Psyllid ID: psy12033

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MPFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI
Secondary Structure (PSIPRED)
cccEEEEEEEEEcccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mpffskftfrfgldsscgqrilpIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHvvrgiprdtwNMFLTFYDTI
Flexible Loop (DISEMBL)
MPFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHThvvrgiprdTWNMFLTFYDTI
Low Complexity Region (SEG)
MPFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI
Disordered region (IsUnstruct)
**FFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYD**
Disordered Region (DISOPRED)
MPFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI
Disordered Region (DISEMBL)
MPFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI
Disordered Region (DISPRO)
MPFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
A4IHK8	303	DCN1-like protein 3 OS=Xe	yes	N/A	0.886	0.231	0.513	3e-15
Q6DFA1	303	DCN1-like protein 3 OS=Xe	N/A	N/A	0.886	0.231	0.513	4e-15
Q4V8B2	304	DCN1-like protein 3 OS=Ra	yes	N/A	0.886	0.230	0.513	5e-15
Q5R9G1	304	DCN1-like protein 3 OS=Po	yes	N/A	0.886	0.230	0.513	5e-15
Q8K0V2	304	DCN1-like protein 3 OS=Mu	yes	N/A	0.886	0.230	0.513	5e-15
Q8IWE4	304	DCN1-like protein 3 OS=Ho	yes	N/A	0.886	0.230	0.513	5e-15
Q5E9V1	304	DCN1-like protein 3 OS=Bo	yes	N/A	0.886	0.230	0.513	5e-15
Q6PH85	259	DCN1-like protein 2 OS=Ho	no	N/A	0.848	0.258	0.421	2e-07
Q8BZJ7	259	DCN1-like protein 2 OS=Mu	no	N/A	0.822	0.250	0.418	1e-06
Q9QZ73	259	DCN1-like protein 1 OS=Mu	no	N/A	0.848	0.258	0.394	5e-06

>sp|A4IHK8|DCNL3_XENTR DCN1-like protein 3 OS=Xenopus tropicalis GN=dcun1d3 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 4/74 (5%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTF+FGLDS  GQR L  ++AI LWKLVF+     ++  IL  WL+FL+++   ++GI 
Sbjct: 183 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NKPLILDQWLDFLTENPSGIKGIS 238

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F   I
Sbjct: 239 RDTWNMFLNFTQVI 252

Xenopus tropicalis (taxid: 8364)

>sp|Q6DFA1|DCNL3_XENLA DCN1-like protein 3 OS=Xenopus laevis GN=dcun1d3 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 4/74 (5%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTF+FGLDS  GQR L  ++AI LWKLVF+     ++  IL  WL FL+++   ++GI 
Sbjct: 183 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NKPLILDQWLEFLTENPSGIKGIS 238

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F   I
Sbjct: 239 RDTWNMFLNFTQVI 252

Xenopus laevis (taxid: 8355)

>sp|Q4V8B2|DCNL3_RAT DCN1-like protein 3 OS=Rattus norvegicus GN=Dcun1d3 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 4/74 (5%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct: 184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F   I
Sbjct: 240 RDTWNMFLNFTQVI 253

Rattus norvegicus (taxid: 10116)

>sp|Q5R9G1|DCNL3_PONAB DCN1-like protein 3 OS=Pongo abelii GN=DCUN1D3 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 4/74 (5%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct: 184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F   I
Sbjct: 240 RDTWNMFLNFTQVI 253

Pongo abelii (taxid: 9601)

>sp|Q8K0V2|DCNL3_MOUSE DCN1-like protein 3 OS=Mus musculus GN=Dcun1d3 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 4/74 (5%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct: 184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F   I
Sbjct: 240 RDTWNMFLNFTQVI 253

Mus musculus (taxid: 10090)

>sp|Q8IWE4|DCNL3_HUMAN DCN1-like protein 3 OS=Homo sapiens GN=DCUN1D3 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 4/74 (5%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct: 184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F   I
Sbjct: 240 RDTWNMFLNFTQVI 253

Homo sapiens (taxid: 9606)

>sp|Q5E9V1|DCNL3_BOVIN DCN1-like protein 3 OS=Bos taurus GN=DCUN1D3 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 4/74 (5%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct: 184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F   I
Sbjct: 240 RDTWNMFLNFTQVI 253

Bos taurus (taxid: 9913)

>sp|Q6PH85|DCNL2_HUMAN DCN1-like protein 2 OS=Homo sapiens GN=DCUN1D2 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 9/76 (11%)

Query: 4   FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRG 63
           F +FTF F  +   GQ+ L ++MA+  WKLV S R        L  W  FL +H    R 
Sbjct: 157 FYQFTFTFAKNP--GQKGLDLEMAVAYWKLVLSGRFK-----FLDLWNTFLMEHHK--RS 207

Query: 64  IPRDTWNMFLTFYDTI 79
           IPRDTWN+ L F + I
Sbjct: 208 IPRDTWNLLLDFGNMI 223

May contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.

