Psyllid ID: psy12044

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------
Protein Sequence
MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKKKKLKKKDESDKNVNGSNENVVKNLRESPKYTSVNATSATCMDKVNGGYIIADGHNDMMLYATDSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRRAQGGEDTQDTQDKASEAASVQYSDSGSQCQEWGNVCYNRMQPMQHIVLNNVYNQPADIHLTPEKFMDRDGYPVDFGLPKVPTHFPALVPATAYYRTLPHRRHTAANPNNRYSREAEFLSRSSQPASYEHYAPADVRYNIEGYPSASPTPYSSAPRVTFTEPLHILQGQPMQSNPPTETTTKNEQTWTESSADEQPSTSNPEKSNENKSEGFQAKRHMIDSLLKNRDVKVGSHLHPHRGLMLPPVLTESPDEGYEGEGPETTEM
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccccccEEEEcccccEEEccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEccccccccccccccccccccccEEEccccccccccHHHHccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEEccccEEEEEEcccccccccccccccccEEEccccEEEEEcEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHccccccEEEEEccccEEEEEccccccEcccccccccEEEEccccccccccHHHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHccccccEEEEcccccccccHHHHHHHHHHHccccccccccccccHHHcccEcccccHHHcccccccccccccEEEEcccEEEEEEEEEcccccEEEEEEcccEEcccccccccccEEEEEccccEEcccEEEEEEEccccccEEEEEEEcccccEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEcccccccccccccccccccccccccEEEccccccEEEEEcccccEcccccccccccccHHHHHcccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccHHHHHHHHHccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHccHHHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MMYWIFLIATIIKIVSacptscickwkggkqtVECVNKSLITVvegmdpntqvldytgnnlktLHNEKFQKMGLVNLQKIYLSrcrisvidskafrgltnlvdldfshnvlqtvpsdtfpdypslmkltlsgnpikqiktgafqplSYLVTLELSKCGIEVIEDAAFVGLDslewlkldnnkittisgsnilptglhgidlhhnpwtcDCLLIGLRRWlestktpmaidpicsvpprlssvtikqlsidelacepqitpstfYLEIqegknvsllckvsaipeakitwlfdgvpiqnesmsaseshavysteegteikKSELLIYnsniddngTFVCVAenqagstssnyTIRIVLKeenvevvtVFPLEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKKKklkkkdesdknvngsneNVVKNLrespkytsvnatsatcmdkvnggyiiadghndmmLYATDSGILvatnnmntypsysisyqieqnpdlvndaesvdkdrraqggedtqdtqdKASEAasvqysdsgsqcqeWGNVcynrmqpmqHIVLNnvynqpadihltpekfmdrdgypvdfglpkvpthfpalvpatayyrtlphrrhtaanpnnrysreaeflsrssqpasyehyapadvryniegypsasptpyssaprvtfteplhilqgqpmqsnpptetttkneqtwtessadeqpstsnpeksnenksegFQAKRHMIDSLlknrdvkvgshlhphrglmlppvltespdegyegegpettem
Flexible Loop (DISEMBL)
MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVvegmdpntQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPmaidpicsvppRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENqagstssnytirIVLKEENVEVVTVFPLEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKKkklkkkdesdknvngsnenvvknlrespkytsvnatsatcmdKVNGGYIIADGHNDMMLYATDSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRRAqggedtqdtqdkaSEAAsvqysdsgsQCQEWGNVCYNRMQPMQHIVLNNVYNQPADIHLTPEKFMDRDGYPVDFGLPKVPTHFPALVPATAYyrtlphrrhtaanpnnrySREAEFLSRSSQPASYEHYAPADVRYNIEGYPSASPTPYSSAPRVTFTEPLHIlqgqpmqsnpptETTTKNEQTWtessadeqpstsnpeksnenksegFQAKRHMIDSLLKNRDVKVGSHlhphrglmlppvltespdegyegegpettem
Low Complexity Region (SEG)
MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGiisvcslvlifllvlcflcfrrkkkklkkkDESDKNVNGSNENVVKNLRESPKYTSVNATSATCMDKVNGGYIIADGHNDMMLYATDSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRRAQGGEDTQDTQDKASEAASVQYSDSGSQCQEWGNVCYNRMQPMQHIVLNNVYNQPADIHLTPEKFMDRDGYPVDFGLPKVPTHFPALVPATAYYRTLPHRRHTAANPNNRYSREAEFLSRSSQPASYEHYAPADVRYNIEGypsasptpyssapRVTFTEPLHILQGQPMQSNPPtetttkneqtwteSSADEQPSTSNPEKSNENKSEGFQAKRHMIDSLLKNRDVKVGSHLHPHRGLMLPPVLTespdegyegegpetteM
Disordered region (IsUnstruct)
*MYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPI***********************KSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGIISVCSLVLIFLLVLCFLCF*************************************NATSATCMDKVNGGYIIADGHNDMMLYATDSGILVATNNMNTYPSYSISYQI**********************************************CQEWGNVCYNRMQPMQHIVLNNVYNQPADIHLTPEKFMDRDGYPVDFGLPKVPTHFPALVPATAYYRTLP*************************************RY******************************************************************************************************************************
Disordered Region (DISOPRED)
MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPS****EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQ*****************GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE*******VFPLEYVLIVSGIISVCSLVLIFLLVLCFLCF**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNES***************TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKK**************GSNENVVKNLRESPKYTSVNATSATCMDKVNGGYIIADGHNDMMLYATDSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDK******************************QCQEWGNVCYNRMQPMQHIVLNNVYNQPADIHLTPEKFMDRDGYPVDFGLPKVPTHFPALVPATAYYRTLPHRRHTAANPNNRYS**************YEHYAPADVRYNIEGYPSASPTPYSSAPRVTFTEPLHILQGQ******************************************FQAKRHMIDSLLKNRDVKVGSHLHPHRGLMLPPVLTESP**************
Disordered Region (DISPRO)
MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKKK*****************************************KVNGGYIIADGHNDMMLYATDSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESV****************DKASEAASVQYSDSGSQCQEWGNVCYNRMQPMQHIVLNNVYNQPADIHLTPEKFMDRDGYPVDFGLPKVPTHFPALVPATAYYRTLPHRRHTAANPNNRYSREAEFLSRSSQPASYEHYAPADVRYNIEGYPSASP**********FTEPLHILQGQPMQSNPPT******EQT*TE****EQPS*******************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKKKKLKKKDESDKNVNGSNENVVKNLRESPKYTSVNATSATCMDKVNGGYIIADGHNDMMLYATDSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRRAQGGEDTQDTQDKASEAASVQYSDSGSQCQEWGNVCYNRMQPMQHIVLNNVYNQPADIHLTPEKFMDRDGYPVDFGLPKVPTHFPALVPATAYYRTLPHRRHTAANPNNRYSREAEFLSRSSQPASYEHYAPADVRYNIEGYPSASPTPYSSAPRVTFTEPLHILQGQPMQSNPPTETTTKNEQTWTESSADEQPSTSNPEKSNENKSEGFQAKRHMIDSLLKNRDVKVGSHLHPHRGLMLPPVLTESPDEGYEGEGPETTEM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	767	2.2.26 [Sep-21-2011]
Q9HCJ2	640	Leucine-rich repeat-conta	yes	N/A	0.443	0.531	0.248	5e-25
Q8C031	640	Leucine-rich repeat-conta	yes	N/A	0.443	0.531	0.248	5e-25
Q96NI6	719	Leucine-rich repeat and f	no	N/A	0.438	0.467	0.260	1e-24
O75093	1534	Slit homolog 1 protein OS	no	N/A	0.305	0.152	0.336	2e-24
O88279	1531	Slit homolog 1 protein OS	no	N/A	0.305	0.152	0.327	2e-24
Q50LG9	513	Leucine-rich repeat-conta	no	N/A	0.430	0.643	0.269	3e-24
Q80TR4	1531	Slit homolog 1 protein OS	no	N/A	0.305	0.152	0.327	4e-24
Q8BXA0	719	Leucine-rich repeat and f	no	N/A	0.438	0.467	0.255	6e-24
D4A1J9	719	Leucine-rich repeat and f	no	N/A	0.438	0.467	0.255	6e-24
O88280	1523	Slit homolog 3 protein OS	no	N/A	0.301	0.151	0.331	8e-24

>sp|Q9HCJ2|LRC4C_HUMAN Leucine-rich repeat-containing protein 4C OS=Homo sapiens GN=LRRC4C PE=1 SV=1

 Score =  117 bits (292), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 169/431 (39%), Gaps = 91/431 (21%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM----- 72
           CP+ C C  +  K  V CV K+L  V +G+  NT++L+   N ++ +    F+ +     
Sbjct: 47  CPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEI 104

Query: 73  -----------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP 115
                            GL NL  + L   R++ I + AF  L+ L +L   +N ++++P
Sbjct: 105 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 164

Query: 116 SDTFPDYPSLMKLTL--------------------------------------------- 130
           S  F   PSL +L L                                             
Sbjct: 165 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 224

Query: 131 --SGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188
             SGN +  I+ G+FQ L +L  L + +  I+VIE  AF  L SL  + L +N +T +  
Sbjct: 225 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 284

Query: 189 SNILPT-GLHGIDLHHNPWTCDCLLIGLRRWLESTK-TPMAIDPICSVPPRLSSVTIKQL 246
               P   L  I LHHNPW C+C ++ L  W++    +  A    C+ PP L    I +L
Sbjct: 285 DLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGEL 344

Query: 247 SIDELAC-EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASES 305
             +   C  P I      L + EG    L C+ S      ++W+     +         +
Sbjct: 345 DQNYFTCYAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVM--------T 395

Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVT 365
           H  Y       +    L   N  + D G + C+  N  G+T+++ T+       NV   T
Sbjct: 396 HGAYKVRIAV-LSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL-------NVTAAT 447

Query: 366 VFPLEYVLIVS 376
             P  Y   V+
Sbjct: 448 TTPFSYFSTVT 458

May promote neurite outgrowth of developing thalamic neurons.
Homo sapiens (taxid: 9606)

>sp|Q8C031|LRC4C_MOUSE Leucine-rich repeat-containing protein 4C OS=Mus musculus GN=Lrrc4c PE=1 SV=2

 Score =  116 bits (291), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 168/431 (38%), Gaps = 91/431 (21%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM----- 72
           CP+ C C  +  K  V CV K+L  V +G+  NT++L+   N ++ +    F+ +     
Sbjct: 47  CPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEI 104

Query: 73  -----------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP 115
                            GL NL  + L   R++ I + AF  L+ L +L   +N ++++P
Sbjct: 105 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 164

Query: 116 SDTFPDYPSLMKLTL--------------------------------------------- 130
           S  F   PSL +L L                                             
Sbjct: 165 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 224

Query: 131 --SGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188
             SGN +  I+ G+FQ L +L  L + +  I+VIE  AF  L SL  + L +N +T +  
Sbjct: 225 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 284

Query: 189 SNILPT-GLHGIDLHHNPWTCDCLLIGLRRWLESTK-TPMAIDPICSVPPRLSSVTIKQL 246
               P   L  I LHHNPW C+C ++ L  W+     +  A    C+ PP L    I +L
Sbjct: 285 DLFTPLHHLERIHLHHNPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPNLKGRYIGEL 344

Query: 247 SIDELAC-EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASES 305
             +   C  P I      L + EG    L C+ S      ++W+     +         +
Sbjct: 345 DQNYFTCYAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVM--------T 395

Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVT 365
           H  Y       +    L   N  + D G + C+  N  G+T+++ T+       NV   T
Sbjct: 396 HGAYKVRIAV-LSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL-------NVTAAT 447

Query: 366 VFPLEYVLIVS 376
             P  Y   V+
Sbjct: 448 TTPFSYFSTVT 458

May promote neurite outgrowth of developing thalamic neurons.

Mus musculus (taxid: 10090)

>sp|Q96NI6|LRFN5_HUMAN Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Homo sapiens GN=LRFN5 PE=1 SV=2

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 161/391 (41%), Gaps = 55/391 (14%)

Query: 1   MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNN 60
           +++++FLI   +K    CP  C+C+         C  K L+ V   +D  T  L    N 
Sbjct: 4   ILFYLFLIGIAVK-AQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNF 62

Query: 61  LKTLHNEKFQKM----------------------GLVNLQKIYLSRCRISVIDSKAFRGL 98
           +  +  + F  M                       L NL+ ++L+  R++ I +  F GL
Sbjct: 63  VTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGL 122

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
           +NL  L  ++N L  + S  F D  +L +L LS N ++ I   A + +  L TL L    
Sbjct: 123 SNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNM 182

Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKI------------TTISGSNILPTGLHGIDLHHNPW 206
           I+ I    F  L  +  L + +NK+              ++ S I+      +    NP 
Sbjct: 183 IDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPL 242

Query: 207 TCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE-PQITPSTFYLE 265
            C+C L+ LRR              C+ PP L+      +  +E  CE P IT  T  + 
Sbjct: 243 HCNCELLWLRRLSREDDLET-----CASPPLLTGRYFWSIPEEEFLCEPPLITRHTHEMR 297

Query: 266 IQEGKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
           + EG+  +L CK    PE  I W+  +G  I N + S      VY  + GT      L I
Sbjct: 298 VLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRS-----LVY--DNGT------LDI 344

Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
             + + D G F C+A N AG  +    + I+
Sbjct: 345 LITTVKDTGAFTCIASNPAGEATQIVDLHII 375

Cell adhesion molecule that mediates homophilic cell-cell adhesion in a Ca(2+)-independent manner. Promotes neurite outgrowth in hippocampal neurons.

Homo sapiens (taxid: 9606)

>sp|O75093|SLIT1_HUMAN Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 116/244 (47%), Gaps = 10/244 (4%)

Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
            SACP  C C       TV+C    L  + + +  NT+ L+  GNN+  +H   F   GL
Sbjct: 31  ASACPALCTCTGT----TVDCHGTGLQAIPKNIPRNTERLELNGNNITRIHKNDF--AGL 84

Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
             L+ + L   +I  ++  AF  +  L  L  + N L  +P   F +  +L +L LS N 
Sbjct: 85  KQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLPELLFQNNQALSRLDLSENA 144

Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI--SGSNIL 192
           I+ I   AF+  + L  L+L K  I  IE+ AF  L  LE L L+NN ITTI  S  N +
Sbjct: 145 IQAIPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITTIPVSSFNHM 204

Query: 193 PTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELA 252
           P  L    LH N   CDC L  L +WL    T + +   CS P  L  + + ++   E +
Sbjct: 205 PK-LRTFRLHSNHLFCDCHLAWLSQWLRQRPT-IGLFTQCSGPASLRGLNVAEVQKSEFS 262

Query: 253 CEPQ 256
           C  Q
Sbjct: 263 CSGQ 266

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Homo sapiens (taxid: 9606)

>sp|O88279|SLIT1_RAT Slit homolog 1 protein OS=Rattus norvegicus GN=Slit1 PE=1 SV=1

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 117/244 (47%), Gaps = 10/244 (4%)

Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
            +ACP  C C       TV+C    L  + + +  NT+ L+  GNN+  +H   F   GL
Sbjct: 31  ATACPALCTCTGT----TVDCHGTGLQAIPKNIPRNTERLELNGNNITRIHKNDF--AGL 84

Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
             L+ + L   +I  ++  AF  +  L  L  + N LQ +P   F +  +L +L LS N 
Sbjct: 85  KQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLQVLPELLFQNNQALSRLDLSENS 144

Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI--SGSNIL 192
           ++ +   AF+  + L  L+L K  I  IE+ AF  L  LE L L+NN ITTI  S  N +
Sbjct: 145 LQAVPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITTIPVSSFNHM 204

Query: 193 PTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELA 252
           P  L    LH N   CDC L  L +WL    T + +   CS P  L  + + ++   E +
Sbjct: 205 PK-LRTFRLHSNHLFCDCHLAWLSQWLRQRPT-IGLFTQCSGPASLRGLNVAEVQKSEFS 262

Query: 253 CEPQ 256
           C  Q
Sbjct: 263 CSGQ 266

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Rattus norvegicus (taxid: 10116)

>sp|Q50LG9|LRC24_HUMAN Leucine-rich repeat-containing protein 24 OS=Homo sapiens GN=LRRC24 PE=2 SV=2

 Score =  114 bits (285), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 149/349 (42%), Gaps = 19/349 (5%)

Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
            CP +C C       TVEC    L  V  G+ P TQ L    NN+  L         L  
Sbjct: 22  GCPAACRCY----SATVECGALRLRVVPLGIPPGTQTLFLQDNNIARLEPGALAP--LAA 75

Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
           L+++YL    +  +++ AFR    L++L  + N L+ + S  F     L  L L+GN + 
Sbjct: 76  LRRLYLHNNSLRALEAGAFRAQPRLLELALTSNRLRGLRSGAFVGLAQLRVLYLAGNQLA 135

Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TG 195
           ++    F  L  L  L L +  IE++ED A  GL SL  L L  N++ TIS   + P   
Sbjct: 136 RLLDFTFLHLPRLQELHLQENSIELLEDQALAGLSSLALLDLSRNQLGTISREALQPLAS 195

Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDP----ICSVPPRLSSVTIKQLSIDEL 251
           L  + L  NPW CDC L  L  W++     +        +C+ PPRL+  ++  +S   L
Sbjct: 196 LQVLRLTENPWRCDCALHWLGAWIKEGGQRLLTSRDRKIMCAEPPRLALQSLLDVSHSSL 255

Query: 252 AC-EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESH---- 306
            C  P +      L    G+++ + C+ S  P+  +TW    VP   E    +++     
Sbjct: 256 ICIPPSVHVQPLELTANLGEDLRVACQASGYPQPLVTW--RKVPQPREGRPRAQAQLEGG 313

Query: 307 -AVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                    ++     L + N  +   G + C A N  G+    + + +
Sbjct: 314 LLGLGGHSASDTGSGMLFLSNITLAHAGKYECEASNAGGAARVPFRLLV 362

Homo sapiens (taxid: 9606)

>sp|Q80TR4|SLIT1_MOUSE Slit homolog 1 protein OS=Mus musculus GN=Slit1 PE=1 SV=2

 Score =  114 bits (284), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 117/244 (47%), Gaps = 10/244 (4%)

Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
            +ACP  C C       TV+C    L  + + +  NT+ L+  GNN+  +H   F   GL
Sbjct: 31  ATACPALCTCTGT----TVDCHGTGLQAIPKNIPRNTERLELNGNNITRIHKNDF--AGL 84

Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
             L+ + L   +I  ++  AF  +  L  L  + N LQ +P   F +  +L +L LS N 
Sbjct: 85  KQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLQVLPELLFQNNQALSRLDLSENF 144

Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI--SGSNIL 192
           ++ +   AF+  + L  L+L K  I  IE+ AF  L  LE L L+NN ITTI  S  N +
Sbjct: 145 LQAVPRKAFRGATDLKNLQLDKNRISCIEEGAFRALRGLEVLTLNNNNITTIPVSSFNHM 204

Query: 193 PTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELA 252
           P  L    LH N   CDC L  L +WL    T + +   CS P  L  + + ++   E +
Sbjct: 205 PK-LRTFRLHSNHLFCDCHLAWLSQWLRQRPT-IGLFTQCSGPASLRGLNVAEVQKGEFS 262

Query: 253 CEPQ 256
           C  Q
Sbjct: 263 CSGQ 266

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Mus musculus (taxid: 10090)

>sp|Q8BXA0|LRFN5_MOUSE Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Mus musculus GN=Lrfn5 PE=1 SV=1

 Score =  113 bits (283), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 159/391 (40%), Gaps = 55/391 (14%)

Query: 1   MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNN 60
            ++++FLI   ++    CP  C+C+         C  K L+ V   +D  T  L    N 
Sbjct: 4   FLFYLFLIGIAVR-AQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNF 62

Query: 61  LKTLHNEKFQKM----------------------GLVNLQKIYLSRCRISVIDSKAFRGL 98
           +  +  + F  M                       L NL+ ++L+  R++ I +  F GL
Sbjct: 63  VTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGL 122

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
           +NL  L  ++N L  + S  F D  +L +L LS N ++ I   A + +  L TL L    
Sbjct: 123 SNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNM 182

Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKI------------TTISGSNILPTGLHGIDLHHNPW 206
           I+ I    F  L  +  L + +NK+              ++ S I+      +    NP 
Sbjct: 183 IDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPL 242

Query: 207 TCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE-PQITPSTFYLE 265
            C+C L+ LRR              C+ P  L+      +  +E  CE P IT  T  + 
Sbjct: 243 HCNCELLWLRRLSREDDL-----ETCASPALLTGRYFWSIPEEEFLCEPPLITRHTHEMR 297

Query: 266 IQEGKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
           + EG+  +L CK    PE  I W+  +G  I N + S      VY  + GT      L I
Sbjct: 298 VLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRS-----LVY--DNGT------LDI 344

Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
             + + D G F C+A N AG  +    + I+
Sbjct: 345 LITTVKDTGAFTCIASNPAGEATQTVDLHII 375

Cell adhesion molecule that mediates homophilic cell-cell adhesion in a Ca(2+)-independent manner. Promotes neurite outgrowth in hippocampal neurons.

Mus musculus (taxid: 10090)

>sp|D4A1J9|LRFN5_RAT Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Rattus norvegicus GN=Lrfn5 PE=1 SV=1

 Score =  113 bits (282), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 159/391 (40%), Gaps = 55/391 (14%)

Query: 1   MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNN 60
            ++++FLI   ++    CP  C+C+         C  K L+ V   +D  T  L    N 
Sbjct: 4   FLFYLFLIGIAVR-AQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNF 62

Query: 61  LKTLHNEKFQKM----------------------GLVNLQKIYLSRCRISVIDSKAFRGL 98
           +  +  + F  M                       L NL+ ++L+  R++ I +  F GL
Sbjct: 63  VTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGL 122

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
           +NL  L  ++N L  + S  F D  +L +L LS N ++ I   A + +  L TL L    
Sbjct: 123 SNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNM 182

Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKI------------TTISGSNILPTGLHGIDLHHNPW 206
           I+ I    F  L  +  L + +NK+              ++ S I+      +    NP 
Sbjct: 183 IDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPL 242

Query: 207 TCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE-PQITPSTFYLE 265
            C+C L+ LRR              C+ P  L+      +  +E  CE P IT  T  + 
Sbjct: 243 HCNCELLWLRRLSREDDL-----ETCASPALLTGRYFWSIPEEEFLCEPPLITRHTHEMR 297

Query: 266 IQEGKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
           + EG+  +L CK    PE  I W+  +G  I N + S      VY  + GT      L I
Sbjct: 298 VLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRS-----LVY--DNGT------LDI 344

Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
             + + D G F C+A N AG  +    + I+
Sbjct: 345 LITTVKDTGAFTCIASNPAGEATQTMDLHII 375

Cell adhesion molecule that mediates homophilic cell-cell adhesion in a Ca(2+)-independent manner. Promotes neurite outgrowth in hippocampal neurons.

