG-EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSS-CCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCC-CCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=4.1e-14  Score=80.53  Aligned_cols=45  Identities=18%  Similarity=0.415  Sum_probs=41.3

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTG-EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSS-SCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCC-CCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47788877 9999999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=4.1e-14  Score=80.50  Aligned_cols=45  Identities=20%  Similarity=0.364  Sum_probs=41.7

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTG-EKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCC-CCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCC-CCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=4.4e-14  Score=80.39  Aligned_cols=45  Identities=24%  Similarity=0.486  Sum_probs=41.2

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTG-EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSS-CCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCC-CCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            47788887 9999999999999999999999999999999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=4.3e-14  Score=80.44  Aligned_cols=45  Identities=24%  Similarity=0.443  Sum_probs=41.5

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTG-EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSS-CCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCC-CcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=3.2e-14  Score=80.96  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=40.9

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTG-ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSC-CCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCC-CCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            47788877 9999999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=4.1e-14  Score=80.50  Aligned_cols=45  Identities=22%  Similarity=0.467  Sum_probs=41.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTG-EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSS-CCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCC-CcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=3.6e-14  Score=80.74  Aligned_cols=45  Identities=22%  Similarity=0.429  Sum_probs=41.6

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTG-EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCC-CCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCC-CCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=3.6e-14  Score=80.75  Aligned_cols=45  Identities=22%  Similarity=0.474  Sum_probs=41.5

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTG-EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTC-CCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCC-CCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47778888 9999999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.43  E-value=3.3e-14  Score=80.90  Aligned_cols=45  Identities=22%  Similarity=0.488  Sum_probs=41.0

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTG-EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTT-SCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCC-CcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=3.4e-14  Score=80.87  Aligned_cols=45  Identities=22%  Similarity=0.420  Sum_probs=40.7

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTG-ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCS-SCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCC-CcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            47778877 8999999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.43  E-value=3.3e-14  Score=80.92  Aligned_cols=45  Identities=20%  Similarity=0.345  Sum_probs=41.3

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTG-VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCC-CCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCC-CCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=4.4e-14  Score=80.40  Aligned_cols=45  Identities=20%  Similarity=0.451  Sum_probs=41.0

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTG-GKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSS-SCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCC-CCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37778877 9999999999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=6e-14  Score=79.82  Aligned_cols=44  Identities=20%  Similarity=0.437  Sum_probs=40.7

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      |+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 h~~~h~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSV-EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCC-CSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCC-CCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6778877 9999999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=3.7e-14  Score=80.72  Aligned_cols=45  Identities=22%  Similarity=0.479  Sum_probs=40.6

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSG-EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSS-SCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCC-CCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            46778877 9999999999999999999999999999999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=4.5e-14  Score=79.54  Aligned_cols=44  Identities=20%  Similarity=0.397  Sum_probs=39.7

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      |+++|.+ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         1 H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSG-EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSS-CCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCC-CcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5677877 8999999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=6.5e-14  Score=79.68  Aligned_cols=45  Identities=22%  Similarity=0.445  Sum_probs=41.5

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAG-EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSC-CCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCC-CCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            36778888 9999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=6e-14  Score=79.81  Aligned_cols=44  Identities=20%  Similarity=0.428  Sum_probs=41.0

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      |+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTG-EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCC-CCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCC-CCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6778877 9999999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=4.1e-14  Score=80.50  Aligned_cols=45  Identities=24%  Similarity=0.492  Sum_probs=41.3

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTG-EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSC-CCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCC-CcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            47788887 9999999999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.42  E-value=5.1e-14  Score=80.13  Aligned_cols=45  Identities=18%  Similarity=0.443  Sum_probs=40.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTG-EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCC-CCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCC-CCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            36778877 9999999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=5e-14  Score=80.16  Aligned_cols=45  Identities=24%  Similarity=0.400  Sum_probs=41.4

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSG-EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCC-CCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCC-CCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=3.3e-14  Score=80.91  Aligned_cols=45  Identities=22%  Similarity=0.397  Sum_probs=40.1

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTG-VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSC-CCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCC-CcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47778877 8999999999999999999999999999999999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=3.7e-14  Score=80.74  Aligned_cols=45  Identities=20%  Similarity=0.345  Sum_probs=40.9

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSS-TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCC-SCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCC-CCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            47778877 9999999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=3.4e-14  Score=80.88  Aligned_cols=45  Identities=24%  Similarity=0.456  Sum_probs=40.1

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTG-ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSC-CCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCC-CCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            47778877 8999999999999999999999999999999999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=4.4e-14  Score=80.39  Aligned_cols=45  Identities=24%  Similarity=0.463  Sum_probs=40.7

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSG-EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCC-CCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCC-CcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            47778877 8999999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=4.8e-14  Score=80.24  Aligned_cols=45  Identities=24%  Similarity=0.505  Sum_probs=41.0

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTG-EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCC-SSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCC-CCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            47778877 9999999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=5.1e-14  Score=80.11  Aligned_cols=45  Identities=18%  Similarity=0.495  Sum_probs=41.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSG-EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCC-CCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCC-CCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=3.6e-14  Score=80.77  Aligned_cols=45  Identities=20%  Similarity=0.433  Sum_probs=40.0

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSG-ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSC-CCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCC-CCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            47778877 8999999999999999999999999999999999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=6.9e-14  Score=79.59  Aligned_cols=44  Identities=20%  Similarity=0.415  Sum_probs=40.5

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      |+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 h~~~h~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTG-EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSS-CCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCC-CCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6777877 9999999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=6.2e-14  Score=79.77  Aligned_cols=45  Identities=22%  Similarity=0.445  Sum_probs=40.7

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTG-EKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSC-CCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCC-CcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            36778877 8999999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=3.7e-14  Score=80.70  Aligned_cols=45  Identities=18%  Similarity=0.465  Sum_probs=41.1

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTG-EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSS-CCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCC-CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47778877 9999999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=5e-14  Score=80.16  Aligned_cols=45  Identities=18%  Similarity=0.348  Sum_probs=41.2

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSG-EKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCC-CSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCC-CCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            47788887 9999999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=4.8e-14  Score=80.21  Aligned_cols=45  Identities=22%  Similarity=0.355  Sum_probs=40.9

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTG-EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCC-CCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCC-CCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            47778877 9999999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.41  E-value=7.1e-14  Score=79.50  Aligned_cols=45  Identities=20%  Similarity=0.432  Sum_probs=40.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTG-EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCC-CCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCC-CcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            47778877 8999999999999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=8.3e-14  Score=79.21  Aligned_cols=45  Identities=18%  Similarity=0.256  Sum_probs=40.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|.+ ++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSR-EKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSC-CCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCC-CCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            36778877 8999999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=5.3e-14  Score=80.06  Aligned_cols=45  Identities=22%  Similarity=0.428  Sum_probs=40.9

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~h~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSG-EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCS-SCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCC-CcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            46778888 9999999999999999999999999999999999987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=3.1e-13  Score=84.86  Aligned_cols=54  Identities=28%  Similarity=0.565  Sum_probs=50.0

Q ss_pred             CceeCC--CCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhC
Q psy12030        175 GVFACN--VCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       175 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      ++|.|+  .|++.|.....|..|+++|++ ++||.|++||+.|...+.|..|+++|+
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHHHHC-CCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHhhCC-CCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            359997  599999999999999999998 999999999999999999999999874

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=3.7e-14  Score=80.69  Aligned_cols=45  Identities=20%  Similarity=0.436  Sum_probs=39.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTG-EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCC-CSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCC-CCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            46778877 8999999999999999999999999999999999887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=6.2e-14  Score=79.76  Aligned_cols=45  Identities=27%  Similarity=0.511  Sum_probs=40.9

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTG-EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSC-CCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCC-CCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47788888 9999999999999999999999999999999999876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=6.3e-14  Score=79.72  Aligned_cols=45  Identities=27%  Similarity=0.495  Sum_probs=41.4

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~h~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTG-EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSS-CCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCC-CCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            36778888 9999999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=9.4e-14  Score=78.99  Aligned_cols=45  Identities=16%  Similarity=0.344  Sum_probs=40.7

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~h~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSG-EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCC-CCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCC-CCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            36778877 9999999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.39  E-value=1.2e-13  Score=78.48  Aligned_cols=44  Identities=20%  Similarity=0.426  Sum_probs=40.1

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      |+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|.+|
T Consensus         3 h~~~h~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAG-VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCC-CCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCC-CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6677877 9999999999999999999999999999999999987

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.39  E-value=4.8e-13  Score=79.65  Aligned_cols=52  Identities=27%  Similarity=0.547  Sum_probs=28.7

Q ss_pred             cccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCC
Q psy12030        122 FACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQL  174 (245)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  174 (245)
                      |.|..|++.|.....|..|+++|++ +++|.|+.|++.|.....|..|++.|.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTD-VRPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS-CCCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCC-CCCccCCCCCchhcCHHHHHHHHHHhc
Confidence            5555666666666666666666555 555555555555555555555544443

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.1e-13  Score=78.66  Aligned_cols=44  Identities=23%  Similarity=0.530  Sum_probs=39.2

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      |+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         3 h~~~h~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSG-EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCS-CCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCC-CCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5677777 8999999999999999999999999999999999887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.38  E-value=3.3e-13  Score=79.53  Aligned_cols=46  Identities=20%  Similarity=0.205  Sum_probs=39.7

Q ss_pred             HhCCCCCcccCCCcccCCChHHHHHhHh-hhCCCCCCCCCCCCccccC
Q psy12030        199 ECGQEPKYQCPHCPHKAKHKANLKTHIA-IKHSDRILPPQEGRVWTRA  245 (245)
Q Consensus       199 h~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~C~~C~~~f~~  245 (245)
                      |.+ ++||.|++|++.|.....|..|++ +|++++||.|++|++.|.+
T Consensus         7 ~~~-~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSV-GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCS-SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCC-CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            344 889999999999999999999987 8889999999999999864

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2.3e-13  Score=83.74  Aligned_cols=56  Identities=18%  Similarity=0.432  Sum_probs=50.8

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHhCCCCCcccC-CCcccCCChHHHHHhHhhhCCCCC
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCP-HCPHKAKHKANLKTHIAIKHSDRI  233 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~-~C~~~f~~~~~l~~H~~~~~~~~~  233 (245)
                      ++|.|..|++.|. .+.|..|+++ ++ ++||.|+ .||+.|..++.|..|+++|-...|
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~-~~-~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ-CP-RLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH-CS-SSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCeeccccCCccC-HHHHHHHHHH-cC-CcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            3599999999999 9999999998 77 9999999 999999999999999998877665

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.38  E-value=4.5e-13  Score=86.31  Aligned_cols=62  Identities=23%  Similarity=0.389  Sum_probs=48.1

Q ss_pred             cccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhcCCccccCcCCCccCchhHHHhH
Q psy12030         61 PLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNLSGMFACDVCGKEYKYKRGLYRH  140 (245)
Q Consensus        61 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~C~~C~~~f~~~~~l~~H  140 (245)
                      ..++.+.++|.|++||+.|.....|..|+++|++ +++                       |.|.+|++.|.....|..|
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~-~k~-----------------------~~C~~C~k~F~~~~~L~~H   75 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHA-AQV-----------------------FPCKYCPATFYSSPGLTRH   75 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSC-SSS-----------------------EECTTSSCEESSHHHHHHH
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccC-CCc-----------------------cCCCCCCCEeCCHHHHHHh
Confidence            3455667889999999999999999999999988 666                       5555566667777777777


Q ss_pred             Hh-hhcC
Q psy12030        141 KK-FECG  146 (245)
Q Consensus       141 ~~-~h~~  146 (245)
                      ++ .|.+
T Consensus        76 ~~~~H~~   82 (85)
T 2lv2_A           76 INKCHPS   82 (85)
T ss_dssp             HHTTCTT
T ss_pred             CcccCcC
Confidence            64 3443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.37  E-value=2.6e-13  Score=80.83  Aligned_cols=51  Identities=29%  Similarity=0.570  Sum_probs=24.7

Q ss_pred             ccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcC
Q psy12030        121 MFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAP  172 (245)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~  172 (245)
                      +|.|.+|++.|.+...|..|+++|++ +++|.|+.|++.|.....|..|++.
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRTHTG-EKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHHHHC-CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCCcchhCChHHHHHHHHHcCC-CCCcCCCCCcchhCCHHHHHHHHHH
Confidence            34555555555555555555555554 4444444444444444444444433

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.8e-13  Score=78.10  Aligned_cols=45  Identities=18%  Similarity=0.378  Sum_probs=41.0

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHh-hhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIA-IKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~C~~C  239 (245)
                      .|+++|.+ ++||.|++||+.|...+.|..|++ +|++++||.|+.|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTG-KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCC-CCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCC-CCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            36778877 999999999999999999999999 9999999999987

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=2.3e-13  Score=83.65  Aligned_cols=59  Identities=24%  Similarity=0.428  Sum_probs=45.8

Q ss_pred             hhhcCCCCCccCCCCCCcCCChHHHHhhhcC-C-CC--ceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        142 KFECGQEPKYQCPHCPHRAKHKANLKTHIAP-Q-LG--VFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       142 ~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~--~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ++|.+ +++|.|+.|++.|.+...|..|++. | .+  +|.|+.|++.|...+.|..|+++||+
T Consensus         3 ~~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEG-EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEE-TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCC-CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            34556 7788888888888888888888776 5 23  48888888888888888888888875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2e-13  Score=77.59  Aligned_cols=45  Identities=20%  Similarity=0.514  Sum_probs=40.3

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSG-EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCC-CCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCC-CCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            36778877 9999999999999999999999999999999999875

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.34  E-value=2.9e-13  Score=79.78  Aligned_cols=52  Identities=19%  Similarity=0.342  Sum_probs=48.6

Q ss_pred             CCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCC
Q psy12030        183 GKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILP  235 (245)
Q Consensus       183 ~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  235 (245)
                      ++.|.....|..|+++|++ ++||.|++||+.|...+.|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQS-EQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTS-SCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCC-CCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4678899999999999998 999999999999999999999999999999984

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.6e-13  Score=76.51  Aligned_cols=44  Identities=18%  Similarity=0.397  Sum_probs=40.5

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTG-GKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSS-SCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCC-CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47788888 999999999999999999999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.34  E-value=3.4e-13  Score=75.02  Aligned_cols=42  Identities=19%  Similarity=0.345  Sum_probs=38.4

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      |+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         1 H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSG-ENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSS-CCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCC-CCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            5677877 99999999999999999999999999999999985

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.2e-13  Score=76.75  Aligned_cols=44  Identities=20%  Similarity=0.421  Sum_probs=40.4

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTG-EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCC-CCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCC-CcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            47788888 999999999999999999999999999999999975

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.34  E-value=6.4e-13  Score=75.10  Aligned_cols=42  Identities=21%  Similarity=0.384  Sum_probs=39.0

Q ss_pred             HHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCC
Q psy12030        198 EECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGR  240 (245)
Q Consensus       198 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~  240 (245)
                      .|++ ++||.|++|++.|...+.|..|+++|+++++|.|+.||
T Consensus         4 ~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSG-EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSS-CCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCC-CCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4556 99999999999999999999999999999999999997

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=4.1e-13  Score=85.45  Aligned_cols=64  Identities=22%  Similarity=0.402  Sum_probs=50.1

Q ss_pred             hcCCCCCccCCCCCCcCCChHHHHhhhcCCCC-----ceeCCCCCCccCChhHHHHHHhHHhCCCCCccc
Q psy12030        144 ECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG-----VFACNVCGKGYRYKTGLYRHKREECGQEPKYQC  208 (245)
Q Consensus       144 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-----~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  208 (245)
                      |++ +++|.|++|++.|.....|..|++.|.+     +|.|.+|++.|.....|..|++.+|..+++..-
T Consensus         2 h~~-~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            2 SSG-SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CCS-CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCC-CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            445 7888888888888888888888887753     589999999999999999998666654666554

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.9e-13  Score=76.36  Aligned_cols=44  Identities=18%  Similarity=0.469  Sum_probs=40.2

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSG-EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCC-SSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCC-CcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47788887 999999999999999999999999999999999975

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.3e-13  Score=76.18  Aligned_cols=44  Identities=23%  Similarity=0.435  Sum_probs=40.4

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTG-EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSS-CCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCC-CCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788888 999999999999999999999999999999999975

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=1.6e-12  Score=78.21  Aligned_cols=53  Identities=25%  Similarity=0.503  Sum_probs=30.2

Q ss_pred             ccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhh-cCCC
Q psy12030        121 MFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHI-APQL  174 (245)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~  174 (245)
                      +|.|..|++.|.....|..|+++|++ +++|.|+.|++.|.+...|..|+ +.|.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN-EKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTS-SCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCC-CCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            35566666666666666666666555 55555555555555555555553 3443

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.4e-12  Score=86.13  Aligned_cols=70  Identities=21%  Similarity=0.302  Sum_probs=54.3

Q ss_pred             ccccCcCCCccCchhHHHhHHhh-hcCCCCCccCCCCCCcCCChHHHHhhhcCCCCceeCCCCCCccCChhHHHHHHhHH
Q psy12030        121 MFACDVCGKEYKYKRGLYRHKKF-ECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~h  199 (245)
                      .+.|..|++.|.....|..|++. |.+ +++..+..|                  ..|.|.+|++.|.....|..|+++|
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~-~~~~~~~~c------------------~~~~C~~C~k~f~~~~~L~~H~~~H   85 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVG-GPEQNNHVC------------------YWEECPREGKSFKAKYKLVNHIRVH   85 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTC-CTTCSCCCC------------------CCTTCSSTTCCCSSHHHHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhccC-CCCCCccce------------------eccCCCCCCcccCCHHHHHHHHHhc
Confidence            36688888888888888888877 555 554333333                  1278999999999999999999999


Q ss_pred             hCCCCCcccCC
Q psy12030        200 CGQEPKYQCPH  210 (245)
Q Consensus       200 ~~~~~~~~C~~  210 (245)
                      ++ ++||.|+.
T Consensus        86 ~~-~k~~~C~~   95 (95)
T 2ej4_A           86 TG-EKSGPSSG   95 (95)
T ss_dssp             HT-CCCCSSCC
T ss_pred             CC-CCCCCCCC
Confidence            99 99999973

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.8e-13  Score=76.42  Aligned_cols=44  Identities=20%  Similarity=0.431  Sum_probs=40.4

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTG-EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSC-CCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCC-CcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            47778888 999999999999999999999999999999999975

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.33  E-value=3e-13  Score=76.87  Aligned_cols=44  Identities=20%  Similarity=0.416  Sum_probs=39.5

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTG-EKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCC-CCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCC-CCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47778877 999999999999999999999999999999999975

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.6e-13  Score=76.52  Aligned_cols=44  Identities=20%  Similarity=0.438  Sum_probs=39.7

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTG-EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCC-CCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCC-CCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            47778877 999999999999999999999999999999999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.6e-13  Score=76.52  Aligned_cols=44  Identities=23%  Similarity=0.433  Sum_probs=39.6

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTG-EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSS-CCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCC-CcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47778877 999999999999999999999999999999999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=4e-13  Score=76.32  Aligned_cols=44  Identities=20%  Similarity=0.373  Sum_probs=39.6

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTG-QRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCC-SSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCC-CcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            37778877 999999999999999999999999999999999975

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=6.7e-13  Score=73.78  Aligned_cols=42  Identities=17%  Similarity=0.309  Sum_probs=38.5

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      |+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|.
T Consensus         1 H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSG-EKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCS-CCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCC-CCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5677877 99999999999999999999999999999999984

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.9e-13  Score=76.36  Aligned_cols=44  Identities=23%  Similarity=0.443  Sum_probs=40.0

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTG-ERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCC-CCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCC-CCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47778887 999999999999999999999999999999999975

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.7e-13  Score=76.02  Aligned_cols=44  Identities=20%  Similarity=0.434  Sum_probs=40.2

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMG-EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCC-CCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCC-CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47778888 999999999999999999999999999999999975

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.5e-13  Score=75.44  Aligned_cols=44  Identities=27%  Similarity=0.459  Sum_probs=40.2

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTG-ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCS-CCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCC-CCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47778887 999999999999999999999999999999999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.8e-13  Score=75.65  Aligned_cols=44  Identities=18%  Similarity=0.415  Sum_probs=40.1