Homo sapiens (taxid: 9606)

>sp|Q8BZJ7|DCNL2_MOUSE DCN1-like protein 2 OS=Mus musculus GN=Dcun1d2 PE=2 SV=3

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 9/74 (12%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTF F  +   GQ+ L ++MA+  WKLV S R        L  W  FL +H    R IP
Sbjct: 159 QFTFTFAKNP--GQKGLDLEMAVAYWKLVLSGRFK-----FLDLWNTFLLEHHK--RSIP 209

Query: 66  RDTWNMFLTFYDTI 79
           RDTWN+ L F + I
Sbjct: 210 RDTWNLLLDFGNMI 223

May contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.

Mus musculus (taxid: 10090)

>sp|Q9QZ73|DCNL1_MOUSE DCN1-like protein 1 OS=Mus musculus GN=Dcun1d1 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 4   FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRG 63
           F +FTF F  +   GQ+ L ++MAI  W LV + R        L  W  FL +H    R 
Sbjct: 157 FYQFTFNFAKNP--GQKGLDLEMAIAYWNLVLNGRFK-----FLDLWNKFLLEHHK--RS 207

Query: 64  IPRDTWNMFLTFYDTI 79
           IP+DTWN+ L F   I
Sbjct: 208 IPKDTWNLLLDFSSMI 223

Part of an E3 ubiquitin ligase complex for neddylation. Required for neddylation of cullin components of E3 cullin-RING ubiquitin ligase complexes by enhancing the rate of cullins neddylation. Functions to recruit the NEDD8-charged E2 enzyme to the cullin component. Involved in the release of inhibitory effets of CAND1 on cullin-RING ligase E3 complex assembly and activity. Acts also as an oncogene facilitating malignant transformation and carcinogenic in vivo.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
270012281	320	hypothetical protein TcasGA2_TC006404 [T	0.873	0.215	0.621	2e-20
328793007	2189	PREDICTED: hypothetical protein LOC72467	0.860	0.031	0.648	4e-20
350406994	2185	PREDICTED: hypothetical protein LOC10074	0.860	0.031	0.648	5e-20
91088679	297	PREDICTED: similar to defective in culli	0.873	0.232	0.621	7e-20
380028884	297	PREDICTED: DCN1-like protein 3-like [Api	0.860	0.228	0.648	1e-18
193648054	310	PREDICTED: DCN1-like protein 3-like [Acy	0.873	0.222	0.581	2e-18
322791905	330	hypothetical protein SINV_02051 [Solenop	0.860	0.206	0.648	2e-18
332027150	330	DCN1-like protein 3 [Acromyrmex echinati	0.860	0.206	0.635	6e-18
383852968	329	PREDICTED: DCN1-like protein 3-like [Meg	0.860	0.206	0.635	6e-18
307197873	300	DCN1-like protein 3 [Harpegnathos saltat	0.860	0.226	0.635	8e-18

>gi|270012281|gb|EFA08729.1| hypothetical protein TcasGA2_TC006404 [Tribolium castaneum]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/74 (62%), Positives = 56/74 (75%), Gaps = 5/74 (6%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTFRFGLDS+ GQRILP DMA++LW+LVF++R    E  IL  WL+FL  H   VRGIP
Sbjct: 204 RFTFRFGLDSAAGQRILPTDMAVVLWRLVFTMR----EPPILARWLSFLESH-QSVRGIP 258

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F + +
Sbjct: 259 RDTWNMFLNFAEAV 272

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793007|ref|XP_001120561.2| PREDICTED: hypothetical protein LOC724670 [Apis mellifera]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/74 (64%), Positives = 56/74 (75%), Gaps = 6/74 (8%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTFRFGLD + GQRILP DMAI+LWKLVF+IR    E  +L+ WL FL    H VRGIP
Sbjct: 216 RFTFRFGLDVNSGQRILPADMAIVLWKLVFTIR----EPPLLSKWLKFL--ECHHVRGIP 269

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F ++I
Sbjct: 270 RDTWNMFLNFAESI 283

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406994|ref|XP_003487947.1| PREDICTED: hypothetical protein LOC100746010 [Bombus impatiens]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/74 (64%), Positives = 56/74 (75%), Gaps = 6/74 (8%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTFRFGLD + GQRILP DMAI+LWKLVF+IR    E  +L+ WL FL    H VRGIP
Sbjct: 211 RFTFRFGLDVNSGQRILPADMAIVLWKLVFTIR----EPPLLSRWLKFL--ECHHVRGIP 264