Rattus norvegicus (taxid: 10116)

>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1

 Score =  112 bits (281), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 115/241 (47%), Gaps = 10/241 (4%)

Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
            +ACPT C C       +V+C    L  V  G+  N + LD   NN+  +    F   GL
Sbjct: 31  AAACPTKCTCS----AASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDF--TGL 84

Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
            NL+ ++L   ++SVI+  AF+ L  L  L  + N LQ +P   F   P L +L LS N 
Sbjct: 85  KNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQ 144

Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI--SGSNIL 192
           I+ I   AF+ ++ +  L+L    I  IED AF  L  LE L L+NN I+ I  +  N +
Sbjct: 145 IQGIPRKAFRGVTGVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHM 204

Query: 193 PTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELA 252
           P  +  + LH N   CDC L  L  WL   +T +    +C  P  L   ++  +   E  
Sbjct: 205 PK-IRTLRLHSNHLYCDCHLAWLSDWLRQRRT-IGQFTLCMAPVHLRGFSVADVQKKEYV 262

Query: 253 C 253
           C
Sbjct: 263 C 263

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	767
242013643	752	Amphoterin-induced protein 2 precursor,	0.925	0.944	0.423	1e-152
157125045	811	kek1 [Aedes aegypti] gi|108882755|gb|EAT	0.853	0.807	0.427	1e-143
170063709	829	kek1 [Culex quinquefasciatus] gi|1678812	0.847	0.784	0.408	1e-136
91081769	637	PREDICTED: similar to kek1 [Tribolium ca	0.720	0.868	0.421	1e-133
312373578	1059	hypothetical protein AND_17259 [Anophele	0.830	0.601	0.374	1e-131
195437746	909	GK24359 [Drosophila willistoni] gi|19416	0.794	0.669	0.378	1e-128
198473958	901	GA18568 [Drosophila pseudoobscura pseudo	0.827	0.704	0.377	1e-126
195340171	894	GM19128 [Drosophila sechellia] gi|194130	0.833	0.714	0.383	1e-125
77455272	880	CG4977 [Drosophila yakuba]	0.814	0.710	0.382	1e-124
194861653	900	GG23727 [Drosophila erecta] gi|190661693	0.834	0.711	0.378	1e-124

>gi|242013643|ref|XP_002427512.1| Amphoterin-induced protein 2 precursor, putative [Pediculus humanus corporis] gi|212511907|gb|EEB14774.1| Amphoterin-induced protein 2 precursor, putative [Pediculus humanus corporis]

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 324/765 (42%), Positives = 452/765 (59%), Gaps = 55/765 (7%)

Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
           V +CP+ C CKWKGGKQTVEC +K LIT+  G+D  TQVL+++GNNLK L  E+F++MGL
Sbjct: 31  VVSCPSDCACKWKGGKQTVECPDKGLITIPNGIDAGTQVLEFSGNNLKLLPRERFERMGL 90

Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
           +NLQ+IYLSRC+I  ID +AFRGLTNLV+LD S N L TVP++TF DYPSLM+L +SGNP
Sbjct: 91  LNLQRIYLSRCKILQIDDRAFRGLTNLVELDLSLNFLNTVPTETFVDYPSLMRLIVSGNP 150

Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
           I+ ++T +F+PLS+L +LELS C IE IED  F+GLD+LEWLKLD N++  I G NILP 
Sbjct: 151 IRALQTASFRPLSFLTSLELSNCQIESIEDGTFLGLDNLEWLKLDGNRLNFIRGENILPD 210

Query: 195 GLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE 254
            +HG+ L  NPW CDC L+ +  WL + K   + +P C+ P RL    I+ L + +LAC 
Sbjct: 211 AVHGVALDRNPWQCDCRLLEVHNWLLNYKIIHSTEPKCAGPERLVGEPIRNLEVGDLACL 270

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P ++P+T YLEI EGKN+SLLC+VSAIPEA ++W F G  +QN++  A   H  Y  EEG
Sbjct: 271 PDVSPTTLYLEIAEGKNISLLCRVSAIPEASVSWWFQGRILQNDTTLAPGFHFYYFVEEG 330

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLI 374
            E K+SEL I+N+N DDNGTFVC AEN AG + SNYTIRI++KEE V  + VF  EY++ 
Sbjct: 331 REEKRSELFIFNTNPDDNGTFVCAAENPAGKSLSNYTIRIIVKEEPVVGLIVFSREYLIA 390

Query: 375 VSGIISVCSLVLIFLLVLCFLCFRRKKKKLKKKDESDKNVNGSNENVVKN-LRESPKYTS 433
           +  +++V   +++ +L    +  RR+++K +KK+ S +  + + + +++N +  SP  T+
Sbjct: 391 IFSVLTVFCFIILVILAFLLIRCRRQRRKKRKKERSKEMASQNQKPLLRNEIITSPTETT 450

Query: 434 VNATSATCMD-KVNGGYIIAD--GHNDMMLYATDSGILVATNNMNTYPSYSISYQIEQNP 490
             +     M  + N    I +  G N+    +  SG+ +  N           +  +QNP
Sbjct: 451 GKSNGTVVMSGQSNVSVFIPNIGGSNENESQSITSGVYIPQN----------VFLTDQNP 500

Query: 491 DLVNDAESVDKDRRAQGGEDTQDTQDKASEAASVQYSDSGSQCQEWGNVCYNRMQPMQHI 550
           DL+N  ES     + Q GE   D     S  +S  Y+D+    Q  GN     +   QH 
Sbjct: 501 DLINGTESAGN--KFQIGESQIDGGQNLSLMSS-PYADASRYIQTRGNC---DLFIKQHY 554

Query: 551 VLNNVYNQPADIHLTPEKFMDRDGYPVDFGLPKVP--THFPALVPATAYYRTLPHRR--- 605
                    ADIHL+P +F D DGYPVD+GLPKVP     P       YYRTLP++R   
Sbjct: 555 T--------ADIHLSPGRFFDGDGYPVDYGLPKVPLMVSLPTPDQQINYYRTLPNKRSAK 606

Query: 606 HTAANPNNRY-SREAEFLSRSSQPASYEHYAPADVRYNIEGYPSASPTPYSSAPRVTFTE 664
            +AANP+ ++ SREAEFLS SS    Y+ Y P++VRY +EGYP          P  +   
Sbjct: 607 FSAANPHLKFASREAEFLS-SSHSNPYD-YNPSNVRYTLEGYPCHQQQQQPQPPPPSNYS 664

Query: 665 PLHILQGQPMQSNPPTETTTKNEQTWTESSADEQPSTSNPEKSNEN--KSEGFQAKRHMI 722
           P    +G  + S PP    T          A+ Q    N ++S      ++G   ++   
Sbjct: 665 PSEC-EGTFIPS-PPAAYKTDGISMIPPCDANNQWQCVNAQQSRATDINADGIMQQQQQQ 722

Query: 723 DSLLKNRDVKVGSHLHPHRGLMLPPVLTESPDEGYEGEGPETTEM 767
            S+   +                  VLTESPDEGY G+  E+ ++
Sbjct: 723 CSMSSKKTQA---------------VLTESPDEGYVGDTTESGDI 752

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125045|ref|XP_001654226.1| kek1 [Aedes aegypti] gi|108882755|gb|EAT46980.1| AAEL001894-PA [Aedes aegypti]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 297/695 (42%), Positives = 416/695 (59%), Gaps = 40/695 (5%)

Query: 11  IIKIVSACPTS-CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKF 69
           +++ V+ CPT  C+CKWKGGKQTVEC  K L  + E MDP TQVL+++GN+L  L NE+F
Sbjct: 1   MLRQVNGCPTDVCVCKWKGGKQTVECGGKLLPRIPEEMDPGTQVLNFSGNSLTVLQNERF 60

Query: 70  QKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT 129
           +K+ L+NLQKIYL+R ++  I  KAF+GLTNLV+LD S N L  VP+DTF DYP+LM+L+
Sbjct: 61  KKLDLINLQKIYLARNQLMRIHEKAFKGLTNLVELDLSENSLTAVPTDTFSDYPALMRLS 120

Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189
           LSGNPI+ ++T AF+ LSYL TLELS C IE+IED AF+G+D+LEWL+LD N+ITTI G+
Sbjct: 121 LSGNPIRTLQTNAFKHLSYLTTLELSNCQIELIEDEAFIGMDNLEWLRLDGNRITTIQGN 180

Query: 190 NILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAI-DPICSVPPRLSSVTIKQLSI 248
           ++LP  LHGI+L  N W CDC L+ +  WL S   P    +P CS P RL+   IK +  
Sbjct: 181 HVLPENLHGINLQANRWQCDCRLLDIHTWLNSFNVPQRQEEPKCSGPLRLAGQVIKTIPQ 240

Query: 249 DELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAV 308
           ++LAC P ITP + Y EI EG+N+SL CK+SAIPEA ++W F G  +QN+S+ AS  H  
Sbjct: 241 EDLACLPIITPDSLYREISEGRNMSLTCKISAIPEASVSWWFQGQLLQNDSLLASNLHLY 300

Query: 309 YSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFP 368
           +  E+  E K+SEL+IYN + +DNGTF C+AEN AG   +NYT+ +++KEE V     F 
Sbjct: 301 HYNEDSGEEKRSELMIYNISPEDNGTFSCIAENSAGRVQANYTLHVIVKEEPVVEEVSFS 360

Query: 369 LEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKKKKLKKKDESDKNVNGSNENVVKNLRES 428
            E+ LI+ G  S  +  L FL +   +C   K+   +  +   +   GS+ N   N ++ 
Sbjct: 361 QEHFLIIVG-ASAATGFLFFLTLCIIICKCSKRSSKRTSNMKSRGKPGSDTN--PNSQKC 417

Query: 429 PKYTSVNATSATCMDKVNGGYIIADGH-NDMMLYATDSGILVATNNMNTY---------P 478
              T+    S TC  K+NG   I++ +  D++LY    G L      N           P
Sbjct: 418 SSITNDIGESLTCA-KINGTVAISESNPQDVVLYLNTGGNLEKAGLSNLQLGGQAQFCSP 476

Query: 479 SYSISYQIEQNPDLVNDAESVDKDRRAQGGEDTQDTQDKASEAASVQYSDSGSQCQEWGN 538
             + SYQ +QNPDL+NDAES +K R      D+   +  + E +S+Q + S +  Q+   
Sbjct: 477 PSARSYQ-DQNPDLINDAESGNKIRSRADAIDSDAGEKDSDEQSSIQDASSEASYQQSYF 535

Query: 539 VCYNRMQPMQ----------HIVLNNVYNQPADIHLTPEKFMDRDGYPVDFGLPKVPTHF 588
                ++P+             +  ++Y    DIHL+P  F+D++GYPVD  +       
Sbjct: 536 QTPMGIRPIAPRISALSTLPRGINKDMYQHQVDIHLSPGCFLDQNGYPVDLNM------M 589

Query: 589 PALVPATAYYRTLPHRRHTAANPNN-RYSREAEFLSRSSQPASYEHY-APADVRYNIEGY 646
               P   YYRTLPH R      N  RYS +AEF++R+SQ  +Y+ Y AP DVRY  EGY
Sbjct: 590 AQGGPTVNYYRTLPHNRGQKGQQNKIRYSNDAEFITRTSQ--TYQLYGAPPDVRYTAEGY 647

Query: 647 PSASPTPYSSAPRVTFTEPLHILQGQPMQSN--PP 679
           P   P    +     F  P    +G+P+ ++  PP
Sbjct: 648 PQ-QPAIGDATGTSQFPSPPEGYKGEPITASGVPP 681

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170063709|ref|XP_001867219.1| kek1 [Culex quinquefasciatus] gi|167881270|gb|EDS44653.1| kek1 [Culex quinquefasciatus]

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 289/707 (40%), Positives = 410/707 (57%), Gaps = 57/707 (8%)

Query: 5   IFLIATIIKIVSACPTS-CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKT 63
           +F    ++  V  CP+  C+CKWKGGKQTVEC  + L  + EGMDP TQVL+++GN L  
Sbjct: 11  LFNTMRLVTGVDGCPSEVCVCKWKGGKQTVECGGRMLSRIPEGMDPGTQVLNFSGNGLTI 70

Query: 64  LHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYP 123
           L +E+F+KM L+NLQKIY++R ++  I  +AFRGLTNLV+LD S N+L  VP++TF DYP
Sbjct: 71  LQSERFKKMDLINLQKIYMARNQLIKIHDRAFRGLTNLVELDLSENMLPVVPTETFADYP 130

Query: 124 SLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI 183
           +LM+LTLSGNPI+ ++T AF+ LS+L TLELS C IE++ED AF+G+D+LEWL+LD N+I
Sbjct: 131 ALMRLTLSGNPIRTLRTNAFKHLSFLTTLELSNCQIEMVEDEAFIGMDNLEWLRLDGNRI 190

Query: 184 TTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTI 243
           TTI G+++LP  LHGI+L  N W CDC L+ +  WL S   P   +P CS P RL+  TI
Sbjct: 191 TTIQGNHVLPGSLHGINLQANRWQCDCRLLDVHTWLNSFNVPQREEPKCSGPLRLAGQTI 250

Query: 244 KQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSAS 303
           K +  ++LAC P ITP + Y EI EG+N++L C V+AIPE  ++W F G  +QN+SM A 
Sbjct: 251 KSVRQEDLACLPIITPDSLYREIAEGRNMTLTCTVTAIPEPIVSWWFQGQMLQNDSMLAP 310

Query: 304 ESHAVYSTEE--GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENV 361
             H  +  +    TE K+SELLI+N+  D+NGTF C+AEN AG   +NYT+ +++KEE V
Sbjct: 311 NLHLYHYNDNAGATEEKRSELLIFNAGPDENGTFSCIAENSAGRVQANYTLHVIVKEEPV 370

Query: 362 EVVTVFPLEYVLIVSGIISVCSLVLIFLLVL----CFLCFRRKKKKLKKKDESDKNVNGS 417
                F  EY L++ G  +    +L  +L +    C     +++ K + K  SD      
Sbjct: 371 VEEVTFSQEYFLVIVGASAATGFLLFLILCIIICRCSRSSGKRRSKSRGKSGSDTTTTSQ 430

Query: 418 NENVVKNLRESPKYTSVNATSATCMDKVNGGYIIADG-HNDMMLYAT------DSGI--- 467
             + + N    P          TC  K+NG   I D    D++LY +       SG+   
Sbjct: 431 KCSSITNDIGEP---------LTCA-KINGTVSIGDSNQQDVVLYLSTGNNHDKSGMNNL 480

Query: 468 -LVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRRAQGGEDTQDTQDKASEAASVQY 526
            L         P  + SYQ +QNPDL+NDAES +K R  Q   D+   +  + E +SVQ 
Sbjct: 481 ALAGGQVQFCSPPSARSYQ-DQNPDLINDAESGNKIRPRQDHLDSDVGEKDSDEQSSVQD 539

Query: 527 SDSGSQCQ----EWGNVCYNRMQP-------MQHIVLNNVYNQPADIHLTPEKFMDRDGY 575
           + S +  Q    +   +   +M P       +   V  ++Y    DIHL+P  F+D++GY
Sbjct: 540 ASSEASYQQNYFQQPTMAVRQMGPRFSALSTLPRGVNKDMYQHQVDIHLSPGCFLDQNGY 599

Query: 576 PVDFGLPKVPTHFPALVPATAYYRTLPHRRHTAANPNN---RYSREAEFLSRSSQPASYE 632
           P+D  +           P   Y+RTLPH R     PN    RYS +AEF++R+SQ  +Y+
Sbjct: 600 PIDLNM-----MTQGGGPPVNYFRTLPHNRGQKGQPNANKIRYSNDAEFITRTSQ--TYQ 652

Query: 633 HY------APADVRYNIEGYPSASPTPYSSAPRVTFTEPLHILQGQP 673
            Y       P D+RY  EGYP  +    ++ P   F  P    +G+P
Sbjct: 653 FYGGGGGGGPGDIRYTAEGYPQPNSDGSATNPS-QFPSPPDGYKGEP 698

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081769|ref|XP_973294.1| PREDICTED: similar to kek1 [Tribolium castaneum] gi|270006275|gb|EFA02723.1| hypothetical protein TcasGA2_TC008448 [Tribolium castaneum]

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 276/655 (42%), Positives = 373/655 (56%), Gaps = 102/655 (15%)

Query: 2   MYW----IFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYT 57
           M W    +FLI ++ +  S CP  C CKWK GKQTVEC+NK L+ + EGMD +TQVL + 
Sbjct: 1   MSWRGALVFLILSLTQ-CSGCPVFCSCKWKSGKQTVECINKDLLVIPEGMDSSTQVLQFC 59

Query: 58  GNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSD 117
           GNNL+TL  +KF KM L+NLQ+IYL RCRI+ ID + FRGLTNLV+LD S N+L+TVPS+
Sbjct: 60  GNNLQTLQRDKFLKMDLINLQRIYLCRCRITSIDDRTFRGLTNLVELDLSGNLLETVPSE 119

Query: 118 TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLK 177
           TF D PSLM+L+L+ NPIK ++  AF  LS+L T+ELS C I  +E  AF GL SLEWL 
Sbjct: 120 TFLDCPSLMRLSLNANPIKTLRRAAFNHLSFLNTIELSNCEISNVEQGAFQGLYSLEWLH 179

Query: 178 LDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPR 237
           L+ NK+TT+ G+  LP  L G+ L  NPW CDC ++ L  WL +   P +++P+C+ P R
Sbjct: 180 LNGNKMTTLQGATYLPKSLKGVQLQENPWECDCHILELHAWLRAFTMPHSVEPLCNGPTR 239

Query: 238 LSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQN 297
           L S TIK + + ELAC P+++P+ FYLEI EGKNV+LLC+V+AIPEA+I+W F G  +QN
Sbjct: 240 LRSRTIKSVPVGELACLPEVSPTMFYLEIGEGKNVTLLCQVNAIPEARISWTFQGQLLQN 299

Query: 298 ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
           +SM A   H +Y  EEG   K+SEL IYNSN DDNGTF+C AEN AG   +N+TIR+++K
Sbjct: 300 DSMIAPGVHLLYFIEEGAVEKRSELFIYNSNSDDNGTFICNAENAAGLVQANFTIRVIVK 359

Query: 358 EENVEVVTVFPLEYVLI-VSGIISVCSLVLIFLLVLCFLCFRRKKKKLKKKDESDKNVNG 416
            +   V    P E++LI +S       L+L+ +L+    C R  + K K+ +      N 
Sbjct: 360 HDTPPVTNELPFEFILITLSAAAVSILLLLVVILLSIIKCHRNARLKKKRNNSKAALSNT 419

Query: 417 SNENVVKNLRES-PKYTSVNATSATCMDKVNGGYIIADGHNDMMLYATDSGILVATNNMN 475
           + +N+   L+ES   Y+    T                   + MLY T    L  +    
Sbjct: 420 TKDNL---LQESVDDYSEKPPTQ----------------EEETMLYNTPPEDLPVS---- 456

Query: 476 TYPSYSISYQIEQNPDLVNDAESVDKDRRAQGGEDTQDTQDKASEAASVQYSDSGSQCQE 535
           + P     YQ+EQNPDL+N  ESV                                    
Sbjct: 457 SIPPTLTPYQLEQNPDLINGTESV------------------------------------ 480

Query: 536 WGNVCYNRMQPMQHIVLNNVYNQPADIHLTPEKFMDRDGYPVDFGLPKVPTHFPALVPAT 595
                  R  P++     ++Y    D+HL P   ++                       +
Sbjct: 481 ------GRFTPLKK---RDLYVYAPDVHLNPVGLLNS---------------------GS 510

Query: 596 AYYRTLPH---RRHTAANPNNRYSREAEFLSRSSQPASYEHYAPADVRYNIEGYP 647
             Y+TLP+   +R  AANP  R+SREAEFL R+  P SYEHY  +DVRY  +GYP
Sbjct: 511 NCYKTLPYNRNKRSNAANPAGRFSREAEFLQRTMHP-SYEHY--SDVRYTADGYP 562

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373578|gb|EFR21292.1| hypothetical protein AND_17259 [Anopheles darlingi]

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 283/756 (37%), Positives = 391/756 (51%), Gaps = 119/756 (15%)

Query: 11  IIKIVSACPTS-CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKF 69
           I+  V  CP   C+CKWKGGKQTVEC  ++L  + +GMDP TQVL+++ N L  L +E+F
Sbjct: 149 IVPPVDGCPAEVCVCKWKGGKQTVECGGRALNRLPDGMDPGTQVLNFSSNGLTILQSERF 208

Query: 70  QKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT 129
           ++M L+NLQKIYL+R ++  I  +AFRGLTNLV+LD S N+L  VPS+TF DY +LM+L+
Sbjct: 209 KRMDLINLQKIYLARNQLVKIHDRAFRGLTNLVELDLSDNMLSEVPSETFADYSALMRLS 268

Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189
           LSGNPI+ ++T  F+ LSYL TLELS C +E++ED AF+G+D+LEWL+LD N+ITTI G+
Sbjct: 269 LSGNPIRALRTSGFKHLSYLTTLELSNCQVELVEDEAFIGMDNLEWLRLDGNRITTIRGA 328

Query: 190 NILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSID 249
           ++LP  LHGI+L  N W CDC L  +  WL     P   +  C+ PPRL+  T+K L +D
Sbjct: 329 HVLPASLHGINLQSNRWHCDCQLTDIHTWLNRFNVPQREEIKCTSPPRLAGETVKALPLD 388

Query: 250 ELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309
           +LAC P ITP T Y EI EG+N+SL C++SA PE  I WLF G  + NES+     H  Y
Sbjct: 389 DLACLPIITPETSYREIAEGRNISLDCRISATPEPSIAWLFQGQVLLNESLLVPNLHLYY 448

Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPL 369
             ++    K SEL IYN N++DNGT+ CVAEN AG   +NYT+ +++KEE V     F  
Sbjct: 449 YIDDVDGEKHSELFIYNINVEDNGTYSCVAENSAGRVQTNYTLHVIVKEEPVVEQVTFSE 508