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSG-KKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCCSCCC-SCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCCcCC-CCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778877 999999999999999999999999999999999975

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.8e-13  Score=75.97  Aligned_cols=44  Identities=25%  Similarity=0.488  Sum_probs=40.4

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTG-EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCC-SCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCC-CCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788888 999999999999999999999999999999999975

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.2e-13  Score=76.23  Aligned_cols=44  Identities=23%  Similarity=0.421  Sum_probs=39.9

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTG-EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCS-CCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCC-CcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            47778887 999999999999999999999999999999999975

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.32  E-value=9.1e-13  Score=75.57  Aligned_cols=39  Identities=10%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCCc
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRV  241 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~  241 (245)
                      +++|.|++|++.|.....|..|+++|++++||.|.+|+|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            889999999999999999999999999999999999986

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.3e-13  Score=75.51  Aligned_cols=43  Identities=21%  Similarity=0.436  Sum_probs=39.6

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      |+++|.+ ++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 h~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTG-EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSS-CCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCC-CcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            6677877 999999999999999999999999999999999975

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.2e-13  Score=75.52  Aligned_cols=44  Identities=23%  Similarity=0.458  Sum_probs=39.7

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTG-ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSS-CCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCC-CCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            47778877 999999999999999999999999999999999975

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.2e-13  Score=76.24  Aligned_cols=44  Identities=20%  Similarity=0.432  Sum_probs=39.9

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTG-EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSS-CCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCC-CCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788888 999999999999999999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.2e-13  Score=76.20  Aligned_cols=44  Identities=20%  Similarity=0.423  Sum_probs=39.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTG-EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCC-CCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCC-CCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46778877 999999999999999999999999999999999975

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.9e-13  Score=74.34  Aligned_cols=42  Identities=21%  Similarity=0.390  Sum_probs=38.9

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP  236 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  236 (245)
                      .|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|
T Consensus         1 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGG-EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCS-CCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCC-CCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            36788888 9999999999999999999999999999999988

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5.5e-13  Score=75.73  Aligned_cols=44  Identities=23%  Similarity=0.462  Sum_probs=39.3

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTG-EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSC-CCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCC-CcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47778877 899999999999999999999999999999999975

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=9e-13  Score=74.83  Aligned_cols=44  Identities=16%  Similarity=0.403  Sum_probs=39.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~h~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAG-KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCS-SCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCC-CCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36778877 999999999999999999999999999999999975

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6e-13  Score=74.77  Aligned_cols=43  Identities=16%  Similarity=0.256  Sum_probs=39.4

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      .|+++|++ ++||.|++||+.|...+.|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTG-MKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSS-SSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCC-CcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            47788888 99999999999999999999999999999999985

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.5e-13  Score=75.44  Aligned_cols=43  Identities=23%  Similarity=0.473  Sum_probs=38.8

Q ss_pred             HhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        196 KREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       196 ~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +++|++ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         4 ~~~h~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTG-EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTT-CCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCC-CCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            456777 8999999999999999999999999999999999987

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.7e-13  Score=76.01  Aligned_cols=44  Identities=27%  Similarity=0.480  Sum_probs=39.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTG-EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCC-CCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCC-CCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47778887 999999999999999999999999999999999975

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=5.1e-13  Score=75.88  Aligned_cols=44  Identities=23%  Similarity=0.435  Sum_probs=39.6

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTG-EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCS-CCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccCC-CCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            47788877 999999999999999999999999999999999975

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.7e-13  Score=74.58  Aligned_cols=43  Identities=21%  Similarity=0.359  Sum_probs=38.9

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTG-EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSC-CCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCC-CCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            47778877 99999999999999999999999999999999985

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=7.5e-13  Score=75.18  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=38.5

Q ss_pred             HhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        196 KREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       196 ~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      +++|.+ ++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         4 ~~~h~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEG-EKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSC-CCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCC-CCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345666 8999999999999999999999999999999999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=7.3e-13  Score=74.44  Aligned_cols=43  Identities=19%  Similarity=0.284  Sum_probs=39.6

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTG-ENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSS-CCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCC-CcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            47788888 99999999999999999999999999999999985

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=5.9e-13  Score=74.85  Aligned_cols=43  Identities=14%  Similarity=0.257  Sum_probs=39.0

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      +|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAG-ENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSC-CCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCC-CCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            47778877 99999999999999999999999999999999985

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.4e-13  Score=75.17  Aligned_cols=44  Identities=25%  Similarity=0.462  Sum_probs=40.5

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTG-EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCC-CCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCC-CCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788888 999999999999999999999999999999999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=9.7e-13  Score=73.15  Aligned_cols=41  Identities=24%  Similarity=0.447  Sum_probs=37.9

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP  236 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  236 (245)
                      |+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         2 H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGG-EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSS-SCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCC-CCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            5677877 9999999999999999999999999999999988

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.3e-12  Score=74.18  Aligned_cols=43  Identities=23%  Similarity=0.480  Sum_probs=39.3

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      |+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         3 h~~~h~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTG-EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-SSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCC-CCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5677877 999999999999999999999999999999999975

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.28  E-value=4e-12  Score=79.43  Aligned_cols=52  Identities=27%  Similarity=0.568  Sum_probs=48.4

Q ss_pred             ceeCCC--CCCccCChhHHHHHHhHHhCCCCCcccCC--CcccCCChHHHHHhHhhh
Q psy12030        176 VFACNV--CGKGYRYKTGLYRHKREECGQEPKYQCPH--CPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       176 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~  228 (245)
                      +|.|..  |++.|.....|..|+++|++ ++||.|++  |++.|.....|..|+++|
T Consensus        17 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           17 SHICSHPGCGKTYFKSSHLKAHTRTHTG-EKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CEECSSTTTCCEESSHHHHHHHHHHHSS-SCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ceeCCCCCCccccCCHHHHHHHHHhcCC-CCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            499988  99999999999999999988 99999975  999999999999999875

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7.4e-13  Score=75.21  Aligned_cols=44  Identities=16%  Similarity=0.435  Sum_probs=39.6

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .|+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         2 ~h~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSG-ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSC-CCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCCC-CCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46778877 999999999999999999999999999999999975

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.28  E-value=1.3e-13  Score=83.74  Aligned_cols=47  Identities=9%  Similarity=0.176  Sum_probs=28.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCCcccc
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTR  244 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~  244 (245)
                      .|+++|++ ++||.|+.||+.|...+.|.   ++|++++||.|++||+.|.
T Consensus         4 ~h~~~H~~-~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~   50 (62)
T 1vd4_A            4 TDERDSTN-RASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVE   50 (62)
T ss_dssp             CCSSSCCS-SSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCE
T ss_pred             hHHHHcCC-CCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccc
Confidence            45555555 66666666666666666554   5566666666666666653

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.27  E-value=1.3e-12  Score=72.62  Aligned_cols=41  Identities=17%  Similarity=0.279  Sum_probs=37.4

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP  236 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  236 (245)
                      |+++|.+ ++||.|++||+.|...+.|..|+++|++++||.|
T Consensus         2 H~~~H~~-~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGG-ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCS-SCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCC-CCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            5677777 9999999999999999999999999999999987

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.4e-12  Score=73.31  Aligned_cols=43  Identities=12%  Similarity=0.232  Sum_probs=38.8

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      .|+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHT-RKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCC-CSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCC-CCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            47778877 89999999999999999999999999999999985

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8.9e-13  Score=73.27  Aligned_cols=41  Identities=22%  Similarity=0.413  Sum_probs=36.9

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP  236 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  236 (245)
                      |+++|++ ++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         2 H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGG-EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCS-SCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCC-CCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            5677877 8999999999999999999999999999999987

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1e-12  Score=74.62  Aligned_cols=44  Identities=16%  Similarity=0.234  Sum_probs=40.1

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCC-CCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS-DRILPPQE  238 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~-~~~~~C~~  238 (245)
                      .|+++|.+ ++||.|++|++.|...+.|..|+++|++ ++||.|++
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQK-EKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCC-SCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCccccCC-CCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            36778877 9999999999999999999999999999 99999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.2e-12  Score=72.42  Aligned_cols=42  Identities=14%  Similarity=0.252  Sum_probs=38.3

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      |+++|.+ ++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         3 h~~~h~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAA-KTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSS-SCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCC-CcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            5677877 99999999999999999999999999999999985

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=7e-13  Score=75.27  Aligned_cols=43  Identities=19%  Similarity=0.330  Sum_probs=38.4

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTG-EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCC-CCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCC-CCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            47778877 89999999999999999999999999999999986

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.25  E-value=9.6e-12  Score=77.89  Aligned_cols=52  Identities=27%  Similarity=0.625  Sum_probs=38.7

Q ss_pred             cccC--cCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCC
Q psy12030        122 FACD--VCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQL  174 (245)
Q Consensus       122 ~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  174 (245)
                      |.|.  .|++.|.....|..|++.|.+ +++|.|++|++.|.....|.+|+++|+
T Consensus        20 ~~C~~~~C~k~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           20 YACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             EECSSTTBCCEESSHHHHHHHHHHHHC-CCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCcCCCCCCccCCHHHHHHHHHhhCC-CCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            5564  477777777788888887777 777777777777777777777777663

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.2e-12  Score=73.61  Aligned_cols=43  Identities=14%  Similarity=0.210  Sum_probs=38.9

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~-~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTD-SKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCC-CCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCC-CCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            46778887 99999999999999999999999999999999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=6.7e-12  Score=70.05  Aligned_cols=40  Identities=28%  Similarity=0.498  Sum_probs=36.2

Q ss_pred             HHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        198 EECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       198 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      +|++ ++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         4 ~h~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSG-NGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSS-SCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCC-CCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            4666 899999999999999999999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.5e-12  Score=71.59  Aligned_cols=43  Identities=19%  Similarity=0.216  Sum_probs=38.7

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      .|+++|++ ++||.|++|++.|...+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            2 SSGSSGSG-EKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCC-CCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCcccCC-CcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            47788888 99999999999999999999999999999999873

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=4.8e-12  Score=71.75  Aligned_cols=42  Identities=19%  Similarity=0.317  Sum_probs=37.8

Q ss_pred             HhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        196 KREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       196 ~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      +++|++ ++||.|++|++.|...+.|..|+++|++++||.|.+
T Consensus         4 ~~~h~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHG-ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC-CSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCC-CCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            456767 999999999999999999999999999999999975

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.2e-12  Score=72.67  Aligned_cols=44  Identities=18%  Similarity=0.353  Sum_probs=39.3

Q ss_pred             HHhHHhCCCCCcccC--CCcccCCChHHHHHhHhhhCCCCCCCCCCC
Q psy12030        195 HKREECGQEPKYQCP--HCPHKAKHKANLKTHIAIKHSDRILPPQEG  239 (245)
Q Consensus       195 H~~~h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C  239 (245)
                      |.++|++ ++||.|.  .|++.|...+.|..|+++|++++||.|.+|
T Consensus         3 ~~~~H~~-~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTG-EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCC-CCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCC-CCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4466777 9999998  899999999999999999999999999987

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.7e-12  Score=71.87  Aligned_cols=42  Identities=26%  Similarity=0.528  Sum_probs=37.6

Q ss_pred             HhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        196 KREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       196 ~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      .++|.+ ++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         4 ~~~h~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTG-QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCS-CCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCC-CcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            456767 999999999999999999999999999999999974

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.19  E-value=1.6e-11  Score=69.54  Aligned_cols=43  Identities=26%  Similarity=0.456  Sum_probs=37.9

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|++  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSS-CCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            46777765  49999999999999999999999988 999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.7e-11  Score=69.46  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=38.6

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|++  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHC-CSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            47777776  49999999999999999999999998 999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.7e-11  Score=69.40  Aligned_cols=43  Identities=23%  Similarity=0.494  Sum_probs=38.6

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHC-SSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            46777776  49999999999999999999999998 999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.7e-11  Score=69.36  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=38.3

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|++  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSC-CCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            46777775  49999999999999999999999988 999999988

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.9e-11  Score=69.19  Aligned_cols=43  Identities=26%  Similarity=0.460  Sum_probs=38.4

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|.+  +|.|++||+.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTT-SCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCC-CCCCCCCCC
Confidence            46777775  49999999999999999999999988 999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.9e-11  Score=69.19  Aligned_cols=43  Identities=26%  Similarity=0.375  Sum_probs=38.3

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSS-SSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCC-CCCCCCCCC
Confidence            46777775  49999999999999999999999988 999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2e-11  Score=69.08  Aligned_cols=43  Identities=21%  Similarity=0.376  Sum_probs=38.7

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|.+  +|.|++||+.|...+.|..|+++|++ ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFR-EKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHS-TTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcC-CCCCCCCCC
Confidence            57777776  49999999999999999999999998 999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.18  E-value=1.9e-11  Score=69.19  Aligned_cols=43  Identities=23%  Similarity=0.414  Sum_probs=37.8

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|++  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGC-CCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            46777765  49999999999999999999999988 999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.1e-11  Score=68.97  Aligned_cols=43  Identities=23%  Similarity=0.454  Sum_probs=37.7

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG-ERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSC-CSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            46777765  49999999999999999999999988 999999987

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.1e-11  Score=68.35  Aligned_cols=38  Identities=21%  Similarity=0.413  Sum_probs=34.9

Q ss_pred             HHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCC
Q psy12030        198 EECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP  236 (245)
Q Consensus       198 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  236 (245)
                      +|++ ++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         4 ~h~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSG-QRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCC-CCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCC-CCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4666 8999999999999999999999999999999988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.6e-11  Score=69.53  Aligned_cols=43  Identities=23%  Similarity=0.430  Sum_probs=37.3

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|++  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSC-SCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            46777775  49999999999999999999999988 999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=2.6e-11  Score=67.90  Aligned_cols=42  Identities=21%  Similarity=0.341  Sum_probs=37.2

Q ss_pred             hhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        169 HIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       169 H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      |+++|.+  +|.|++||+.|...+.|..|+++|++ ++||.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAE-EKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTS-SCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            4566665  49999999999999999999999988 999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.2e-11  Score=68.95  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=37.3

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|++  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTC-CCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            46677765  49999999999999999999999988 999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.4e-11  Score=68.74  Aligned_cols=43  Identities=23%  Similarity=0.395  Sum_probs=38.3

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTG-YRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTC-CCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCC-CCCCCCCCC
Confidence            46777775  49999999999999999999999988 999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2e-11  Score=69.14  Aligned_cols=43  Identities=26%  Similarity=0.433  Sum_probs=38.3

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|++  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTG-GKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHS-CCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            46777765  49999999999999999999999999 999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.3e-11  Score=68.85  Aligned_cols=43  Identities=16%  Similarity=0.389  Sum_probs=37.7

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|++  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK-QKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSC-CCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            46777775  49999999999999999999999988 999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.16  E-value=2.4e-11  Score=68.78  Aligned_cols=43  Identities=26%  Similarity=0.456  Sum_probs=37.6

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      .|+++|++  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSC-CSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            36677765  49999999999999999999999988 999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.1e-11  Score=68.29  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=41.5

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSS-CCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            577889999999999999999999999999999988 889999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3e-11  Score=68.37  Aligned_cols=45  Identities=22%  Similarity=0.341  Sum_probs=41.6

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG-KKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSS-CCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcC-CCCCCCCCC
Confidence            577889999999999999999999999999999988 889999877

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.6e-11  Score=68.59  Aligned_cols=45  Identities=22%  Similarity=0.300  Sum_probs=41.5

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCC-CCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCC-CCCCCCCCC
Confidence            577889999999999999999999999999999987 889999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.15  E-value=3e-11  Score=68.35  Aligned_cols=45  Identities=18%  Similarity=0.208  Sum_probs=41.5

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG-VKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSS-CCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            577889999999999999999999999999999988 889999876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.3e-11  Score=68.84  Aligned_cols=43  Identities=28%  Similarity=0.445  Sum_probs=38.3

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      +|+++|++  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSS-CCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCC-CCCCCCCCC
Confidence            46777776  49999999999999999999999988 999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=2.8e-11  Score=71.04  Aligned_cols=42  Identities=21%  Similarity=0.437  Sum_probs=37.7

Q ss_pred             CceeCCCCCCccCChhHHHHHHh-HHhCCCCCcccCCCcccCCC
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKR-EECGQEPKYQCPHCPHKAKH  217 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~C~~~f~~  217 (245)
                      .+|.|++|++.|.....|..|++ +|.+ ++||.|++|++.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~-~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIKQVHTS-ERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCC-CCCCCSSSSCCSSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC-CCCccCCCCCCCCCC
Confidence            35999999999999999999997 7877 999999999999976

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.2e-11  Score=68.26  Aligned_cols=45  Identities=22%  Similarity=0.289  Sum_probs=41.5

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSC-CCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCC-CCCCCCCCC
Confidence            477889999999999999999999999999999988 889999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.3e-11  Score=68.21  Aligned_cols=45  Identities=27%  Similarity=0.315  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSC-SSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            477889999999999999999999999999999987 889999876

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.8e-11  Score=67.94  Aligned_cols=42  Identities=19%  Similarity=0.347  Sum_probs=37.0

Q ss_pred             hhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        169 HIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       169 H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      |+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG-QRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHS-CCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            5666765  48999999999999999999999998 999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.5e-11  Score=68.08  Aligned_cols=45  Identities=29%  Similarity=0.391  Sum_probs=41.5

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSS-CCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            577889999999999999999999999999999988 889999876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.5e-11  Score=68.05  Aligned_cols=45  Identities=18%  Similarity=0.226  Sum_probs=41.5

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTG-VKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSC-CCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            477889999999999999999999999999999988 889999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=4.4e-11  Score=67.65  Aligned_cols=45  Identities=22%  Similarity=0.303  Sum_probs=41.3

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTT-CCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            467888999999999999999999999999999987 889999877

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.7e-11  Score=67.98  Aligned_cols=45  Identities=22%  Similarity=0.298  Sum_probs=41.3

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCC-CCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            467888999999999999999999999999999987 889999877

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.13  E-value=3.6e-11  Score=68.04  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSS-SSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCC-CCCcCCCCC
Confidence            477889999999999999999999999999999987 889999877

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.3e-11  Score=68.18  Aligned_cols=45  Identities=20%  Similarity=0.254  Sum_probs=41.5

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCS-SSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCC-CCCCCCCCC
Confidence            577889999999999999999999999999999987 889999877

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.6e-11  Score=67.56  Aligned_cols=45  Identities=27%  Similarity=0.395  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG-EKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSC-CCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            577889999999999999999999999999999987 889999877

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.8e-11  Score=67.49  Aligned_cols=45  Identities=22%  Similarity=0.337  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG-EKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGS-CCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            467788999999999999999999999999999988 889999877

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.12  E-value=5e-11  Score=67.39  Aligned_cols=45  Identities=20%  Similarity=0.353  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSG-EKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTS-CCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCC-CCCCCCCCC
Confidence            477889999999999999999999999999999987 889999877

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=5.4e-11  Score=67.27  Aligned_cols=42  Identities=29%  Similarity=0.450  Sum_probs=37.4

Q ss_pred             hhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        169 HIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       169 H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      |+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG-EKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHC-CCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcC-CCCCCCCCC
Confidence            5666665  49999999999999999999999998 999999988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.2e-11  Score=67.74  Aligned_cols=45  Identities=22%  Similarity=0.235  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG-EKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCC-SCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCC-CCCCCCCCC
Confidence            477889999999999999999999999999999987 889999877

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=4.4e-11  Score=67.62  Aligned_cols=45  Identities=22%  Similarity=0.273  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG-EKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCC-SCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            477889999999999999999999999999999988 889999877

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.6e-11  Score=67.99  Aligned_cols=45  Identities=18%  Similarity=0.231  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD-DKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCS-CCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            577889999999999999999999999999999987 889999877

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=5e-11  Score=67.39  Aligned_cols=45  Identities=22%  Similarity=0.287  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCC-CSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            477889999999999999999999999999999987 888999877

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.3e-11  Score=67.70  Aligned_cols=45  Identities=24%  Similarity=0.341  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTT-CCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            477889999999999999999999999999999988 889999876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.2e-11  Score=67.70  Aligned_cols=45  Identities=22%  Similarity=0.289  Sum_probs=41.3