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F ++I
Sbjct: 265 RDTWNMFLNFAESI 278

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088679|ref|XP_974920.1| PREDICTED: similar to defective in cullin neddylation protein [Tribolium castaneum]

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/74 (62%), Positives = 56/74 (75%), Gaps = 5/74 (6%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTFRFGLDS+ GQRILP DMA++LW+LVF++R    E  IL  WL+FL  H   VRGIP
Sbjct: 181 RFTFRFGLDSAAGQRILPTDMAVVLWRLVFTMR----EPPILARWLSFLESH-QSVRGIP 235

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F + +
Sbjct: 236 RDTWNMFLNFAEAV 249

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028884|ref|XP_003698114.1| PREDICTED: DCN1-like protein 3-like [Apis florea]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 56/74 (75%), Gaps = 6/74 (8%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTFRFGLD + GQRILP DMAI+LWKLVF+IR    E  +L+ WL FL    H VRGIP
Sbjct: 186 RFTFRFGLDVNSGQRILPADMAIVLWKLVFTIR----EPPLLSKWLKFL--ECHHVRGIP 239

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F ++I
Sbjct: 240 RDTWNMFLNFAESI 253

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193648054|ref|XP_001944320.1| PREDICTED: DCN1-like protein 3-like [Acyrthosiphon pisum]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/74 (58%), Positives = 57/74 (77%), Gaps = 5/74 (6%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTF+FGLD++ GQRILP+D AI+LWKL+F+IR    E  IL  WLNFL    + +RGIP
Sbjct: 196 RFTFKFGLDNAVGQRILPVDTAIVLWKLIFNIR----EPEILERWLNFLESQDN-IRGIP 250

Query: 66  RDTWNMFLTFYDTI 79
           +DTWNMFL F +++
Sbjct: 251 KDTWNMFLNFAESV 264

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322791905|gb|EFZ16067.1| hypothetical protein SINV_02051 [Solenopsis invicta]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 56/74 (75%), Gaps = 6/74 (8%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTFRFGLD + GQRILP DMAI LW+LVF+IR    E  +LT WLNFL    H +RGIP
Sbjct: 217 RFTFRFGLDVTSGQRILPADMAIDLWRLVFTIR----EPPLLTRWLNFL--ECHHIRGIP 270

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F ++I
Sbjct: 271 RDTWNMFLNFAESI 284

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027150|gb|EGI67243.1| DCN1-like protein 3 [Acromyrmex echinatior]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 56/74 (75%), Gaps = 6/74 (8%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTFRFGLD   GQRILP+DMAI LW+LVF+IR    E  +L+ WLNFL    H +RGIP
Sbjct: 217 RFTFRFGLDVMSGQRILPVDMAIDLWRLVFTIR----EPPLLSRWLNFL--ECHHIRGIP 270

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F ++I
Sbjct: 271 RDTWNMFLNFAESI 284

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852968|ref|XP_003701997.1| PREDICTED: DCN1-like protein 3-like [Megachile rotundata]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 56/74 (75%), Gaps = 6/74 (8%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTF+FGLD + GQRILP DMAI+LWKLVF+IR    E  +L+ WL FL    H VRGIP
Sbjct: 216 RFTFQFGLDVNSGQRILPADMAIVLWKLVFTIR----EPPLLSRWLKFL--ECHHVRGIP 269

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F ++I
Sbjct: 270 RDTWNMFLNFAESI 283

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197873|gb|EFN78972.1| DCN1-like protein 3 [Harpegnathos saltator]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 55/74 (74%), Gaps = 6/74 (8%)

Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTFRFGLD + GQRILP DMAI+LWKLVF+IR    E  +L  WL FL    H +RGIP
Sbjct: 187 RFTFRFGLDVTSGQRILPADMAIVLWKLVFTIR----EPPLLIRWLKFL--ECHHIRGIP 240

Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F ++I
Sbjct: 241 RDTWNMFLNFAESI 254