Query: 370 EYVLIVSGIISVCSLVLIFLLVL----CFLCFRRKKKKLKKKDESDKNVNGSNENVVKNL 425
           EY L++ G  +    +L  +L +    C    RR+     KK    +      +      
Sbjct: 509 EYFLVIVGASAAIGFLLFLILCVIVCRCARTGRRRTALNGKKGVPGRGSKSGPDGQCGTG 568

Query: 426 RESPKYTSVNATSATCMDKVN-----GGY--IIADGHN---------------------- 456
                     AT+  C    N     GG+  + A   N                      
Sbjct: 569 GGILGGGVGGATNQKCASITNHADLHGGHEPLTAAKMNGMLGGLGGPGGPGGGGGIGGDG 628

Query: 457 -------DMMLY----------ATDSGILVATNNMNTY--PSYSISYQIEQNPDLVNDAE 497
                  D++LY          ++ + +L     M  +  P  + SYQ +QNPDL+NDAE
Sbjct: 629 MGVGGPQDIVLYLNTNPNQLDKSSAAAVLSNMTAMAQFCSPPSARSYQ-DQNPDLINDAE 687

Query: 498 S------------VDKDRRAQGGEDTQDTQDKASEAASVQ-----------------YSD 528
           S            ++ D   +  ++    QD  SEA+ VQ                 +  
Sbjct: 688 SGQNKTRPRPPDTLESDLGEKDSDEQSSVQDGGSEASYVQGPYYPPPSVGLGPRGPRFIA 747

Query: 529 SGSQCQEWGNVCYNRMQPMQHIVLNNV----------------------YNQPADIHLTP 566
           SG      G     + +P+   +                          Y    DIHL+P
Sbjct: 748 SGMATLPRGGGGGLQSKPIVEQLQLQQQQHQHQQQHQQQQHQQQQLMSPYQHQVDIHLSP 807

Query: 567 EKFMDRDGYPVDFGLPKVPTHFPALVPATAYYRTLPHRRHTAANPNN-------RYSREA 619
             F+D++GYPVD  L   P       P   YYRTLPH R    +P+        RY+ +A
Sbjct: 808 GCFLDQNGYPVDLSLMAGPNG-----PTVNYYRTLPHNRGQKTSPSQGPGGPKVRYANDA 862

Query: 620 EFLSRSSQPASYEHYAPA-DVRYNIEGYPSAS-PTP 653
           EF+SR+S  +    YAPA DVRY  EGYP    P+P
Sbjct: 863 EFISRTSSQSYQLAYAPATDVRYTAEGYPDPQFPSP 898

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437746|ref|XP_002066801.1| GK24359 [Drosophila willistoni] gi|194162886|gb|EDW77787.1| GK24359 [Drosophila willistoni]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 285/752 (37%), Positives = 399/752 (53%), Gaps = 143/752 (19%)

Query: 17  ACPTS-CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
           ACP   C+CKWKGGKQTVEC  + L T+ EGMDP TQVL+++GN+L+ L +E+F +M L+
Sbjct: 23  ACPPEVCVCKWKGGKQTVECGGQQLSTIPEGMDPGTQVLNFSGNSLQVLQSERFLRMDLL 82

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
           NLQKI+LSR ++  I  KAFRGLTNLV+LD S N LQ VPS+TF DY SLM+L+LSGNPI
Sbjct: 83  NLQKIHLSRNQLIRIHEKAFRGLTNLVELDLSENALQHVPSETFQDYSSLMRLSLSGNPI 142

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
           +++KT AF+ LS+L TLELS C +E IE+ AFVG+D+LEWL+LD N+I+ I G++ILP  
Sbjct: 143 RELKTSAFRHLSFLTTLELSNCQVERIENEAFVGMDNLEWLRLDGNRISFIQGNHILPKS 202

Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEP 255
           LHGI LH N W CDC L+ +  WL +   P+A +P C  P RL    IKQL   +LAC P
Sbjct: 203 LHGISLHSNRWNCDCRLLDVHSWLTNYNIPLAEEPKCMEPARLKGQVIKQLQRPQLACLP 262

Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE-- 313
           +++P + Y E+ EG+N+S+ C V AIPE K+ WLF+G  + N+S+     H  Y  +E  
Sbjct: 263 EVSPQSSYTEVSEGRNMSITCLVRAIPEPKVLWLFNGQVMSNDSL-MDNLHMYYYIDESI 321

Query: 314 ---GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLE 370
              G E K+SE+ IYN   +DNGTF CV +N AG+T SNYT+R+++KE  V     FP +
Sbjct: 322 GGSGAEEKRSEIFIYNVGAEDNGTFSCVGQNIAGTTFSNYTLRVIIKEPPVVNEVSFPRD 381

Query: 371 YVLIVSGIISVCSLVLIFLLVLCFLCFRRKK-----KKLKKKDE--------SDKNVNGS 417
           Y+  +  + S     +IF+++LC +  + K+     K+ KK D+        SD N   S
Sbjct: 382 YMNYI--VASSAGGGIIFVVLLCTIVVKCKRTSEPAKQGKKCDQVTSIAGGGSDSNTTSS 439

Query: 418 NENVVKNLRESPKYTSVNATSATCMDKVNGGYIIADG---------------------HN 456
            +  +  +    K  S+   ++  ++  N G ++AD                        
Sbjct: 440 QDTGLGMM----KCASILNDNSESLNG-NAGLLLADTLTPTKVTNGGAGGGIILGGQMKQ 494

Query: 457 DMMLYAT-------------------DSG-----ILVATNNMNTYPSYSISYQIEQNPDL 492
           +++LYAT                   + G     +L+   +    P  S+    E+NPDL
Sbjct: 495 NLLLYATPNPASNQPQQLQLNVNLMGNGGAGSPPLLIGNASAYCSPPASLRNYQEKNPDL 554

Query: 493 VNDAESVDKDRRAQGGEDTQDTQDKASEAASVQYSDSGSQCQEWGNVCYNRMQPMQ-HIV 551
           VNDAESV    +     D  D  + +S+    QY             CY ++ P Q H  
Sbjct: 555 VNDAESVKHKLKTAVSLDAADVYETSSDCG--QYEG-----------CY-QLHPAQPHHP 600

Query: 552 LNNVYNQP------------------------ADIHLTPEKFMDRDGYPVDFGLPKV--- 584
           L   + Q                          D+HL P  F+ +DG+  D+    +   
Sbjct: 601 LMGRFTQAMTTLPRGMQLKSIAAASGAASPHQVDVHLNPVCFLGQDGFAYDYSSAHLIQQ 660

Query: 585 --------------------PTHFPALVPATAYYRTLPHRR-------HTAANPNN--RY 615
                                     L P T +YRTLPH R         A  PN+  RY
Sbjct: 661 TPQQQQQQQQQQQQQQQHQQQLQQQQLPPNTNFYRTLPHNRLQKHQQFQGAIPPNSSLRY 720

Query: 616 SREAEFLSRSSQPASYEHYAPADVRYNIEGYP 647
           S EAEF+ R++ P SYE Y   +VR+  EGYP
Sbjct: 721 SLEAEFIQRTAPPVSYEKYQLPNVRFTAEGYP 752

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198473958|ref|XP_001356502.2| GA18568 [Drosophila pseudoobscura pseudoobscura] gi|198138185|gb|EAL33566.2| GA18568 [Drosophila pseudoobscura pseudoobscura]

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 283/749 (37%), Positives = 396/749 (52%), Gaps = 114/749 (15%)

Query: 4   WIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKT 63
           ++ L+  +  +    P  CICKWKGGKQTVEC  + L  + EGMDP TQVL+++GN+L+ 
Sbjct: 5   FVALLLLVASVAGCPPEVCICKWKGGKQTVECGAQQLANIPEGMDPGTQVLNFSGNSLQV 64

Query: 64  LHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYP 123
           L +E+F +M L+NLQKIYLSR ++  I  KAFRGLTNLV+LD S N LQ VPS+TF DY 
Sbjct: 65  LQSERFLRMDLLNLQKIYLSRNQLIRIHEKAFRGLTNLVELDLSENALQHVPSETFQDYS 124

Query: 124 SLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI 183
           SLM+L+LSGNPI+++KT AF+ LS+L TLELS C +E IE+ AFVG+D+LEWL+LD N+I
Sbjct: 125 SLMRLSLSGNPIRELKTSAFRHLSFLTTLELSNCQVERIENEAFVGMDNLEWLRLDGNRI 184

Query: 184 TTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTI 243
             I GS+ILP  LHGI LH N W CDC L+ +  WL +  TP+A +P C  P RL    I
Sbjct: 185 GFIQGSHILPKSLHGISLHSNRWNCDCRLLDVHSWLVNFNTPLAEEPKCMEPARLKGQVI 244

Query: 244 KQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSAS 303
           K L  ++LAC P+++P + Y E+ EG+N+S+ C V AIPE K+ WLF+G  + N+S+   
Sbjct: 245 KGLQREQLACLPEVSPQSSYTEVSEGRNMSITCLVRAIPEPKVLWLFNGQVMSNDSL-MD 303

Query: 304 ESHAVYSTEE-----GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
             H  Y  +E     G E K+SE+ IYN   +DNGTF CV +N AG+T SNYT+R+++KE
Sbjct: 304 NLHMFYYIDESIGSSGAEEKRSEIFIYNVGAEDNGTFSCVGQNIAGTTFSNYTLRVIIKE 363

Query: 359 ENVEVVTVFPLEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKK-----KKLKKKDE---- 409
             V     FP +Y+  +  + S     +IF+++LC +  + K+     K+ KK D+    
Sbjct: 364 PPVVNEVSFPRDYMNYI--VASSAGGGIIFVVLLCTIVVKCKRTAEPAKQRKKCDQVTSI 421

Query: 410 --SDKNVNGSNENVVKNLRESPKYTSVNATSATCMDKVNGGYIIADG------------- 454
                +  GSN++    + +     +  A S T     N G ++ D              
Sbjct: 422 AGGTDSSAGSNQDTGMGMMKCASILNDGAESMTG----NAGMLLGDTMTPTKATNGAAGG 477

Query: 455 --------HNDMMLYAT---------------DSGI----LVATNNMNTYPSY-----SI 482
                     +++LYA                 SG     L+  N      +Y     S+
Sbjct: 478 GIILGGQMKQNLLLYAGPNQGQQQLQLNVNLMGSGAGSPPLLLGNGHGLAAAYCSPPASL 537

Query: 483 SYQIEQNPDLVNDAESVDKDRRA----QGGEDTQDTQDKASEAASVQYSDSGSQCQ---- 534
               E+NPDLVNDAESV    +      G  D + + D        Q + + +       
Sbjct: 538 RNYQEKNPDLVNDAESVKHKLKTAVSLDGTGDYETSSDCGQYEGCYQLAAAAAAHPHPHQ 597

Query: 535 ---------EWGNVCYNRMQPMQHIVLNNVYNQPA----DIHLTPEKFMDRDGYPVDFGL 581
                     +        + MQ   +    +QPA    D+HL P  F+ +DG+  D+  
Sbjct: 598 HPHAHPLMGRFTQAMTTLPRGMQLKSVMAGTHQPAPHQVDVHLNPVCFLGQDGFAYDYSS 657

Query: 582 PKV--------------PTHFPALVPATAYYRTLPHRR-------HTAANPNN--RYSRE 618
             +                      PA  +YRTLPH R         AA PN+  RYS E
Sbjct: 658 AHLVQQTPQQQQQQQQQQLQPAGPQPAANFYRTLPHNRLHKQQQFQGAAAPNSSLRYSLE 717

Query: 619 AEFLSRSSQPASYEHYAPADVRYNIEGYP 647
           AEF+ R   P SYE Y   +VR+  EGYP
Sbjct: 718 AEFIQRG--PVSYEKYQMPNVRFTAEGYP 744

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195340171|ref|XP_002036690.1| GM19128 [Drosophila sechellia] gi|194130570|gb|EDW52613.1| GM19128 [Drosophila sechellia]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 284/740 (38%), Positives = 395/740 (53%), Gaps = 101/740 (13%)

Query: 4   WIFLIATIIKIVSACPTS-CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLK 62
           WI L+A ++ I +ACP   C+CKWKGGKQTVEC  + L  + EGMDP TQVL+++GN L+
Sbjct: 7   WIPLLA-LLGITAACPPEVCVCKWKGGKQTVECGGQQLSNLPEGMDPGTQVLNFSGNALQ 65

Query: 63  TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDY 122
            L +E+F +M L+NLQKIYLSR ++  I  KAFRGLTNLV+LD S N LQ VPS+TF DY
Sbjct: 66  VLQSERFLRMDLLNLQKIYLSRNQLIRIHEKAFRGLTNLVELDLSENALQNVPSETFQDY 125

Query: 123 PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNK 182
            SLM+L+LSGNPI+++KT AF+ LS+L TLELS C +E IE+ AFVG+D+LEWL+LD N+
Sbjct: 126 SSLMRLSLSGNPIRELKTSAFRHLSFLTTLELSNCQVERIENEAFVGMDNLEWLRLDGNR 185

Query: 183 ITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVT 242
           I  I G++ILP  LHGI LH N W CDC L+ +  WL +  TP+A +P C  P RL    
Sbjct: 186 IGFIQGTHILPKSLHGISLHSNRWNCDCRLLDIHFWLVNYNTPLAEEPKCMEPARLKGQV 245

Query: 243 IKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA 302
           IK L  ++LAC P+++P + Y E+ EG+N+S+ C V AIPE K+ WLF+G  + N+S+  
Sbjct: 246 IKSLQREQLACLPEVSPQSSYTEVSEGRNMSITCLVRAIPEPKVLWLFNGQVMSNDSL-M 304

Query: 303 SESHAVYSTEE-----GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
              H  Y  +E     G E K+SE+ IYN   +DNGTF CV +N AG+T SNYT+R+++K
Sbjct: 305 DNLHMYYYIDETIGVSGAEEKRSEIFIYNVGAEDNGTFSCVGQNIAGTTFSNYTLRVIIK 364

Query: 358 EENVEVVTVFPLEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKK-----KKLKKKDESDK 412
           E  V     FP +Y+  +  + S     +IF+++LC +  + KK     K+ KK D+   
Sbjct: 365 EPPVVNEVSFPRDYMNYI--VASSAGGGIIFVVLLCTIVVKCKKTSEPVKQRKKCDQVTS 422

Query: 413 NVNGSNENVVKNLRESPKYTSVNATSATCMDKVNG--GYIIADG---------------- 454
              G++ +               +      D +NG  G ++ D                 
Sbjct: 423 IAGGTDSSTGSTQDTGMGMMKCASILNDGGDSLNGNAGLLLGDTLTPTKAANGAAGGGII 482

Query: 455 -----HNDMMLYATDSG----ILVATNNMNTYPS--------------------YSISYQ 485
                  +++LYAT +     + +  N M T P                      S+   
Sbjct: 483 LGNQMKQNLLLYATPNSAQQQLQLNVNLMGTGPGSPPLLLSNGHGLAAAYCSPPASLRNY 542

Query: 486 IEQNPDLVNDAESVD---KDRRAQGGEDTQDTQDKAS------EAASVQYSDSGSQCQEW 536
            E+NPDLVNDAESV    K   +  G    +TQ          + A+  +   G Q    
Sbjct: 543 QEKNPDLVNDAESVKHKLKTAVSLDGAGEYETQSDCGQYEGCYQLAAAPHPHQGHQHPHP 602

Query: 537 GNVCYNRMQPMQHIVLNNVYNQPA----DIHLTPEKFMDRDG-YPVDFGLPKV------- 584
           G+    R       +   +  +PA    D+HL P  F+ +DG +  D+    +       
Sbjct: 603 GHPLMGRFAQAMTTLPRGMQLKPAPHQVDVHLNPVCFLGQDGSFAYDYSSAHMVQQPPQQ 662

Query: 585 PTHFPALVPATAYYRTLPHRR-----------------HTAANPNNRYSREAEFLSRSSQ 627
                 + PA  +YRTLPH R                     NP  RYS EAEF+ R   
Sbjct: 663 QQQQQQVQPANNFYRTLPHNRLHKQQQFQAAAAAGGNVGVCGNPTLRYSLEAEFIQRGPT 722

Query: 628 PASYEHYAPADVRYNIEGYP 647
             SYE Y   +VR+  EGYP
Sbjct: 723 -VSYEKYQLPNVRFTAEGYP 741

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|77455272|gb|ABA86445.1| CG4977 [Drosophila yakuba]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 277/724 (38%), Positives = 384/724 (53%), Gaps = 99/724 (13%)

Query: 19  PTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQ 78
           P  C+CKWKGGKQTVEC  + L  + EGMDP TQVL+++GN L+ L +E+F +M L+NLQ
Sbjct: 15  PEVCVCKWKGGKQTVECGGQQLSNLPEGMDPGTQVLNFSGNALQVLQSERFLRMDLLNLQ 74

Query: 79  KIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQI 138
           KIYLSR ++  I  KAFRGLTNLV+LD S N LQ VPS+TF DY SLM+L+LSGNPI+++
Sbjct: 75  KIYLSRNQLIRIHEKAFRGLTNLVELDLSENALQNVPSETFQDYSSLMRLSLSGNPIREL 134

Query: 139 KTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHG 198
           KT AF+ LS+L TLELS C +E IE+ AFVG+D+LEWL+LD N+I  I G++ILP  LHG
Sbjct: 135 KTSAFRHLSFLTTLELSNCQVERIENEAFVGMDNLEWLRLDGNRIGFIQGTHILPKSLHG 194

Query: 199 IDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQIT 258
           I LH N W CDC L+ +  WL +  TP+A +P C  P RL    IK L  ++LAC P+++
Sbjct: 195 ISLHSNRWNCDCRLLDIHFWLVNYNTPLAEEPKCMEPARLKGQVIKSLQREQLACLPEVS 254

Query: 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE----- 313
           P + Y E+ EG+N+S+ C V AIPE K+ WLF+G  + N+S+     H  Y  +E     
Sbjct: 255 PQSSYTEVSEGRNMSITCLVRAIPEPKVLWLFNGQVMSNDSL-MDNLHMYYYIDETIGIS 313

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVL 373
           G E K+SE+ IYN   +DNGTF CV +N AG+T SNYT+R+++KE  V     FP +Y+ 
Sbjct: 314 GAEEKRSEIFIYNVGAEDNGTFSCVGQNIAGTTFSNYTLRVIIKEPPVVNEVSFPRDYMN 373

Query: 374 IVSGIISVCSLVLIFLLVLCFLCFRRKK-----KKLKKKDESDKNVNGSNENVVKNLRES 428
            +  + S     +IF+++LC +  + KK     K+ KK D+      G++ +        
Sbjct: 374 YI--VASSAGGGIIFVVLLCTIVVKCKKTSEPAKQRKKCDQVTSIAGGTDSSTGSTQDTG 431

Query: 429 PKYTSVNATSATCMDKVNG--GYIIADG---------------------HNDMMLYAT-- 463
                  +      D +NG  G ++ D                        +++LYAT  
Sbjct: 432 MGMMKCASILNDGGDSLNGNAGLLLGDTLTPTKAANGAAGGGIILGNQMKQNLLLYATPN 491

Query: 464 --DSGILVATNNMNTYPS--------------------YSISYQIEQNPDLVNDAESVD- 500
                + +  N M T P                      S+    E+NPDLVNDAESV  
Sbjct: 492 PAQQQLQLNVNLMGTGPGSPPLLLSNGHGLAAAYCSPPASLRNYQEKNPDLVNDAESVKH 551

Query: 501 --KDRRAQGGEDTQDTQDKAS------EAASVQYSDSGSQCQEWGNVCYNRMQPMQHIVL 552
             K   +  G    +TQ          + A+  ++  G Q    G+    R       + 
Sbjct: 552 KLKTAVSLDGAGEYETQSDCGQYEGCYQLAAAPHAHPGHQHPHPGHPLMGRFAQAMTTLP 611

Query: 553 NNVYNQPA----DIHLTPEKFMDRDG-YPVDFGLPKV-------PTHFPALVPATAYYRT 600
             +  +PA    D+HL P  F+ +DG +  D+    +             + PA  +YRT
Sbjct: 612 RGMQLKPAPHQVDVHLNPVCFLGQDGSFAYDYSSAHLVQQPPQQQQQQQQVQPANNFYRT 671

Query: 601 LPHRR-----------------HTAANPNNRYSREAEFLSRSSQPASYEHYAPADVRYNI 643
           LPH R                     NP  RYS EAEF+ R     SYE Y   +VR+  
Sbjct: 672 LPHNRLHKQQQFQAAAAAGGNVGVGGNPTLRYSLEAEFIQRGPT-VSYEKYQLPNVRFTA 730

Query: 644 EGYP 647
           EGYP
Sbjct: 731 EGYP 734

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194861653|ref|XP_001969826.1| GG23727 [Drosophila erecta] gi|190661693|gb|EDV58885.1| GG23727 [Drosophila erecta]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 281/743 (37%), Positives = 391/743 (52%), Gaps = 103/743 (13%)

Query: 4   WIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKT 63
           WI L+A +    +  P  C+CKWKGGKQTVEC  + L  + EGMDP TQVL+++GN L+ 
Sbjct: 7   WIPLLALVALTAACPPEVCVCKWKGGKQTVECGGQQLSNLPEGMDPGTQVLNFSGNALQV 66

Query: 64  LHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYP 123
           L +E+F +M L+NLQKIYLSR ++  I  KAFRGLTNLV+LD S N LQ VPS+TF DY 
Sbjct: 67  LQSERFLRMDLLNLQKIYLSRNQLIRIHEKAFRGLTNLVELDLSENALQNVPSETFQDYS 126

Query: 124 SLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI 183
           SLM+L+LSGNPI+++KT AF+ LS+L TLELS C +E IE+ AFVG+D+LEWL+LD N+I
Sbjct: 127 SLMRLSLSGNPIRELKTSAFRHLSFLTTLELSNCQVERIENEAFVGMDNLEWLRLDGNRI 186

Query: 184 TTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTI 243
             I G++ILP  LHGI LH N W CDC L+ +  WL +  TP+A +P C  P RL    I
Sbjct: 187 GFIQGTHILPKSLHGISLHSNRWNCDCRLLDIHFWLVNYNTPLAEEPKCMEPARLKGQVI 246

Query: 244 KQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSAS 303
           K L  ++LAC P+++P + Y E+ EG+N+S+ C V AIPE K+ WLF+G  + N+S+   
Sbjct: 247 KSLQREQLACLPEVSPQSSYTEVSEGRNMSITCLVRAIPEPKVLWLFNGQVMSNDSL-MD 305