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG-ENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTT-SCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            577889999999999999999999999999999987 889999876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.7e-11  Score=67.53  Aligned_cols=45  Identities=24%  Similarity=0.314  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|++++.++++|.|++|++.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG-ERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCS-CCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCC-CCCCCCCCC
Confidence            477888999999999999999999999999999987 889999877

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.9e-11  Score=67.84  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTT-CSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            477889999999999999999999999999999987 889999877

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=4.9e-11  Score=67.44  Aligned_cols=45  Identities=16%  Similarity=0.166  Sum_probs=41.4

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMG-QKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSC-CSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            467889999999999999999999999999999988 889999877

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.10  E-value=6.1e-11  Score=67.08  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=41.2

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR-EKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCC-SSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            467788999999999999999999999999999988 889999877

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=5.8e-11  Score=67.13  Aligned_cols=45  Identities=20%  Similarity=0.264  Sum_probs=41.2

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++|++.|.....|..|++.|.+ +++|.|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG-EKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCC-SSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCC-CCCCCCCCC
Confidence            467888999999999999999999999999999987 889999877

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3e-11  Score=74.09  Aligned_cols=51  Identities=22%  Similarity=0.441  Sum_probs=23.9

Q ss_pred             CCccCCCCCCcCCChHHHHhhhcCCCC--ceeCC-CCCCccCChhHHHHHHhHHhC
Q psy12030        149 PKYQCPHCPHRAKHKANLKTHIAPQLG--VFACN-VCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       149 ~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~C~-~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ++|.|+.|++.|. ...|..|+++ .+  +|.|+ .||+.|...+.|..|+++|.+
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             CCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcc
Confidence            3444444444444 4444444433 22  25555 555555555555555555443

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=6.5e-11  Score=66.92  Aligned_cols=45  Identities=20%  Similarity=0.285  Sum_probs=41.1

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTT-SCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            577889999999999999999999999999999987 889999875

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.09  E-value=1.3e-10  Score=72.46  Aligned_cols=53  Identities=26%  Similarity=0.536  Sum_probs=42.9

Q ss_pred             CccccCc--CCCccCchhHHHhHHhhhcCCCCCccCCC--CCCcCCChHHHHhhhcCC
Q psy12030        120 GMFACDV--CGKEYKYKRGLYRHKKFECGQEPKYQCPH--CPHRAKHKANLKTHIAPQ  173 (245)
Q Consensus       120 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  173 (245)
                      ++|.|..  |++.|.....|..|+++|++ +++|.|++  |++.|.....|..|+++|
T Consensus        16 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           16 RSHICSHPGCGKTYFKSSHLKAHTRTHTG-EKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCEECSSTTTCCEESSHHHHHHHHHHHSS-SCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CceeCCCCCCccccCCHHHHHHHHHhcCC-CCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3577877  88888888888888888888 88888864  888888888888887765

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=9.9e-11  Score=66.16  Aligned_cols=43  Identities=28%  Similarity=0.422  Sum_probs=37.5

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      .|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCC-CCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            36677765  49999999999999999999999988 999999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.1e-10  Score=66.30  Aligned_cols=45  Identities=24%  Similarity=0.265  Sum_probs=41.0

Q ss_pred             CccccccCCCceecccccccccChhHHhcchh-cccCCCCCccCCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQ-DECGQEPKYQCPQC  104 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~C  104 (245)
                      .|+++|.++++|.|++||+.|.....|..|++ +|.+ +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~-~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG-EKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTT-SCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCC-CCCCCCCCC
Confidence            47788999999999999999999999999999 8877 889999877

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.8e-10  Score=65.07  Aligned_cols=42  Identities=24%  Similarity=0.471  Sum_probs=36.8

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH  210 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  210 (245)
                      +|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCC-CCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            46777776  49999999999999999999999988 99999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.04  E-value=1.9e-10  Score=64.99  Aligned_cols=42  Identities=26%  Similarity=0.460  Sum_probs=36.7

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH  210 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  210 (245)
                      +|+++|.+  +|.|++|++.|.....|..|+++|++ ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTT-SCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            46777775  49999999999999999999999988 99999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.03  E-value=1.6e-10  Score=62.79  Aligned_cols=38  Identities=18%  Similarity=0.386  Sum_probs=33.5

Q ss_pred             HhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        199 ECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       199 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      |.+ ++||.|++||+.|...+.|..|+++|++++||.+.
T Consensus         1 h~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            1 XWP-PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             -CC-SSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCC-CCceECCCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            345 89999999999999999999999999999999763

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=2.1e-10  Score=64.78  Aligned_cols=42  Identities=26%  Similarity=0.503  Sum_probs=36.6

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH  210 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  210 (245)
                      .|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG-EKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSS-SSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCC-CCCCCCCC
Confidence            46777775  49999999999999999999999988 99999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.4e-10  Score=64.51  Aligned_cols=42  Identities=24%  Similarity=0.435  Sum_probs=36.7

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH  210 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  210 (245)
                      .|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG-EKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHS-CCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCC-CCCCCCCC
Confidence            46677765  49999999999999999999999998 99999974

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.9e-10  Score=64.95  Aligned_cols=44  Identities=23%  Similarity=0.358  Sum_probs=40.0

Q ss_pred             ccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         60 WPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        60 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      ++++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSS-SCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCC-CCCCCCCCC
Confidence            45678889999999999999999999999999987 889999877

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.02  E-value=2.9e-10  Score=68.55  Aligned_cols=38  Identities=29%  Similarity=0.352  Sum_probs=33.9

Q ss_pred             hCCCCCcccCC--CcccCCChHHHHHhH-hhhCCCCCCCCCC
Q psy12030        200 CGQEPKYQCPH--CPHKAKHKANLKTHI-AIKHSDRILPPQE  238 (245)
Q Consensus       200 ~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~~~~~~~~C~~  238 (245)
                      .+ +|||+|++  |+++|+..+.|..|+ ++|++++||.|..
T Consensus        23 sG-EKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           23 SP-YRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             CS-SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cC-CCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            45 99999975  999999999999997 6899999999976

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=1.6e-10  Score=64.91  Aligned_cols=43  Identities=26%  Similarity=0.412  Sum_probs=39.3

Q ss_pred             ccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCCc
Q psy12030         62 LVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCK  105 (245)
Q Consensus        62 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~  105 (245)
                      .+|+++++|.|++|++.|.....|..|+++|.+ +++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~-~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG-SVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSC-CCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccC-CCCCCCcCCC
Confidence            357788999999999999999999999999988 8899999886

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=2.3e-10  Score=65.30  Aligned_cols=43  Identities=28%  Similarity=0.536  Sum_probs=38.8

Q ss_pred             cccCCCceecccccccccChhHHhcchhcccCCCCCccCCCCcc
Q psy12030         63 VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKD  106 (245)
Q Consensus        63 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~  106 (245)
                      .+..+++|.|++|++.|.....|..|+++|.+ +++|.|++|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSG-EKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCS-CCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCC-CCCccCCCCCC
Confidence            45677899999999999999999999999988 88999999875

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.1e-10  Score=64.05  Aligned_cols=42  Identities=26%  Similarity=0.437  Sum_probs=35.9

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH  210 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  210 (245)
                      +|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTS-SCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCC-CCCCCCCC
Confidence            36667765  49999999999999999999999988 99999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.9e-10  Score=64.17  Aligned_cols=44  Identities=23%  Similarity=0.301  Sum_probs=40.1

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSC-CCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            477889999999999999999999999999999987 88898874

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.3e-10  Score=63.92  Aligned_cols=44  Identities=23%  Similarity=0.291  Sum_probs=40.1

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG-EKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCS-CCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCC-CCCCCCCC
Confidence            577889999999999999999999999999999987 88888863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.7e-10  Score=64.28  Aligned_cols=44  Identities=20%  Similarity=0.342  Sum_probs=40.1

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCC-CSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCC-CCCCCCCC
Confidence            577889999999999999999999999999999988 88898874

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.9e-10  Score=64.15  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=40.0

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTT-SSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCC-CCCCCCCC
Confidence            477889999999999999999999999999999988 88898874

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.99  E-value=1e-10  Score=70.72  Aligned_cols=54  Identities=11%  Similarity=0.185  Sum_probs=44.4

Q ss_pred             CCCccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHH
Q psy12030         57 FNIWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAF  114 (245)
Q Consensus        57 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l  114 (245)
                      |..|+++|.++++|.|+.||+.|.....|.   ++|.+ +++|.|+.|++.|.....+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~-~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPM-TGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETT-TTEEBCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCC-CCCEECCCCCCccccCccc
Confidence            567888899999999999999999988887   67766 8888888888887655443

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.3e-10  Score=63.94  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=40.0

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTG-ERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSC-CCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            477888999999999999999999999999999988 88898864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.99  E-value=3.5e-10  Score=62.49  Aligned_cols=42  Identities=24%  Similarity=0.387  Sum_probs=38.0

Q ss_pred             ccccccCCCceecccccccccChhHHhcchhcccCCCCCccCC
Q psy12030         60 WPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCP  102 (245)
Q Consensus        60 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  102 (245)
                      |+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAG-ESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCC-CCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCC-CCCCCCC
Confidence            46678889999999999999999999999999988 8888884

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.9e-10  Score=63.59  Aligned_cols=44  Identities=25%  Similarity=0.331  Sum_probs=40.0

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSS-CCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCC-CCCcCCCC
Confidence            477889999999999999999999999999999987 88998874

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.8e-10  Score=64.23  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=36.6

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH  210 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  210 (245)
                      +|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ-ETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSS-CCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            46777775  49999999999999999999999988 99999973

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.3e-10  Score=63.91  Aligned_cols=44  Identities=25%  Similarity=0.306  Sum_probs=40.1

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCS-SSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            477888999999999999999999999999999988 88898874

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.6e-10  Score=63.79  Aligned_cols=41  Identities=27%  Similarity=0.521  Sum_probs=36.2

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCP  209 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  209 (245)
                      +|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG-ERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTC-CCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCC-CCCCCCC
Confidence            46777775  49999999999999999999999988 9999996

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.1e-10  Score=64.07  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=34.7

Q ss_pred             cCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC
Q psy12030        171 APQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC  211 (245)
Q Consensus       171 ~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  211 (245)
                      ++|.+  +|.|++|++.|.....|..|+++|++ ++||.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR-EKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHH-CCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            44544  48999999999999999999999998 999999987

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.6e-10  Score=63.75  Aligned_cols=44  Identities=23%  Similarity=0.341  Sum_probs=40.0

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCC-CCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCC-CCCCCCCC
Confidence            477889999999999999999999999999999987 88898864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.5e-10  Score=63.80  Aligned_cols=44  Identities=27%  Similarity=0.341  Sum_probs=40.1

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTG-ENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSS-SCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            577889999999999999999999999999999988 88898874

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.98  E-value=5e-10  Score=58.41  Aligned_cols=33  Identities=24%  Similarity=0.496  Sum_probs=28.9

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCCCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDRILPP  236 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C  236 (245)
                      +||.|++||+.|...+.|..|+++|++++||+.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            578999999999999999999999999998863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.6e-10  Score=63.77  Aligned_cols=44  Identities=23%  Similarity=0.350  Sum_probs=40.0

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSS-SCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCC-CCCCCCCC
Confidence            477888999999999999999999999999999987 88998874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.8e-10  Score=63.73  Aligned_cols=44  Identities=25%  Similarity=0.365  Sum_probs=39.8

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG-ERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTS-CCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCC-CCCCCCCC
Confidence            467788999999999999999999999999999987 88898874

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=4.2e-10  Score=63.45  Aligned_cols=44  Identities=23%  Similarity=0.317  Sum_probs=40.0

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSS-CCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCC-CCCCCCCC
Confidence            477889999999999999999999999999999987 88898864

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.97  E-value=2.7e-10  Score=61.01  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=32.7

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      |+++|.+ ++||.|+.|++.|...+.|..|+++|+++
T Consensus         2 H~~~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTG-IKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCC-SSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCC-CCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            6778888 99999999999999999999999999875

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5e-10  Score=63.18  Aligned_cols=44  Identities=27%  Similarity=0.420  Sum_probs=39.8

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTT-CCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCC-CCCCCCCC
Confidence            467788999999999999999999999999999987 88898864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.6e-10  Score=63.79  Aligned_cols=44  Identities=23%  Similarity=0.311  Sum_probs=39.9

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSC-SCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCC-CCCCCCCC
Confidence            467788999999999999999999999999999988 88898864

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.1e-10  Score=61.45  Aligned_cols=36  Identities=22%  Similarity=0.488  Sum_probs=32.2

Q ss_pred             hHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCC
Q psy12030        197 REECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRI  233 (245)
Q Consensus       197 ~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  233 (245)
                      ++|.+ ++||.|++|++.|...+.|..|+++|++++|
T Consensus         2 ~~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSS-GRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCC-CCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCC-CCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            45666 9999999999999999999999999999875

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.7e-10  Score=63.02  Aligned_cols=43  Identities=21%  Similarity=0.308  Sum_probs=39.3

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCP  102 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  102 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSG-QSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSS-SCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCC-CCCCCCC
Confidence            578889999999999999999999999999999987 8888884

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.2e-10  Score=63.48  Aligned_cols=44  Identities=20%  Similarity=0.304  Sum_probs=39.8

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCC-SCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            477888999999999999999999999999999987 88898864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.6e-10  Score=61.58  Aligned_cols=41  Identities=22%  Similarity=0.286  Sum_probs=37.6

Q ss_pred             ccccccCCCceecccccccccChhHHhcchhcccCCCCCccC
Q psy12030         60 WPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC  101 (245)
Q Consensus        60 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  101 (245)
                      |+.++.++++|.|++||+.|.....|..|+++|.+ +++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG-SGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSC-CSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCC-CCCCCC
Confidence            67788999999999999999999999999999987 888876

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.2e-10  Score=63.50  Aligned_cols=42  Identities=29%  Similarity=0.449  Sum_probs=35.9

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH  210 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  210 (245)
                      +|+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSR-EKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHH-TTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            46677765  49999999999999999999999998 99999973

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.5e-10  Score=62.68  Aligned_cols=43  Identities=23%  Similarity=0.321  Sum_probs=39.1

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCP  102 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  102 (245)
                      .|+.+|.++++|.|++|++.|.....|..|+++|.+ +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTG-ESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTT-SSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCC-CCCCCCC
Confidence            577889999999999999999999999999999987 8888874

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.3e-10  Score=62.77  Aligned_cols=43  Identities=23%  Similarity=0.284  Sum_probs=39.1

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCP  102 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  102 (245)
                      .|+++|.++++|.|++||+.|.....|..|+++|.+ +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG-ESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCC-SSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCC-CCCCCCC
Confidence            577889999999999999999999999999999987 8888884

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=6.6e-10  Score=62.01  Aligned_cols=43  Identities=14%  Similarity=0.302  Sum_probs=39.1

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCP  102 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  102 (245)
                      .|+.+|.++++|.|++|++.|.....|..|+++|.+ +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAA-KSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCC-CCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCC-CCCcCCC
Confidence            577889999999999999999999999999999987 8888874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.1e-10  Score=63.53  Aligned_cols=44  Identities=23%  Similarity=0.271  Sum_probs=39.8

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTG-ERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSS-CCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            467788999999999999999999999999999987 88898863

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5.4e-10  Score=63.03  Aligned_cols=41  Identities=20%  Similarity=0.441  Sum_probs=36.1

Q ss_pred             hhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccC
Q psy12030        168 THIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCP  209 (245)
Q Consensus       168 ~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  209 (245)
                      +|+++|.+  +|.|++|++.|.....|..|+++|++ ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER-TDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHH-SCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCC-CCCCCCC
Confidence            46777765  49999999999999999999999998 9999996

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=7.3e-10  Score=61.14  Aligned_cols=39  Identities=18%  Similarity=0.292  Sum_probs=34.4

Q ss_pred             hhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCccc
Q psy12030        169 HIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQC  208 (245)
Q Consensus       169 H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  208 (245)
                      |+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG-SGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHS-CCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCC-CCCCCC
Confidence            5667765  49999999999999999999999998 999987

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=6e-10  Score=61.48  Aligned_cols=42  Identities=12%  Similarity=0.161  Sum_probs=37.6

Q ss_pred             ccccccCCCceecccccccccChhHHhcchhcccCCCCCccCC
Q psy12030         60 WPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCP  102 (245)
Q Consensus        60 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  102 (245)
                      |+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTV-KSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSC-CSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCC-CCCCCCC
Confidence            45678889999999999999999999999999987 8888873

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=8.2e-11  Score=73.99  Aligned_cols=64  Identities=20%  Similarity=0.364  Sum_probs=51.4

Q ss_pred             HHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        165 NLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       165 ~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      .|..|++.+.+  ++.|..|++.|. .+.|..|+ .|.+ ++||.|+.|++.|. ...|..|++++.+..
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~-~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCG-ARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHH-HCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcC-CCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            45567665554  488889998884 88899998 8888 99999999999877 588999998887764

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=6.9e-10  Score=62.56  Aligned_cols=44  Identities=20%  Similarity=0.321  Sum_probs=39.8

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG-KKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCC-CCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            477889999999999999999999999999999988 88888863

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.92  E-value=5.4e-10  Score=58.96  Aligned_cols=34  Identities=26%  Similarity=0.470  Sum_probs=30.5

Q ss_pred             HhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCC
Q psy12030        199 ECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRI  233 (245)
Q Consensus       199 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  233 (245)
                      |++ ++||.|++|++.|...+.|..|+++|++++|
T Consensus         2 h~~-~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSG-SSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCC-CCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCC-CCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            455 8999999999999999999999999999875

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=7.3e-10  Score=61.82  Aligned_cols=43  Identities=12%  Similarity=0.200  Sum_probs=39.0

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCP  102 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  102 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR-KSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCC-CCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCC-CCCCCCC
Confidence            467889999999999999999999999999999987 8888874

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=8e-10  Score=62.33  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=39.3

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+.+++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467888999999999999999999999999999866467888863

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.2e-10  Score=62.28  Aligned_cols=44  Identities=23%  Similarity=0.330  Sum_probs=39.3

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCC-SCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            356778899999999999999999999999999987 88888863

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.91  E-value=2.6e-10  Score=66.85  Aligned_cols=49  Identities=20%  Similarity=0.171  Sum_probs=34.8

Q ss_pred             CcCCChHHHHhhhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcc
Q psy12030        158 HRAKHKANLKTHIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQ  207 (245)
Q Consensus       158 ~~f~~~~~l~~H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~  207 (245)
                      +.|.....|..|++.|.+  +|.|.+||+.|...+.|..|+++|++ ++||.
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHF-AKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTT-TSCCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhcc-CCCCC
Confidence            445555556666665554  37788888888888888888888887 77763

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=7.6e-10  Score=61.08  Aligned_cols=41  Identities=20%  Similarity=0.352  Sum_probs=37.2

Q ss_pred             ccccccCCCceecccccccccChhHHhcchhcccCCCCCccC
Q psy12030         60 WPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC  101 (245)
Q Consensus        60 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  101 (245)
                      |.+++.++++|.|++|++.|.....|..|+++|.+ +++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG-SGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSC-CSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCC-CCCCCC
Confidence            56778899999999999999999999999999987 788876

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.2e-09  Score=60.91  Aligned_cols=40  Identities=23%  Similarity=0.318  Sum_probs=33.9

Q ss_pred             hhcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccC
Q psy12030        169 HIAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCP  209 (245)
Q Consensus       169 H~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  209 (245)
                      |+++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAG-ESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTT-SCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCC-CCCCCCC
Confidence            4556664  48999999999999999999999988 9999985

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1e-09  Score=61.23  Aligned_cols=43  Identities=21%  Similarity=0.269  Sum_probs=38.8

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccCC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCP  102 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  102 (245)
                      .|+.+|.++++|.|++|++.|.....|..|+++|.+ +++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR-KSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCC-CCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCC-CCCCCCC
Confidence            467788999999999999999999999999999987 8888873

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.89  E-value=9.5e-10  Score=60.63  Aligned_cols=41  Identities=15%  Similarity=0.203  Sum_probs=37.3