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
ZFIN|ZDB-GENE-070928-2	297	zgc:154015 "zgc:154015" [Danio	0.886	0.235	0.527	6.3e-15
UNIPROTKB|Q5E9V1	304	DCUN1D3 "DCN1-like protein 3"	0.886	0.230	0.513	4.9e-14
UNIPROTKB|E2RM58	304	DCUN1D3 "Uncharacterized prote	0.886	0.230	0.513	4.9e-14
UNIPROTKB|Q8IWE4	304	DCUN1D3 "DCN1-like protein 3"	0.886	0.230	0.513	4.9e-14
UNIPROTKB|F1RPB5	304	DCUN1D3 "Uncharacterized prote	0.886	0.230	0.513	4.9e-14
UNIPROTKB|Q5R9G1	304	DCUN1D3 "DCN1-like protein 3"	0.886	0.230	0.513	4.9e-14
MGI|MGI:2679003	304	Dcun1d3 "DCN1, defective in cu	0.886	0.230	0.513	4.9e-14
RGD|1308893	304	Dcun1d3 "DCN1, defective in cu	0.886	0.230	0.513	4.9e-14
UNIPROTKB|E1BTK1	303	DCUN1D3 "Uncharacterized prote	0.886	0.231	0.513	2.4e-13
ZFIN|ZDB-GENE-040625-171	204	dcun1d2 "DCN1, defective in cu	0.848	0.328	0.394	9.9e-08

ZFIN|ZDB-GENE-070928-2 zgc:154015 "zgc:154015" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 6.3e-15, P = 6.3e-15
 Identities = 39/74 (52%), Positives = 51/74 (68%)

Query:     6 KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
             +FTF+FGLD+  GQR L   +AI LW+LVF++    D   +L  WL+FLS++   VRGI 
Sbjct:   182 RFTFQFGLDAEQGQRSLQRSIAIALWRLVFTL----DTPPVLERWLDFLSENPCAVRGIS 237

Query:    66 RDTWNMFLTFYDTI 79
             RDTWNMFL F  +I
Sbjct:   238 RDTWNMFLNFTQSI 251

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5E9V1 DCUN1D3 "DCN1-like protein 3" [Bos taurus (taxid:9913)]

 Score = 183 (69.5 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 38/74 (51%), Positives = 50/74 (67%)

Query:     6 KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
             +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct:   184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query:    66 RDTWNMFLTFYDTI 79
             RDTWNMFL F   I
Sbjct:   240 RDTWNMFLNFTQVI 253

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=ISS

GO:0010225 "response to UV-C" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0010332 "response to gamma radiation" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

UNIPROTKB|E2RM58 DCUN1D3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 183 (69.5 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 38/74 (51%), Positives = 50/74 (67%)

Query:     6 KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
             +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct:   184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query:    66 RDTWNMFLTFYDTI 79
             RDTWNMFL F   I
Sbjct:   240 RDTWNMFLNFTQVI 253

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0010332 "response to gamma radiation" evidence=IEA

GO:0010225 "response to UV-C" evidence=IEA

UNIPROTKB|Q8IWE4 DCUN1D3 "DCN1-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 38/74 (51%), Positives = 50/74 (67%)

Query:     6 KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
             +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct:   184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query:    66 RDTWNMFLTFYDTI 79
             RDTWNMFL F   I
Sbjct:   240 RDTWNMFLNFTQVI 253

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0010225 "response to UV-C" evidence=IDA

GO:0030308 "negative regulation of cell growth" evidence=IMP

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0010332 "response to gamma radiation" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1RPB5 DCUN1D3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 183 (69.5 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 38/74 (51%), Positives = 50/74 (67%)

Query:     6 KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
             +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct:   184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query:    66 RDTWNMFLTFYDTI 79
             RDTWNMFL F   I
Sbjct:   240 RDTWNMFLNFTQVI 253

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0010332 "response to gamma radiation" evidence=IEA

GO:0010225 "response to UV-C" evidence=IEA

UNIPROTKB|Q5R9G1 DCUN1D3 "DCN1-like protein 3" [Pongo abelii (taxid:9601)]

 Score = 183 (69.5 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 38/74 (51%), Positives = 50/74 (67%)

Query:     6 KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
             +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct:   184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query:    66 RDTWNMFLTFYDTI 79
             RDTWNMFL F   I
Sbjct:   240 RDTWNMFLNFTQVI 253

GO:0003674 "molecular_function" evidence=ND

GO:0010225 "response to UV-C" evidence=ISS

GO:0010332 "response to gamma radiation" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

MGI|MGI:2679003 Dcun1d3 "DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 183 (69.5 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 38/74 (51%), Positives = 50/74 (67%)

Query:     6 KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
             +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct:   184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query:    66 RDTWNMFLTFYDTI 79
             RDTWNMFL F   I
Sbjct:   240 RDTWNMFLNFTQVI 253

GO:0003674 "molecular_function" evidence=ND

GO:0010225 "response to UV-C" evidence=ISO

GO:0010332 "response to gamma radiation" evidence=ISO

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

RGD|1308893 Dcun1d3 "DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 183 (69.5 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 38/74 (51%), Positives = 50/74 (67%)