Query: 304 ESHAVYSTEE-----GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
             H  Y  +E     G E K+SE+ IYN   +DNGTF CV +N AG+T SNYT+R+++KE
Sbjct: 306 NLHMYYYIDETIGVSGAEEKRSEIFIYNVGAEDNGTFSCVGQNIAGTTFSNYTLRVIIKE 365

Query: 359 ENVEVVTVFPLEYVLIVSGIISVCSLVLIFLLVLCFLCFRRKK-----KKLKKKDESDKN 413
             V     FP  Y+  +  + S     +IF+++LC +  + KK     K+ KK D+    
Sbjct: 366 PPVVNEVSFPRYYMNYI--VASSAGGGIIFVVLLCTIVVKCKKTSEPAKQRKKCDQVTSI 423

Query: 414 VNGSNENVVKNLRESPKYTSVNATSATCMDKVNG--GYIIADG----------------- 454
             G++ +               +      D +NG  G ++ D                  
Sbjct: 424 AGGTDSSTGSTQDTGMGMMKCASILNDGGDSLNGNAGLLLGDTLTPTKAANGAAGGGIIL 483

Query: 455 ----HNDMMLYATDSG----ILVATNNMNTYPS--------------------YSISYQI 486
                 +++LYAT +     + +  N M T P                      S+    
Sbjct: 484 GNQMKQNLLLYATPNSAQQQLQLNVNLMGTGPGSPPLLLSNGHGLAAAYCSPPASLRNYQ 543

Query: 487 EQNPDLVNDAESVD---KDRRAQGGEDTQDTQDKAS------EAASVQYSDSGSQCQEWG 537
           E+NPDLVNDAESV    K   +  G    +TQ          + A+  ++  G Q    G
Sbjct: 544 EKNPDLVNDAESVKHKLKTAVSLDGAGEYETQSDCGQYEGCYQLAAAPHAHPGHQHPHPG 603

Query: 538 NVCYNRMQPMQHIVLNNVYNQPA----DIHLTPEKFMDRDG-YPVDFGLPKV-------- 584
           +    R       +   +  +PA    D+HL P  F+ +DG +  D+    +        
Sbjct: 604 HPLMGRFAQAMTTLPRGMQLKPAPHQVDVHLNPVCFLGQDGAFAYDYSSAHLVQQPPQQQ 663

Query: 585 ---PTHFPALVPATAYYRTLPHRR-----------------HTAANPNNRYSREAEFLSR 624
                    + PA  +YRTLPH R                     NP  RYS EAEF+ R
Sbjct: 664 QQPQQQQQQVQPANNFYRTLPHNRLHKQQQFQAAAAAGGGVGVGGNPTLRYSLEAEFIQR 723

Query: 625 SSQPASYEHYAPADVRYNIEGYP 647
                SYE Y   +VR+  EGYP
Sbjct: 724 GPT-VSYEKYQLPNVRFTAEGYP 745

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	767
FB|FBgn0015400	894	kek2 "kekkon-2" [Drosophila me	0.478	0.410	0.528	1.6e-113
FB|FBgn0015399	880	kek1 "kekkon-1" [Drosophila me	0.444	0.387	0.439	1.1e-82
FB|FBgn0028370	1021	kek3 "kekkon-3" [Drosophila me	0.461	0.346	0.364	3.3e-64
FB|FBgn0039862	836	kek6 "kek6" [Drosophila melano	0.444	0.407	0.310	1.2e-38
FB|FBgn0031016	931	kek5 "kekkon5" [Drosophila mel	0.435	0.358	0.280	1.9e-35
FB|FBgn0032484	649	kek4 "kekkon4" [Drosophila mel	0.468	0.553	0.289	5.1e-35
ZFIN|ZDB-GENE-060503-496	594	lrrc24 "leucine rich repeat co	0.359	0.464	0.294	8e-29
UNIPROTKB|Q50LG9	513	LRRC24 "Leucine-rich repeat-co	0.431	0.645	0.276	5.6e-26
MGI|MGI:3605040	521	Lrrc24 "leucine rich repeat co	0.414	0.610	0.291	2.3e-25
UNIPROTKB|F1P2C4	423	LRRC4C "Uncharacterized protei	0.401	0.728	0.284	1.1e-24

FB|FBgn0015400 kek2 "kekkon-2" [Drosophila melanogaster (taxid:7227)]

 Score = 1040 (371.2 bits), Expect = 1.6e-113, Sum P(2) = 1.6e-113
 Identities = 198/375 (52%), Positives = 264/375 (70%)

Query:     4 WIFLIATIIKIVSACPTS-CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLK 62
             WI L+A ++ I +ACP   C+CKWKGGKQTVEC  + L  + EGMDP TQVL+++GN L+
Sbjct:     7 WIPLLA-LLAITAACPPEVCVCKWKGGKQTVECGGQQLSNLPEGMDPGTQVLNFSGNALQ 65

Query:    63 TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDY 122
              L +E+F +M L+NLQKIYLSR ++  I  KAFRGLTNLV+LD S N LQ VPS+TF DY
Sbjct:    66 VLQSERFLRMDLLNLQKIYLSRNQLIRIHEKAFRGLTNLVELDLSENALQNVPSETFQDY 125

Query:   123 PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNK 182
              SLM+L+LSGNPI+++KT AF+ LS+L TLELS C +E IE+ AFVG+D+LEWL+LD N+
Sbjct:   126 SSLMRLSLSGNPIRELKTSAFRHLSFLTTLELSNCQVERIENEAFVGMDNLEWLRLDGNR 185

Query:   183 ITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVT 242
             I  I G++ILP  LHGI LH N W CDC L+ +  WL +  TP+A +P C  P RL    
Sbjct:   186 IGFIQGTHILPKSLHGISLHSNRWNCDCRLLDIHFWLVNYNTPLAEEPKCMEPARLKGQV 245

Query:   243 IKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA 302
             IK L  ++LAC P+++P + Y E+ EG+N+S+ C V AIPE K+ WLF+G  + N+S+  
Sbjct:   246 IKSLQREQLACLPEVSPQSSYTEVSEGRNMSITCLVRAIPEPKVLWLFNGQVMSNDSLM- 304

Query:   303 SESHAVYSTEE-----GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
                H  Y  +E     G E K+SE+ IYN   +DNGTF CV +N AG+T SNYT+R+++K
Sbjct:   305 DNLHMYYYIDETIGVSGAEEKRSEIFIYNVGAEDNGTFSCVGQNIAGTTFSNYTLRVIIK 364

Query:   358 EENVEVVTVFPLEYV 372
             E  V     FP +Y+
Sbjct:   365 EPPVVNEVSFPRDYM 379

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

FB|FBgn0015399 kek1 "kekkon-1" [Drosophila melanogaster (taxid:7227)]

 Score = 764 (274.0 bits), Expect = 1.1e-82, Sum P(3) = 1.1e-82
 Identities = 152/346 (43%), Positives = 215/346 (62%)

Query:    16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
             S C T C CKWKGGKQTVEC+++ LI + E +DPNTQVLD +GN L+TL NE+F +  L+
Sbjct:    88 STCQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSGNKLQTLSNEQFIRANLL 147

Query:    76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
             NLQK+YL  C+I  I+ + F+GLTNLV+LD SHN+L TVPS      PSL +LTL+ N I
Sbjct:   148 NLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGHIPSLRELTLASNHI 207

Query:   136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
              +I++ AF     L  L+LS C I+ I   AF GL  L  L+L+ NK++ +    I    
Sbjct:   208 HKIESQAFGNTPSLHKLDLSHCDIQTISAQAFGGLQGLTLLRLNGNKLSELLPKTIETLS 267

Query:   196 -LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSV-PPRLSSVTIKQLSIDELAC 253
              LHGI+LH NPW CDC L   + WL     P  + P+CS  P R+   +   L +DE AC
Sbjct:   268 RLHGIELHDNPWLCDCRLRDTKLWLMKRNIPYPVAPVCSGGPERIIDRSFADLHVDEFAC 327

Query:   254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNES-MSASES-HAVYST 311
              P++ P + Y+E   G+N S+ C+  A+P A I W ++G  + N S  +A +  H +   
Sbjct:   328 RPEMLPISHYVEAAMGENASITCRARAVPAANINWYWNGRLLANNSAFTAYQRIHMLEQV 387

Query:   312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
             E G E K+S+L++ N+   D+  F CVAEN+AG   +N+T+ + ++
Sbjct:   388 EGGFE-KRSKLVLTNAQETDSSEFYCVAENRAGMAEANFTLHVSMR 432

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0048477 "oogenesis" evidence=IMP

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI;IMP;TAS

GO:0005154 "epidermal growth factor receptor binding" evidence=IPI

GO:0007175 "negative regulation of epidermal growth factor-activated receptor activity" evidence=IDA;TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0048019 "receptor antagonist activity" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0028370 kek3 "kekkon-3" [Drosophila melanogaster (taxid:7227)]

 Score = 641 (230.7 bits), Expect = 3.3e-64, Sum P(2) = 3.3e-64
 Identities = 134/368 (36%), Positives = 203/368 (55%)

Query:     1 MMYWIFLIATII-KIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGN 59
             ++ W+    + + ++ + CP  C CKWK GK++V C+N +L  + + +D  TQ+LD +GN
Sbjct:    61 LLLWLLCCCSQLGQLRAECPAVCECKWKSGKESVLCLNANLTHIPQPLDAGTQLLDLSGN 120

Query:    60 NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTF 119
              ++ + ++ F    L+NLQK+YL+RC + +I+  AFR L NLV+LD S N+L  +PS   
Sbjct:   121 EIQLIPDDSFATAQLLNLQKVYLARCHLRLIERHAFRKLINLVELDLSQNLLSAIPSLAL 180

Query:   120 PDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDS-LEWLKL 178
                  L +L LSGNPI ++   AF  +  LV LELS C +  I   AF GL+S LEWLKL
Sbjct:   181 YHVSELRELRLSGNPILRVPDDAFGHVPQLVKLELSDCRLSHIAVRAFAGLESSLEWLKL 240

Query:   179 DNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPR 237
             D N+++ + SG+      LHG++L  N W C C L  LR W+     P  I P C  PPR
Sbjct:   241 DGNRLSEVRSGTITSLASLHGLELARNTWNCSCSLRPLRAWMLQQNIPSGIPPTCESPPR 300

Query:   238 LSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQN 297
             LS     +L +D+ AC PQI  +       EG+N+++ C V  +P+  + WL     I N
Sbjct:   301 LSGRAWDKLDVDDFACVPQIVATDTTAHGVEGRNITMSCYVEGVPQPAVKWLLKNRLIAN 360

Query:   298 ESMSAS-ESHAVYSTEEGTEIKK----------SELLIYNSNIDDNGTFVCVAENQAGST 346
              S     +S +   T   T+ +K          S L I  +++ D G + C AEN+AG  
Sbjct:   361 LSAGGDGDSDSEPRTAAATQGRKTYVVNMLRNASNLTILTADMQDAGIYTCAAENKAGKV 420

Query:   347 SSNYTIRI 354
              ++ T+ +
Sbjct:   421 EASVTLAV 428

GO:0005886 "plasma membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0039862 kek6 "kek6" [Drosophila melanogaster (taxid:7227)]

 Score = 440 (159.9 bits), Expect = 1.2e-38, P = 1.2e-38
 Identities = 111/357 (31%), Positives = 177/357 (49%)

Query:     4 WIFL--IA-TIIKIVS-ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGN 59
             WI L  +A T+    S +C ++C CKW  GK++  C +  L T+   +    QVL    N
Sbjct:    20 WILLCLVAWTVADDWSLSCASNCTCKWTNGKKSAICSSLQLTTIPNTLSTELQVLVLNDN 79

Query:    60 NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTF 119
             ++  L+ E+F  +GL+NLQ+IYL +  +  I  ++FR L  LV++D S N L+ +  DTF
Sbjct:    80 HIPYLNREEFSTLGLLNLQRIYLKKSEVQYIHKESFRNLKILVEIDLSDNKLEMLDKDTF 139

Query:   120 PDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLD 179
                  L  L L+GNP+K++    F  L +L TL++  C I  I+  +   L+ LE+L L 
Sbjct:   140 MGNDRLRILYLNGNPLKRLAAYQFPILPHLRTLDMHDCLISYIDPMSLANLNLLEFLNLK 199

Query:   180 NNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRL 238
             NN + ++S         L  + L  NPW C+C L   R W  +++   ++  +C  PP  
Sbjct:   200 NNLLESLSEYVFQHMANLKTLSLEENPWQCNCKLRKFRGWYVNSRLS-SVSLVCKGPPAQ 258

Query:   239 SSVTIKQLSIDEL-ACEP--QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPI 295
                T   +  DEL  C P  +I  +     I  G N +  C V   P  ++ W  +G  +
Sbjct:   259 KDRTWDSVD-DELFGCPPRVEIFNNEEVQNIDIGSNTTFSCLVYGDPLPEVAWELNGKIL 317

Query:   296 QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI 352
              N+++   ES ++ S +       S L ++N    D GT+ C   N  GS + N +I
Sbjct:   318 DNDNV-LFESESIASDKLW-----SNLTVFNVTSLDAGTYACTGSNSIGSMTQNISI 368

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0031016 kek5 "kekkon5" [Drosophila melanogaster (taxid:7227)]

 Score = 413 (150.4 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 97/346 (28%), Positives = 167/346 (48%)

Query:    15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
             + +C T C C+W  GK++ +C NK+L  + + M    QVLD+  N +  L  E+F   GL
Sbjct:    40 MQSCGT-CHCQWNSGKKSADCKNKALTKIPQDMSNEMQVLDFAHNQIPELRREEFLLAGL 98

Query:    75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
              N+ KI+L  C I  +  +AF+GL  L++LD S N ++ +   TF     L  + ++ N 
Sbjct:    99 PNVHKIFLRNCTIQEVHREAFKGLHILIELDLSGNRIRELHPGTFAGLEKLRNVIINNNE 158

Query:   135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI--L 192
             I+ +    F  LS+L  +E     +  ++   F G  +L  + L+ N+++ +       L
Sbjct:   159 IEVLPNHLFVNLSFLSRIEFRNNRLRQVQLHVFAGTMALSAISLEQNRLSHLHKETFKDL 218

Query:   193 PTGLHGIDLHHNPWTCDCLLIGLRRWLESTK--TPMAIDPICSVPPRLSSVTIKQLSIDE 250
                +H + L  N W C C L   R +  S +  TP   D  C  PP+L      ++  + 
Sbjct:   219 QKLMH-LSLQGNAWNCSCELQDFRDFAISKRLYTPPT-D--CQEPPQLRGKLWSEVPSEN 274

Query:   251 LACEPQITPST-FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309
              AC P+I  S   ++E     N+SL C++   P   +TW+++  P+Q          +V 
Sbjct:   275 FACRPRILGSVRSFIEANHD-NISLPCRIVGSPRPNVTWVYNKRPLQQYDPRVRVLTSVE 333

Query:   310 ST-EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                E+ +++  SEL I      D G + CVA+N+ G   + + + +
Sbjct:   334 QMPEQPSQVLTSELRIVGVRASDKGAYTCVADNRGGRAEAEFQLLV 379

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0030510 "regulation of BMP signaling pathway" evidence=IDA

FB|FBgn0032484 kek4 "kekkon4" [Drosophila melanogaster (taxid:7227)]

 Score = 404 (147.3 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 111/384 (28%), Positives = 188/384 (48%)

Query:     2 MYWIFLIATIIKIVSA-----CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDY 56
             ++ I+ +A I +  SA     C  +C CKW  GK+T +C N SL  V E + P  QVLD 
Sbjct:    21 LFKIYCLALIFRSASADWLLDCG-NCHCKWNSGKKTADCRNLSLSGVPEYLSPEVQVLDL 79

Query:    57 TGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS 116
             + N++  L    F    L NLQK+ +    +  ++ ++F  L  L++LD S+N+L  +  
Sbjct:    80 SHNHIFYLEENAFLTTHLQNLQKLLIRNGTLKYLNQRSFTQLQILIELDLSNNLLVDLLP 139

Query:   117 DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL 176
             + F     +  + L+GN ++ ++ G F+ L YL  +EL +  +  I+  AFVG+  L  +
Sbjct:   140 NVFDCLSKVRAIFLNGNLLQALRHGVFRNLKYLHKIELKRNRLVSIDAKAFVGVPLLSQI 199

Query:   177 KLDNNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPI-CSV 234
              LDNN++T +   +    T L  + L  NPW C C L   R ++      +   P  C  
Sbjct:   200 YLDNNELTKLRVESFQDLTKLTALSLVENPWNCTCDLQMFRDFVIGMN--LYTPPTSCHY 257

Query:   235 PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGK-NVSLLCKVSAIPEAKITWLFDGV 293
             P +L      +   +  AC+P+I   T    I   K NV+L+C+V   P   I W +   
Sbjct:   258 PLQLRGRLWIEDQPEAFACKPKIVYPTLSTSINTSKENVTLICRVHGSPNTVIAWDYTNQ 317

Query:   294 PIQNES--MSASESHAVYST---EEGTEIKK-------SELLIYNSNIDDNGTFVCVAEN 341
               ++ S  + + +   +Y     E+ ++I+K       S L I N+   D G + C+AEN
Sbjct:   318 VYESRSKPVKSLQKQRIYIELLREDESKIRKFGHDVFVSRLTIVNARKSDEGVYTCLAEN 377

Query:   342 QAGSTSSNYTIRIVLKE-ENVEVV 364
               G  S + ++ +V K+ E + ++
Sbjct:   378 PGGKDSVHISV-VVQKDMERISLI 400

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

ZFIN|ZDB-GENE-060503-496 lrrc24 "leucine rich repeat containing 24" [Danio rerio (taxid:7955)]

 Score = 348 (127.6 bits), Expect = 8.0e-29, P = 8.0e-29
 Identities = 86/292 (29%), Positives = 148/292 (50%)

Query:     5 IFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTL 64
             + ++A +     ACP+ C C       TVEC +  +  + +G+   TQ +    N +  +
Sbjct:    11 VLMLAQLCSTSLACPSGCRCY----SLTVECGSIGIKEIPQGITQGTQTIFLQDNAIGQI 66

Query:    65 HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPS 124
                    +G   L  +YL    IS ++  AFR L  L++L  + N +  + +D F     
Sbjct:    67 RQRDLSDLG--QLHYLYLQNNSISTLEPGAFRSLGLLLELALNGNRIHLITADVFRGLDH 124

Query:   125 LMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT 184
             L  L L+GN I +++   F+ L  L  L L +  +EV+ D A VGL SL  L L  N + 
Sbjct:   125 LRILYLAGNQINRLEDYTFRGLQRLQELHLQENVLEVLGDQALVGLSSLALLDLSRNNLR 184

Query:   185 TISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWL--ESTKTPMAIDP--ICSVPPRLS 239
             T+S +++ P   L  + +  NPW CDC L  LR W+  E  +   + +   +C+ PPRLS
Sbjct:   185 TLSPASLKPLVSLQVLRVTDNPWRCDCALHWLRGWINEEGQRLLSSAERRMLCAEPPRLS 244

Query:   240 SVTIKQLSIDELACEP---QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITW 288
              +++ ++  + L C P   Q+ PS  +L ++ G+++ + C+ S  P+ ++TW
Sbjct:   245 HLSLVEVPPNSLVCIPPVVQLEPS--HLTVRLGESLRVSCQASGYPQPQVTW 294

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q50LG9 LRRC24 "Leucine-rich repeat-containing protein 24" [Homo sapiens (taxid:9606)]

 Score = 320 (117.7 bits), Expect = 5.6e-26, P = 5.6e-26
 Identities = 97/351 (27%), Positives = 154/351 (43%)

Query:     7 LIATIIKIVSA-CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLH 65
             L+  ++ + +A CP +C C       TVEC    L  V  G+ P TQ L    NN+  L 
Sbjct:    11 LLLLLLPLRAAGCPAACRCY----SATVECGALRLRVVPLGIPPGTQTLFLQDNNIARL- 65

Query:    66 NEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSL 125
              E      L  L+++YL    +  +++ AFR    L++L  + N L+ + S  F     L
Sbjct:    66 -EPGALAPLAALRRLYLHNNSLRALEAGAFRAQPRLLELALTSNRLRGLRSGAFVGLAQL 124

Query:   126 MKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITT 185
               L L+GN + ++    F  L  L  L L +  IE++ED A  GL SL  L L  N++ T
Sbjct:   125 RVLYLAGNQLARLLDFTFLHLPRLQELHLQENSIELLEDQALAGLSSLALLDLSRNQLGT 184

Query:   186 ISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDP----ICSVPPRLSS 240
             IS   + P   L  + L  NPW CDC L  L  W++     +        +C+ PPRL+ 
Sbjct:   185 ISREALQPLASLQVLRLTENPWRCDCALHWLGAWIKEGGQRLLTSRDRKIMCAEPPRLAL 244

Query:   241 VTIKQLSIDELAC-EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNES 299
              ++  +S   L C  P +      L    G+++ + C+ S  P+  +TW    VP   E 
Sbjct:   245 QSLLDVSHSSLICIPPSVHVQPLELTANLGEDLRVACQASGYPQPLVTWR--KVPQPREG 302

Query:   300 MSASESHAV-----YSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345
                +++              ++     L + N  +   G + C A N  G+
Sbjct:   303 RPRAQAQLEGGLLGLGGHSASDTGSGMLFLSNITLAHAGKYECEASNAGGA 353

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:3605040 Lrrc24 "leucine rich repeat containing 24" [Mus musculus (taxid:10090)]

 Score = 315 (115.9 bits), Expect = 2.3e-25, P = 2.3e-25
 Identities = 100/343 (29%), Positives = 154/343 (44%)

Query:    16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
             + CP +C C       TVEC    L  V  G+ P TQ L    N++   H E+     L 
Sbjct:    29 TGCPAACRCY----SATVECGALRLRVVPPGIPPGTQTLFLQDNSIA--HLEQGSLAPLA 82

Query:    76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
              L+ +YL    +  ++S AFR    L++L  + N L+ +    F     L  L L+GN +
Sbjct:    83 ALRHLYLHNNTLRALESGAFRAQPRLLELALTGNRLRGLRGGAFVGLVQLRVLYLAGNQL 142

Query:   136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-T 194
              ++    F  L  L  L L +  IE++ED A  GL SL  L L  N++ TIS   + P +
Sbjct:   143 AKLLDFTFLHLPRLQELHLQENSIELLEDQALAGLSSLALLDLSRNQLGTISKEALQPLS 202