Q ss_pred             ccccccCCCceecccccccccChhHHhcchhcccCCCCCccC
Q psy12030         60 WPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC  101 (245)
Q Consensus        60 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  101 (245)
                      |+.++.++++|.|++||+.|.....|..|+++|.+ +++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~-~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ-SGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTC-CCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCC-CCCCCC
Confidence            56778899999999999999999999999999988 888876

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.3e-09  Score=61.90  Aligned_cols=44  Identities=23%  Similarity=0.316  Sum_probs=39.9

Q ss_pred             ccccccCCCceecc--cccccccChhHHhcchhcccCCCCCccCCCC
Q psy12030         60 WPLVQQYSKGFECQ--VCGKRYKYKRGLHRHKQDECGQEPKYQCPQC  104 (245)
Q Consensus        60 ~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  104 (245)
                      +.++|.++++|.|.  .|++.|.....|..|+++|.+ +++|.|.+|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSG-VKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCC-CCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            56678889999998  899999999999999999988 889999877

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.89  E-value=8.7e-10  Score=58.18  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=30.3

Q ss_pred             HhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCC
Q psy12030        199 ECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRI  233 (245)
Q Consensus       199 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  233 (245)
                      |.+ ++||.|++|++.|...+.|..|+++|++++|
T Consensus         2 H~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSG-KRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSC-CSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCC-CcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            455 8999999999999999999999999998875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.3e-09  Score=61.07  Aligned_cols=43  Identities=28%  Similarity=0.390  Sum_probs=38.3

Q ss_pred             ccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         60 WPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        60 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      +..+|.++++|.|++|++.|.....|..|+++|.+ +++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG-EKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSS-CCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCC-CCCCCCCC
Confidence            45678889999999999999999999999999987 88888863

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.85  E-value=5.8e-11  Score=77.02  Aligned_cols=56  Identities=14%  Similarity=0.237  Sum_probs=43.8

Q ss_pred             hcCCCC--ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        170 IAPQLG--VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       170 ~~~h~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      .++|.+  +|.|++|++.|...+.|..|+++|++ ++||.|..|.    ....|..|.++|.+
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~-ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNE-EFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHH-HHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCC-CCCcccchhh----hHHHHHhhhccccc
Confidence            345654  49999999999999999999999988 8899997665    45556677777766

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=3e-09  Score=58.97  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=31.2

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPH  210 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  210 (245)
                      +|.|++|++.|...+.|..|+++|++ ++||.|++
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   43 (43)
T 2yrm_A           10 AFFCNECDCRFSEEASLKRHTLQTHS-DKSGPSSG   43 (43)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHHHHHTC-TTCSSSCC
T ss_pred             CEECCCCCCeeCChHHHHHHHHhhCC-CCCccCCC
Confidence            59999999999999999999999988 99999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.4e-09  Score=59.70  Aligned_cols=42  Identities=24%  Similarity=0.344  Sum_probs=38.1

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccCCCCCccC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC  101 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  101 (245)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAG-VSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSS-CSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcC-CCCCCC
Confidence            477889999999999999999999999999999987 777766

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2e-09  Score=60.65  Aligned_cols=43  Identities=19%  Similarity=0.290  Sum_probs=38.3

Q ss_pred             ccccccCCCceecccccccccChhHHhcchhcccCCCCCccCCC
Q psy12030         60 WPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQ  103 (245)
Q Consensus        60 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  103 (245)
                      .+++|.++++|.|++|++.|.....|..|+++|.+ +++|.|.+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSS-CCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCC-CCCCCCCC
Confidence            35678889999999999999999999999999988 88898863

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=3.4e-09  Score=58.05  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=35.1

Q ss_pred             ccccCCCceecccccccccChhHHhcchhcccCCCCCccC
Q psy12030         62 LVQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC  101 (245)
Q Consensus        62 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  101 (245)
                      ++|.++++|.|++|++.|.....|..|+++|.+ +++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTG-SGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCC-CSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCC-CCCcCC
Confidence            457788999999999999999999999999988 888876

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.79  E-value=2.9e-09  Score=57.24  Aligned_cols=36  Identities=11%  Similarity=0.266  Sum_probs=31.3

Q ss_pred             HhCCCCCcccC--CCcccCCChHHHHHhHhhhCCCCCCC
Q psy12030        199 ECGQEPKYQCP--HCPHKAKHKANLKTHIAIKHSDRILP  235 (245)
Q Consensus       199 h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~  235 (245)
                      |++ ++||.|+  .|++.|...+.|..|+++|++++||.
T Consensus         1 H~~-~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSD-DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTT-CCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCC-CcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            345 8899999  59999999999999999999999874

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=3.1e-09  Score=57.08  Aligned_cols=32  Identities=19%  Similarity=0.422  Sum_probs=28.3

Q ss_pred             HhCCCCCcccCC--CcccCCChHHHHHhHhhhCCC
Q psy12030        199 ECGQEPKYQCPH--CPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       199 h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      +++ ++||.|++  |++.|..++.|..|+++|+++
T Consensus         4 ~~g-ekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSS-GILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSC-CCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCC-CCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            345 89999986  999999999999999999886

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=2.4e-10  Score=71.83  Aligned_cols=52  Identities=21%  Similarity=0.173  Sum_probs=47.5

Q ss_pred             hHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCCcccc
Q psy12030        190 TGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTR  244 (245)
Q Consensus       190 ~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~  244 (245)
                      ..|..|++++.+ ++||.|+.|++.|. .+.|..|+ .+.+++|+.|+.|++.|.
T Consensus         3 ~~L~~H~~~~c~-~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~   54 (75)
T 2d9k_A            3 SGSSGHEETECP-LRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL   54 (75)
T ss_dssp             CCCSCCCCCCCC-CCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE
T ss_pred             hHHHhhCcccCC-CcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc
Confidence            467789988988 99999999999995 99999999 899999999999999874

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=3.8e-09  Score=56.04  Aligned_cols=34  Identities=18%  Similarity=0.372  Sum_probs=29.2

Q ss_pred             HHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        198 EECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       198 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      .|.+ ++||.|++|++.|...+.|..|+++|++++
T Consensus         3 ~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSS-GLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCC-CCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCC-CCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3555 889999999999999999999999988764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=6.9e-10  Score=71.89  Aligned_cols=43  Identities=23%  Similarity=0.449  Sum_probs=25.4

Q ss_pred             HHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCCc
Q psy12030        198 EECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRV  241 (245)
Q Consensus       198 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~  241 (245)
                      +|++ ++||.|++|++.|...+.|..|+++|++++||.|..|..
T Consensus        19 ~H~~-~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~   61 (88)
T 1x6f_A           19 PRLQ-NSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER   61 (88)
T ss_dssp             SCCC-CSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             ccCC-CCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh
Confidence            3444 556666666666666666666666666666666655543

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=4.3e-09  Score=55.80  Aligned_cols=34  Identities=21%  Similarity=0.540  Sum_probs=29.4

Q ss_pred             HHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        198 EECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       198 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      .|.+ ++||.|++|++.|...+.|..|+++|++++
T Consensus         3 ~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSS-GKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCC-CCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCC-CCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            3555 899999999999999999999999998764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=5.1e-09  Score=55.44  Aligned_cols=34  Identities=26%  Similarity=0.605  Sum_probs=29.1

Q ss_pred             HHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        198 EECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       198 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +|.+ ++||.|++|++.|...+.|..|+++|++++
T Consensus         3 ~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSS-GKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCC-CCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCC-CCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            3555 889999999999999999999999998864

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=7.7e-09  Score=54.72  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=29.2

Q ss_pred             HhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        199 ECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       199 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      |.+ ++||.|++|++.|...+.|..|+++|++++
T Consensus         4 h~~-~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSS-GKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCC-CSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCC-CCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            455 899999999999999999999999998874

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=3.4e-09  Score=56.61  Aligned_cols=34  Identities=18%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             HHhCCCCCcccCCCcccCCCh-HHHHHhHhhhCCCC
Q psy12030        198 EECGQEPKYQCPHCPHKAKHK-ANLKTHIAIKHSDR  232 (245)
Q Consensus       198 ~h~~~~~~~~C~~C~~~f~~~-~~l~~H~~~~~~~~  232 (245)
                      +|.+ ++||.|+.|++.|... +.|..|+++|++++
T Consensus         3 ~h~~-~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSS-GRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCC-CCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCC-CCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            4556 8889999999999998 89999999888764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.71  E-value=3.9e-09  Score=55.86  Aligned_cols=29  Identities=14%  Similarity=0.278  Sum_probs=26.5

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQE  238 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~  238 (245)
                      |+||.|+.||++|..++.|.+|+       ||.|.+
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             ccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            99999999999999999999998       777765

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.70  E-value=8e-10  Score=57.15  Aligned_cols=31  Identities=26%  Similarity=0.514  Sum_probs=27.7

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDRIL  234 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  234 (245)
                      +||.|++||+.|...+.|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5789999999999999999999999998887

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=1.2e-08  Score=53.97  Aligned_cols=33  Identities=21%  Similarity=0.492  Sum_probs=28.3

Q ss_pred             HhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        199 ECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       199 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      |.+ ++||.|++|++.|...+.|..|+++|++++
T Consensus         4 ~~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSS-GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSC-CCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCC-CCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            444 889999999999999999999999998764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=4.2e-09  Score=56.28  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=28.7

Q ss_pred             hHHhCCCCCcccCCCcccCCChHHHHHh-HhhhCCC
Q psy12030        197 REECGQEPKYQCPHCPHKAKHKANLKTH-IAIKHSD  231 (245)
Q Consensus       197 ~~h~~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~~  231 (245)
                      ++|++ ++||.|+.|++.|...+.|..| +++|+++
T Consensus         2 ~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSS-GHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSS-SCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCC-CcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            35666 8999999999999999999999 8888764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.65  E-value=1.8e-08  Score=50.71  Aligned_cols=30  Identities=20%  Similarity=0.445  Sum_probs=25.3

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      ++||.|+.||+.|...+.|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            468889999999999999999988888764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.63  E-value=1.3e-08  Score=57.86  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=27.8

Q ss_pred             HhCCCCCcccCCCcccCCChHHHHHhHh-hhCCCCC
Q psy12030        199 ECGQEPKYQCPHCPHKAKHKANLKTHIA-IKHSDRI  233 (245)
Q Consensus       199 h~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~  233 (245)
                      |++ ++||.|.+||+.|.....|..|++ +|+++..
T Consensus         2 Ht~-~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            2 EDR-DKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTT-TSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCC-CcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            566 899999999999999999999999 8887654

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.62  E-value=2.8e-08  Score=49.94  Aligned_cols=30  Identities=43%  Similarity=0.752  Sum_probs=23.9

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDRI  233 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  233 (245)
                      +||.|++||+.|...+.|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            468888888888888888888888887764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.62  E-value=3.7e-08  Score=49.13  Aligned_cols=29  Identities=17%  Similarity=0.469  Sum_probs=23.5

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +||.|++||+.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47888888888888888888888887764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.61  E-value=3.4e-08  Score=51.17  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=28.5

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCCCCcc
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQEPKYQ  207 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~  207 (245)
                      +|.|++||+.|...+.|..|+++|++ ++||.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHEL-LGEER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTT-TCCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCC-CCCCC
Confidence            58899999999999999999999988 88885

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.59  E-value=3.4e-09  Score=60.04  Aligned_cols=40  Identities=23%  Similarity=0.460  Sum_probs=32.9

Q ss_pred             HHHHHhHHhCCCCCcccC--CCcccCCChHHHHHhHhhhCCCC
Q psy12030        192 LYRHKREECGQEPKYQCP--HCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       192 l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +..|...|++ ++||.|+  .||+.|...+.|..|+++|++++
T Consensus         6 ~~~~~~~H~~-~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            6 SIDKYVKEMP-DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCEEET-TTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHhccCC-CCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3455566777 9999995  69999999999999999998874

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.59  E-value=2.4e-08  Score=49.87  Aligned_cols=29  Identities=28%  Similarity=0.739  Sum_probs=21.8

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +||.|+.||+.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            46778888888888888888877777653

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.58  E-value=5.2e-08  Score=49.93  Aligned_cols=30  Identities=17%  Similarity=0.376  Sum_probs=25.6

Q ss_pred             CCCcccC--CCcccCCChHHHHHhHhhhCCCC
Q psy12030        203 EPKYQCP--HCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       203 ~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      ++||.|+  .||+.|...+.|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4788998  79999999999999999888764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.57  E-value=2.8e-08  Score=52.98  Aligned_cols=33  Identities=15%  Similarity=0.334  Sum_probs=27.6

Q ss_pred             HhCCCCCcccCC--CcccCCChHHHHHhHhhhCCCC
Q psy12030        199 ECGQEPKYQCPH--CPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       199 h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      |++ ++||.|++  ||+.|...+.|..|+++|++++
T Consensus         3 ~~~-~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGK-KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSS-CCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCC-CCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            445 88999984  9999999999999999988864

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.56  E-value=3.8e-08  Score=53.08  Aligned_cols=37  Identities=11%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             ccCCCceecccccccccChhHHhcchhcccCCCCCccC
Q psy12030         64 QQYSKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQC  101 (245)
Q Consensus        64 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  101 (245)
                      |.++++|.|++||+.|.....|..|+++|.+ +++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRR-DRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCC-SCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCC-Ccccee
Confidence            3467899999999999999999999999988 777765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.56  E-value=3.3e-08  Score=48.95  Aligned_cols=28  Identities=21%  Similarity=0.496  Sum_probs=23.1

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      ++||.|+.|++.|...+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4688888888888888888888887764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.55  E-value=3.5e-08  Score=49.14  Aligned_cols=29  Identities=38%  Similarity=0.751  Sum_probs=22.1

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +||.|+.|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            46778888888888888888887777664

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.55  E-value=2.6e-08  Score=53.01  Aligned_cols=35  Identities=20%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             HHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC
Q psy12030        140 HKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG  175 (245)
Q Consensus       140 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  175 (245)
                      |+++|.+ +++|.|+.|++.|.....|..|++.|.+
T Consensus         2 H~~~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTG-IKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCC-SSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCC-CCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            4455555 5556666655555555555555555543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.54  E-value=6.6e-08  Score=49.12  Aligned_cols=29  Identities=14%  Similarity=0.442  Sum_probs=24.4

Q ss_pred             CCcccC--CCcccCCChHHHHHhHhhhCCCC
Q psy12030        204 PKYQCP--HCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       204 ~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +||.|+  .||+.|...+.|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            478887  89999999999999988888764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.53  E-value=4.3e-08  Score=48.10  Aligned_cols=27  Identities=19%  Similarity=0.645  Sum_probs=21.9

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      ++||.|+.||+.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            467888888888888888888888764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.53  E-value=4.5e-08  Score=48.76  Aligned_cols=29  Identities=24%  Similarity=0.571  Sum_probs=20.0

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +||.|++|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            36777777777777777777777776653

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.52  E-value=3.4e-08  Score=48.56  Aligned_cols=27  Identities=22%  Similarity=0.550  Sum_probs=22.7

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      ++||.|+.||+.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468889999999999999999988764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=5.1e-08  Score=51.80  Aligned_cols=33  Identities=18%  Similarity=0.418  Sum_probs=30.3

Q ss_pred             ccccCCCceecccccccccChhHHhcchhcccC
Q psy12030         62 LVQQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        62 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ++|.++++|.|++||+.|.....|..|+++|++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~   34 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHP   34 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCS
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcC
Confidence            457788999999999999999999999999987

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=1.4e-08  Score=50.82  Aligned_cols=29  Identities=17%  Similarity=0.407  Sum_probs=22.9

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +||.|++||+.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            46888888888888888888888887653

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=1.4e-08  Score=51.14  Aligned_cols=30  Identities=23%  Similarity=0.585  Sum_probs=24.4

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      ++||.|+.||+.|...+.|..|+++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            467888888888888888888888887753

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.48  E-value=8.8e-08  Score=46.85  Aligned_cols=27  Identities=22%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      ||.|+.||+.|...+.|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            577888888888888888888777653

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.46  E-value=1.2e-07  Score=57.41  Aligned_cols=30  Identities=17%  Similarity=0.215  Sum_probs=24.4

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      ++||.|.+|++.|...+.|..|+++|+++.
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            788888888888888888888888887753

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.45  E-value=1.2e-07  Score=49.65  Aligned_cols=31  Identities=19%  Similarity=0.395  Sum_probs=28.7

Q ss_pred             ccCCCceecccccccccChhHHhcchhcccC
Q psy12030         64 QQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        64 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      |.++++|.|.+|++.|.....|..|+++|.+
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   32 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCC
Confidence            5678899999999999999999999999976

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.44  E-value=1e-07  Score=49.84  Aligned_cols=31  Identities=26%  Similarity=0.524  Sum_probs=28.6

Q ss_pred             ccCCCceecccccccccChhHHhcchhcccC
Q psy12030         64 QQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        64 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      |.++++|.|++|++.|.....|..|++.|++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHG   32 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcC
Confidence            5678899999999999999999999999977

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.44  E-value=1.2e-07  Score=47.54  Aligned_cols=29  Identities=21%  Similarity=0.385  Sum_probs=23.5

Q ss_pred             CCcccCCCcccCCChHHHHHh-HhhhCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTH-IAIKHSDR  232 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H-~~~~~~~~  232 (245)
                      +||.|+.||+.|...+.|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            478888888888888888888 67777764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.42  E-value=1.9e-07  Score=56.33  Aligned_cols=35  Identities=11%  Similarity=0.171  Sum_probs=29.7

Q ss_pred             CceeCCC--CCCccCChhHHHHHH-hHHhCCCCCcccCC
Q psy12030        175 GVFACNV--CGKGYRYKTGLYRHK-REECGQEPKYQCPH  210 (245)
Q Consensus       175 ~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~~C~~  210 (245)
                      +||+|..  |+++|...++|..|+ ++|++ ++||.|..
T Consensus        26 KPYkC~~~~CgKaFsr~s~L~~H~rriHTg-EKP~~~~~   63 (73)
T 1x3c_A           26 RPYRCVHQGCFAAFTIQQNLILHYQAVHKS-DLPAFSAE   63 (73)
T ss_dssp             CSCBCCSTTCCCBCSSHHHHHHHHHHHSSS-CCCCCCCS
T ss_pred             CCeECCCCCcChhHcCHHHHHHHhhhhCCC-CCCccccc
Confidence            4688865  999999999999997 67888 99999965

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.3e-07  Score=50.62  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=28.9

Q ss_pred             cccCCCceeccc--ccccccChhHHhcchhcccC
Q psy12030         63 VQQYSKGFECQV--CGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        63 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~   94 (245)
                      .+.+++||.|++  |++.|...+.|..|+++|.+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            356789999986  99999999999999999977

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.68  E-value=6.1e-08  Score=47.07  Aligned_cols=26  Identities=23%  Similarity=0.530  Sum_probs=20.2

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      +||.|++||+.|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            46888888888888888888877663

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=3e-07  Score=48.30  Aligned_cols=32  Identities=22%  Similarity=0.409  Sum_probs=29.2

Q ss_pred             cccCCCceecccccccccChhHHhcchhcccC
Q psy12030         63 VQQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        63 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ++.++++|.|++|++.|.....|..|+++|.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            46778999999999999999999999999876

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.31  E-value=2e-07  Score=49.17  Aligned_cols=26  Identities=23%  Similarity=0.448  Sum_probs=20.4

Q ss_pred             ccCCCceecccccccccChhHHhcch
Q psy12030         64 QQYSKGFECQVCGKRYKYKRGLHRHK   89 (245)
Q Consensus        64 ~~~~~~~~C~~C~~~f~~~~~l~~H~   89 (245)
                      +.++++|.|++||+.|...+.|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            45677888888888888888888887

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=2.8e-07  Score=48.91  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=29.1

Q ss_pred             ccccCCCceecccccccccChhHHhcc-hhcccC
Q psy12030         62 LVQQYSKGFECQVCGKRYKYKRGLHRH-KQDECG   94 (245)
Q Consensus        62 ~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~   94 (245)
                      ++|.++++|.|+.||+.|.....|..| ++.|.+
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            457788999999999999999999999 888765

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=4.4e-07  Score=47.72  Aligned_cols=32  Identities=16%  Similarity=0.391  Sum_probs=28.7