Query:     6 KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
             +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct:   184 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 239

Query:    66 RDTWNMFLTFYDTI 79
             RDTWNMFL F   I
Sbjct:   240 RDTWNMFLNFTQVI 253

GO:0003674 "molecular_function" evidence=ND

GO:0010225 "response to UV-C" evidence=ISO;ISS

GO:0010332 "response to gamma radiation" evidence=ISO;ISS

GO:0030308 "negative regulation of cell growth" evidence=ISO;ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISO;ISS

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=ISO;ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS

UNIPROTKB|E1BTK1 DCUN1D3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 38/74 (51%), Positives = 50/74 (67%)

Query:     6 KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
             +FTF+FGLDS  GQR L  ++AI LWKLVF+     ++  IL  WL+FL ++   ++GI 
Sbjct:   183 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NKPPILDQWLHFLVENPSGIKGIS 238

Query:    66 RDTWNMFLTFYDTI 79
             RDTWNMFL F   I
Sbjct:   239 RDTWNMFLNFTQVI 252

GO:0010225 "response to UV-C" evidence=IEA

GO:0010332 "response to gamma radiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040625-171 dcun1d2 "DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 122 (48.0 bits), Expect = 9.9e-08, P = 9.9e-08
 Identities = 30/76 (39%), Positives = 41/76 (53%)

Query:     4 FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRG 63
             F +FTF F    S GQ+ L ++MA+  W L+ S R        L  W  FL +H H  + 
Sbjct:   102 FYRFTFSFA--KSPGQKCLDLEMAVAYWNLILSGRFK-----FLGLWNTFLLEH-HK-KS 152

Query:    64 IPRDTWNMFLTFYDTI 79
             IP+DTWN+ L F + I
Sbjct:   153 IPKDTWNLLLDFGNMI 168

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K0V2	DCNL3_MOUSE	No assigned EC number	0.5135	0.8860	0.2302	yes	N/A
Q4V8B2	DCNL3_RAT	No assigned EC number	0.5135	0.8860	0.2302	yes	N/A
Q8IWE4	DCNL3_HUMAN	No assigned EC number	0.5135	0.8860	0.2302	yes	N/A
Q5E9V1	DCNL3_BOVIN	No assigned EC number	0.5135	0.8860	0.2302	yes	N/A
Q5R9G1	DCNL3_PONAB	No assigned EC number	0.5135	0.8860	0.2302	yes	N/A
A4IHK8	DCNL3_XENTR	No assigned EC number	0.5135	0.8860	0.2310	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	79
pfam03556	117	pfam03556, Cullin_binding, Cullin binding	1e-17

>gnl|CDD|217613 pfam03556, Cullin_binding, Cullin binding

 Score = 70.7 bits (174), Expect = 1e-17
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 6  KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
          +FTF F  +   GQ+ L ++ AI  WKL+F  R       +L  W+ FL +     + I 
Sbjct: 27 RFTFDFAREE--GQKSLDLETAIEYWKLLFGSRTFP----LLDQWIEFLEEKHK--KSIS 78

Query: 66 RDTWNMFLTFYDTI 79
          +DTWNM L F  TI
Sbjct: 79 KDTWNMLLEFSKTI 92

This domain binds to cullins and to Rbx-1, components of an E3 ubiquitin ligase complex for neddylation. Neddylation is the process by which the C-terminal glycine of the ubiquitin-like protein Nedd8 is covalently linked to lysine residues in a protein through an isopeptide bond. The structure of this domain is composed entirely of alpha helices. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
PF03556	117	Cullin_binding: Cullin binding; InterPro: IPR00517	99.95
KOG3077|consensus	260		99.9
KOG3077|consensus	260		85.25

>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes

Probab=99.95  E-value=7.8e-30  Score=166.66  Aligned_cols=70  Identities=43%  Similarity=0.881  Sum_probs=62.0

Q ss_pred             CceeeeeccccccccCCCccccHHHHHHHHhhhhcccccCCchhhHHHHHHHHhhcCCcccCCChhhhhHHHHHHhcC
Q psy12033          2 PFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI   79 (79)
Q Consensus         2 k~~Y~ftF~f~~~~~~gqK~L~~e~Ai~~W~lll~~~~~~~~~~~l~~W~~FL~~~~~~~k~IskD~W~~~l~F~~~i   79 (79)
                      |+||+|||+|+|+  +|||+|++|+||+||+|||+++.    +++++.|++||+++  ++|+||||+|+|+++|+++|
T Consensus        23 ~~~Y~f~F~~~~~--~~qr~l~~e~Ai~~W~llf~~~~----~~~l~~w~~Fl~~~--~~k~IskD~W~~~l~F~~~~   92 (117)
T PF03556_consen   23 KKFYRFTFDFARE--EGQRSLPLETAIAYWRLLFSGRF----FPLLDSWIEFLEEK--YKKAISKDTWNQFLDFFKTV   92 (117)
T ss_dssp             HHHHHHHHHHHS---TT-SSEEHHHHHHHHHHHTTTTS----SCCHHHHHHHHHHC--T-SEEEHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhCC--cccCCCCHHHHHHHHHHHcCCCC----cHHHHHHHHHHHHc--CCcCcChhHHHHHHHHHHhc
Confidence            5799999999999  99999999999999999998772    69999999999985  88999999999999999875