Query:   195 GLHGIDLHHNPWTCDCLLIGLRRWLES--TKTPMAIDP--ICSVPPRLSSVTIKQLSIDE 250
              L  + L  NPW CDC L  L  W++    +   + D    C+ PPRL+  ++ ++S   
Sbjct:   203 SLQVLRLTENPWRCDCALHWLGSWIKEGGRRLLSSRDKKITCAEPPRLALQSLLEVSGGS 262

Query:   251 LACEP---QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF-----DGVPIQNESMSA 302
             L C P    + P  F   +  G+++ + C+ S  P+  + W       DG P   ++ + 
Sbjct:   263 LICIPPSVNVEPPEFTANL--GEDLQVACQASGYPQPLVVWRKVPQPRDGKP---QAQAQ 317

Query:   303 SESHAVYSTEEGTEIKKSELL-IYNSNIDDNGTFVCVAENQAG 344
              E  A      GT    S +L + N  +   G + C A N  G
Sbjct:   318 LEGGAPGLGGHGTRDTGSGMLFLTNITLAHAGKYECEAANAGG 360

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P2C4 LRRC4C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 301 (111.0 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 94/330 (28%), Positives = 154/330 (46%)

Query:    32 TVECVNKSLITVVEGMDPNTQVLD--YTGNN-LKTLHNEKFQKMGLVNLQKIYLSRC-RI 87
             T+E  +  L T+  G       L   +  NN ++++ +  F +  + +L+++ L    R+
Sbjct:   105 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGELKRL 162

Query:    88 SVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS 147
             S I   AF GL+NL  L+ +   L+ +P+ T P    L +L LSGN +  I+ G+FQ L 
Sbjct:   163 SYISEGAFEGLSNLRYLNLAMCNLREIPNLT-P-LVKLDELDLSGNHLTAIRPGSFQGLM 220

Query:   148 YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
             +L  L + +  I+VIE  AF  L SL  + L +N +T +      P  L  I LHHNPW 
Sbjct:   221 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLRLERIHLHHNPWN 280

Query:   208 CDCLLIGLRRWLESTKTPM--AIDPICSVPPRLSSVTIKQLSIDELAC-EPQITPSTFYL 264
             C+C ++ L  W++  K P   A    C  PP L    I +L ++   C  P I      L
Sbjct:   281 CNCDILWLSWWIKD-KAPSNTACCARCHTPPSLKGRYIGELDLNYFTCYAPVIVEPPADL 339

Query:   265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
              + EG    + C+ S      ++W+    P  N S+    +H  Y       +    L  
Sbjct:   340 NVTEGMAAEMKCRAST-SLTSVSWI---TP--NGSVM---THGAYRVRIAV-LSDGTLNF 389

Query:   325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                 + D G + C+  N  G+T+++ T+ +
Sbjct:   390 TKVTVQDTGLYTCMVSNSVGNTTASATLNV 419

GO:0016021 "integral to membrane" evidence=IEA

GO:0050770 "regulation of axonogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	767
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-13
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-13
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-12
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-10
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-10
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-09
smart00409	85	smart00409, IG, Immunoglobulin	4e-09
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	2e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-08
cd05759	82	cd05759, Ig2_KIRREL3-like, Second immunoglobulin (	1e-06
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	1e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	3e-06
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	4e-06
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	7e-06
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	1e-05
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	3e-05
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	9e-05
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	4e-04
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	4e-04
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	4e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	5e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	7e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	8e-04
pfam08205	89	pfam08205, C2-set_2, CD80-like C2-set immunoglobul	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	0.001
cd05865	96	cd05865, Ig1_NCAM-1, First immunoglobulin (Ig)-lik	0.001
cd04970	85	cd04970, Ig6_Contactin_like, Sixth Ig domain of co	0.001
smart00082	51	smart00082, LRRCT, Leucine rich repeat C-terminal	0.001
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	0.002
cd05866	92	cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-lik	0.002
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	0.002
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.003
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	0.003
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.004

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 27/60 (45%), Positives = 36/60 (60%)

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
           NL+ + LS  R++VI   AF+GL NL  LD S N L ++  + F   PSL  L LSGN +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 63.3 bits (155), Expect = 8e-13
 Identities = 24/60 (40%), Positives = 30/60 (50%)

Query: 124 SLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI 183
           +L  L LS N +  I  GAF+ L  L  L+LS   +  I   AF GL SL  L L  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           +E+QEG++    C V+  P+  ++W  DG P++      S      + E GT      L 
Sbjct: 10  VEVQEGESARFTCTVTGDPDPTVSWFKDGQPLR------SSDRFKVTYEGGT----YTLT 59

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSS 348
           I N   DD G + CVA N AG   +
Sbjct: 60  ISNVQPDDEGKYTCVATNSAGEAEA 84

Length = 90

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 57.9 bits (141), Expect = 7e-11
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 50  NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109
           N + LD + N L  + +  F+  GL NL+ + LS   ++ I  +AF GL +L  LD S N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFK--GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 110 VL 111
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 57.1 bits (137), Expect = 2e-10
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDD 331
           V+L C  S  P   ITWL +G P+       S       +  GT    S L I N  ++D
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLP------SSVLTRVRSSRGTSSGSSTLTISNVTLED 54

Query: 332 NGTFVCVAENQAGSTSSNYT 351
           +GT+ CVA N AG+ S++ T
Sbjct: 55  SGTYTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 14/77 (18%)

Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
           EG++V+L C     P   ITWL DG P+   +                    S L I + 
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPLPESN--------------RFVASGSTLTIKSV 46

Query: 328 NIDDNGTFVCVAENQAG 344
           +++D+G + CVAEN AG
Sbjct: 47  SLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 13/93 (13%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQNESMSASESHAVYSTEEGTEIKKSE 321
           + ++EG++V+L C+ S  P  ++TW   G  +  ++   S S S              S 
Sbjct: 4   VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSG-----------STST 52

Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           L I N   +D+GT+ C A N +GS SS  T+ +
Sbjct: 53  LTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 13/93 (13%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQNESMSASESHAVYSTEEGTEIKKSE 321
           + ++EG++V+L C+ S  P  ++TW   G  +  ++   S S S              S 
Sbjct: 4   VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSG-----------STST 52

Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           L I N   +D+GT+ C A N +GS SS  T+ +
Sbjct: 53  LTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
           G++V+L C     PE  +TW  DG PI++           YS  E      SE+ I + +
Sbjct: 18  GQSVTLACDADGFPEPTMTWTKDGEPIESGEEK-------YSFNE----DGSEMTILDVD 66

Query: 329 IDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
             D   + C+AEN+AG   +   +++  K
Sbjct: 67  KLDEAEYTCIAENKAGEQEAEIHLKVFAK 95

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.0 bits (132), Expect = 7e-08
 Identities = 37/177 (20%), Positives = 71/177 (40%), Gaps = 3/177 (1%)

Query: 30  KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV 89
            +    ++ + + ++         LD    +  +  +     + L+ L  + L+  R+  
Sbjct: 48  NRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRS 107

Query: 90  IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYL 149
             S+    LTNL  LD  +N +  +P        +L +L LS N I+ + +      + L
Sbjct: 108 NISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPN-L 165

Query: 150 VTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPW 206
             L+LS   +  +       L +L  L L  NKI+ +     L + L  +DL +N  
Sbjct: 166 KNLDLSFNDLSDLPKLLS-NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.1 bits (118), Expect = 8e-08
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 11/63 (17%)

Query: 149 LVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHG------IDLH 202
           L +L+LS   + VI D AF GL +L+ L L  N +T+IS     P    G      +DL 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-----PEAFSGLPSLRSLDLS 56

Query: 203 HNP 205
            N 
Sbjct: 57  GNN 59

Length = 60

>gnl|CDD|143236 cd05759, Ig2_KIRREL3-like, Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 274 LLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTE---EGT-EIKKSELLIYNSN 328
           L C+   A P A+I W  DG  +           A YS E   +G  E   S L I  S+
Sbjct: 4   LTCRARGAKPAAEIIWFRDGEVLDG---------ATYSKELLKDGKRETTVSTLPITPSD 54

Query: 329 IDDNGTFVCVAENQA 343
            D   TF C A N+A
Sbjct: 55  HDTGRTFTCRARNEA 69

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 82

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
           Q+       EI  G++   LC+V   P+  I+W         E +   +  +V   ++  
Sbjct: 2   QVDIVPSQGEISVGESKFFLCQVIGEPK-DISW----FSPNGEKLVTQQQISVVQNDDVR 56

Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
               S L IYN+NI+D G + CVA +  G+ S
Sbjct: 57  ----STLTIYNANIEDAGIYKCVATDAKGTES 84

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 22/97 (22%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           +P +TPS     + EG++V+L C     P    TW  DGVP+       S S        
Sbjct: 1   KPVLTPS--PTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPL-------SSSQ------- 44

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY 350
                 +     N + +D+GT+ CVA N  G  +SN 
Sbjct: 45  ------NGFFTPNVSAEDSGTYTCVASNGGGGKTSNP 75

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE--LLIYN 326
           G  V L C  S  P   ITWL DG P + E               G +++K +  L++ +
Sbjct: 9   GSTVRLKCPASGNPRPTITWLKDGKPFKKE-----------HRIGGYKVRKKKWTLILES 57

Query: 327 SNIDDNGTFVCVAENQAGSTSSNYTIRI 354
               D+G + C+ EN+ GS +  Y + +
Sbjct: 58  VVPSDSGKYTCIVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 16/97 (16%)

Query: 258 TPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEI 317
             S    +I  G ++   CK S  P     WL +G P+              ++E   E+
Sbjct: 5   VISDTEADI--GSSLRWECKASGNPRPAYRWLKNGQPL--------------ASENRIEV 48

Query: 318 KKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           +  +L I   ++ D+G + CVAEN+ G+  ++  + +
Sbjct: 49  EAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
           G+  S  C V+  P  +ITW  +      E++    +H V      T I   +L+IYN+ 
Sbjct: 1   GETASFHCDVTGRPPPEITW--EKQVHGKENLIMRPNH-VRGNVVVTNI--GQLVIYNAQ 55

Query: 329 IDDNGTFVCVAENQAGSTSSNYTIRI 354
             D G + C A N  G   +N+ + +
Sbjct: 56  PQDAGLYTCTARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDD 331
           V + C     PE  ITW  DGV +       +ES   + + EG       L I +  + D
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQV-------TESGKFHISPEGY------LAIRDVGVAD 47

Query: 332 NGTFVCVAENQAGSTSS 348
            G + CVA N  G  S 
Sbjct: 48  QGRYECVARNTIGYASV 64

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
           +L  I +    ++ I   AF G T+L  +    + L ++ S  F +  SL  +T+  + +
Sbjct: 12  SLTSITIPS-SVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIPSS-L 68

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS 187
             I   AF   S L ++ +    +  I   AF    SL+ + + ++ +TTI 
Sbjct: 69  TSIGEYAFSNCSSLTSITIPS-NLTTIGSYAFSNC-SLKSITIPSS-VTTIG 117

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 271 NVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNID 330
           +V L   +S  P   +TW  DG P++       E+ A  ++          L+I N+   
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTS----------LVIKNAERS 50

Query: 331 DNGTFVCVAENQAGSTSSNYTIRI 354
           D+G +    +N AG  S+   +++
Sbjct: 51  DSGKYTLTLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 281 IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE 340
            PE  ++W  DG P+  ++                 +    LLI  +   D GT+ CVA 
Sbjct: 24  HPEPTVSWRKDGQPLNLDNERV------------RIVDDGNLLIAEARKSDEGTYKCVAT 71

Query: 341 NQAGSTSSNY 350
           N  G   S  
Sbjct: 72  NMVGERESAA 81

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           L + EG++    C V   P   +TW+ +G  I      +S+ H + STE      KS   
Sbjct: 13  LTVSEGESARFSCDVDGEPAPTVTWMREGQII-----VSSQRHQITSTE-----YKSTFE 62

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTI 352
           I    + D G +  V EN  G   + +T+
Sbjct: 63  ISKVQMSDEGNYTVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
           I EGK ++L C V   P+ +++WL      +N+   A   H     E+G   K + L I 
Sbjct: 13  IMEGKTLNLTCTVFGDPDPEVSWL------KNDQALALSDHYNVKVEQG---KYASLTIK 63

Query: 326 NSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
             + +D+G +  V +N+ G  + + T+ +
Sbjct: 64  GVSSEDSGKYGIVVKNKYGGETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
           G+   L C+   IP+  ITW  +GVPI+               +    +    L++ N  
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEEL-----------PPDPRRRVDGGTLILSNVQ 49

Query: 329 IDDNGTFVCVAENQAG 344
            +D   + C A N  G
Sbjct: 50  PNDTAVYQCNASNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 12/83 (14%)

Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDG-VPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
           + EG   ++ C     P  K+ W+  G + IQ  + +   +  +Y+           L +
Sbjct: 12  VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYN-----------LQL 60

Query: 325 YNSNIDDNGTFVCVAENQAGSTS 347
            N   +   T  C AEN  G  +
Sbjct: 61  SNITSETQTTVTCTAENPVGQAN 83

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
           G +V+L C VS  P+  +TW  +G  ++       ES  V + E    +    L I N  
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLE-------ESTTVGTDE--NRVSSITLTISNVT 51

Query: 329 IDDNGTFVCVA 339
            +D+GT+ CV 
Sbjct: 52  PEDSGTYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 14/87 (16%)

Query: 269 GKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
           G+  +L CK    PE  I W+  DG  I N S +      VY  + GT      L I  +
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTL-----VY--DNGT------LDILIT 47

Query: 328 NIDDNGTFVCVAENQAGSTSSNYTIRI 354
            + D G+F C+A N AG  ++   + I
Sbjct: 48  TVKDTGSFTCIASNAAGEATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 10/79 (12%)

Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESH-AVYSTEEGTEIKKSELLIYNSNID 330
           V L C+VSAIP  +I W  +     NE ++ +    ++Y    G    +  LLI N+N +
Sbjct: 1   VRLECRVSAIPPPQIFWKKN-----NEMLTYNTDRISLYQDNCG----RICLLIQNANKE 51

Query: 331 DNGTFVCVAENQAGSTSSN 349
           D G +   A N+AG  S N
Sbjct: 52  DAGWYTVSAVNEAGVVSCN 70

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|219745 pfam08205, C2-set_2, CD80-like C2-set immunoglobulin domain

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 22/95 (23%), Positives = 29/95 (30%), Gaps = 7/95 (7%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P I P    L   E   V   C  +   P  +ITW  DG       + A  + +    E 
Sbjct: 1   PTIEPPV-SLLEGENLEVVATCSSAGGKPAPRITWYLDGRE-----LEAITTSSEQDPES 54

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
           G     S L +  S  D   +  C     A     
Sbjct: 55  GLYTVTSTLKLVPSREDHGRSLTCQVSYGALRGQK 89

These domains belong to the immunoglobulin superfamily. Length = 89

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 8/57 (14%)

Query: 36 VNKSLITVVE-----GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRI 87
          ++ + +TV+      G+ PN +VLD +GNNL ++  E F   GL +L+ + LS   +
Sbjct: 7  LSNNRLTVIPDGAFKGL-PNLKVLDLSGNNLTSISPEAFS--GLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 17/79 (21%)

Query: 273 SLLCKVSAIPEAKITWLFDGVPIQ---NESMSASESHAVYSTEEGTEIKKSELLIYNSNI 329
           ++LC  S  P+ +ITW  D +P+    N  +    S A              L I NS  
Sbjct: 2   TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGA--------------LQIENSEE 47

Query: 330 DDNGTFVCVAENQAGSTSS 348
            D G + CVA N AG+  S
Sbjct: 48  SDQGKYECVATNSAGTRYS 66

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 34/153 (22%), Positives = 51/153 (33%), Gaps = 29/153 (18%)

Query: 60  NLKTLHNEKFQKMGL-----------VNLQKIYLSRCRISVID----SKAFRGLTNLVDL 104
            LK L+N      GL             L+K+ L R R+        +KA R   +L +L
Sbjct: 112 ELK-LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170

Query: 105 DFSHNVLQ----TVPSDTFPDYPSLMKLTLSGNPIK----QIKTGAFQPLSYLVTLELSK 156
           + ++N +        ++      +L  L L+ N +              L  L  L L  
Sbjct: 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230

Query: 157 C-----GIEVIEDAAFVGLDSLEWLKLDNNKIT 184
                 G   +  A      SL  L L  N IT
Sbjct: 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 13/80 (16%)

Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
           G +V + CK  A P+  I+W      + N S        +    +G+      L I N  
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSS-------RICIWPDGS------LEILNVT 47

Query: 329 IDDNGTFVCVAENQAGSTSS 348
             D G + C AEN  G  +S
Sbjct: 48  KSDEGKYTCFAENFFGKANS 67

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143273 cd05865, Ig1_NCAM-1, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 265 EIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           EI  G++   LC+V+   + K I+W     P   +     +  +V   ++ +    S L 
Sbjct: 11  EISVGESKFFLCQVAGEAKDKDISWF---SPNGEKLTPNQQRISVVRNDDYS----STLT 63

Query: 324 IYNSNIDDNGTFVCVAENQAGSTS 347
           IYN+NIDD G + CV  N+    S
Sbjct: 64  IYNANIDDAGIYKCVVSNEDEGES 87

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 96

>gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 271 NVSLLCKVSAIPEAKIT--WLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
           +++L C  S  P   +T  W F+GVPI          H  Y    G +    +L+I N+ 
Sbjct: 2   SITLQCHASHDPTLDLTFTWSFNGVPI---DFDKDGGH--YRRVGGKD-SNGDLMIRNAQ 55

Query: 329 IDDNGTFVCVAENQAGSTSSNYTIRI 354
           +   G + C A+    S S++  + +
Sbjct: 56  LKHAGKYTCTAQTVVDSLSASADLIV 81

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neur onal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 85

>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 204 NPWTCDCLLIGLRRWLESTK-TPMAIDPICSVPPRLSSVTIKQLSIDELAC 253
           NP+ CDC L  L RWL++ +     +D  C+ P  L    + +L   E  C
Sbjct: 1   NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLRGP-LLELLHSEFKC 50

Length = 51

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKK 319
            T + E  +   VSL C+    P     WL +G  I +E     +S   YS   G     
Sbjct: 10  DTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDE----PDSR--YSLVGGN---- 59

Query: 320 SELLIYN-SNIDDNGTFVCVAENQAGSTSS 348
             L+I N S   D G + C+A N  G+  S
Sbjct: 60  --LVISNPSKAKDAGRYQCLASNIVGTVLS 87

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143274 cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
           Q++ S   +E+  G++    C     PE  I W       Q E + +S+   V   +EG 
Sbjct: 2   QVSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNP----QGEKIVSSQRVVVQ--KEGV 54

Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGST 346
              +S L IYN+NI+D G + C A +  G T
Sbjct: 55  ---RSRLTIYNANIEDAGIYRCQATDAKGQT 82

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 92

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 274 LLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG 333
           L C  +  P  +I W  DG     +  +A E       E+          I +  I+D G
Sbjct: 3   LECAATGHPTPQIAWQKDG---GTDFPAARERRMHVMPED------DVFFIVDVKIEDTG 53

Query: 334 TFVCVAENQAGSTSSNYTIRIV 355
            + C A+N AGS S+N T+ ++
Sbjct: 54  VYSCTAQNTAGSISANATLTVL 75

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 11/87 (12%)

Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
           G+   L C+V  IP   ITW  +G PI                +    +    L++ +  
Sbjct: 1   GETARLDCQVEGIPTPNITWSINGAPI-----------EGTDPDPRRHVSSGALILTDVQ 49

Query: 329 IDDNGTFVCVAENQAGSTSSNYTIRIV 355
             D   + C A N+ G+  +N  + +V
Sbjct: 50  PSDTAVYQCEARNRHGNLLANAHVHVV 76

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS 116
           NL+ + LS  +I+ +       L NL  LD S N +  +  
Sbjct: 2   NLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 273 SLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDN 332
           SL C    IP  ++TWL +G+ I  +           S +       SEL I N   +D 
Sbjct: 2   SLRCHAEGIPLPRLTWLKNGMDITPK----------LSKQLTLIANGSELHISNVRYEDT 51

Query: 333 GTFVCVAENQAGST 346
           G + C+A+N+AG  
Sbjct: 52  GAYTCIAKNEAGVD 65

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 16/88 (18%)

Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
           G +V L C  S  P   ITWL D  P+              +  E  E +K +  +   N
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPL--------------TPTEIGESRKKKWTLSLKN 54

Query: 329 I--DDNGTFVCVAENQAGSTSSNYTIRI 354
           +  +D+G + C   N+AG  ++ Y + +
Sbjct: 55  LKPEDSGKYTCHVSNRAGEINATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDD 331
           V+L C +   P     W  DG P+       S+    YS       K+  L + ++  DD
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPL-------SDGQGNYSVSS----KERTLTLRSAGPDD 49