Q ss_pred             cccCCCceecccccccccChhHHhcchhcccC
Q psy12030         63 VQQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        63 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      .+.++++|.|.+|++.|.....|..|+++|.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            46678899999999999999999999999866

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=3.4e-07  Score=48.49  Aligned_cols=33  Identities=18%  Similarity=0.349  Sum_probs=29.6

Q ss_pred             ccccCCCceecccccccccCh-hHHhcchhcccC
Q psy12030         62 LVQQYSKGFECQVCGKRYKYK-RGLHRHKQDECG   94 (245)
Q Consensus        62 ~~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~   94 (245)
                      ++|.++++|.|+.|++.|... ..|..|+++|.+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            357788999999999999999 999999999876

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=4.5e-07  Score=47.67  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=29.0

Q ss_pred             cccCCCceecccccccccChhHHhcchhcccC
Q psy12030         63 VQQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        63 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      .+.++++|.|++|++.|.....|..|+++|.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            46778999999999999999999999999876

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.26  E-value=7.6e-07  Score=44.02  Aligned_cols=27  Identities=37%  Similarity=0.724  Sum_probs=24.2

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ++|.|.+|++.|.....|..|+++|++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcC
Confidence            368999999999999999999999987

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=5.2e-07  Score=47.36  Aligned_cols=32  Identities=31%  Similarity=0.519  Sum_probs=29.0

Q ss_pred             cccCCCceecccccccccChhHHhcchhcccC
Q psy12030         63 VQQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        63 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ++.++++|.|++|++.|.....|..|+++|.+
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            46678899999999999999999999999876

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.23  E-value=4.8e-07  Score=51.15  Aligned_cols=35  Identities=34%  Similarity=0.711  Sum_probs=29.0

Q ss_pred             cccCCCceecccccccccChhHHhcchh-cccCCCC
Q psy12030         63 VQQYSKGFECQVCGKRYKYKRGLHRHKQ-DECGQEP   97 (245)
Q Consensus        63 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~   97 (245)
                      +|+++++|.|.+||+.|.....|..|++ +|.++..
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            3678899999999999999999999999 8877433

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.21  E-value=1.6e-07  Score=48.15  Aligned_cols=31  Identities=23%  Similarity=0.424  Sum_probs=27.4

Q ss_pred             CceecccccccccChhHHhcchhcccCCCCCc
Q psy12030         68 KGFECQVCGKRYKYKRGLHRHKQDECGQEPKY   99 (245)
Q Consensus        68 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   99 (245)
                      ++|.|++||+.|...+.|..|+++|.+ +++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~-~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFI-VVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSS-SSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHcc-CCCC
Confidence            479999999999999999999999987 6654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=6.9e-07  Score=46.91  Aligned_cols=32  Identities=28%  Similarity=0.538  Sum_probs=28.7

Q ss_pred             cccCCCceecccccccccChhHHhcchhcccC
Q psy12030         63 VQQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        63 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      .+.++++|.|+.|++.|.....|..|+++|.+
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            35677899999999999999999999999876

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.20  E-value=1.1e-06  Score=43.50  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=22.0

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      +|.|+.||+.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            57888888888888888888888876

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.20  E-value=1.2e-06  Score=43.25  Aligned_cols=26  Identities=31%  Similarity=0.691  Sum_probs=21.8

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      +|.|++|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            47888888888888888888888876

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.20  E-value=1.2e-06  Score=43.61  Aligned_cols=28  Identities=14%  Similarity=0.338  Sum_probs=24.2

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQEP  204 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  204 (245)
                      +|.|..|++.|...+.|..|+++|++ ++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~-~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHS-KE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS-SC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHcc-CC
Confidence            47899999999999999999999987 44

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.20  E-value=7.7e-07  Score=44.04  Aligned_cols=27  Identities=22%  Similarity=0.482  Sum_probs=20.9

Q ss_pred             CCcccC--CCcccCCChHHHHHhHhhhCC
Q psy12030        204 PKYQCP--HCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       204 ~~~~C~--~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      +||.|+  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            467888  888888888888888877764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.19  E-value=6.6e-07  Score=47.63  Aligned_cols=35  Identities=29%  Similarity=0.481  Sum_probs=30.1

Q ss_pred             ccCCCceecc--cccccccChhHHhcchhcccCCCCCc
Q psy12030         64 QQYSKGFECQ--VCGKRYKYKRGLHRHKQDECGQEPKY   99 (245)
Q Consensus        64 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~   99 (245)
                      |.++++|.|.  .|++.|.....|..|+++|.+ +++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEM-TLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHT-TTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCC-CCCC
Confidence            3567899999  599999999999999999987 6654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.16  E-value=1.6e-06  Score=42.76  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      +|.|+.|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            57899999999999999999999887

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.13  E-value=1.1e-06  Score=43.16  Aligned_cols=28  Identities=32%  Similarity=0.787  Sum_probs=24.2

Q ss_pred             CCceecccccccccChhHHhcchhcccC
Q psy12030         67 SKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        67 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      +++|.|+.||+.|.....|..|++.|.+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            3679999999999999999999988753

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.13  E-value=1.3e-06  Score=42.39  Aligned_cols=25  Identities=28%  Similarity=0.705  Sum_probs=17.0

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      |.|.+|++.|...+.|..|+++|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            5666777777777777777766654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.12  E-value=9.6e-07  Score=43.09  Aligned_cols=26  Identities=12%  Similarity=0.405  Sum_probs=23.0

Q ss_pred             CCceecccccccccChhHHhcchhcc
Q psy12030         67 SKGFECQVCGKRYKYKRGLHRHKQDE   92 (245)
Q Consensus        67 ~~~~~C~~C~~~f~~~~~l~~H~~~h   92 (245)
                      +++|.|+.||+.|.....|..|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            36799999999999999999999876

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.11  E-value=1.9e-06  Score=42.81  Aligned_cols=26  Identities=23%  Similarity=0.565  Sum_probs=18.9

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      +|.|..||+.|.....|..|+++|++
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhcc
Confidence            46777777777777777777777765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.10  E-value=1.1e-06  Score=42.75  Aligned_cols=26  Identities=23%  Similarity=0.572  Sum_probs=23.1

Q ss_pred             CCceecccccccccChhHHhcchhcc
Q psy12030         67 SKGFECQVCGKRYKYKRGLHRHKQDE   92 (245)
Q Consensus        67 ~~~~~C~~C~~~f~~~~~l~~H~~~h   92 (245)
                      +++|.|+.||+.|.....|..|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            36799999999999999999999876

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.07  E-value=2.3e-06  Score=43.08  Aligned_cols=26  Identities=42%  Similarity=0.838  Sum_probs=17.6

Q ss_pred             ceeCC--CCCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACN--VCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~--~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ||.|+  .||+.|...+.|..|+++|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            46665  677777777777777776655

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.07  E-value=1.2e-06  Score=49.26  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             CCCccccccCCCceecc--cccccccChhHHhcchhcccC
Q psy12030         57 FNIWPLVQQYSKGFECQ--VCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        57 ~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      +..+...|.++++|.|+  .||+.|...+.|..|+++|.+
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            34455668899999996  799999999999999999876

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.31  E-value=5.7e-07  Score=44.63  Aligned_cols=26  Identities=31%  Similarity=0.699  Sum_probs=19.4

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      +|.|++||+.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            46777777777777777777777765

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.02  E-value=2.5e-06  Score=45.04  Aligned_cols=31  Identities=29%  Similarity=0.486  Sum_probs=28.0

Q ss_pred             ccCCCceeccc--ccccccChhHHhcchhcccC
Q psy12030         64 QQYSKGFECQV--CGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        64 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ++++++|.|.+  ||+.|...+.|..|+++|.+
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            56788999995  99999999999999999876

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.01  E-value=4.8e-06  Score=42.20  Aligned_cols=26  Identities=27%  Similarity=0.632  Sum_probs=19.0

Q ss_pred             ceeCC--CCCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACN--VCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~--~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      +|.|.  .|++.|...+.|..|+++|++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            46777  677777777777777777765

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.98  E-value=3.7e-06  Score=50.79  Aligned_cols=33  Identities=18%  Similarity=0.334  Sum_probs=30.0

Q ss_pred             cccCCCceecccccccccChhHHhcchhcccCC
Q psy12030         63 VQQYSKGFECQVCGKRYKYKRGLHRHKQDECGQ   95 (245)
Q Consensus        63 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   95 (245)
                      .+..+++|.|.+|++.|.....|..|+++|.+.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            466789999999999999999999999999873

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.19  E-value=1.1e-06  Score=42.33  Aligned_cols=25  Identities=32%  Similarity=0.697  Sum_probs=22.2

Q ss_pred             CceecccccccccChhHHhcchhcc
Q psy12030         68 KGFECQVCGKRYKYKRGLHRHKQDE   92 (245)
Q Consensus        68 ~~~~C~~C~~~f~~~~~l~~H~~~h   92 (245)
                      ++|.|+.||+.|.....|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4789999999999999999998876

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.93  E-value=4.1e-06  Score=41.66  Aligned_cols=26  Identities=27%  Similarity=0.774  Sum_probs=15.8

Q ss_pred             ceeCCCCCCccCChhHHHHH-HhHHhC
Q psy12030        176 VFACNVCGKGYRYKTGLYRH-KREECG  201 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H-~~~h~~  201 (245)
                      +|.|..||+.|...+.|..| +++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            35666666666666666666 455544

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.16  E-value=1.3e-06  Score=43.51  Aligned_cols=27  Identities=26%  Similarity=0.572  Sum_probs=24.8

Q ss_pred             CceecccccccccChhHHhcchhcccC
Q psy12030         68 KGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        68 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ++|.|+.||+.|.....|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            579999999999999999999999876

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.84  E-value=2.4e-05  Score=46.91  Aligned_cols=50  Identities=22%  Similarity=0.405  Sum_probs=40.5

Q ss_pred             CCCCCccCChhHHHHHHh-HHhCCC-----CCcccC--CCcccCCChHHHHHhHhhhC
Q psy12030        180 NVCGKGYRYKTGLYRHKR-EECGQE-----PKYQCP--HCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       180 ~~C~~~f~~~~~l~~H~~-~h~~~~-----~~~~C~--~C~~~f~~~~~l~~H~~~~~  229 (245)
                      ..|++.|.+...|..|+. .|.+.+     .+|.|.  .|+..+.....|..|+++.|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            358899999999999984 565522     379996  79999999999999998875

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.75  E-value=1.3e-05  Score=39.35  Aligned_cols=27  Identities=33%  Similarity=0.769  Sum_probs=23.8

Q ss_pred             Cceecc--cccccccChhHHhcchhcccC
Q psy12030         68 KGFECQ--VCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        68 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ++|.|.  .||+.|...+.|..|+++|.+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            468999  999999999999999998853

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.59  E-value=3.7e-05  Score=55.89  Aligned_cols=145  Identities=17%  Similarity=0.279  Sum_probs=87.1

Q ss_pred             CCceecccccccccChhHHhcchhcccCCCCCccCCCCcccccChHHHHHhc-CCccccCcCCCccCchhHHHhH-Hhhh
Q psy12030         67 SKGFECQVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSFFSWSAFHKNL-SGMFACDVCGKEYKYKRGLYRH-KKFE  144 (245)
Q Consensus        67 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~h~-~~~~~C~~C~~~f~~~~~l~~H-~~~h  144 (245)
                      +..+.|++|...|...                +.+ .||-.|=.. -+...+ .+...|+.|...+.....+..- +...
T Consensus        16 ~~~~~C~IC~~~~~~p----------------v~~-~CgH~fC~~-Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~   77 (170)
T 3hcs_A           16 ESKYECPICLMALREA----------------VQT-PCGHRFCKA-CIIKSIRDAGHKCPVDNEILLENQLFPDNFAKRE   77 (170)
T ss_dssp             CGGGBCTTTCSBCSSE----------------EEC-TTSCEEEHH-HHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHH
T ss_pred             CCCCCCCCCChhhcCc----------------EEC-CCCCHHHHH-HHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHH
Confidence            3458899998887643                222 255544221 111111 1123788887776553111000 0111


Q ss_pred             cCCCCCccC--CCCCCcCCChHHHHhhhcCCC-CceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHH
Q psy12030        145 CGQEPKYQC--PHCPHRAKHKANLKTHIAPQL-GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANL  221 (245)
Q Consensus       145 ~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l  221 (245)
                      .. +....|  ..|+..+. ...|..|+..-. .+..|+.|+..+ ....|..|....-. .++..|+.|+..+ ....|
T Consensus        78 i~-~l~v~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~-~r~~~C~~C~~~~-~~~~l  152 (170)
T 3hcs_A           78 IL-SLMVKCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCP-RRQVSCDNCAASM-AFEDK  152 (170)
T ss_dssp             HH-TSEEECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCT-TCEEECTTTCCEE-EGGGH
T ss_pred             Hh-hcccCCCCCCCCceec-HhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCC-CCCeECCCCCCcc-CHHHH
Confidence            11 345667  45777665 456778875422 358899999887 67789999987767 8888999999876 45678


Q ss_pred             HHhHhhhCCCCCC
Q psy12030        222 KTHIAIKHSDRIL  234 (245)
Q Consensus       222 ~~H~~~~~~~~~~  234 (245)
                      ..|...+.|+.++
T Consensus       153 ~~H~~~~~~~~~~  165 (170)
T 3hcs_A          153 EIHDQNCPLALEH  165 (170)
T ss_dssp             HHHHTTCCC----
T ss_pred             HhHHHhCcChhhh
Confidence            9999999888765

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.00068  Score=40.47  Aligned_cols=52  Identities=17%  Similarity=0.158  Sum_probs=29.7

Q ss_pred             CCCccCchhHHHhHHh-hhcCCCCCccCCCCCCcCCChHHHHhhhcCCCCceeCC--CCCCccCChhHHHHHHhHH
Q psy12030        127 CGKEYKYKRGLYRHKK-FECGQEPKYQCPHCPHRAKHKANLKTHIAPQLGVFACN--VCGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       127 C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~--~C~~~f~~~~~l~~H~~~h  199 (245)
                      |++.|.+...|..|+. .|.+ .++-                    ....+|.|.  .|++.+.....|..|++..
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~-~~~~--------------------~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVS-QDFK--------------------HPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCC-CCCC--------------------CSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccC-cccC--------------------CCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            7777777777777763 5555 2200                    000135554  5666666666666666654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.96  E-value=0.00019  Score=48.55  Aligned_cols=31  Identities=29%  Similarity=0.367  Sum_probs=24.3

Q ss_pred             hHHhCCCCCcccCCCcccCCChHHHHHhHhhh
Q psy12030        197 REECGQEPKYQCPHCPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       197 ~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  228 (245)
                      .-|+| ++||.|..|++.|.+.+.|..|+++.
T Consensus        43 ed~tG-ekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPG-GGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGG-GGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCC-CcceEcccCcchhCCHHHHHHHHhhh
Confidence            34566 78888888888888888888888754

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.85  E-value=0.00055  Score=37.16  Aligned_cols=24  Identities=21%  Similarity=0.559  Sum_probs=18.0

Q ss_pred             CCcccCCCcccCCChHHHHHhHhh
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAI  227 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~  227 (245)
                      -+|.|+.|+..|.....|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            457788888888888888888763

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.81  E-value=0.00077  Score=46.30  Aligned_cols=75  Identities=12%  Similarity=0.172  Sum_probs=50.4

Q ss_pred             CCCccCCCCCCcCCChHHHHhhh--cCCCCc---eeCCCC------CCccCChhHHHHHHhHHhCCCCCcccCCCcccCC
Q psy12030        148 EPKYQCPHCPHRAKHKANLKTHI--APQLGV---FACNVC------GKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAK  216 (245)
Q Consensus       148 ~~~~~C~~C~~~f~~~~~l~~H~--~~h~~~---~~C~~C------~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~  216 (245)
                      .+++.|.+|...|.+...+..|.  +.|...   |.+...      +..+....    +...+.+ .+.|.|..|++.|.
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~C~~C~~~f~  104 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGE-DRSKCCPVCNMTFS  104 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCC-CTTTEETTTTEECS
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCC-CCCeEcCCCCCEeC
Confidence            46788999999999999999997  444432   322110      12222111    1122333 67899999999999


Q ss_pred             ChHHHHHhHhh
Q psy12030        217 HKANLKTHIAI  227 (245)
Q Consensus       217 ~~~~l~~H~~~  227 (245)
                      +...|..|+..
T Consensus       105 s~~~~~~H~~g  115 (127)
T 1zu1_A          105 SPVVAESHYIG  115 (127)
T ss_dssp             SHHHHHHHHTS
T ss_pred             CHHHHHHHHCC
Confidence            99999999863

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.93  E-value=0.0021  Score=43.50  Aligned_cols=32  Identities=13%  Similarity=0.181  Sum_probs=27.8

Q ss_pred             cccccCCCceecccccccccChhHHhcchhcc
Q psy12030         61 PLVQQYSKGFECQVCGKRYKYKRGLHRHKQDE   92 (245)
Q Consensus        61 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   92 (245)
                      ...+++.++|.|..|++.|.+...|..|+++.
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            34577889999999999999999999998764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.73  E-value=0.018  Score=39.32  Aligned_cols=76  Identities=13%  Similarity=0.148  Sum_probs=48.8

Q ss_pred             cCCccccCcCCCccCchhHHHhHH--hhhcCCCCCccCCC------CCCcCCChHHHHhhhcCCC--CceeCCCCCCccC
Q psy12030        118 LSGMFACDVCGKEYKYKRGLYRHK--KFECGQEPKYQCPH------CPHRAKHKANLKTHIAPQL--GVFACNVCGKGYR  187 (245)
Q Consensus       118 ~~~~~~C~~C~~~f~~~~~l~~H~--~~h~~~~~~~~C~~------C~~~f~~~~~l~~H~~~h~--~~~~C~~C~~~f~  187 (245)
                      +.+++.|..|+..|.+...+..|.  +.|....+.+.+..      =++.+...    .+...+.  +.|.|.+|+..|.
T Consensus        29 ~~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~C~~C~~~f~  104 (127)
T 1zu1_A           29 IFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEISDGEDRSKCCPVCNMTFS  104 (127)
T ss_dssp             TBCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCCSSCCCTTTEETTTTEECS
T ss_pred             cCCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----ccccccCCCCCeEcCCCCCEeC
Confidence            356789999999999999999998  55532112222210      01222111    1112222  2388999999999


Q ss_pred             ChhHHHHHHh
Q psy12030        188 YKTGLYRHKR  197 (245)
Q Consensus       188 ~~~~l~~H~~  197 (245)
                      +...|..|..
T Consensus       105 s~~~~~~H~~  114 (127)
T 1zu1_A          105 SPVVAESHYI  114 (127)
T ss_dssp             SHHHHHHHHT
T ss_pred             CHHHHHHHHC
Confidence            9999999986

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.96  E-value=0.033  Score=30.26  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=16.9

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      +|.|+.|+..|.....|+.|++.--+
T Consensus        12 ~~~CPrCn~~f~~~~sLr~HmkycCp   37 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMCYCCP   37 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHHHCT
T ss_pred             ceeCCcccccccchHHHHhhhhhcCc
Confidence            36677777777777777777664433

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.88  E-value=0.021  Score=28.99  Aligned_cols=27  Identities=22%  Similarity=0.491  Sum_probs=19.2

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      .|.||+|-+.|.+...|..|....|.+
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            377777777777777777777666643

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.85  E-value=0.013  Score=42.30  Aligned_cols=100  Identities=19%  Similarity=0.340  Sum_probs=58.5

Q ss_pred             cCCCCcccccChH-----HHHHhc-CCcccc--CcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhc
Q psy12030        100 QCPQCKDSFFSWS-----AFHKNL-SGMFAC--DVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIA  171 (245)
Q Consensus       100 ~C~~C~~~f~~~~-----~l~~h~-~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~  171 (245)
                      .|+.|...+....     .+..-+ .-...|  .-|+..+ ....|..|.. .-. -.+..|+.|+..+ .+..|..|..
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~-~~~~l~~H~~-~C~-~~~v~C~~C~~~~-~r~~l~~H~~  130 (170)
T 3hcs_A           55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKM-ELRHLEDHQA-HCE-FALMDCPQCQRPF-QKFHINIHIL  130 (170)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEE-EGGGHHHHHT-TCT-TSEEECTTTCCEE-EGGGHHHHHH
T ss_pred             CCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCcee-cHhHHHHHHh-cCC-ceeeECCCCChHH-HHHHHHHHhh
Confidence            6777766554321     111111 223455  3466544 3456777753 223 4566788888887 4667788863