These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.

>KOG3077|consensus

Probab=99.90  E-value=1.9e-24  Score=157.10  Aligned_cols=69  Identities=39%  Similarity=0.777  Sum_probs=65.2

Q ss_pred             CceeeeeccccccccCCCccccHHHHHHHHhhhhcccccCCchhhHHHHHHHHhhcCCcccCCChhhhhHHHHHHhcC
Q psy12033          2 PFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI   79 (79)
Q Consensus         2 k~~Y~ftF~f~~~~~~gqK~L~~e~Ai~~W~lll~~~~~~~~~~~l~~W~~FL~~~~~~~k~IskD~W~~~l~F~~~i   79 (79)
                      |++|+|||+||+|  +|||+|++++||+||+|||+.+     +|+|++|++||+.+  +++.||||||+|+|+|+++|
T Consensus       156 k~iY~faf~fa~e--~~qk~Ld~~~ai~~w~ll~~~~-----~pll~~w~~FL~~~--~~~~~~KDtW~~~l~Fs~~i  224 (260)
T KOG3077|consen  156 KSIYRFAFNFAKE--PGQKSLDLETAISLWKLLFGQT-----PPLLDQWIQFLKDS--PNRAISKDTWNLLLDFSKTI  224 (260)
T ss_pred             hHHHHhhhhhccC--cCcCcCCHHHHHHHHHHHhCCC-----CchHHHHHHHHHhC--cCcccCcccHHHHHHHHHhc
Confidence            6899999999999  9999999999999999999777     79999999999996  88999999999999999865

>KOG3077|consensus

Probab=85.25  E-value=0.86  Score=33.75  Aligned_cols=66  Identities=15%  Similarity=0.089  Sum_probs=51.4

Q ss_pred             eeeeeccccccccCCCccccHHHHHHHHhhhhcccccCCchhhHHHHHHHHhhcCCcccCCChhhhhHHHHHHhcC
Q psy12033          4 FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI   79 (79)
Q Consensus         4 ~Y~ftF~f~~~~~~gqK~L~~e~Ai~~W~lll~~~~~~~~~~~l~~W~~FL~~~~~~~k~IskD~W~~~l~F~~~i   79 (79)
                      .|...+.|+.|  =|....++.++|--|+|- +++     ...+..|+-+-+-  ..-..+|-|+|.+.|+|.+++
T Consensus        83 ~~dgi~~fc~d--lg~~p~~i~~LvlAwkl~-A~~-----m~~Fsr~ef~~g~--~~l~~dS~d~lq~~l~~l~~~  148 (260)
T KOG3077|consen   83 GPDGIEKFCED--LGVEPEDISVLVLAWKLG-AAT-----MCEFSREEFLKGM--TALGCDSIDKLQQRLDFLRSV  148 (260)
T ss_pred             ChHHHHHHHHH--hCCCchhHHHHHHHHHhc-cch-----hhhhhHHHHHHHH--HHcCCCcHHHHHHHHHHHHHH
Confidence            35567788888  899999999999999999 766     5667666544322  245689999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
4gba_A	221	Dcnl Complex With N-terminally Acetylated Nedd8 E2		3e-15
4gao_A	200	Dcnl Complex With N-terminally Acetylated Nedd8 E2		5e-08
3tdu_A	200	N-Terminal Acetylation Acts As An Avidity Enhancer		8e-07
3kev_A	199	X-Ray Crystal Structure Of A Dcun1 Domain-Containin		4e-06

>pdb|4GBA|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide Length = 221

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Query: 6   KFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIP 65
           +FTF+FGLDS  GQR L  ++AI LWKLVF+     +   +L  WLNFL+++   ++GI 
Sbjct: 101 RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ----NNPPVLDQWLNFLTENPSGIKGIS 156
Query: 66  RDTWNMFLTFYDTI 79
           RDTWNMFL F   I
Sbjct: 157 RDTWNMFLNFTQVI 170