Query: 332 NGTFVCVAENQAGS--TSSNYTIRIV 355
           +G + C A N  GS  +S N+T+ I+
Sbjct: 50  SGLYYCCAHNAFGSVCSSQNFTLSII 75

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	767
KOG4194|consensus	873		99.97
KOG4237|consensus	498		99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
KOG4194|consensus	873		99.83
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.57
KOG4237|consensus	498		99.49
KOG0444|consensus	1255		99.46
KOG0617|consensus	264		99.44
KOG0617|consensus	264		99.43
KOG0444|consensus	1255		99.37
KOG0472|consensus	565		99.34
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.32
KOG0472|consensus	565		99.3
KOG0618|consensus	1081		99.29
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.27
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.24
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.23
PLN03150	623	hypothetical protein; Provisional	99.2
KOG0618|consensus	1081		99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
PLN03150	623	hypothetical protein; Provisional	98.97
KOG0532|consensus	722		98.9
KOG1259|consensus	490		98.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.86
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.85
KOG0532|consensus	722		98.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.75
KOG1259|consensus	490		98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.67
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.57
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.56
KOG1187|consensus	361		98.54
KOG3207|consensus	505		98.5
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.49
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.48
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.45
KOG1859|consensus	1096		98.45
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.44
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.42
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.42
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.4
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.4
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.36
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.35
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.35
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.34
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.33
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.33
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.32
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.32
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.3
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.3
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.3
KOG3207|consensus	505		98.29
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.29
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.29
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.28
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.28
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.27
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.26
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.25
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.25
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.25
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.24
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.24
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.24
KOG0531|consensus	414		98.23
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.22
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.22
KOG4579|consensus	177		98.22
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.21
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.2
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.2
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.19
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.18
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.18
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.17
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.15
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.14
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.14
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.13
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.13
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.12
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.12
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.11
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.11
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.11
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.11
KOG0531|consensus	414		98.1
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.1
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.1
KOG1909|consensus	382		98.1
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.09
KOG1859|consensus	1096		98.05
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.02
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.01
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.0
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	97.95
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.94
KOG1644|consensus	233		97.93
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	97.9
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	97.88
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	97.88
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.86
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.86
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	97.86
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	97.85
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	97.84
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.83
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	97.83
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	97.82
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	97.8
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	97.79
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	97.77
KOG4579|consensus	177		97.77
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	97.76
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	97.72
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	97.69
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.67
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	97.64
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	97.62
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.59
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.59
KOG1644|consensus	233		97.58
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	97.55
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.55
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.54
KOG4658|consensus	889		97.52
KOG1026|consensus	774		97.52
KOG4658|consensus	889		97.52
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.49
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.45
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	97.44
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.41
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	97.34
KOG1909|consensus	382		97.31
KOG3513|consensus	1051		97.3
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.29
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.29
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.28
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.27
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.22
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.18
KOG3653|consensus	534		97.18
PRK15386	426	type III secretion protein GogB; Provisional	97.11
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.1
KOG3665|consensus	699		97.09
PRK15386	426	type III secretion protein GogB; Provisional	97.03
KOG1025|consensus	1177		97.0
KOG2982|consensus	418		96.96
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	96.95
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	96.87
KOG2739|consensus	260		96.87
KOG0196|consensus	996		96.85
KOG3513|consensus	1051		96.85
KOG2120|consensus	419		96.8
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	96.79
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	96.77
smart00409	86	IG Immunoglobulin.	96.77
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	96.77
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	96.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.58
PF00047	64	ig: Immunoglobulin domain The Prosite family only	96.58
KOG2123|consensus	388		96.56
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	96.54
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	96.52
PHA02785	326	IL-beta-binding protein; Provisional	96.51
KOG4221|consensus	1381		96.5
KOG2982|consensus	418		96.46
KOG2739|consensus	260		96.45
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	96.36
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	96.28
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	96.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.22
KOG3665|consensus	699		96.13
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	96.08
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	96.08
PHA02826	227	IL-1 receptor-like protein; Provisional	96.04
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.02
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	95.89
KOG2123|consensus	388		95.82
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	95.8
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	95.77
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	95.75
PHA02826	227	IL-1 receptor-like protein; Provisional	95.68
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	95.67
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	95.67
KOG2052|consensus	513		95.64
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	95.54
PHA02785	326	IL-beta-binding protein; Provisional	95.35
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	95.27
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	95.21
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	95.16
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	95.15
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	95.11
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	95.03
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	94.99
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	94.94
KOG0593|consensus	396		94.87
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	94.65
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	94.64
KOG2120|consensus	419		94.35
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	94.33
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	94.26
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	94.1
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	94.08
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	93.66
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	93.62
KOG4221|consensus	1381		93.55
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	93.44
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	93.43
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	93.24
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	93.11
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	93.09
KOG0663|consensus	419		92.74
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	92.69
PHA02987	189	Ig domain OX-2-like protein; Provisional	92.62
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	92.47
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	92.46
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	92.09
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	91.78
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	91.73
PLN03224	507	probable serine/threonine protein kinase; Provisio	91.68
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	91.64
KOG0193|consensus	678		91.03
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	90.96
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	90.56
KOG0595|consensus	429		90.14
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	90.12
KOG4222|consensus	1281		90.07
KOG0597|consensus	808		89.99
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	89.95
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	89.94
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	89.64
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	89.57
KOG0659|consensus	318		89.39
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	89.37
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	89.34
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	89.17
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	89.04
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	88.88
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	88.77
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	88.76
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	88.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	88.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.48
KOG0658|consensus	364		88.47
KOG0574|consensus	502		88.12
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	88.06
PTZ00284	467	protein kinase; Provisional	88.06
KOG0662|consensus	292		87.97
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	87.91
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	87.71
KOG0201|consensus	467		87.62
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	87.59
PRK09188	365	serine/threonine protein kinase; Provisional	87.54
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	87.43
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	87.3
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	87.3
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	87.02
PF15102	146	TMEM154: TMEM154 protein family	87.0
KOG0594|consensus	323		86.96
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	86.89
smart00407	75	IGc1 Immunoglobulin C-Type.	86.62
KOG0600|consensus	560		86.61
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	86.59
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.55
smart00370	26	LRR Leucine-rich repeats, outliers.	86.55
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	86.07
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	86.02
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	85.77
KOG4308|consensus	478		85.58
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	85.56
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	85.36
KOG1166|consensus	974		85.22
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	85.13
KOG4222|consensus	1281		85.12
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	85.09
KOG0661|consensus	538		84.98
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	84.89
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	84.72
PHA02882	294	putative serine/threonine kinase; Provisional	84.71
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	84.6
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	84.51
KOG4236|consensus	888		84.22
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	84.19
smart00370	26	LRR Leucine-rich repeats, outliers.	83.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.97
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	83.92
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	83.72
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	83.65
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	83.56
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	83.38
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	83.34
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	83.28
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	83.26
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	83.12
PTZ00036	440	glycogen synthase kinase; Provisional	83.04
smart00406	81	IGv Immunoglobulin V-Type.	82.97
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	82.92
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	82.92
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	82.77
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	82.77
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	82.66
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	82.53
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	82.49
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	82.47
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	82.42
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	82.38
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	82.35
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	82.33
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	82.33
KOG0473|consensus	326		82.28
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	82.21
PLN00034	353	mitogen-activated protein kinase kinase; Provision	82.2
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	82.18
PTZ00283	496	serine/threonine protein kinase; Provisional	82.16
KOG0577|consensus	948		82.02
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	81.9
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	81.74
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	81.66
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	81.61
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	81.58
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	81.55
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	81.54
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	81.53
PHA03376	221	BARF1; Provisional	81.5
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	81.47
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	81.46
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	81.43
KOG0591|consensus	375		81.42
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	81.4
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	81.25
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	81.23
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	81.2
KOG1006|consensus	361		81.06
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	81.04
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	80.96
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	80.92
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	80.86
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	80.77
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	80.76
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	80.74
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	80.64
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	80.59
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	80.57
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	80.57
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	80.49
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	80.42
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	80.28
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	80.18
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	80.18
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	80.14
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	80.08

>KOG4194|consensus

Probab=99.97  E-value=1.2e-31  Score=291.40  Aligned_cols=324  Identities=26%  Similarity=0.401  Sum_probs=264.4

Q ss_pred             eeEEEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044         30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF  106 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L  106 (767)
                      ..+++...+++..+-.+-   +..|+.|+||.|.|..+....+..  .++|+.|+|++|+|+.+.++.|..|..|++|+|
T Consensus       271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf--tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL  348 (873)
T KOG4194|consen  271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF--TQKLKELDLSSNRITRLDEGSFRVLSQLEELNL  348 (873)
T ss_pred             cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh--cccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence            345666666666665433   467788888888888888777764  678888888888888888888888888888888


Q ss_pred             cCCCCCCCCCCCCCCCCCCcEEECCCCcCccccc---CCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcc
Q psy12044        107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT---GAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI  183 (767)
Q Consensus       107 s~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~---~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~L  183 (767)
                      +.|+|+.+-..+|..+.+|+.|+|++|.|+..+.   ..|.+|++|+.|+|.+|+|+.++..+|.++..|+.|||.+|.|
T Consensus       349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence            8888888888888889999999999999887664   3578899999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccCC----CCCCC
Q psy12044        184 TTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE----PQITP  259 (767)
Q Consensus       184 t~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C~----P~i~~  259 (767)
                      .+|.+..|....|+.|.+..-.|.|||.+.|+.+|+.....+......|+.|+.+.++.+..++..++.|.    |.+..
T Consensus       429 aSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~lvC~DspkpqI~~  508 (873)
T KOG4194|consen  429 ASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTANLVCDDSPKPQIVT  508 (873)
T ss_pred             eeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhhceecCCCCcceec
Confidence            99998888877999999999999999999999999999988877888999999999999999999999998    55556


Q ss_pred             Cccceeecccccccccccccc--cCCCcEEEeecCeeccCCCcccccccceee----cccCcceeeeEEEEeeeccCCCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSA--IPEAKITWLFDGVPIQNESMSASESHAVYS----TEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g--~P~p~itW~~~g~~l~~~s~~~~~~~~~~~----~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      .+..+....|.++++.|.+.+  .....+.|.++......... .+..+....    ...+..++.+.|++.|+...|+|
T Consensus       509 qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~v-ed~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~g  587 (873)
T KOG4194|consen  509 QPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDV-EDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEG  587 (873)
T ss_pred             CchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccch-hcchhhhhhhccCccchhhhhhheeeeeeeecccCc
Confidence            666777889999999999987  45668999986653222111 111111111    11334556788999999999999


Q ss_pred             ceeEeeccCCCCccc-ceEEEEEe
Q psy12044        334 TFVCVAENQAGSTSS-NYTIRIVL  356 (767)
Q Consensus       334 tY~CvA~N~~G~s~~-s~sL~V~~  356 (767)
                      .|.|++.|.+|+..+ .+.+.|..
T Consensus       588 rYQCVvtN~FGStysqk~KltV~~  611 (873)
T KOG4194|consen  588 RYQCVVTNHFGSTYSQKAKLTVNQ  611 (873)
T ss_pred             eEEEEEecccCcchhheeEEEeec
Confidence            999999999999987 46666654

>KOG4237|consensus

Probab=99.95  E-value=2.8e-29  Score=263.22  Aligned_cols=239  Identities=30%  Similarity=0.551  Sum_probs=209.0

Q ss_pred             HhhhccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc
Q psy12044         11 IIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI   90 (767)
Q Consensus        11 ~~~~~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i   90 (767)
                      +...+.+||.+|.|+..+ ...|+|++.+|.+||.++|+..+.|+|..|.|+.|++.+|..  +.+|+.|+|++|.|+.|
T Consensus        30 C~~~~~~CP~pC~Cs~~~-g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~--l~~LRrLdLS~N~Is~I  106 (498)
T KOG4237|consen   30 CAHSASACPAPCTCSDVE-GGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKT--LHRLRRLDLSKNNISFI  106 (498)
T ss_pred             hhhccccCCCCcccCCCC-CceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccc--hhhhceecccccchhhc
Confidence            444567999999998765 578999999999999999999999999999999999999995  99999999999999999


Q ss_pred             CcccccCCCCCCEEEccC-CCCCCCCCCC---------------------------------------------------
Q psy12044         91 DSKAFRGLTNLVDLDFSH-NVLQTVPSDT---------------------------------------------------  118 (767)
Q Consensus        91 ~p~~f~~L~~L~~L~Ls~-N~Lt~l~p~~---------------------------------------------------  118 (767)
                      .|++|.++.+|..|-+-+ |+|+.++.+.                                                   
T Consensus       107 ~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~  186 (498)
T KOG4237|consen  107 APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQG  186 (498)
T ss_pred             ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccc
Confidence            999999999888776665 8788766332                                                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy12044        119 --------------------------------------------------------------------------------  118 (767)
Q Consensus       119 --------------------------------------------------------------------------------  118 (767)
                                                                                                      
T Consensus       187 l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP  266 (498)
T KOG4237|consen  187 LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICP  266 (498)
T ss_pred             hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcCh
Confidence                                                                                            


Q ss_pred             ---CCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCC-CC
Q psy12044        119 ---FPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL-PT  194 (767)
Q Consensus       119 ---f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~-~~  194 (767)
                         |..|++|+.|+|++|+|+.+.+.+|.++..|+.|.|..|+|..+...+|.++..|+.|+|.+|+|+.+.+..|. ..
T Consensus       267 ~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  267 AKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             HHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence               22356788888888888888888888888888888888888888888888999999999999999988777664 47


Q ss_pred             CcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccCC
Q psy12044        195 GLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE  254 (767)
Q Consensus       195 ~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C~  254 (767)
                      +|..|.|-.|||.|+|++.|+..|+++..  ...++.|..|..+++.++.++...++.|.
T Consensus       347 ~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~--~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~  404 (498)
T KOG4237|consen  347 SLSTLNLLSNPFNCNCRLAWLGEWLRKKS--VVGNPRCQSPGFVRQIPISDVAFGDFRCG  404 (498)
T ss_pred             eeeeeehccCcccCccchHHHHHHHhhCC--CCCCCCCCCCchhccccchhccccccccC
Confidence            89999999999999999999999999876  56789999999999999999999999997

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=7.2e-22  Score=245.55  Aligned_cols=174  Identities=19%  Similarity=0.150  Sum_probs=144.3

Q ss_pred             eEEEecCCCcc-ccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044         31 QTVECVNKSLI-TVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS  107 (767)
Q Consensus        31 ~~v~C~~~~L~-~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls  107 (767)
                      ..++..++.+. .+|..+  .++|+.|+|++|.+++..+..|..  +++|+.|+|++|.+++..+..+..+++|+.|+|+
T Consensus       383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  460 (968)
T PLN00113        383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK--LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA  460 (968)
T ss_pred             CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc--CCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence            34555555554 455443  578999999999999888888874  8899999999999999888888889999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccc-c
Q psy12044        108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITT-I  186 (767)
Q Consensus       108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~-i  186 (767)
                      +|.+.+..|..+ .+.+|+.|+|++|++++..+..|..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++ +
T Consensus       461 ~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        461 RNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI  539 (968)
T ss_pred             CceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence            999988877765 45889999999999998888888889999999999999998888888889999999999999985 4


Q ss_pred             cCCCCCCCCcccccCCCCCCC
Q psy12044        187 SGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       187 p~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |..+..+++|+.|+|++|.+.
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~  560 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLS  560 (968)
T ss_pred             ChhHhCcccCCEEECCCCccc
Confidence            455556788999999999886

>KOG4194|consensus

Probab=99.83  E-value=3.8e-21  Score=210.07  Aligned_cols=316  Identities=24%  Similarity=0.366  Sum_probs=220.9

Q ss_pred             EEecCCCccccc---cCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         33 VECVNKSLITVV---EGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        33 v~C~~~~L~~iP---~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      ++.+.+.+..|-   ..+..+|.+|+|+.|+|+.+++..|..  |..|+.|+|+.|+|..+...+|.++.+|+.|||++|
T Consensus       298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~--L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV--LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             hccchhhhheeecchhhhcccceeEeccccccccCChhHHHH--HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence            445555555443   245689999999999999999999984  899999999999999999999999999999999999


Q ss_pred             CCCCCCCC---CCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCc----
Q psy12044        110 VLQTVPSD---TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNK----  182 (767)
Q Consensus       110 ~Lt~l~p~---~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~----  182 (767)
                      .|+..+.+   .|..|++|+.|+|.+|+|..++..+|.++.+|+.|||.+|.|..+.+++|..+ .|+.|.+..-+    
T Consensus       376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD  454 (873)
T KOG4194|consen  376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD  454 (873)
T ss_pred             eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEe
Confidence            99876543   58889999999999999999999999999999999999999999999999988 88888776432    


Q ss_pred             --cccccC-------------CCCCCCC---cccccCCCCCCCchhhhhh------------------------------
Q psy12044        183 --ITTISG-------------SNILPTG---LHGIDLHHNPWTCDCLLIG------------------------------  214 (767)
Q Consensus       183 --Lt~ip~-------------~~~~~~~---L~~L~Ls~N~l~C~c~l~~------------------------------  214 (767)
                        |.=++.             ....+..   ...+.+.--.|.|+-...+                              
T Consensus       455 Cql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~sssasp  534 (873)
T KOG4194|consen  455 CQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTANLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASP  534 (873)
T ss_pred             ccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhhceecCCCCcceecCchHhhhhhccceEEEEEeccCCCCC
Confidence              211110             0111111   1223334444555411111                              


Q ss_pred             h-hhhhccCCCCCccCCC----C--CC-----CC------CCCCCcccccccccccCC--------------------CC
Q psy12044        215 L-RRWLESTKTPMAIDPI----C--SV-----PP------RLSSVTIKQLSIDELACE--------------------PQ  256 (767)
Q Consensus       215 l-~~~l~~~~~~~~~~~~----C--~~-----p~------~l~g~~i~~l~~~~l~C~--------------------P~  256 (767)
                      + ..|-.+.........-    -  ..     .+      .+.-..+.--+...+.|.                    |.
T Consensus       535 lsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~Ps  614 (873)
T KOG4194|consen  535 LSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPS  614 (873)
T ss_pred             ceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCc
Confidence            1 2233222211110000    0  00     00      000001111112233443                    66


Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +...+..+++..|+.+.+.|.++|.|.|.|.|.++|..-    +.+...++++...+     ...+.|.|+..+|.|.|+
T Consensus       615 FtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd----FPAA~eRRl~Vmpe-----dd~f~Itnvk~eD~GiYt  685 (873)
T KOG4194|consen  615 FTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD----FPAARERRLHVMPE-----DDVFFITNVKIEDQGIYT  685 (873)
T ss_pred             cccCcccceeecccceeeeeeccCCCCcceeehhcCCCC----CchhhhheeeecCC-----CCEEEEecccccccceeE
Confidence            666777888999999999999999999999999976542    12222233333332     246899999999999999


Q ss_pred             EeeccCCCCcccceEEEEEeeccc
Q psy12044        337 CVAENQAGSTSSNYTIRIVLKEEN  360 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V~~~~~p  360 (767)
                      |.|.|.+|...++.++.|..++..
T Consensus       686 C~A~n~AG~isanAtL~V~e~p~f  709 (873)
T KOG4194|consen  686 CTAQNVAGQISANATLTVLETPSF  709 (873)
T ss_pred             EeeeccccceeeceEEEEecCCcc
Confidence            999999999999999998876543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.57  E-value=6.4e-15  Score=183.49  Aligned_cols=156  Identities=22%  Similarity=0.182  Sum_probs=90.7

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL  128 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L  128 (767)
                      ++|++|+|++|.+.+..+..+.+  +++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|..+.+|+.|
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGS--FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhc--CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            34444444444444444444543  5666666666666666666666666666666666666666655666666666666


Q ss_pred             ECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc-cccCCCCCCCCcccccCCCCCC
Q psy12044        129 TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT-TISGSNILPTGLHGIDLHHNPW  206 (767)
Q Consensus       129 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt-~ip~~~~~~~~L~~L~Ls~N~l  206 (767)
                      +|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.++ .+|..+..+.+|+.|+|++|.+
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            66666666555555666666666666666666555555666666666666666554 2333333444555555555544

>KOG4237|consensus

Probab=99.49  E-value=1.5e-15  Score=160.43  Aligned_cols=196  Identities=31%  Similarity=0.427  Sum_probs=170.3

Q ss_pred             EEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCC
Q psy12044         53 VLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG  132 (767)
Q Consensus        53 ~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~  132 (767)
                      ..+-++-.|+.++...-     .....|+|..|+|+.+++++|+.+.+|+.|||++|.|+.+.|++|.++.+|..|-+-+
T Consensus        50 ~VdCr~~GL~eVP~~LP-----~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLP-----PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             eEEccCCCcccCcccCC-----CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence            45666777777765432     3677899999999999999999999999999999999999999999999988876655


Q ss_pred             -CcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC-CCCCcccccCCCCCCCchh
Q psy12044        133 -NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI-LPTGLHGIDLHHNPWTCDC  210 (767)
Q Consensus       133 -N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l~C~c  210 (767)
                       |+|+.++.+.|.+|.+|+.|.+.-|++..+..++|..+++|..|.|-+|.+..|+...+ .+..++.+.+.-|++.|+|
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence             99999999999999999999999999999999999999999999999999999998544 5688999999999999999


Q ss_pred             hhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccCC
Q psy12044        211 LLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE  254 (767)
Q Consensus       211 ~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C~  254 (767)
                      .+.|+.+++...... .+...|..|..+....+..++...+.|.
T Consensus       205 nL~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~  247 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCS  247 (498)
T ss_pred             ccchhhhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhh
Confidence            999998877665433 3566788888888888877777777775

>KOG0444|consensus

Probab=99.46  E-value=8.7e-15  Score=161.30  Aligned_cols=185  Identities=25%  Similarity=0.338  Sum_probs=106.9

Q ss_pred             eEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         31 QTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      .+++.+.++|..+|.++  .+++.+|+||+|+|..|+...|.+  |+.|-.|+|++|+|..++|. +..|..|++|+|++
T Consensus       106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfin--LtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFIN--LTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSN  182 (1255)
T ss_pred             eeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHh--hHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCC
Confidence            34555555555555544  345555555555555555555543  45555555555555555443 44455555555555


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCc-ccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIK-QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS  187 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip  187 (767)
                      |.+....-..+..|++|+.|.+++.+-+ ...|.++..+.+|..+|||.|+|..++ +.+..+.+|+.|+||+|+|+.+.
T Consensus       183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-ecly~l~~LrrLNLS~N~iteL~  261 (1255)
T KOG0444|consen  183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-ECLYKLRNLRRLNLSGNKITELN  261 (1255)
T ss_pred             ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-HHHhhhhhhheeccCcCceeeee
Confidence            5444332223333444444444443322 122345666777777888888776654 45667788888888888888777


Q ss_pred             CCCCCCCCcccccCCCCCCC----chhhhhhhhhhh
Q psy12044        188 GSNILPTGLHGIDLHHNPWT----CDCLLIGLRRWL  219 (767)
Q Consensus       188 ~~~~~~~~L~~L~Ls~N~l~----C~c~l~~l~~~l  219 (767)
                      .......+|++|+|+.|+++    |-|.+..+...+
T Consensus       262 ~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy  297 (1255)
T KOG0444|consen  262 MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLY  297 (1255)
T ss_pred             ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHH
Confidence            66666677788888888775    556666654443

>KOG0617|consensus

Probab=99.44  E-value=3.6e-15  Score=141.58  Aligned_cols=154  Identities=24%  Similarity=0.304  Sum_probs=106.4

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      ...++.|.||+|+|+.+++..-.   |.+|+.|++.+|+|+.+ |..++.+++|+.|+++-|++.-++ ..|+.++.|+.
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~---l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~~lp-rgfgs~p~lev  106 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAE---LKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNILP-RGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHH---hhhhhhhhcccchhhhc-ChhhhhchhhhheecchhhhhcCc-cccCCCchhhh
Confidence            35667777777777777766543   67777777777777776 344677777777777777776554 55777777777