Q ss_pred             --CCCCceeCCCCCCccCChhHHHHHHhHHhCCCCC
Q psy12030        172 --PQLGVFACNVCGKGYRYKTGLYRHKREECGQEPK  205 (245)
Q Consensus       172 --~h~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  205 (245)
                        -..+...|+.|+..+. ...|..|..++.| +.+
T Consensus       131 ~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~-~~~  164 (170)
T 3hcs_A          131 KDCPRRQVSCDNCAASMA-FEDKEIHDQNCPL-ALE  164 (170)
T ss_dssp             HTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC----
T ss_pred             hhCCCCCeECCCCCCccC-HHHHHhHHHhCcC-hhh
Confidence              2333478889988764 5678899888877 443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.55  E-value=0.13  Score=26.05  Aligned_cols=25  Identities=24%  Similarity=0.478  Sum_probs=21.5

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      |.|++|.+.|.+...|..|....|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccc
Confidence            8899999999999999999887765

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=92.17  E-value=0.098  Score=33.92  Aligned_cols=11  Identities=27%  Similarity=0.513  Sum_probs=6.8

Q ss_pred             CcccCCCcccC
Q psy12030        205 KYQCPHCPHKA  215 (245)
Q Consensus       205 ~~~C~~C~~~f  215 (245)
                      ||+|..||+.|
T Consensus        67 p~~C~~CG~~F   77 (105)
T 2gmg_A           67 PAQCRKCGFVF   77 (105)
T ss_dssp             CCBBTTTCCBC
T ss_pred             CcChhhCcCee
Confidence            56666666666

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=90.93  E-value=0.78  Score=25.59  Aligned_cols=47  Identities=26%  Similarity=0.542  Sum_probs=34.9

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCC-cccCCChHHHHHhHhh
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHC-PHKAKHKANLKTHIAI  227 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C-~~~f~~~~~l~~H~~~  227 (245)
                      -.|++|....-....|..|...-..    =+||+| ...-.+.+.|+.|.++
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sCp~----gqCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSCIN----GQCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHHTT----TBCTTTCCBCCSSHHHHHHHHTT
T ss_pred             chhhHHHhhhhhHHHHHHHhccCCC----CCCCcccCcCCcCHHHHHHHHHH
Confidence            3578888888888888888887643    367877 3455688888888763

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=90.05  E-value=0.48  Score=24.04  Aligned_cols=26  Identities=15%  Similarity=0.145  Sum_probs=19.3

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhh
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~  228 (245)
                      ...+.|..|+-+|.+...+..|++..
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             cCcCeeccccceehhhHHHhhhheec
Confidence            45677888888888888888887643

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=89.99  E-value=0.16  Score=30.96  Aligned_cols=15  Identities=20%  Similarity=0.394  Sum_probs=8.3

Q ss_pred             CccCCCCcccccChH
Q psy12030         98 KYQCPQCKDSFFSWS  112 (245)
Q Consensus        98 ~~~C~~C~~~f~~~~  112 (245)
                      ..+||+||....+..
T Consensus         8 ~~~~PlCG~~L~W~e   22 (95)
T 2k5c_A            8 MAKCPICGSPLKWEE   22 (95)
T ss_dssp             CEECSSSCCEECHHH
T ss_pred             cccCCcCCCccCHHH
Confidence            346666666654433

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=89.52  E-value=0.14  Score=31.23  Aligned_cols=17  Identities=24%  Similarity=0.558  Sum_probs=10.1

Q ss_pred             ccCCCCCCcCCChHHHH
Q psy12030        151 YQCPHCPHRAKHKANLK  167 (245)
Q Consensus       151 ~~C~~C~~~f~~~~~l~  167 (245)
                      -+|++||....+...+.
T Consensus         9 ~~~PlCG~~L~W~eLIe   25 (95)
T 2k5c_A            9 AKCPICGSPLKWEELIE   25 (95)
T ss_dssp             EECSSSCCEECHHHHHH
T ss_pred             ccCCcCCCccCHHHHHH
Confidence            45777777666554433

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=89.12  E-value=0.17  Score=30.94  Aligned_cols=45  Identities=24%  Similarity=0.501  Sum_probs=23.0

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHh
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTH  224 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H  224 (245)
                      |.|+.||.++. +..|..|...-.+ -..|.|-.|++.|.. ..++.|
T Consensus        11 F~C~~Cgd~lK-K~kv~~H~~~Cr~-~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           11 FTCNACGESVK-KIQVEKHVSNCRN-CECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEESSSCCEEE-TTHHHHHHHHCTT-CCEEEETTTTEEEEG-GGTTTC
T ss_pred             EEcCCCCCeee-cccchhHHhhCCC-CCcEEecccCCeeCC-CCEeCE
Confidence            55666664433 4455666544322 334666666666653 334444

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=88.48  E-value=0.41  Score=25.85  Aligned_cols=30  Identities=30%  Similarity=0.657  Sum_probs=17.5

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKA  215 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f  215 (245)
                      |.|-.||+.|.... |.        .-+..+|++||+..
T Consensus         4 Y~C~rCg~~fs~~e-l~--------~lP~IrCpyCGyri   33 (48)
T 4ayb_P            4 YRCGKCWKTFTDEQ-LK--------VLPGVRCPYCGYKI   33 (48)
T ss_dssp             -CCCCTTTTCCCCC-SC--------CCSSSCCTTTCCSC
T ss_pred             EEeeccCCCccHHH-Hh--------hCCCcccCccCcEE
Confidence            77777887777542 10        02346788887653

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=86.75  E-value=0.56  Score=22.94  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=16.5

Q ss_pred             ccCCCcccCCChHHHHHhHhhhCC
Q psy12030        207 QCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       207 ~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      -|..|.+.++...+|.+|++-.|.
T Consensus        11 hcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            467777777777777777765553

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=85.94  E-value=0.16  Score=31.03  Aligned_cols=41  Identities=12%  Similarity=0.115  Sum_probs=33.9

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCCcccc
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGRVWTR  244 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~f~  244 (245)
                      -..|.|..||.+ ..+..|..|...-.+...|.|..|++.|.
T Consensus         8 MV~F~C~~Cgd~-lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A            8 MVFFTCNACGES-VKKIQVEKHVSNCRNCECLSCIDCGKDFW   48 (79)
T ss_dssp             CCEEEESSSCCE-EETTHHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred             eeEEEcCCCCCe-eecccchhHHhhCCCCCcEEecccCCeeC
Confidence            346899999966 46778999988777777899999999984

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=85.68  E-value=0.26  Score=30.78  Aligned_cols=22  Identities=27%  Similarity=0.652  Sum_probs=13.2

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ..|-+||+.|.   .|.+|+..+||
T Consensus        22 iiClecGK~fK---~LkRHL~~~hg   43 (87)
T 2jsp_A           22 IVCLECGGSFK---SLKRHLTTHHS   43 (87)
T ss_dssp             EECTBTCCEES---BHHHHHHHTTC
T ss_pred             eEecccchhhH---HHHHHHHHccC
Confidence            55666666666   35566666555

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=85.38  E-value=0.66  Score=27.07  Aligned_cols=11  Identities=27%  Similarity=0.827  Sum_probs=6.3

Q ss_pred             eeCCCCCCccC
Q psy12030        177 FACNVCGKGYR  187 (245)
Q Consensus       177 ~~C~~C~~~f~  187 (245)
                      |.|..||..+.
T Consensus        22 Y~C~~Cg~~~~   32 (63)
T 3h0g_L           22 YLCADCGARNT   32 (63)
T ss_dssp             CBCSSSCCBCC
T ss_pred             EECCCCCCeee
Confidence            55666655554

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=84.85  E-value=0.49  Score=28.34  Aligned_cols=12  Identities=17%  Similarity=0.675  Sum_probs=7.6

Q ss_pred             eeCCCCCCccCC
Q psy12030        177 FACNVCGKGYRY  188 (245)
Q Consensus       177 ~~C~~C~~~f~~  188 (245)
                      |.|..||..|..
T Consensus        29 Y~C~~CG~~~e~   40 (70)
T 1twf_L           29 YICAECSSKLSL   40 (70)
T ss_dssp             EECSSSCCEECC
T ss_pred             EECCCCCCccee
Confidence            666666666553

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=83.92  E-value=1.5  Score=26.48  Aligned_cols=40  Identities=25%  Similarity=0.615  Sum_probs=21.4

Q ss_pred             CCceec-ccccccccChhHHhcchhcccCCCCCccCCCCcccc
Q psy12030         67 SKGFEC-QVCGKRYKYKRGLHRHKQDECGQEPKYQCPQCKDSF  108 (245)
Q Consensus        67 ~~~~~C-~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f  108 (245)
                      -.+..| ..|+..+. +..|..|+...-. .++..|..|+..+
T Consensus        14 ~~~v~C~~~C~~~v~-r~~l~~H~~~~C~-~r~v~C~~C~~~~   54 (76)
T 2yuc_A           14 FNVIPCPNRCPMKLS-RRDLPAHLQHDCP-KRRLKCEFCGCDF   54 (76)
T ss_dssp             CSCCBCTTCCSCBCC-SSSSTTTTTTSCT-TSCCCCSSSCCCC
T ss_pred             CcccCCCccccHHhh-HhHHHhhCHhhCC-CcceECCCCCCcc
Confidence            345567 46776654 3566666653333 3445555555544

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=82.80  E-value=0.54  Score=34.73  Aligned_cols=23  Identities=35%  Similarity=0.791  Sum_probs=14.8

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcc
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPH  213 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~  213 (245)
                      |.|.+||..+.             | +.|..||.||.
T Consensus       172 ~~C~~CG~i~~-------------g-~~p~~CP~C~~  194 (202)
T 1yuz_A          172 HLCPICGYIHK-------------G-EDFEKCPICFR  194 (202)
T ss_dssp             EECSSSCCEEE-------------S-SCCSBCTTTCC
T ss_pred             EEECCCCCEEc-------------C-cCCCCCCCCCC
Confidence            77777776654             2 45677777764

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=82.80  E-value=0.34  Score=26.36  Aligned_cols=12  Identities=50%  Similarity=1.207  Sum_probs=7.9

Q ss_pred             eeCCCCCCccCC
Q psy12030        177 FACNVCGKGYRY  188 (245)
Q Consensus       177 ~~C~~C~~~f~~  188 (245)
                      |.|.+||..+..
T Consensus         5 y~C~vCGyvyd~   16 (46)
T 6rxn_A            5 YVCNVCGYEYDP   16 (46)
T ss_dssp             EEETTTCCEECG
T ss_pred             EECCCCCeEEeC
Confidence            677777766653

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.46  E-value=0.62  Score=28.41  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=19.5

Q ss_pred             CcccCCCcccCC-------ChHHHHHhHhhhCC
Q psy12030        205 KYQCPHCPHKAK-------HKANLKTHIAIKHS  230 (245)
Q Consensus       205 ~~~C~~C~~~f~-------~~~~l~~H~~~~~~  230 (245)
                      .-.|.+|++.+.       .-+.|.+|++..|.
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~   60 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHR   60 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTH
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHCH
Confidence            456888888776       35788899888874

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=81.77  E-value=1.4  Score=26.48  Aligned_cols=32  Identities=22%  Similarity=0.685  Sum_probs=20.5

Q ss_pred             CCccCCCCCCcCCChHHHHhhhcCCCCceeCCCCCCccCC
Q psy12030        149 PKYQCPHCPHRAKHKANLKTHIAPQLGVFACNVCGKGYRY  188 (245)
Q Consensus       149 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~  188 (245)
                      ..|.|+.|++.-..        +.-.+.|.|..|++.|.-
T Consensus        25 ~ky~C~fCgk~~vk--------R~a~GIW~C~~C~~~~AG   56 (72)
T 3jyw_9           25 ARYDCSFCGKKTVK--------RGAAGIWTCSCCKKTVAG   56 (72)
T ss_dssp             SCBCCSSCCSSCBS--------BCSSSCBCCSSSCCCCCC
T ss_pred             cCccCCCCCCceeE--------ecCCCeEECCCCCCEEeC
Confidence            34778888766322        244566888888877654

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=81.22  E-value=0.78  Score=30.70  Aligned_cols=25  Identities=24%  Similarity=0.736  Sum_probs=14.7

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCc-ccCCCccc
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKY-QCPHCPHK  214 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-~C~~C~~~  214 (245)
                      |.|..||..|.-            . +.++ .||.||..
T Consensus        74 ~~C~~CG~~~e~------------~-~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           74 LECKDCSHVFKP------------N-ALDYGVCEKCHSK   99 (119)
T ss_dssp             EECSSSSCEECS------------C-CSTTCCCSSSSSC
T ss_pred             EEcCCCCCEEeC------------C-CCCCCcCccccCC
Confidence            666666666653            1 4456 66666643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.69
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.58
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.41
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.34
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.33
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.3
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.26
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.25
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.25
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.22
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.21
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.13
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.12
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.1
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.08
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.05
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.04
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.03
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.02
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.97
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.97
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.96
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.96
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.94
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.91
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.89
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.89
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.87
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.8
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.77
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.66
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.65
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.65
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.6
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.6
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.57
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.52
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.45
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.38
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.36
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.35
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.27
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.26
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.15
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.15
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.12
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.11
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.07
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.06
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.0
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.99
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.94
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.86
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.76
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.74
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.74
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.7
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.69
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.63
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.61
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.59
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.47
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.43
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.34
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.29
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.23
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.23
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.16
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.16
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.16
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.14
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.12
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.08
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.02
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.96
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.78
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.77
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.66
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.65
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.51
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.39
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.32
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.2
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.17
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.15
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.07
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.04
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.83
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.82
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.57
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.55
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.36
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.75
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.61
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.59
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	94.25
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.2
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.18
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.05
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.02
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.9
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	93.17
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.97
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	92.62
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	92.5
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.37
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.16
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.03
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	91.79
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.31
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	90.28
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.2
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.06
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.71
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	89.53
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	89.51
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	84.74
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	81.96
d1fu9a_	36	U-shaped transcription factor, different fingers {	81.08
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	80.88

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-17  Score=96.61  Aligned_cols=52  Identities=33%  Similarity=0.611  Sum_probs=49.4

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhh
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  228 (245)
                      ++|+|+ ||++|.....|..|+++|++ ++||.|++||++|...+.|..|+++|
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~Ht~-ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSMHLG-LRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHHHSC-CCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhcccc-ccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            469995 99999999999999999999 99999999999999999999999886

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.2e-16  Score=88.85  Aligned_cols=52  Identities=29%  Similarity=0.576  Sum_probs=45.8

Q ss_pred             CccccCcCCCccCchhHHHhHHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCC
Q psy12030        120 GMFACDVCGKEYKYKRGLYRHKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQ  173 (245)
Q Consensus       120 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h  173 (245)
                      ++|+| .||+.|.....|..|+++|+| ++||.|++|++.|...+.|..|+++|
T Consensus         2 K~y~C-~Cgk~F~~~~~l~~H~~~Ht~-ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPC-QCGKSFTHKSQRDRHMSMHLG-LRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSC-CCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCC-CCCCeECCHHHhHHHhhcccc-ccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            57888 499999999999999999988 88999999999999999998888876

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.6e-14  Score=75.13  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             CCCcccCCCcccCCChHHHHHhHh-hhCCCCCCCCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIA-IKHSDRILPPQE  238 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~C~~  238 (245)
                      +|||.|.+||+.|..++.|..|++ +|+|++||.|.+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            789999999999999999999986 799999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.3e-14  Score=75.55  Aligned_cols=37  Identities=19%  Similarity=0.496  Sum_probs=34.7

Q ss_pred             HHHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        194 RHKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       194 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      +|+++|++ ++||.|++||++|...++|..|+++|+||
T Consensus         2 rH~~~Ht~-ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRE-RRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCC-SCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCC-CCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            57889988 99999999999999999999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.3e-13  Score=68.66  Aligned_cols=33  Identities=21%  Similarity=0.434  Sum_probs=30.6

Q ss_pred             HHhCCCCCcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        198 EECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       198 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      +|++ ++||.|++||++|...+.|..|+++|+|+
T Consensus         1 IHTg-ekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSG-EKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTT-CCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCC-CCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            4777 99999999999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.5e-13  Score=70.46  Aligned_cols=35  Identities=31%  Similarity=0.612  Sum_probs=32.3

Q ss_pred             hHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        197 REECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       197 ~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      ++|+| |+||.|++||++|..++.|..|+++|++++
T Consensus         1 R~HTg-ekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTG-EKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCC-CCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCC-CCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            57888 999999999999999999999999999875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=4.5e-13  Score=69.96  Aligned_cols=35  Identities=23%  Similarity=0.427  Sum_probs=32.6

Q ss_pred             HHhHHhCCCCCcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        195 HKREECGQEPKYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       195 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      |.++|+| |+||.|++|+++|..++.|..|+++|.+
T Consensus         2 h~R~HTg-eKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTG-IKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCC-SSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCC-ccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            6789999 9999999999999999999999999864

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.7e-13  Score=68.03  Aligned_cols=35  Identities=31%  Similarity=0.650  Sum_probs=31.5

Q ss_pred             hHHhCCCCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        197 REECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       197 ~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      ++|+| |+||.|++||+.|+.+++|.+|++.+|++.
T Consensus         1 R~HTg-ekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           1 RTHSG-EKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSC-CCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CccCC-CCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            46888 999999999999999999999998888764

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1.2e-12  Score=63.19  Aligned_cols=28  Identities=25%  Similarity=0.509  Sum_probs=25.0

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      ||||+|++|+++|..++.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6889999999999999999999999876

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.25  E-value=2.3e-12  Score=63.02  Aligned_cols=29  Identities=17%  Similarity=0.469  Sum_probs=25.7

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +||.|++||+.|..++.|.+|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            58999999999999999999999999875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.9e-12  Score=67.16  Aligned_cols=36  Identities=25%  Similarity=0.505  Sum_probs=31.8

Q ss_pred             CCceeCCCCCCccCChhHHHHHHh-HHhCCCCCcccCC
Q psy12030        174 LGVFACNVCGKGYRYKTGLYRHKR-EECGQEPKYQCPH  210 (245)
Q Consensus       174 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~  210 (245)
                      .+||+|++||++|...++|..|++ +|++ |+||.|++
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~-ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTS-ERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCC-CCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCC-CcCcCCcC
Confidence            357999999999999999999986 6877 99999974

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.8e-12  Score=62.10  Aligned_cols=29  Identities=28%  Similarity=0.763  Sum_probs=25.3

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      |||.|++||++|..++.|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            58889999999999999999999988875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=3.1e-12  Score=65.29  Aligned_cols=32  Identities=22%  Similarity=0.462  Sum_probs=29.0

Q ss_pred             HhCCCCCcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        199 ECGQEPKYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       199 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      |+| |+||+|++|++.|..++.|.+|+++|++.
T Consensus         2 ~TG-ekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSG-KRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSC-CSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCC-CccccCCCCCCcccChHHHHHHccccCCc
Confidence            456 99999999999999999999999999875

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-11  Score=64.78  Aligned_cols=36  Identities=22%  Similarity=0.544  Sum_probs=34.5

Q ss_pred             CccccccCCCceecccccccccChhHHhcchhcccC
Q psy12030         59 IWPLVQQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        59 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      .|+.+|++++||.|++||+.|...+.|..|+++|+|
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            688999999999999999999999999999999987

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.5e-11  Score=63.29  Aligned_cols=32  Identities=25%  Similarity=0.559  Sum_probs=21.2

Q ss_pred             cccCC--CcccCCChHHHHHhHhhhCCCCCCCCC
Q psy12030        206 YQCPH--CPHKAKHKANLKTHIAIKHSDRILPPQ  237 (245)
Q Consensus       206 ~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~  237 (245)
                      |.|++  ||++|..++.|.+|+++|+|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            55655  666666666666666666666666664

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=2.3e-12  Score=70.77  Aligned_cols=42  Identities=21%  Similarity=0.519  Sum_probs=36.0