>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide Length = 200

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 4   FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRG 63
           F +FTF F    + GQ+ L ++MA+  WKLV S R        L  W  FL +H    R 
Sbjct: 98  FYQFTFTFA--KNPGQKGLDLEMAVAYWKLVLSGRFK-----FLDLWNTFLMEHHK--RS 148
Query: 64  IPRDTWNMFLTFYDTI 79
           IPRDTWN+ L F + I
Sbjct: 149 IPRDTWNLLLDFGNMI 164

>pdb|3TDU|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 200

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4   FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRG 63
           F +FTF F    + GQ+ L ++MAI  W LV + R        L  W  FL +H    R 
Sbjct: 98  FYQFTFNFA--KNPGQKGLDLEMAIAYWNLVLNGRFK-----FLDLWNKFLLEHHK--RS 148
Query: 64  IPRDTWNMFLTF 75
           IP+DTWN+ L F
Sbjct: 149 IPKDTWNLLLDF 160

>pdb|3KEV|A Chain A, X-Ray Crystal Structure Of A Dcun1 Domain-Containing Protein From Galdieria Sulfuraria Length = 199

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 4   FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRG 63
           F +F F++  + S  QR LP + A  LW ++   R S     +L +WL FL  +TH    
Sbjct: 100 FYQFVFQYSKEPS--QRSLPAETAXALWDVLLRGRFS-----LLDSWLEFLKNNTH---S 149
Query: 64  IPRDTWNMFLTF 75
           I RDTWN+   F
Sbjct: 150 ISRDTWNLLYDF 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
3kev_A	199	Galieria sulfuraria DCUN1 domain-containing prote;	6e-15
3tdu_A	200	DCN1-like protein 1; E2:E3, ligase-protein binding	4e-14
3bq3_A	270	Defective in cullin neddylation protein 1; ubiquit	1e-12

>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria} Length = 199

 Score = 65.0 bits (158), Expect = 6e-15
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 4   FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRG 63
           F +F F++  +    QR LP + A+ LW ++   R S     +L +WL FL  +T     
Sbjct: 100 FYQFVFQYSKEP--SQRSLPAETAMALWDVLLRGRFS-----LLDSWLEFLKNNT---HS 149

Query: 64  IPRDTWNMFLTFYDTI 79
           I RDTWN+   F    
Sbjct: 150 ISRDTWNLLYDFSQLS 165

>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A Length = 200

 Score = 62.7 bits (152), Expect = 4e-14
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 4   FSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRG 63
           F +FTF F  +   GQ+ L ++MAI  W LV + R        L  W  FL +H    R 
Sbjct: 98  FYQFTFNFAKNP--GQKGLDLEMAIAYWNLVLNGRFK-----FLDLWNKFLLEHHK--RS 148

Query: 64  IPRDTWNMFLTFYDTI 79
           IP+DTWN+ L F   I
Sbjct: 149 IPKDTWNLLLDFSTMI 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
3tdu_A	200	DCN1-like protein 1; E2:E3, ligase-protein binding	99.96
4gba_A	221	DCN1-like protein 3; E3 ligase, ligase-peptide com	99.96
3kev_A	199	Galieria sulfuraria DCUN1 domain-containing prote;	99.95
3bq3_A	270	Defective in cullin neddylation protein 1; ubiquit	99.95

>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*

Probab=99.96  E-value=3.5e-30  Score=180.20  Aligned_cols=69  Identities=43%  Similarity=0.768  Sum_probs=65.6

Q ss_pred             CceeeeeccccccccCCCccccHHHHHHHHhhhhcccccCCchhhHHHHHHHHhhcCCcccCCChhhhhHHHHHHhcC
Q psy12033          2 PFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI   79 (79)
Q Consensus         2 k~~Y~ftF~f~~~~~~gqK~L~~e~Ai~~W~lll~~~~~~~~~~~l~~W~~FL~~~~~~~k~IskD~W~~~l~F~~~i   79 (79)
                      |+||+|||+|||+  +|||+|++|+||+||+|||+++     +++|++|++||+++  ++|+||||||+|+|+|+++|
T Consensus        96 k~~Y~ftF~~~r~--~gqk~L~~e~Ai~~W~lll~~~-----~~~l~~W~~FL~~~--~~k~IskD~W~~~l~F~~~i  164 (200)
T 3tdu_A           96 KDFYQFTFNFAKN--PGQKGLDLEMAIAYWNLVLNGR-----FKFLDLWNKFLLEH--HKRSIPKDTWNLLLDFSTMI  164 (200)
T ss_dssp             HHHHHHHHHHHSC--TTCSSEEHHHHHHHHHHHSTTS-----CTTHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcC--cCcCcCCHHHHHHHHHHHcCCC-----chHHHHHHHHHHhc--CCcCcCHhHHHHHHHHHHHh
Confidence            5799999999999  9999999999999999999998     79999999999985  78999999999999999875