Q ss_pred             EECCCCcCcc-cccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCC
Q psy12044        128 LTLSGNPIKQ-IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPW  206 (767)
Q Consensus       128 L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l  206 (767)
                      |+|.+|++.. ..|..|..+..|+.|+|++|.+.-++++ ++.+++|+.|.+..|.+-++|.+++.+..|+.|.+.+|.+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            7777777653 3355566666777777777777666553 6667777777777777777777766666777777777766


Q ss_pred             C
Q psy12044        207 T  207 (767)
Q Consensus       207 ~  207 (767)
                      .
T Consensus       186 ~  186 (264)
T KOG0617|consen  186 T  186 (264)
T ss_pred             e
Confidence            5

>KOG0617|consensus

Probab=99.43  E-value=4.8e-15  Score=140.70  Aligned_cols=171  Identities=19%  Similarity=0.276  Sum_probs=134.8

Q ss_pred             EEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         32 TVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        32 ~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      .+..+.+.+..+|+++  ..+|+.|+|++|+|..++...-.   +++|+.|+++-|++... |..|+.++.|+.|||+.|
T Consensus        37 rLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~iss---l~klr~lnvgmnrl~~l-prgfgs~p~levldltyn  112 (264)
T KOG0617|consen   37 RLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISS---LPKLRILNVGMNRLNIL-PRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             hhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhh---chhhhheecchhhhhcC-ccccCCCchhhhhhcccc
Confidence            3556667888888887  67888889999998888776543   78888888888888765 677888899999999888


Q ss_pred             CCCC-CCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        110 VLQT-VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       110 ~Lt~-l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      ++.. ..|..|..|..|+.|+|++|.+.-+++ .++++++|+.|.+..|.+-.++. .++.+..|+.|++.+|+++-+|+
T Consensus       113 nl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~lpk-eig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  113 NLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSLPK-EIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             ccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhCcH-HHHHHHHHHHHhcccceeeecCh
Confidence            8764 567778788888888999998887766 47888889999988888877754 57788888889999999988888


Q ss_pred             CCCCC---CCcccccCCCCCCCc
Q psy12044        189 SNILP---TGLHGIDLHHNPWTC  208 (767)
Q Consensus       189 ~~~~~---~~L~~L~Ls~N~l~C  208 (767)
                      ++...   .+-+.+.+..|||.-
T Consensus       191 el~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  191 ELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             hhhhhhhhhhHHHHhhhhCCCCC
Confidence            76643   233456777888863

>KOG0444|consensus

Probab=99.37  E-value=4.9e-14  Score=155.44  Aligned_cols=162  Identities=22%  Similarity=0.276  Sum_probs=130.5

Q ss_pred             ccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCC
Q psy12044         42 TVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTF  119 (767)
Q Consensus        42 ~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f  119 (767)
                      .||.++  +..|+.||||+|+|...+...-.   -.++..|+|++|+|..++...|-+|+.|-.||||+|++..++|. +
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~---AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~  169 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEY---AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-I  169 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhhcchhhhh---hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-H
Confidence            577777  46788888888888877655432   46788888888888888777788888888888888888888765 6


Q ss_pred             CCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcc-ccchhhhcCCCCCCeeeccCCccccccCCCCCCCCccc
Q psy12044        120 PDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIE-VIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHG  198 (767)
Q Consensus       120 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~-~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~  198 (767)
                      ..|..|++|.|++|.+...--..+..+++|++|.+++.+-+ .-+|..+..+.+|..+|||.|+|..+|..+....+|+.
T Consensus       170 RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~Lrr  249 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRR  249 (1255)
T ss_pred             HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhhe
Confidence            77888888888888887665556666778888888876432 22345688899999999999999999999999999999


Q ss_pred             ccCCCCCCC
Q psy12044        199 IDLHHNPWT  207 (767)
Q Consensus       199 L~Ls~N~l~  207 (767)
                      |+|++|.++
T Consensus       250 LNLS~N~it  258 (1255)
T KOG0444|consen  250 LNLSGNKIT  258 (1255)
T ss_pred             eccCcCcee
Confidence            999999986

>KOG0472|consensus

Probab=99.34  E-value=2.2e-14  Score=151.83  Aligned_cols=150  Identities=26%  Similarity=0.361  Sum_probs=85.4

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT  129 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~  129 (767)
                      ++..|++.+|++..+++....   ++.|++|+...|-++.+ |..+++|.+|+.|+|..|+|..++  .|.++..|.+|.
T Consensus       161 ~l~~l~~~~n~l~~l~~~~i~---m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh  234 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKALPENHIA---MKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELH  234 (565)
T ss_pred             HHHHhhccccchhhCCHHHHH---HHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHH
Confidence            344444444444444444443   34455555555554444 333555556666666666655554  355566666666


Q ss_pred             CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      ++.|.|.-++.....++.+|.+|||.+|+++..+.+ +.-+.+|++||+|+|.|+++|...+.+ .|+.|.+.|||+.
T Consensus       235 ~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  235 VGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             hcccHHHhhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence            666666655555555666666666666666665543 444666666666666666666666655 6666666666653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.32  E-value=4.4e-12  Score=150.33  Aligned_cols=161  Identities=21%  Similarity=0.267  Sum_probs=118.0

Q ss_pred             CceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCC
Q psy12044         21 SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTN  100 (767)
Q Consensus        21 ~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~  100 (767)
                      .|.|.-. +...++|++.+|..+|+.++.+|+.|+|.+|+|+.++..      +++|+.|+|++|+|+.+. .   ...+
T Consensus       195 ~~~Cl~~-~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l------p~~Lk~LdLs~N~LtsLP-~---lp~s  263 (788)
T PRK15387        195 MRACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLP-V---LPPG  263 (788)
T ss_pred             HHHHhcC-CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC------CCCCcEEEecCCccCccc-C---cccc
Confidence            3556433 356899999999999999999999999999999988742      578999999999999874 2   2467


Q ss_pred             CCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC
Q psy12044        101 LVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN  180 (767)
Q Consensus       101 L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~  180 (767)
                      |+.|+|++|.|+.++. .   ..+|+.|+|++|+|+.++.    .+++|+.|+|++|.|++++. .   ..+|..|++++
T Consensus       264 L~~L~Ls~N~L~~Lp~-l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~-l---p~~L~~L~Ls~  331 (788)
T PRK15387        264 LLELSIFSNPLTHLPA-L---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA-L---PSELCKLWAYN  331 (788)
T ss_pred             cceeeccCCchhhhhh-c---hhhcCEEECcCCccccccc----cccccceeECCCCccccCCC-C---ccccccccccc
Confidence            8888888888887653 2   2567778888888877654    24668888888888877643 1   23466666777


Q ss_pred             CccccccCCCCCCCCcccccCCCCCCC
Q psy12044        181 NKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       181 N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |+|+.+|.   .+.+|+.|+|++|.+.
T Consensus       332 N~L~~LP~---lp~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        332 NQLTSLPT---LPSGLQELSVSDNQLA  355 (788)
T ss_pred             Cccccccc---cccccceEecCCCccC
Confidence            77776663   2246667777777665

>KOG0472|consensus

Probab=99.30  E-value=8.7e-14  Score=147.38  Aligned_cols=170  Identities=25%  Similarity=0.375  Sum_probs=155.1

Q ss_pred             EEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         32 TVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        32 ~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      .++|+...+.++|+++  ...+..|+..+|+++.++++.+.   +.+|..|++.+|++....|..+. ++.|++||...|
T Consensus       118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~---~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N  193 (565)
T KOG0472|consen  118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVN---LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN  193 (565)
T ss_pred             hhhccccceeecCchHHHHhhhhhhhccccccccCchHHHH---HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchh
Confidence            3667778888888887  45788899999999999988876   78999999999999999887666 999999999999


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      -++.++|+ ++.|.+|..|+|..|+|..++  .|.++..|.+|+++.|.|+-++.+...++.+|..|||.+|+++++|.+
T Consensus       194 ~L~tlP~~-lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde  270 (565)
T KOG0472|consen  194 LLETLPPE-LGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE  270 (565)
T ss_pred             hhhcCChh-hcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH
Confidence            99988865 899999999999999999997  599999999999999999999998888999999999999999999999


Q ss_pred             CCCCCCcccccCCCCCCCc
Q psy12044        190 NILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       190 ~~~~~~L~~L~Ls~N~l~C  208 (767)
                      +..+.+|..||+++|.++.
T Consensus       271 ~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             HHHhhhhhhhcccCCcccc
Confidence            9999999999999999874

>KOG0618|consensus

Probab=99.29  E-value=1.2e-13  Score=159.30  Aligned_cols=181  Identities=21%  Similarity=0.250  Sum_probs=150.6

Q ss_pred             CceecccCCeeEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhcc-----------------------CCC
Q psy12044         21 SCICKWKGGKQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKM-----------------------GLV   75 (767)
Q Consensus        21 ~C~C~~~g~~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~-----------------------~L~   75 (767)
                      .|.|.|.-  ..+.|..+.+..+|+.+  .+.|++|+|..|.|..+++..|...                       .+.
T Consensus       282 ri~~~~~L--~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~  359 (1081)
T KOG0618|consen  282 RISRITSL--VSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA  359 (1081)
T ss_pred             HHhhhhhH--HHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhH
Confidence            45565532  45777788888888866  5789999999999998887555421                       123


Q ss_pred             CccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEecc
Q psy12044         76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELS  155 (767)
Q Consensus        76 ~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  155 (767)
                      .|+.|++.+|.|+.-.-..|.++.+|+.|+|+.|+|..++...+.++..|+.|+||+|+++.++ ..+..+..|++|...
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAH  438 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhc
Confidence            4677899999999877777999999999999999999999999999999999999999999998 578889999999999


Q ss_pred             CCCccccchhhhcCCCCCCeeeccCCccccccCCCCCC-CCcccccCCCCCC
Q psy12044        156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPW  206 (767)
Q Consensus       156 ~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~-~~L~~L~Ls~N~l  206 (767)
                      +|.|...+  .+..++.|+.|||+.|+|+.+--....+ ++|++|||+||.+
T Consensus       439 sN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  439 SNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            99999887  5788999999999999999654333334 8999999999996

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.27  E-value=1.2e-11  Score=147.40  Aligned_cols=161  Identities=19%  Similarity=0.313  Sum_probs=127.4

Q ss_pred             CeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         29 GKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        29 ~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      ....+.+++.+++.+|..++++++.|+|++|.|+.++...+     .+|+.|+|++|+|+.+ |..+.  .+|+.|+|++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-----~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-----GNIKTLYANSNQLTSI-PATLP--DTIQEMELSI  250 (754)
T ss_pred             CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-----cCCCEEECCCCccccC-Chhhh--ccccEEECcC
Confidence            35678888899999999999999999999999999876543     4899999999999976 43332  4799999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      |.|+.++.. +.  .+|+.|+|++|+|+.++.. +.  .+|+.|+|++|+|+.++.. +  ..+|+.|+|++|+|+.+|.
T Consensus       251 N~L~~LP~~-l~--s~L~~L~Ls~N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~  321 (754)
T PRK15370        251 NRITELPER-LP--SALQSLDLFHNKISCLPEN-LP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTALPE  321 (754)
T ss_pred             CccCcCChh-Hh--CCCCEEECcCCccCccccc-cC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccCCc
Confidence            999977543 32  5799999999999977543 32  5799999999999987643 2  2468888888888888775


Q ss_pred             CCCCCCCcccccCCCCCCCc
Q psy12044        189 SNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       189 ~~~~~~~L~~L~Ls~N~l~C  208 (767)
                      ..  +.+|+.|++++|.+.+
T Consensus       322 ~l--~~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        322 TL--PPGLKTLEAGENALTS  339 (754)
T ss_pred             cc--cccceeccccCCcccc
Confidence            43  3578888888888764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.24  E-value=1.4e-11  Score=146.71  Aligned_cols=159  Identities=23%  Similarity=0.320  Sum_probs=109.7

Q ss_pred             eeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      -..++++++.+..+|..+..+|+.|+|++|.|+.++....     .+|+.|+|++|.|..+ |..+.  .+|+.|+|++|
T Consensus       201 L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~-----~~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N  272 (754)
T PRK15370        201 ITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP-----DTIQEMELSINRITEL-PERLP--SALQSLDLFHN  272 (754)
T ss_pred             CcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh-----ccccEEECcCCccCcC-ChhHh--CCCCEEECcCC
Confidence            3567888889999998888899999999999998765432     4688899999988865 44343  47888899888


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      +|+.++. .+.  .+|+.|+|++|+|+.++.. +  ..+|+.|+|++|.|+.++...   .++|+.|++++|.|+.+|..
T Consensus       273 ~L~~LP~-~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~~  343 (754)
T PRK15370        273 KISCLPE-NLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSLPAS  343 (754)
T ss_pred             ccCcccc-ccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccCCccc---cccceeccccCCccccCChh
Confidence            8887653 332  4788888888888876542 2  135666667777666554321   24566666666666666543


Q ss_pred             CCCCCCcccccCCCCCCC
Q psy12044        190 NILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       190 ~~~~~~L~~L~Ls~N~l~  207 (767)
                      +  +++|+.|+|++|.+.
T Consensus       344 l--~~sL~~L~Ls~N~L~  359 (754)
T PRK15370        344 L--PPELQVLDVSKNQIT  359 (754)
T ss_pred             h--cCcccEEECCCCCCC
Confidence            3  245666666666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.23  E-value=1.9e-11  Score=144.97  Aligned_cols=158  Identities=21%  Similarity=0.223  Sum_probs=96.7

Q ss_pred             EEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCC
Q psy12044         32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL  111 (767)
Q Consensus        32 ~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~L  111 (767)
                      .+++.++.+..+|. .+++|+.|+|++|+|++++..      ..+|+.|++++|.|+.+. . +  ..+|+.|+|++|+|
T Consensus       286 ~L~Ls~N~Lt~LP~-~p~~L~~LdLS~N~L~~Lp~l------p~~L~~L~Ls~N~L~~LP-~-l--p~~Lq~LdLS~N~L  354 (788)
T PRK15387        286 KLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPAL------PSELCKLWAYNNQLTSLP-T-L--PSGLQELSVSDNQL  354 (788)
T ss_pred             EEECcCCccccccc-cccccceeECCCCccccCCCC------cccccccccccCcccccc-c-c--ccccceEecCCCcc
Confidence            45666777777775 456788888888888876531      123444444444444432 1 0  12444555555554


Q ss_pred             CCCCCCCCC-----------------CCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCC
Q psy12044        112 QTVPSDTFP-----------------DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLE  174 (767)
Q Consensus       112 t~l~p~~f~-----------------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~  174 (767)
                      +.+++. ..                 ...+|+.|+|++|.|+.++..    ..+|+.|+|++|.|+.++. .   ..+|+
T Consensus       355 s~LP~l-p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~-l---~~~L~  425 (788)
T PRK15387        355 ASLPTL-PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM-L---PSGLL  425 (788)
T ss_pred             CCCCCC-CcccceehhhccccccCcccccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc-c---hhhhh
Confidence            443321 10                 123566777777777765431    2467777777777776543 1   24577


Q ss_pred             eeeccCCccccccCCCCCCCCcccccCCCCCCCch
Q psy12044        175 WLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       175 ~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~  209 (767)
                      .|+|++|+|+.||..+..+.+|..|+|++|+|++.
T Consensus       426 ~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        426 SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             hhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence            78888888888887777777888888888888753

>PLN03150 hypothetical protein; Provisional

Probab=99.20  E-value=5.9e-11  Score=140.24  Aligned_cols=110  Identities=18%  Similarity=0.208  Sum_probs=85.0

Q ss_pred             CCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeecc
Q psy12044        100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLD  179 (767)
Q Consensus       100 ~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls  179 (767)
                      .++.|+|++|.+++..|..|..+++|+.|+|++|.|++..+..+..+++|+.|+|++|+|++.+|..+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36778888888888888888888888888888888888777778888888888888888888888888888888888888


Q ss_pred             CCccc-cccCCCCC-CCCcccccCCCCCCCch
Q psy12044        180 NNKIT-TISGSNIL-PTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       180 ~N~Lt-~ip~~~~~-~~~L~~L~Ls~N~l~C~  209 (767)
                      +|+|+ .+|..+.. ..++..+++.+|+..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccC
Confidence            88887 45544332 23455677888877653

>KOG0618|consensus

Probab=99.05  E-value=8.7e-12  Score=144.21  Aligned_cols=164  Identities=26%  Similarity=0.287  Sum_probs=115.2

Q ss_pred             CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccC----------------------cccccCCCCCCE
Q psy12044         46 GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID----------------------SKAFRGLTNLVD  103 (767)
Q Consensus        46 ~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~----------------------p~~f~~L~~L~~  103 (767)
                      ..+.+++++++++|+++.++ .+...  +.+|+.|.+.+|+|..+.                      |....+++.|++
T Consensus       238 p~p~nl~~~dis~n~l~~lp-~wi~~--~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~t  314 (1081)
T KOG0618|consen  238 PVPLNLQYLDISHNNLSNLP-EWIGA--CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRT  314 (1081)
T ss_pred             cccccceeeecchhhhhcch-HHHHh--cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeee
Confidence            33567777888888777777 55543  677777777777664332                      333455677777


Q ss_pred             EEccCCCCCCCCCCCCCC-------------------------CCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCC
Q psy12044        104 LDFSHNVLQTVPSDTFPD-------------------------YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG  158 (767)
Q Consensus       104 L~Ls~N~Lt~l~p~~f~~-------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  158 (767)
                      |+|..|+|..+++..|.-                         ++.|+.|+|.+|.++.-.-..+.+..+|+.|+|++|.
T Consensus       315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            777777776665432221                         2235556666666665554556677888888888888


Q ss_pred             ccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCchhhh
Q psy12044        159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLL  212 (767)
Q Consensus       159 L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l  212 (767)
                      |..++...+.++..|+.|+||+|+|+.||..+..+..|++|...+|.+.|.-.+
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~  448 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPEL  448 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhh
Confidence            888888888888888888888888888887777778888888888888876543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=2e-10  Score=113.34  Aligned_cols=106  Identities=26%  Similarity=0.382  Sum_probs=23.5

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT  129 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~  129 (767)
                      .+++|+|++|.|+.+..-..   .+.+|+.|+|++|.|+.+.  .|..++.|++|+|++|+|+.+.+.....+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~---~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGA---TLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ----------------S--T---T-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccchhh---hhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            34555555555554432111   1345555555555555543  244455555555555555544321112344555555


Q ss_pred             CCCCcCccccc-CCcCCCCCccEEeccCCCcc
Q psy12044        130 LSGNPIKQIKT-GAFQPLSYLVTLELSKCGIE  160 (767)
Q Consensus       130 Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~  160 (767)
                      |++|+|..+.. ..+..+++|+.|+|.+|.++
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            55555544322 12333444444454444444

>PLN03150 hypothetical protein; Provisional

Probab=98.97  E-value=1.3e-09  Score=129.06  Aligned_cols=106  Identities=18%  Similarity=0.121  Sum_probs=57.9

Q ss_pred             cEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCC
Q psy12044         78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC  157 (767)
Q Consensus        78 ~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  157 (767)
                      +.|+|++|.|.+..|..|..+++|+.|+|++|.|++.+|..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|
T Consensus       421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            34444444444444445555555555555555555555555555555555555555555555555555555555666666


Q ss_pred             CccccchhhhcCC-CCCCeeeccCCcc
Q psy12044        158 GIEVIEDAAFVGL-DSLEWLKLDNNKI  183 (767)
Q Consensus       158 ~L~~i~~~~~~~l-~~L~~L~Ls~N~L  183 (767)
                      .|++..|..+..+ .++..+++.+|..
T Consensus       501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        501 SLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cccccCChHHhhccccCceEEecCCcc
Confidence            5555555554432 3456677777754

>KOG0532|consensus

Probab=98.90  E-value=6.5e-11  Score=130.78  Aligned_cols=165  Identities=25%  Similarity=0.301  Sum_probs=86.9

Q ss_pred             EEecCCCccccccCC----CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         33 VECVNKSLITVVEGM----DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        33 v~C~~~~L~~iP~~l----~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      +..+++.+..+|.+-    .......||+.|++..++.....   +..|+.|.|..|.|..+ |.++.++..|.+|+|+.
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~---f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACA---FVSLESLILYHNCIRTI-PEAICNLEALTFLDLSS  130 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccccCchHHHH---HHHHHHHHHHhccceec-chhhhhhhHHHHhhhcc
Confidence            445566666666533    23345667777777776655443   34555555666655554 34455666666666666


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      |+++.++.. +..|+ |+.|.+++|+++.++. .++.+.+|..||.+.|.|..+++. +..+.+|+.|++..|++..+|+
T Consensus       131 NqlS~lp~~-lC~lp-Lkvli~sNNkl~~lp~-~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~lp~  206 (722)
T KOG0532|consen  131 NQLSHLPDG-LCDLP-LKVLIVSNNKLTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDLPE  206 (722)
T ss_pred             chhhcCChh-hhcCc-ceeEEEecCccccCCc-ccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhCCH
Confidence            666655533 33332 5556666666655544 234455555555555555554442 4444444444444444444444


Q ss_pred             CCCCCCCcccccCCCCCC
Q psy12044        189 SNILPTGLHGIDLHHNPW  206 (767)
Q Consensus       189 ~~~~~~~L~~L~Ls~N~l  206 (767)
                      +.. .-.|..||++.|.+
T Consensus       207 El~-~LpLi~lDfScNki  223 (722)
T KOG0532|consen  207 ELC-SLPLIRLDFSCNKI  223 (722)
T ss_pred             HHh-CCceeeeecccCce
Confidence            433 22344444444444

>KOG1259|consensus

Probab=98.87  E-value=2.8e-10  Score=116.93  Aligned_cols=132  Identities=27%  Similarity=0.288  Sum_probs=110.2

Q ss_pred             CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEe
Q psy12044         74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE  153 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  153 (767)
                      ...|+.|+|++|.|+.+. .+..-+++++.|+++.|.|..+.  .+..+++|+.|+||+|.++.+.. .-..+-++++|+
T Consensus       283 Wq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchhhhh-hhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhh-hHhhhcCEeeee
Confidence            456899999999999885 45777899999999999999886  38889999999999999987754 234578899999