Q ss_pred             hhHHHHHHhHHhCCCCCcccCC--CcccCCChHHHHHhHhhhCCCC
Q psy12030        189 KTGLYRHKREECGQEPKYQCPH--CPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       189 ~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +..|..|+. |++ ++||.|++  |++.|..++.|..|+++|+|++
T Consensus         4 ~~~l~~h~~-h~g-ekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           4 RGSIDKYVK-EMP-DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CSSGGGSCE-EET-TTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cchhcchhh-ccC-CCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            345667775 778 99999987  9999999999999999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.9e-11  Score=57.40  Aligned_cols=26  Identities=23%  Similarity=0.505  Sum_probs=18.9

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      |||+|++||++|..++.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            57777777777777777777777763

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.1e-11  Score=60.18  Aligned_cols=32  Identities=25%  Similarity=0.525  Sum_probs=30.5

Q ss_pred             cccCCCceecccccccccChhHHhcchhcccC
Q psy12030         63 VQQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        63 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      +|++++||.|.+||+.|...+.|..|+++|.+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            58899999999999999999999999999987

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=8.5e-11  Score=60.37  Aligned_cols=33  Identities=30%  Similarity=0.753  Sum_probs=30.6

Q ss_pred             eeCCC--CCCccCChhHHHHHHhHHhCCCCCcccCC
Q psy12030        177 FACNV--CGKGYRYKTGLYRHKREECGQEPKYQCPH  210 (245)
Q Consensus       177 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  210 (245)
                      |.|+.  ||++|...+.|.+|+++|+| ++||.|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htg-ekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSD-TRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHT-SCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCC-CCCEeCCC
Confidence            67876  99999999999999999999 99999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=4.3e-11  Score=62.28  Aligned_cols=35  Identities=20%  Similarity=0.400  Sum_probs=27.8

Q ss_pred             HHhhhcCCCCCccCCCCCCcCCChHHHHhhhcCCCC
Q psy12030        140 HKKFECGQEPKYQCPHCPHRAKHKANLKTHIAPQLG  175 (245)
Q Consensus       140 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  175 (245)
                      |.|+|+| ++||.|+.|+++|.....|.+|+++|..
T Consensus         2 h~R~HTg-eKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTG-IKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCC-SSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCC-ccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            5677888 8888888888888888888888877753

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.1e-10  Score=57.14  Aligned_cols=28  Identities=25%  Similarity=0.484  Sum_probs=24.5

Q ss_pred             CCcccCC--CcccCCChHHHHHhHhhhCCC
Q psy12030        204 PKYQCPH--CPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       204 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      |||.|++  ||++|..++.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5889988  999999999999999999886

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.97  E-value=1.6e-10  Score=56.31  Aligned_cols=28  Identities=32%  Similarity=0.678  Sum_probs=21.0

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQEP  204 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  204 (245)
                      ||.|++||++|...++|..|+++|+| |+
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTg-EK   29 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTN-EK   29 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTS-SC
T ss_pred             cCCCCCCCCCCCCchHcccccCcccC-CC
Confidence            57777777777777777777777777 53

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.4e-10  Score=56.55  Aligned_cols=29  Identities=14%  Similarity=0.442  Sum_probs=25.1

Q ss_pred             CCcccC--CCcccCCChHHHHHhHhhhCCCC
Q psy12030        204 PKYQCP--HCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       204 ~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +||.|+  .||++|+.++.|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            589995  49999999999999999999875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.3e-10  Score=57.05  Aligned_cols=28  Identities=32%  Similarity=0.670  Sum_probs=22.0

Q ss_pred             CCcccCC--CcccCCChHHHHHhHhhhCCC
Q psy12030        204 PKYQCPH--CPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       204 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      |||.|++  ||++|+.++.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5788876  888888888888888888775

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.4e-10  Score=59.88  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=31.0

Q ss_pred             ccccCCCceecccccccccChhHHhcchhcccC
Q psy12030         62 LVQQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        62 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ++|++++||.|.+||+.|...+.|..|+++|++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            478999999999999999999999999999976

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.8e-10  Score=55.34  Aligned_cols=28  Identities=25%  Similarity=0.466  Sum_probs=23.1

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQEP  204 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  204 (245)
                      ||.|++||++|..+++|..|+++|+| |+
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htg-eK   29 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQN-KK   29 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGC-CC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCC-cC
Confidence            57888888888888888888888887 54

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.7e-10  Score=58.64  Aligned_cols=33  Identities=18%  Similarity=0.387  Sum_probs=30.1

Q ss_pred             ccccCCCceecccccccccChhHHhcchhcccC
Q psy12030         62 LVQQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        62 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ++|++++||.|++||+.|.....|..|++.+++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            468999999999999999999999999987766

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5.1e-10  Score=52.41  Aligned_cols=26  Identities=31%  Similarity=0.709  Sum_probs=22.9

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHh
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREEC  200 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~  200 (245)
                      +||+|.+||++|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            36899999999999999999999885

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=5.8e-10  Score=53.60  Aligned_cols=27  Identities=26%  Similarity=0.600  Sum_probs=21.1

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      +||+|.+|+++|...++|..|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            467888888888888888888888765

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=4.6e-10  Score=57.07  Aligned_cols=31  Identities=19%  Similarity=0.395  Sum_probs=29.1

Q ss_pred             ccCCCceecccccccccChhHHhcchhcccC
Q psy12030         64 QQYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        64 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      +++++||.|++|++.|.....|..|+++|..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            6789999999999999999999999999965

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=2.2e-09  Score=53.23  Aligned_cols=29  Identities=21%  Similarity=0.480  Sum_probs=25.1

Q ss_pred             CCCcccCC--CcccCCChHHHHHhHhhhCCC
Q psy12030        203 EPKYQCPH--CPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       203 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      |+||.|++  ||++|+..+.|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68899987  999999999999999988764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.1e-09  Score=52.98  Aligned_cols=27  Identities=33%  Similarity=0.721  Sum_probs=20.8

Q ss_pred             CCcccCC--CcccCCChHHHHHhHhhhCC
Q psy12030        204 PKYQCPH--CPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       204 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~  230 (245)
                      |||.|++  ||++|+.++.|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5778866  88888888888888887765

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.6e-09  Score=50.55  Aligned_cols=26  Identities=38%  Similarity=0.742  Sum_probs=20.8

Q ss_pred             CCcccCC--CcccCCChHHHHHhHhhhC
Q psy12030        204 PKYQCPH--CPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       204 ~~~~C~~--C~~~f~~~~~l~~H~~~~~  229 (245)
                      +||.|++  ||++|+..+.|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5788877  8888888888888888774

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=8.1e-09  Score=50.32  Aligned_cols=26  Identities=31%  Similarity=0.576  Sum_probs=19.3

Q ss_pred             ceeCCC--CCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACNV--CGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~~--C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ||.|+.  ||++|...++|..|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            567766  77777777777777777776

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1e-08  Score=50.09  Aligned_cols=27  Identities=33%  Similarity=0.675  Sum_probs=23.2

Q ss_pred             CceeCCC--CCCccCChhHHHHHHhHHhC
Q psy12030        175 GVFACNV--CGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       175 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~  201 (245)
                      +||.|++  ||++|...++|..|+++|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCC
Confidence            3688876  99999999999999999987

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.6e-08  Score=44.79  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=22.0

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      |.+|+.|++.|+.+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            57888888888888888888888875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=5.5e-09  Score=57.01  Aligned_cols=39  Identities=23%  Similarity=0.433  Sum_probs=33.8

Q ss_pred             CCCCCccccccCCCceeccc--ccccccChhHHhcchhcccC
Q psy12030         55 HGFNIWPLVQQYSKGFECQV--CGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        55 ~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ..+..|. .+.++++|.|.+  |++.|...+.|..|+++|.+
T Consensus         5 ~~l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htg   45 (47)
T d1ncsa_           5 GSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             SSGGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             chhcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccC
Confidence            3445555 499999999987  99999999999999999988

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.7e-08  Score=45.91  Aligned_cols=29  Identities=24%  Similarity=0.657  Sum_probs=25.6

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      |+||+|..|.+.-.+++.|..|++.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            57899999999999999999999998885

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.6e-08  Score=48.98  Aligned_cols=26  Identities=42%  Similarity=0.838  Sum_probs=18.6

Q ss_pred             ceeCC--CCCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACN--VCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~--~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ||.|+  .||++|...++|..|+++|+|
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            46664  477777777777777777766

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=4e-08  Score=45.00  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=24.4

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      |+||.|.+||+.|+.+....+|.++|-
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999998874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=5.4e-08  Score=46.88  Aligned_cols=26  Identities=35%  Similarity=0.719  Sum_probs=21.3

Q ss_pred             ceeCCC--CCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACNV--CGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~~--C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ||.|++  |+++|...++|.+|+++|+|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccCC
Confidence            578866  88888888888888888875

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.1e-07  Score=45.20  Aligned_cols=32  Identities=13%  Similarity=0.256  Sum_probs=25.1

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCCCCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSDRILP  235 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  235 (245)
                      +...|..||+.|.+...|.+|.-.|.+++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            45678888888888888888888888888873

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.2e-07  Score=44.06  Aligned_cols=27  Identities=22%  Similarity=0.597  Sum_probs=22.9

Q ss_pred             CCcccCC--CcccCCChHHHHHhHhhhCC
Q psy12030        204 PKYQCPH--CPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       204 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~  230 (245)
                      +||.|.+  |++++.+.++|++|++.+||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5888877  88889999999999888876

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=1.5e-07  Score=46.46  Aligned_cols=24  Identities=29%  Similarity=0.739  Sum_probs=11.4

Q ss_pred             eeCCC--CCCccCChhHHHHHHhHHh
Q psy12030        177 FACNV--CGKGYRYKTGLYRHKREEC  200 (245)
Q Consensus       177 ~~C~~--C~~~f~~~~~l~~H~~~h~  200 (245)
                      |.|++  ||+.|...++|.+|+++|+
T Consensus         4 ~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           4 YSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             BCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             eECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            44443  4444444444555544443

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.1e-07  Score=43.18  Aligned_cols=29  Identities=28%  Similarity=0.604  Sum_probs=25.3

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      |+||.|++|+..|..+.-+.-|.+.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            68899999999999999999999988764

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.9e-07  Score=41.24  Aligned_cols=27  Identities=37%  Similarity=0.629  Sum_probs=19.5

Q ss_pred             cccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      |.|++||....-.+-|++|+++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            667777777777777777777777653

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.8e-07  Score=44.43  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=18.5

Q ss_pred             ceeCCC--CCCccCChhHHHHHHhHHh
Q psy12030        176 VFACNV--CGKGYRYKTGLYRHKREEC  200 (245)
Q Consensus       176 ~~~C~~--C~~~f~~~~~l~~H~~~h~  200 (245)
                      ||.|+.  ||++|...++|.+|+++|+
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            566766  7777777777888777773

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9e-07  Score=40.54  Aligned_cols=28  Identities=46%  Similarity=0.826  Sum_probs=25.8

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      +||.|.+|....+++++|..|+++.|+.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            6899999999999999999999998875

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7.3e-07  Score=40.06  Aligned_cols=26  Identities=27%  Similarity=0.627  Sum_probs=22.5

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      +||+|..|++.-..+++|.+|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68889999998889999999988875

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.1e-06  Score=38.73  Aligned_cols=21  Identities=43%  Similarity=0.773  Sum_probs=8.5

Q ss_pred             CCCCCCccCChhHHHHHHhHH
Q psy12030        179 CNVCGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       179 C~~C~~~f~~~~~l~~H~~~h  199 (245)
                      |++|++.|..+..|..|++.|
T Consensus         4 c~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           4 CEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             BTTTTBCCCCHHHHHHHGGGC
T ss_pred             cchhhhHhcchhHHHHHhhcc
Confidence            334444444444444444433

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=7.6e-07  Score=40.70  Aligned_cols=25  Identities=16%  Similarity=0.381  Sum_probs=12.0

Q ss_pred             CCccCCCCCCcCCChHHHHhhhcCC
Q psy12030        149 PKYQCPHCPHRAKHKANLKTHIAPQ  173 (245)
Q Consensus       149 ~~~~C~~C~~~f~~~~~l~~H~~~h  173 (245)
                      +||.|++||+.|......++|.++|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            4444444444444444444444444

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=6.3e-07  Score=42.56  Aligned_cols=30  Identities=43%  Similarity=0.764  Sum_probs=26.5

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhCCCCCcc
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECGQEPKYQ  207 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~  207 (245)
                      ..|+.||++|...-.|.+|...|.+ |+||.
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~-ekpys   35 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSG-EKPYS   35 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCS-CCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCC-CCCCC
Confidence            5789999999999999999999988 99884

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.6e-06  Score=39.09  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=12.2

Q ss_pred             ccCCCcccCCChHHHHHhHhhhCC
Q psy12030        207 QCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       207 ~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      .|.+||+.|..++.|++|.-.|+|
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            445555555555555555555544

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.1e-06  Score=38.68  Aligned_cols=25  Identities=32%  Similarity=0.647  Sum_probs=19.0

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ..|.+||++|...+.|.+|+.+|+|
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            4577788888888888888777766

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.8e-06  Score=38.70  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=23.2

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      |.|+.||......+-|..|+++|++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             ccccccCcccCCHHHHHHHHHHhcC
Confidence            7899999999999999999999987

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=4.9e-06  Score=36.86  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=18.3

Q ss_pred             ccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        207 QCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       207 ~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +|+.|.+.|.++..|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            46777777777777777777777664

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.1e-06  Score=38.25  Aligned_cols=28  Identities=29%  Similarity=0.632  Sum_probs=21.2

Q ss_pred             CCcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      +||+|.+|.....+.++|..|++..|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            4777888877777788888887777765

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.76  E-value=9.7e-06  Score=36.75  Aligned_cols=25  Identities=32%  Similarity=0.748  Sum_probs=20.8

Q ss_pred             CCcccCC--CcccCCChHHHHHhHhhh
Q psy12030        204 PKYQCPH--CPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       204 ~~~~C~~--C~~~f~~~~~l~~H~~~~  228 (245)
                      .||+|+.  |++.|+..+.|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4788876  888999999998888876

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1e-05  Score=37.45  Aligned_cols=26  Identities=27%  Similarity=0.659  Sum_probs=21.9

Q ss_pred             ceeCCC--CCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACNV--CGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~~--C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ||.|.+  |++++...++|++|++.+||
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            578877  88999999999999988765

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.74  E-value=9.9e-06  Score=35.26  Aligned_cols=23  Identities=30%  Similarity=0.801  Sum_probs=14.5

Q ss_pred             eeCCCCCCccCChhHHHHHHhHH
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h  199 (245)
                      |+|..|.+.|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            45666666666666666666655

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.2e-05  Score=36.30  Aligned_cols=26  Identities=31%  Similarity=0.588  Sum_probs=15.8

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ||+|..|.+.-.+.+.|..|++.|+|
T Consensus         3 pfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           3 PFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             cceeeecccccCCchheEEeeecccC
Confidence            45666666666666666666666654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.69  E-value=1.5e-05  Score=39.79  Aligned_cols=30  Identities=23%  Similarity=0.598  Sum_probs=23.6

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      .+.|.|.+|++.|.+..+|--|++.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            456888888888888888888888876654

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=7.4e-06  Score=37.89  Aligned_cols=28  Identities=36%  Similarity=0.736  Sum_probs=25.5

Q ss_pred             CCceecccccccccChhHHhcchhcccC
Q psy12030         67 SKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        67 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ++||.|++|+..|..+..+.-|.+.|-|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            4789999999999999999999999866

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=2e-05  Score=35.81  Aligned_cols=24  Identities=38%  Similarity=0.697  Sum_probs=16.5

Q ss_pred             CcccCCCcccCCChHHHHHhHhhh
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~  228 (245)
                      ||.|..|+..|..+.+|.+||+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            566777777777777777777644

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=3.3e-05  Score=34.14  Aligned_cols=26  Identities=35%  Similarity=0.554  Sum_probs=21.0

Q ss_pred             eCCCCCCccCChhHHHHHHhHHhCCCC
Q psy12030        178 ACNVCGKGYRYKTGLYRHKREECGQEP  204 (245)
Q Consensus       178 ~C~~C~~~f~~~~~l~~H~~~h~~~~~  204 (245)
                      .|+.|.+.|.++-.|..|.+.|+| |+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htg-ek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTG-EK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSS-CC
T ss_pred             cCcchHHHHHHhHhhhhccccccC-CC
Confidence            578888888888888888888887 53

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=8e-06  Score=38.16  Aligned_cols=26  Identities=19%  Similarity=0.480  Sum_probs=16.7

Q ss_pred             CCcccCC--CcccCCChHHHHHhH-hhhC
Q psy12030        204 PKYQCPH--CPHKAKHKANLKTHI-AIKH  229 (245)
Q Consensus       204 ~~~~C~~--C~~~f~~~~~l~~H~-~~~~  229 (245)
                      +||.|++  |++.|+..++-.+|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            4666765  777777777777775 4443

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.47  E-value=5.9e-05  Score=32.73  Aligned_cols=24  Identities=25%  Similarity=0.571  Sum_probs=22.3

Q ss_pred             cccCCCcccCCChHHHHHhHhhhC
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      |+|..|..+|..++.|.+|++.|-
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999874

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=6.2e-05  Score=34.07  Aligned_cols=29  Identities=17%  Similarity=0.552  Sum_probs=18.5

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      |.-|.|..|...|..+-.|+.||..|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            34466666666666666666666666654

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00012  Score=33.31  Aligned_cols=28  Identities=18%  Similarity=0.390  Sum_probs=23.6

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHHhCCC
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREECGQE  203 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~  203 (245)
                      ||.|..|.......++|..|+++-|++|
T Consensus         2 py~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccccccccccccchhhhhhhhcccccC
Confidence            6888889888888999999998887754

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=9.7e-05  Score=32.99  Aligned_cols=26  Identities=19%  Similarity=0.414  Sum_probs=21.6

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHh
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREEC  200 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~  200 (245)
                      +||+|..|.++-...+.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            46888888888888888888888873

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.23  E-value=0.00012  Score=34.13  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=20.9

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhCCC
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~~~  231 (245)
                      ||.|.+|++.|+.+.-|.+|.+.-|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            678888888888888888887766654

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=8.6e-05  Score=37.17  Aligned_cols=24  Identities=17%  Similarity=0.556  Sum_probs=21.5

Q ss_pred             CCCcccCCCcccCCChHHHHHhHh
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIA  226 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~  226 (245)
                      -+||.|..|++.|.-..++.+|..
T Consensus         3 iKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           3 IKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCceeccchhhhhhhHHHHHHhhh
Confidence            689999999999999999999864

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00013  Score=33.10  Aligned_cols=24  Identities=21%  Similarity=0.616  Sum_probs=21.2

Q ss_pred             ceeCCCCCCccCChhHHHHHHhHH
Q psy12030        176 VFACNVCGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       176 ~~~C~~C~~~f~~~~~l~~H~~~h  199 (245)
                      ||.|..|+.+|..+.+|..|++.-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            588999999999999999999764

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.16  E-value=8.9e-05  Score=36.95  Aligned_cols=28  Identities=14%  Similarity=0.507  Sum_probs=25.5

Q ss_pred             CCceecccccccccChhHHhcchhcccC
Q psy12030         67 SKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        67 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      .+.|.|.+|++.|.+...|--||+.|..
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcc
Confidence            4679999999999999999999999865

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00016  Score=35.72  Aligned_cols=28  Identities=18%  Similarity=0.526  Sum_probs=23.8

Q ss_pred             CCCCccc--CCCcccCCChHHHHHhHhhhC
Q psy12030        202 QEPKYQC--PHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       202 ~~~~~~C--~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      ++|||.|  +-|+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4899999  459999999999999988774

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.14  E-value=0.00012  Score=33.23  Aligned_cols=26  Identities=15%  Similarity=0.373  Sum_probs=12.5

Q ss_pred             CcccCC--CcccCCChHHHHHhHhhhCC
Q psy12030        205 KYQCPH--CPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       205 ~~~C~~--C~~~f~~~~~l~~H~~~~~~  230 (245)
                      ||.|.+  |.+.|.+...|.+|..+|+|
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            444433  55555555555555444444