>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}

Probab=99.96  E-value=4.6e-30  Score=181.97  Aligned_cols=73  Identities=52%  Similarity=0.943  Sum_probs=66.5

Q ss_pred             CceeeeeccccccccCCCccccHHHHHHHHhhhhcc-cccCCchhhHHHHHHHHhhcCCcccCCChhhhhHHHHHHhcC
Q psy12033          2 PFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSI-RVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI   79 (79)
Q Consensus         2 k~~Y~ftF~f~~~~~~gqK~L~~e~Ai~~W~lll~~-~~~~~~~~~l~~W~~FL~~~~~~~k~IskD~W~~~l~F~~~i   79 (79)
                      |+||+|||+|||++++|||+|++|+||+||+|||++ +     +|+|++|++||+++++.+|+||||||+|+|+|+++|
T Consensus        97 k~~Y~ftF~~~~~~e~gqk~L~le~Ai~~W~Lll~~~~-----~~~l~~W~~FL~~~~~~~k~IskDtW~~~l~F~~~i  170 (221)
T 4gba_A           97 KDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNN-----PPVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVI  170 (221)
T ss_dssp             HHHHHHHHHHHSCTTTTCSSEEHHHHHHHHHHHTTTCC-----CTTHHHHHHHHHHCTTCCCEECHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCCccccCCCHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHh
Confidence            689999999999866899999999999999999998 5     799999999999852248999999999999999875

>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}

Probab=99.95  E-value=1.2e-29  Score=177.46  Aligned_cols=68  Identities=34%  Similarity=0.719  Sum_probs=63.9

Q ss_pred             CceeeeeccccccccCCCccccHHHHHHHHhhhhcccccCCchhhHHHHHHHHhhcCCcccCCChhhhhHHHHHHhcC
Q psy12033          2 PFFSKFTFRFGLDSSCGQRILPIDMAIILWKLVFSIRVSCDESFILTAWLNFLSQHTHVVRGIPRDTWNMFLTFYDTI   79 (79)
Q Consensus         2 k~~Y~ftF~f~~~~~~gqK~L~~e~Ai~~W~lll~~~~~~~~~~~l~~W~~FL~~~~~~~k~IskD~W~~~l~F~~~i   79 (79)
                      |+||+|||+|||+  +|||+|++|+||+||+|||+++     +|+|+.|++||+++  + |+||||||+|+|+|+++|
T Consensus        98 k~~Y~ftF~~~re--~gqk~L~~e~Ai~~W~lll~~~-----~~~l~~W~~FL~~~--~-k~IskD~W~~~l~F~~~i  165 (199)
T 3kev_A           98 RAFYQFVFQYSKE--PSQRSLPAETAMALWDVLLRGR-----FSLLDSWLEFLKNN--T-HSISRDTWNLLYDFSQLS  165 (199)
T ss_dssp             HHHHHHHHHHHSC--TTCSSBCHHHHHHHHHHHHTTT-----CTTHHHHHHHGGGC--C-SCBCHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHcC--cCcCCCCHHHHHHHHHHHhCCc-----cHHHHHHHHHHHhc--C-CCcCHHHHHHHHHHHHHh
Confidence            5799999999999  9999999999999999999988     79999999999985  5 999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d1b0na1	35	SinR repressor dimerisation domain {Bacillus subti	83.31

>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: Dimerisation interlock
superfamily: SinR repressor dimerisation domain-like
family: SinR repressor dimerisation domain-like
domain: SinR repressor dimerisation domain
species: Bacillus subtilis [TaxId: 1423]

Probab=83.31  E-value=0.54  Score=22.75  Aligned_cols=27  Identities=15%  Similarity=0.586  Sum_probs=21.0

Q ss_pred             HHHHHHhhcCCcccCCChhhhhHHHHHHh
Q psy12033         49 AWLNFLSQHTHVVRGIPRDTWNMFLTFYD   77 (79)
Q Consensus        49 ~W~~FL~~~~~~~k~IskD~W~~~l~F~~   77 (79)
                      .|..-+++.  -.-+|||++-.-||+|.+
T Consensus         4 eW~~lVkeA--M~SGvSK~QFrEflef~k   30 (35)
T d1b0na1           4 EWEKLVRDA--MTSGVSKKQFREFLDYQK   30 (35)
T ss_dssp             HHHHHHHHH--HHSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HHccCCHHHHHHHHHHHH
Confidence            566666653  456899999999999974