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00024  Score=32.11  Aligned_cols=25  Identities=32%  Similarity=0.701  Sum_probs=19.6

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      |.|.+|...|...-.|..|+..|+|
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccC
Confidence            6777788888888888888877776

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00019  Score=31.08  Aligned_cols=23  Identities=26%  Similarity=0.726  Sum_probs=17.6

Q ss_pred             CcccCCCcccCCChHHHHHhHhh
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAI  227 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~  227 (245)
                      ||+|..|...|..+.+|..|+..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            67888888888888888877653

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00037  Score=31.64  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=23.8

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      +||+|..|.......++|..|++.-|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            368999999999999999999988776

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00035  Score=31.25  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=18.5

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhC
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      |-+|+.|.++.+++..|+.|.++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4567777777777777777777763

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00028  Score=32.79  Aligned_cols=25  Identities=20%  Similarity=0.590  Sum_probs=20.1

Q ss_pred             ceeCCC--CCCccCChhHHHHHH-hHHh
Q psy12030        176 VFACNV--CGKGYRYKTGLYRHK-REEC  200 (245)
Q Consensus       176 ~~~C~~--C~~~f~~~~~l~~H~-~~h~  200 (245)
                      ||.|..  |.++|.+.++..+|+ ++|.
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccccCCChhhhhcchhhhhhhcccccc
Confidence            678876  889999999888887 6663

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.77  E-value=0.00063  Score=30.64  Aligned_cols=24  Identities=25%  Similarity=0.632  Sum_probs=16.0

Q ss_pred             ceeCCC--CCCccCChhHHHHHHhHH
Q psy12030        176 VFACNV--CGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       176 ~~~C~~--C~~~f~~~~~l~~H~~~h  199 (245)
                      ||+|+.  |++.|...+.|.+|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            456643  777777777777777665

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.66  E-value=0.001  Score=30.06  Aligned_cols=26  Identities=35%  Similarity=0.676  Sum_probs=21.7

Q ss_pred             ceeCCC--CCCccCChhHHHHHHhHHhC
Q psy12030        176 VFACNV--CGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       176 ~~~C~~--C~~~f~~~~~l~~H~~~h~~  201 (245)
                      ||.|..  |.+.|.+-..|.+|..+|+|
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            567755  89999999999999988887

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00049  Score=34.37  Aligned_cols=21  Identities=24%  Similarity=0.651  Sum_probs=10.4

Q ss_pred             CCccCCCCCCcCCChHHHHhh
Q psy12030        149 PKYQCPHCPHRAKHKANLKTH  169 (245)
Q Consensus       149 ~~~~C~~C~~~f~~~~~l~~H  169 (245)
                      +||.|.+|++.|..+..+.+|
T Consensus         4 KPYeC~~C~KrFMWRDSF~RH   24 (44)
T d2csha2           4 KPYECNICAKRFMWRDSFHRH   24 (44)
T ss_dssp             CCEECSSSCCEESCHHHHHHH
T ss_pred             CceeccchhhhhhhHHHHHHh
Confidence            445555555555555444444

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00096  Score=29.68  Aligned_cols=25  Identities=36%  Similarity=0.877  Sum_probs=19.1

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhC
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      .|.|+.|+-....+++|+.|++.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            3778888888888888888877544

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0012  Score=28.51  Aligned_cols=22  Identities=23%  Similarity=0.621  Sum_probs=16.3

Q ss_pred             ccccCcCCCccCchhHHHhHHh
Q psy12030        121 MFACDVCGKEYKYKRGLYRHKK  142 (245)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~  142 (245)
                      ||+|+-|+..|..+..|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            4777777777777777777764

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.00058  Score=33.64  Aligned_cols=26  Identities=19%  Similarity=0.514  Sum_probs=13.4

Q ss_pred             CCCccCCC--CCCcCCChHHHHhhhcCC
Q psy12030        148 EPKYQCPH--CPHRAKHKANLKTHIAPQ  173 (245)
Q Consensus       148 ~~~~~C~~--C~~~f~~~~~l~~H~~~h  173 (245)
                      ++||.|..  |+.+|.+...|..|.+.|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            55666633  555555555555554433

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0027  Score=28.07  Aligned_cols=22  Identities=36%  Similarity=0.655  Sum_probs=15.0

Q ss_pred             CcccCCCcccCCChHHHHHhHh
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIA  226 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~  226 (245)
                      ||+|..||+.+-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5677777777777777766653

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.17  E-value=0.002  Score=27.88  Aligned_cols=23  Identities=35%  Similarity=0.801  Sum_probs=12.1

Q ss_pred             cccCCCcccCCChHHHHHhHhhh
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~~  228 (245)
                      |.|+.|-+.|..+.++..|.++-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            44555555555555555555443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.15  E-value=0.0015  Score=30.33  Aligned_cols=26  Identities=23%  Similarity=0.544  Sum_probs=20.9

Q ss_pred             ceecccccccccChhHHhcchhcccC
Q psy12030         69 GFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        69 ~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      ||.|.+|++.|..+..|.+|...-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            58889999999998888888765444

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0023  Score=33.12  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=18.7

Q ss_pred             CcccCCCcccCCChHHHHHhHhhh
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~  228 (245)
                      -|.|..|||.|.....|+.|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            477888888888888888887655

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0023  Score=33.13  Aligned_cols=26  Identities=27%  Similarity=0.709  Sum_probs=23.0

Q ss_pred             CceeCCCCCCccCChhHHHHHHhHHh
Q psy12030        175 GVFACNVCGKGYRYKTGLYRHKREEC  200 (245)
Q Consensus       175 ~~~~C~~C~~~f~~~~~l~~H~~~h~  200 (245)
                      +.|.|..||+.|.....|+.|...|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            34899999999999999999998873

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.0037  Score=27.61  Aligned_cols=19  Identities=37%  Similarity=0.784  Sum_probs=8.7

Q ss_pred             ccCCCCCCcCCChHHHHhh
Q psy12030        151 YQCPHCPHRAKHKANLKTH  169 (245)
Q Consensus       151 ~~C~~C~~~f~~~~~l~~H  169 (245)
                      |.|..||+.+..+.+|..|
T Consensus         2 f~c~kcgkcyfrkenlleh   20 (28)
T d2dlqa2           2 FECPKCGKCYFRKENLLEH   20 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHH
T ss_pred             CccccchhhhhhHhHHHHH
Confidence            4444444444444444444

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.82  E-value=0.0046  Score=26.73  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=20.7

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHh
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREEC  200 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~  200 (245)
                      |.|+.|-+.|..+.++..|.++-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            789999999999999999987653

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0091  Score=26.87  Aligned_cols=28  Identities=25%  Similarity=0.617  Sum_probs=20.6

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      .|.|..||+...+...++-|+..-|+..
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~~   29 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNSL   29 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             ceechhHHHHHhhccCceEEEeecccCC
Confidence            3678888888888888888877666544

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.006  Score=27.11  Aligned_cols=24  Identities=25%  Similarity=0.545  Sum_probs=18.0

Q ss_pred             cccCcCCCccCchhHHHhHHhhhc
Q psy12030        122 FACDVCGKEYKYKRGLYRHKKFEC  145 (245)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~~h~  145 (245)
                      -+|+.|+....++..|..|.|+|.
T Consensus         3 ekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGC
T ss_pred             ccCcccccccCcHHHHHHhhcccc
Confidence            457777777788888888877764

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0054  Score=29.44  Aligned_cols=19  Identities=16%  Similarity=0.149  Sum_probs=10.9

Q ss_pred             ccCCChHHHHHhHhhhCCC
Q psy12030        213 HKAKHKANLKTHIAIKHSD  231 (245)
Q Consensus       213 ~~f~~~~~l~~H~~~~~~~  231 (245)
                      +.|.....|..|+++|+|+
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            4455666666666666553

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.012  Score=26.24  Aligned_cols=18  Identities=11%  Similarity=0.497  Sum_probs=14.9

Q ss_pred             CcccCCChHHHHHhHhhh
Q psy12030        211 CPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       211 C~~~f~~~~~l~~H~~~~  228 (245)
                      |++.|.+.+.+++|+-+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            888888888888888765

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.011  Score=27.90  Aligned_cols=26  Identities=12%  Similarity=0.369  Sum_probs=18.1

Q ss_pred             CcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      .|.|..||+.|..+..+.+|...-.|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            46777777777777777777665544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.013  Score=27.71  Aligned_cols=25  Identities=32%  Similarity=0.784  Sum_probs=18.5

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      |.|..||++|.....+.+|.....|
T Consensus         5 fvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeecccccchhcchHHHHHhhhcCC
Confidence            6777788888887777777766554

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.25  E-value=0.016  Score=27.42  Aligned_cols=28  Identities=29%  Similarity=0.576  Sum_probs=17.0

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      +..|+|.+|.+.+...+++-+|..+-|.
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            3346666666666666666666655554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.023  Score=25.10  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=19.7

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHh
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREEC  200 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~  200 (245)
                      |.|+.|+-....+++|..|++.-|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            778888888888888888887654

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.18  E-value=0.023  Score=26.51  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=18.9

Q ss_pred             CCcccCCCcccCCChHHHHHhHh
Q psy12030        204 PKYQCPHCPHKAKHKANLKTHIA  226 (245)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~  226 (245)
                      ..|-|+-||-.|++.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            35888889999999999988864

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.05  E-value=0.016  Score=26.50  Aligned_cols=20  Identities=15%  Similarity=0.343  Sum_probs=10.7

Q ss_pred             CcccCCChHHHHHhHhhhCC
Q psy12030        211 CPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       211 C~~~f~~~~~l~~H~~~~~~  230 (245)
                      |+-.|.....|..|+-.|+|
T Consensus        11 C~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             GCCEESSHHHHHHHHHHHHC
T ss_pred             cchhhccchhhhHHhhhhcC
Confidence            55555555555555555544

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.024  Score=27.09  Aligned_cols=19  Identities=21%  Similarity=0.273  Sum_probs=15.1

Q ss_pred             CCccCChhHHHHHHhHHhC
Q psy12030        183 GKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       183 ~~~f~~~~~l~~H~~~h~~  201 (245)
                      ++.|.....|..|++.|+|
T Consensus        14 ~~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHC
T ss_pred             CCcchhHHHHHHHHhhcCC
Confidence            4568888888888888887

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.90  E-value=0.033  Score=28.55  Aligned_cols=30  Identities=27%  Similarity=0.625  Sum_probs=19.1

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSDR  232 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  232 (245)
                      +.|-.|++|+....++.+|++|+..-|=.+
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf~k   51 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTSCS
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            556667777776667777777766555433

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.17  E-value=0.02  Score=28.41  Aligned_cols=11  Identities=0%  Similarity=-0.423  Sum_probs=6.3

Q ss_pred             CCCCCCCCCCC
Q psy12030        230 SDRILPPQEGR  240 (245)
Q Consensus       230 ~~~~~~C~~C~  240 (245)
                      |+.|-.|++||
T Consensus        17 g~~P~~CPvCg   27 (37)
T d1nnqa2          17 DEAPEYCPVCG   27 (37)
T ss_dssp             SCCCSBCTTTC
T ss_pred             CCCCCcCCCCC
Confidence            44555666665

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.074  Score=23.80  Aligned_cols=26  Identities=31%  Similarity=0.628  Sum_probs=19.1

Q ss_pred             ccccCcCCCccCchhHHHhHHhhhcC
Q psy12030        121 MFACDVCGKEYKYKRGLYRHKKFECG  146 (245)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~~h~~  146 (245)
                      .|+|..||+...+...+..|....+.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            37788888888888888888665443

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=92.62  E-value=0.027  Score=27.69  Aligned_cols=25  Identities=12%  Similarity=0.107  Sum_probs=14.4

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhCCCCCCCCCCCC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKHSDRILPPQEGR  240 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~  240 (245)
                      ++-|.|++||..             +.|+.|-.|++||
T Consensus         3 ~~~~vC~vCGyi-------------~~g~~Pe~CPvCg   27 (36)
T d1yuza2           3 DKFHLCPICGYI-------------HKGEDFEKCPICF   27 (36)
T ss_dssp             CCEEECSSSCCE-------------EESSCCSBCTTTC
T ss_pred             CCEEECCCCCCE-------------eeCCCCCcCCCCC
Confidence            345666666643             3345566666666

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.035  Score=30.97  Aligned_cols=17  Identities=24%  Similarity=0.653  Sum_probs=8.8

Q ss_pred             ceecccccccccChhHH
Q psy12030         69 GFECQVCGKRYKYKRGL   85 (245)
Q Consensus        69 ~~~C~~C~~~f~~~~~l   85 (245)
                      .|.|+.|++.|.....+
T Consensus        14 ~y~Cp~C~~~ys~Lda~   30 (62)
T d1vd4a_          14 SFKCPVCSSTFTDLEAN   30 (62)
T ss_dssp             EEECSSSCCEEEHHHHH
T ss_pred             ceECCCCCCCcchhhHH
Confidence            45555555555544443

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.37  E-value=0.075  Score=23.18  Aligned_cols=18  Identities=28%  Similarity=0.600  Sum_probs=9.2

Q ss_pred             CCCccCChhHHHHHHhHH
Q psy12030        182 CGKGYRYKTGLYRHKREE  199 (245)
Q Consensus       182 C~~~f~~~~~l~~H~~~h  199 (245)
                      |+++|..-..|..|+-+|
T Consensus         9 c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           9 CGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHHHH
T ss_pred             chHHHhhccceEEEeecc
Confidence            555555555555555444

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.16  E-value=0.043  Score=23.99  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             cccC--CCcccCCChHHHHHhHhhhC
Q psy12030        206 YQCP--HCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       206 ~~C~--~C~~~f~~~~~l~~H~~~~~  229 (245)
                      |.|.  -|++.|.....|..|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            5564  49999999999999998875

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.03  Score=31.86  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=17.4

Q ss_pred             CcccCCCcccCCChHHHHHhHhh
Q psy12030        205 KYQCPHCPHKAKHKANLKTHIAI  227 (245)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~  227 (245)
                      .|-|..|++.|.+...|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            47788888888888888877764

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.79  E-value=0.078  Score=25.00  Aligned_cols=25  Identities=24%  Similarity=0.567  Sum_probs=21.8

Q ss_pred             eeCCCCCCccCChhHHHHHHhHHhC
Q psy12030        177 FACNVCGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~~h~~  201 (245)
                      |.|.+|.+++..-+++-+|..+-|.
T Consensus         9 yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           9 YRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             EEeehhhHHHHHHHHHHHHHHhhcc
Confidence            8999999999999999999877653

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.31  E-value=0.063  Score=24.97  Aligned_cols=21  Identities=29%  Similarity=0.634  Sum_probs=17.0

Q ss_pred             eeCCCCCCccCChhHHHHHHh
Q psy12030        177 FACNVCGKGYRYKTGLYRHKR  197 (245)
Q Consensus       177 ~~C~~C~~~f~~~~~l~~H~~  197 (245)
                      |.|.-||-.|.+.+.|..|+.
T Consensus         9 f~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHTT
T ss_pred             eeccccceeecChhHHHhhhh
Confidence            778888888888888888764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.042  Score=31.22  Aligned_cols=26  Identities=15%  Similarity=0.372  Sum_probs=22.3

Q ss_pred             CCceecccccccccChhHHhcchhcc
Q psy12030         67 SKGFECQVCGKRYKYKRGLHRHKQDE   92 (245)
Q Consensus        67 ~~~~~C~~C~~~f~~~~~l~~H~~~h   92 (245)
                      ...|-|..|++.|.+...|..|+++.
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ksK   38 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRSK   38 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CCEEecccccCccCCHHHHHHHHccc
Confidence            34589999999999999999998753

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.20  E-value=0.16  Score=23.07  Aligned_cols=25  Identities=28%  Similarity=0.671  Sum_probs=18.6

Q ss_pred             eeCCC--CCCccCChhHHHHHHhHHhC
Q psy12030        177 FACNV--CGKGYRYKTGLYRHKREECG  201 (245)
Q Consensus       177 ~~C~~--C~~~f~~~~~l~~H~~~h~~  201 (245)
                      |.|..  |+..|...-.|..|+-.|+|
T Consensus         4 ~iCsf~dC~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1           4 YICSFADCGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             EECSSGGGCCEESSHHHHHHHHHHHHC
T ss_pred             eEeeCCCcchhhccchhhhHHhhhhcC
Confidence            55543  78888888888888888876

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.06  E-value=0.18  Score=22.44  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=16.0

Q ss_pred             CcccC--CCcccCCChHHHHHhHhhhCC
Q psy12030        205 KYQCP--HCPHKAKHKANLKTHIAIKHS  230 (245)
Q Consensus       205 ~~~C~--~C~~~f~~~~~l~~H~~~~~~  230 (245)
                      .|.|.  .|+..|..+.++.+|....|.
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhcc
Confidence            35563  377777777777777655443

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.064  Score=29.89  Aligned_cols=10  Identities=40%  Similarity=1.258  Sum_probs=3.9

Q ss_pred             cccCcCCCcc
Q psy12030        122 FACDVCGKEY  131 (245)
Q Consensus       122 ~~C~~C~~~f  131 (245)
                      |.|+.|++.|
T Consensus        15 y~Cp~C~~~y   24 (62)
T d1vd4a_          15 FKCPVCSSTF   24 (62)
T ss_dssp             EECSSSCCEE
T ss_pred             eECCCCCCCc
Confidence            3333333333

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.096  Score=28.88  Aligned_cols=27  Identities=37%  Similarity=0.815  Sum_probs=22.9

Q ss_pred             CCCcccCCCcccCCChHHHHHhHhhhC
Q psy12030        203 EPKYQCPHCPHKAKHKANLKTHIAIKH  229 (245)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~~  229 (245)
                      ...|+|..|.-.|.+...|..|+..|.
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhcc
Confidence            346999999999999999999988775

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.51  E-value=0.3  Score=24.86  Aligned_cols=30  Identities=23%  Similarity=0.316  Sum_probs=24.1

Q ss_pred             cCCCceecccccccccChhHHhcchhcccC
Q psy12030         65 QYSKGFECQVCGKRYKYKRGLHRHKQDECG   94 (245)
Q Consensus        65 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   94 (245)
                      .++.|-.|++|+.+......|.+|+...|-
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            346678999999999999999999876543

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.74  E-value=0.37  Score=21.35  Aligned_cols=17  Identities=18%  Similarity=0.311  Sum_probs=10.5

Q ss_pred             CcccCCChHHHHHhHhh
Q psy12030        211 CPHKAKHKANLKTHIAI  227 (245)
Q Consensus       211 C~~~f~~~~~l~~H~~~  227 (245)
                      ||+.|+++..|..|.+.
T Consensus         8 c~kifsnrqylnhh~ky   24 (30)
T d2dlka1           8 CGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TCCEESSHHHHHHHHHH
T ss_pred             chhhhccHHHHHhHHHH
Confidence            66666666666666553

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=81.96  E-value=0.23  Score=26.55  Aligned_cols=11  Identities=27%  Similarity=0.646  Sum_probs=5.2

Q ss_pred             ccCCCCCCcCC
Q psy12030        151 YQCPHCPHRAK  161 (245)
Q Consensus       151 ~~C~~C~~~f~  161 (245)
                      |.|.+||..+.
T Consensus         4 y~C~~CgyiYd   14 (53)
T d1iroa_           4 YTCTVCGYIYN   14 (53)
T ss_dssp             EEETTTCCEEC
T ss_pred             eEcCCCCcEEC
Confidence            44444544443

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.08  E-value=0.86  Score=21.62  Aligned_cols=23  Identities=13%  Similarity=0.180  Sum_probs=15.6

Q ss_pred             cccCCCcccCCChHHHHHhHhhh
Q psy12030        206 YQCPHCPHKAKHKANLKTHIAIK  228 (245)
Q Consensus       206 ~~C~~C~~~f~~~~~l~~H~~~~  228 (245)
                      --|..|+-.|.+.+.+..|.+..
T Consensus         9 rYC~~CDI~Fn~~~T~~aHKk~Y   31 (36)
T d1fu9a_           9 KYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHHHHT
T ss_pred             hHHhhCCceehhHHHHHHHHHhc
Confidence            34777777777777777776543