Q ss_pred             ccCCCccccchhhhcCCCCCCeeeccCCcccccc--CCCCCCCCcccccCCCCCCCchhh
Q psy12044        154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS--GSNILPTGLHGIDLHHNPWTCDCL  211 (767)
Q Consensus       154 Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip--~~~~~~~~L~~L~Ls~N~l~C~c~  211 (767)
                      |+.|.|..+.  .+..+-+|..||+++|+|..+.  ..++.++.|..|.|.+||+....+
T Consensus       359 La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  359 LAQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            9999988764  3667888999999999998665  456788999999999999986443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.86  E-value=1.9e-09  Score=106.37  Aligned_cols=111  Identities=27%  Similarity=0.313  Sum_probs=35.0

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCCCCC-CCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCC
Q psy12044         95 FRGLTNLVDLDFSHNVLQTVPSDTFP-DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL  173 (767)
Q Consensus        95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L  173 (767)
                      +.+..++++|+|++|.|+.+.  .++ .+.+|+.|+|++|.|+.+..  +..++.|+.|+|++|.|+.+.......+++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            334456677777777776653  243 45677777777777776643  5667777777777777777654322356777


Q ss_pred             CeeeccCCccccccCC--CCCCCCcccccCCCCCCCch
Q psy12044        174 EWLKLDNNKITTISGS--NILPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       174 ~~L~Ls~N~Lt~ip~~--~~~~~~L~~L~Ls~N~l~C~  209 (767)
                      +.|+|++|+|..+..-  +..+++|+.|+|.+||+.-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            7777777777765432  22457788888888887533

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.85  E-value=7.7e-10  Score=119.74  Aligned_cols=157  Identities=24%  Similarity=0.242  Sum_probs=91.2

Q ss_pred             CCccEEEeeCCCCCCCC------chhhhccCCCCccEEEccCCCCCccCcccccCCCC---CCEEEccCCCCCC----CC
Q psy12044         49 PNTQVLDYTGNNLKTLH------NEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTN---LVDLDFSHNVLQT----VP  115 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~------~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~---L~~L~Ls~N~Lt~----l~  115 (767)
                      ++++.|+++++.+.+..      ...+..  +.+|+.|+|++|.+....+..|..+.+   |++|+|++|.++.    ..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l  128 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTK--GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL  128 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHh--cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence            44777777777665311      123332  567777777777776555555554444   7777777777663    11


Q ss_pred             CCCCCCC-CCCcEEECCCCcCcccc----cCCcCCCCCccEEeccCCCcccc----chhhhcCCCCCCeeeccCCccccc
Q psy12044        116 SDTFPDY-PSLMKLTLSGNPIKQIK----TGAFQPLSYLVTLELSKCGIEVI----EDAAFVGLDSLEWLKLDNNKITTI  186 (767)
Q Consensus       116 p~~f~~l-~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~L~~i----~~~~~~~l~~L~~L~Ls~N~Lt~i  186 (767)
                      ...+..+ ++|+.|+|++|.+++..    ...+..+.+|+.|+|++|.+++.    ....+..+++|+.|+|++|.++..
T Consensus       129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            1233444 67777777777776321    22344556677777777777632    122344456777777777776532


Q ss_pred             c-----CCCCCCCCcccccCCCCCCC
Q psy12044        187 S-----GSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       187 p-----~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      .     ..+...++|+.|++++|++.
T Consensus       209 ~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         209 GASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhcccCCCCEEecCCCcCc
Confidence            2     22223456777777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532|consensus

Probab=98.84  E-value=1.5e-10  Score=128.04  Aligned_cols=169  Identities=21%  Similarity=0.222  Sum_probs=146.4

Q ss_pred             eEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         31 QTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      ..++.+.+.+..+|..+  +..|..|.|.+|.|..++.....   |..|+.|+|+.|+++.+... +..|+ |+.|-+++
T Consensus        78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~---L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICN---LEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhh---hhHHHHhhhccchhhcCChh-hhcCc-ceeEEEec
Confidence            45777888888898876  67899999999999988876654   88999999999999988544 55555 89999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      |+++.++++ ++.+..|..|+.+.|.|..+++ .++.+.+|+.|++..|++..++++ +.. -.|..||+|.|+++.||.
T Consensus       153 Nkl~~lp~~-ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~lp~E-l~~-LpLi~lDfScNkis~iPv  228 (722)
T KOG0532|consen  153 NKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDLPEE-LCS-LPLIRLDFSCNKISYLPV  228 (722)
T ss_pred             CccccCCcc-cccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhCCHH-HhC-CceeeeecccCceeecch
Confidence            999988754 6788999999999999999876 688899999999999999999876 444 458899999999999999


Q ss_pred             CCCCCCCcccccCCCCCCCc
Q psy12044        189 SNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       189 ~~~~~~~L~~L~Ls~N~l~C  208 (767)
                      .+-.+..|+.|-|.+||+..
T Consensus       229 ~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhhheeeeeccCCCCC
Confidence            99999999999999999973

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.81  E-value=1.3e-09  Score=117.86  Aligned_cols=159  Identities=23%  Similarity=0.266  Sum_probs=113.4

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCC---ccEEEccCCCCCc----cCcccccCC-CCCCEEEccCCCCCCCC----
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVN---LQKIYLSRCRISV----IDSKAFRGL-TNLVDLDFSHNVLQTVP----  115 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~---L~~L~Ls~N~L~~----i~p~~f~~L-~~L~~L~Ls~N~Lt~l~----  115 (767)
                      .++|+.|+|++|.+.......+..  +.+   |+.|+|++|.++.    .....+..+ ++|+.|+|++|.+++..    
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~--l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLES--LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHH--HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            468999999999998766655553  444   9999999998884    223455666 88999999999988422    


Q ss_pred             CCCCCCCCCCcEEECCCCcCcccc----cCCcCCCCCccEEeccCCCccccch----hhhcCCCCCCeeeccCCcccccc
Q psy12044        116 SDTFPDYPSLMKLTLSGNPIKQIK----TGAFQPLSYLVTLELSKCGIEVIED----AAFVGLDSLEWLKLDNNKITTIS  187 (767)
Q Consensus       116 p~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~L~~i~~----~~~~~l~~L~~L~Ls~N~Lt~ip  187 (767)
                      ...+..+.+|+.|+|++|.+++..    ...+..+++|+.|+|++|.+++...    ..+..+++|+.|++++|.++...
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~  237 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG  237 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence            234566778999999999887421    2234455789999999998875533    34556788999999999887421


Q ss_pred             C-----CCC-CCCCcccccCCCCCCCc
Q psy12044        188 G-----SNI-LPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       188 ~-----~~~-~~~~L~~L~Ls~N~l~C  208 (767)
                      .     ... ....|+.|++++|.+..
T Consensus       238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~  264 (319)
T cd00116         238 AAALASALLSPNISLLTLSLSCNDITD  264 (319)
T ss_pred             HHHHHHHHhccCCCceEEEccCCCCCc
Confidence            1     110 13678899999998863

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.75  E-value=5.6e-08  Score=123.07  Aligned_cols=148  Identities=21%  Similarity=0.312  Sum_probs=76.6

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      +.+|+.|.+.++.+..++.. |.   +.+|+.|+|.+|+|..+ +..+..+++|+.|+|++|......|. +..+++|+.
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~-f~---~~~L~~L~L~~s~l~~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~  661 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSN-FR---PENLVKLQMQGSKLEKL-WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLET  661 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCc-CC---ccCCcEEECcCcccccc-ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccE
Confidence            44566666666666555443 22   45666666666665544 33455566666666665542222222 555666666


Q ss_pred             EECCCCcCcccccCCcCCCCCccEEeccCC-CccccchhhhcCCCCCCeeeccCCcc-ccccCCCCCCCCcccccCCCCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKC-GIEVIEDAAFVGLDSLEWLKLDNNKI-TTISGSNILPTGLHGIDLHHNP  205 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~L~~i~~~~~~~l~~L~~L~Ls~N~L-t~ip~~~~~~~~L~~L~Ls~N~  205 (767)
                      |+|++|......|..+..+.+|+.|+|++| .++.++. .+ ++.+|+.|+|++|.. ..+|.   ...+|+.|+|++|.
T Consensus       662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~  736 (1153)
T PLN03210        662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETA  736 (1153)
T ss_pred             EEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCc
Confidence            666665443334445556666666666654 3333332 12 455666666665532 23332   12345555555555


Q ss_pred             C
Q psy12044        206 W  206 (767)
Q Consensus       206 l  206 (767)
                      +
T Consensus       737 i  737 (1153)
T PLN03210        737 I  737 (1153)
T ss_pred             c
Confidence            3

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.75  E-value=6.5e-08  Score=122.46  Aligned_cols=98  Identities=18%  Similarity=0.130  Sum_probs=56.9

Q ss_pred             EEEecCCCccccccCC-CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCC
Q psy12044         32 TVECVNKSLITVVEGM-DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNV  110 (767)
Q Consensus        32 ~v~C~~~~L~~iP~~l-~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~  110 (767)
                      .+...+..+..+|..+ +.+|+.|+|++|.|..++... .  .+++|+.|+|++|.....+|. +..+++|+.|+|++|.
T Consensus       593 ~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~-~--~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~  668 (1153)
T PLN03210        593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGV-H--SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS  668 (1153)
T ss_pred             EEEecCCCCCCCCCcCCccCCcEEECcCcccccccccc-c--cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC
Confidence            3455555666677655 567777777777776665433 2  266677777766543333332 5556666666666654


Q ss_pred             CCCCCCCCCCCCCCCcEEECCCC
Q psy12044        111 LQTVPSDTFPDYPSLMKLTLSGN  133 (767)
Q Consensus       111 Lt~l~p~~f~~l~~L~~L~Ls~N  133 (767)
                      .....|..+..+++|+.|+|++|
T Consensus       669 ~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        669 SLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             CccccchhhhccCCCCEEeCCCC
Confidence            33334455556666666666654

syringae 6; Provisional

>KOG1259|consensus

Probab=98.73  E-value=2e-09  Score=110.85  Aligned_cols=137  Identities=25%  Similarity=0.246  Sum_probs=103.1

Q ss_pred             ccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCC
Q psy12044         93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDS  172 (767)
Q Consensus        93 ~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~  172 (767)
                      ..+..+..|++|||++|.|+.+. ++..-++.++.|++|.|.|..+..  +..+++|+.|||++|.++.+.... ..+-+
T Consensus       278 ~~~dTWq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh-~KLGN  353 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWH-LKLGN  353 (490)
T ss_pred             EecchHhhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhH-hhhcC
Confidence            34455678999999999999887 456667999999999999998865  788999999999999998876543 34788


Q ss_pred             CCeeeccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCccccc
Q psy12044        173 LEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQL  246 (767)
Q Consensus       173 L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l  246 (767)
                      ++.|.|+.|.|.++..- ..+-+|..||+++|++.---.            ........|-.-..+.++++..+
T Consensus       354 IKtL~La~N~iE~LSGL-~KLYSLvnLDl~~N~Ie~lde------------V~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  354 IKTLKLAQNKIETLSGL-RKLYSLVNLDLSSNQIEELDE------------VNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             EeeeehhhhhHhhhhhh-HhhhhheeccccccchhhHHH------------hcccccccHHHHHhhcCCCcccc
Confidence            99999999999877642 345678899999999852111            11124455665556666666553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=1.6e-08  Score=82.13  Aligned_cols=59  Identities=37%  Similarity=0.540  Sum_probs=29.1

Q ss_pred             CCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCc
Q psy12044        124 SLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNK  182 (767)
Q Consensus       124 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~  182 (767)
                      +|+.|+|++|+|+.+++..|.++++|+.|+|++|.|+.+++.+|.++++|+.|+|++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444444444444555555555555554444445555555555555544

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.67  E-value=1.4e-08  Score=113.79  Aligned_cols=151  Identities=33%  Similarity=0.416  Sum_probs=75.6

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCC-CccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLV-NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL  128 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~-~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L  128 (767)
                      .++.|++.+|.++.+++....   +. +|+.|++++|.+..+. ..+..+++|+.|++++|.++.+++. ...++.|+.|
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~---~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L  191 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGL---LKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNL  191 (394)
T ss_pred             ceeEEecCCcccccCcccccc---chhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhhh-hhhhhhhhhe
Confidence            355555555555555443322   21 4555555555555442 2244555555555555555554432 1134455555


Q ss_pred             ECCCCcCcccccC----------------------CcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccc
Q psy12044        129 TLSGNPIKQIKTG----------------------AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI  186 (767)
Q Consensus       129 ~Ls~N~l~~l~~~----------------------~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~i  186 (767)
                      ++++|+++.++..                      .+..+.++..|.+.+|.+..+ +..+..+.+|+.|++++|.++.+
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccc
Confidence            5555555544432                      233444444444555544443 22345555666666666666666


Q ss_pred             cCCCCCCCCcccccCCCCCCC
Q psy12044        187 SGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       187 p~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      +. +....+++.|++++|.+.
T Consensus       271 ~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         271 SS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cc-ccccCccCEEeccCcccc
Confidence            55 444456666666666554

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.57  E-value=1e-07  Score=85.36  Aligned_cols=91  Identities=22%  Similarity=0.333  Sum_probs=71.7

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      ..+....+..|+.+.|.|.+.|.|.+.+.|.+++..+.....       +....   ....+.|.|.++..+|.|.|+|.
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~-------~~~~~---~~~~s~L~I~~~~~~D~G~Ytc~   74 (98)
T cd05762           5 QFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEG-------IKIEN---TENSSKLTITEGQQEHCGCYTLE   74 (98)
T ss_pred             ECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCc-------EEEEe---cCCeeEEEECCCChhhCEEEEEE
Confidence            344567788999999999999999999999999988753321       11111   12346899999999999999999


Q ss_pred             eccCCCCcccceEEEEEeecc
Q psy12044        339 AENQAGSTSSNYTIRIVLKEE  359 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~~~~  359 (767)
                      +.|..|...+.+.|.|..++.
T Consensus        75 a~N~~G~~~~~~~l~V~~~P~   95 (98)
T cd05762          75 VENKLGSRQAQVNLTVVDKPD   95 (98)
T ss_pred             EEcCCCceeEEEEEEEecCCC
Confidence            999999999988888776543

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.56  E-value=9.3e-08  Score=83.73  Aligned_cols=82  Identities=24%  Similarity=0.329  Sum_probs=63.4

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .......+..|+.+.|.|.+.|.|.|.++|.+++..+.....         ..     .....|.|.++..+|.|.|.|.
T Consensus         6 ~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~---------~~-----~~~~~L~I~~v~~~D~G~Y~C~   71 (88)
T cd05851           6 VKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAE---------IS-----MSGAVLKIFNIQPEDEGTYECE   71 (88)
T ss_pred             EccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCE---------Ee-----cCCCEEEECcCChhhCEEEEEE
Confidence            344456778999999999999999999999998765432110         00     1124799999999999999999


Q ss_pred             eccCCCCcccceEEEE
Q psy12044        339 AENQAGSTSSNYTIRI  354 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V  354 (767)
                      |.|..|.....+.+.|
T Consensus        72 A~N~~G~~~~~~~l~V   87 (88)
T cd05851          72 AENIKGKDKHQARVYV   87 (88)
T ss_pred             EEcCCCceEEEEEEEE
Confidence            9999999877766554

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG1187|consensus

Probab=98.54  E-value=2.3e-08  Score=110.49  Aligned_cols=69  Identities=14%  Similarity=0.277  Sum_probs=58.3

Q ss_pred             CCCcccHHHHHhcccCCCCCCCCccccCCCCcceEEe-eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        427 ESPKYTSVNATSATCMDKVNGGYIIADGHNDMMLYAT-DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       427 ~~~~fs~~El~~AT~~nnFs~~nlIG~GgfG~VYKG~-~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      ..+.|+|.||++||  +||+++|+||+||||.||||. .||+.||+++....+...       +.||.||++.+++.+-
T Consensus        61 ~~~~fs~~el~~AT--~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~-------~~eF~~Ei~~ls~l~H  130 (361)
T KOG1187|consen   61 PLRSFSYDELRKAT--NNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG-------EREFLNEVEILSRLRH  130 (361)
T ss_pred             CcceeeHHHHHHHH--hCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc-------hhHHHHHHHHHhcCCC
Confidence            45679999999999  999999999999999999999 999999998643332221       4569999999998876

>KOG3207|consensus

Probab=98.50  E-value=3.4e-08  Score=106.76  Aligned_cols=159  Identities=25%  Similarity=0.211  Sum_probs=93.3

Q ss_pred             CCCccEEEeeCCCCCCCCch-hhhccCCCCccEEEccCCCCCccCccc-ccCCCCCCEEEccCCCCCCCCC-CCCCCCCC
Q psy12044         48 DPNTQVLDYTGNNLKTLHNE-KFQKMGLVNLQKIYLSRCRISVIDSKA-FRGLTNLVDLDFSHNVLQTVPS-DTFPDYPS  124 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~-~f~~~~L~~L~~L~Ls~N~L~~i~p~~-f~~L~~L~~L~Ls~N~Lt~l~p-~~f~~l~~  124 (767)
                      +++++.|||+.|-|....+- .+.. .|++|+.|+|+.|++....... -..++.|+.|.|+.|.|+.-.- .....+++
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~e-qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAE-QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHH-hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            46677777777777654432 1222 4777777777777766533221 1245677777777777663110 12234567


Q ss_pred             CcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccch-hhhcCCCCCCeeeccCCccccccCC-C------CCCCCc
Q psy12044        125 LMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED-AAFVGLDSLEWLKLDNNKITTISGS-N------ILPTGL  196 (767)
Q Consensus       125 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~ip~~-~------~~~~~L  196 (767)
                      |+.|+|..|....+.......+..|+.|+|++|++..... .....++.|+.|+++.+.+.+|..- .      ....+|
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            7777777775444444444456667777777776665541 2345567777777777777654321 1      233567


Q ss_pred             ccccCCCCCCC
Q psy12044        197 HGIDLHHNPWT  207 (767)
Q Consensus       197 ~~L~Ls~N~l~  207 (767)
                      +.|++..|++.
T Consensus       304 ~~L~i~~N~I~  314 (505)
T KOG3207|consen  304 EYLNISENNIR  314 (505)
T ss_pred             eeeecccCccc
Confidence            77777777764

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.49  E-value=1.5e-07  Score=79.36  Aligned_cols=73  Identities=25%  Similarity=0.487  Sum_probs=57.8

Q ss_pred             ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcc
Q psy12044        268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~  347 (767)
                      +|..+.|.|.+.+.|.|.++|.+++..+.....       ...      ...+.|.|.++..+|.|.|.|.|.|..|...
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~-------~~~------~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   67 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRR-------HLV------LSSGTLRISRVALHDQGQYECQAVNIVGSQR   67 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCC-------eEE------ccCCeEEEeeCCHHhCEEEEEEEEeCCCcee
Confidence            478899999999999999999998876643211       111      1234799999999999999999999999987


Q ss_pred             cceEEE
Q psy12044        348 SNYTIR  353 (767)
Q Consensus       348 ~s~sL~  353 (767)
                      ..+.+.
T Consensus        68 ~~~~L~   73 (74)
T cd05745          68 TVAQLT   73 (74)
T ss_pred             EEEEEe
Confidence            766554

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.48  E-value=3.8e-07  Score=82.05  Aligned_cols=89  Identities=25%  Similarity=0.371  Sum_probs=67.2

Q ss_pred             cceeecccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ...++..|+.+.|.|.+.+ .|.|.+.|.+++..+......     .............++|.|..+..+|.|.|+|.|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~   85 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTE-----IVTSENESEYRYVSELKLVRLKESEAGTYTFLAS   85 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcce-----eEEEeccCcceEEEEEEEeecCHhhCeeEEEEEE
Confidence            3567889999999999999 899999999999887642111     0111111122356789999999999999999999


Q ss_pred             cCCCCcccceEEEEE
Q psy12044        341 NQAGSTSSNYTIRIV  355 (767)
Q Consensus       341 N~~G~s~~s~sL~V~  355 (767)
                      |..|.....+.+.|.
T Consensus        86 N~~G~~~~t~~L~V~  100 (101)
T cd04975          86 NSDASKSLTFELYVN  100 (101)
T ss_pred             CCCccEEEEEEEEEE
Confidence            999987777666553

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.45  E-value=2.2e-07  Score=76.99  Aligned_cols=66  Identities=26%  Similarity=0.395  Sum_probs=54.6

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.+.|.|.+.|++++..+...                  ...+.|.|.++..+|.|.|+|.|.|..|...++++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------------------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~   62 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK------------------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRIS   62 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc------------------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEE
Confidence            368899999999999999999877421                  12357999999999999999999999998777776


Q ss_pred             EEEE
Q psy12044        352 IRIV  355 (767)
Q Consensus       352 L~V~  355 (767)
                      +.+.
T Consensus        63 ~~l~   66 (67)
T cd05863          63 LELI   66 (67)
T ss_pred             EEEE
Confidence            6553

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>KOG1859|consensus

Probab=98.45  E-value=5.2e-09  Score=118.53  Aligned_cols=128  Identities=25%  Similarity=0.298  Sum_probs=106.0

Q ss_pred             CccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEecc
Q psy12044         76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELS  155 (767)
Q Consensus        76 ~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  155 (767)
                      .|...+.++|.|.... .++.-++.|+.|+|+.|+++...  .+..|++|++|||+.|.+..++.-...++. |+.|+|+
T Consensus       165 ~L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            3555677788887763 56778899999999999999886  688999999999999999998865555555 9999999


Q ss_pred             CCCccccchhhhcCCCCCCeeeccCCccccccCC--CCCCCCcccccCCCCCCCch
Q psy12044        156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS--NILPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       156 ~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~--~~~~~~L~~L~Ls~N~l~C~  209 (767)
                      +|.++.+..  +.+|.+|+.|||++|-|.+..+-  ++.+..|+.|+|.|||+-|.
T Consensus       241 nN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  241 NNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            999998764  77899999999999998865543  23457889999999999886

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.44  E-value=1.2e-07  Score=106.32  Aligned_cols=149  Identities=30%  Similarity=0.357  Sum_probs=119.2

Q ss_pred             EEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCC-CCCEEEccCCCCCCCCCCCCCCCCCCcEEECC
Q psy12044         53 VLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT-NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS  131 (767)
Q Consensus        53 ~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~-~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls  131 (767)
                      .|++..|.+.........   ++.++.|++.+|.++.+.+. ...+. +|+.|++++|.+..++ ..+..+++|+.|+++
T Consensus        97 ~l~~~~~~~~~~~~~~~~---~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLRSNISELLE---LTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLS  171 (394)
T ss_pred             eeeccccccccCchhhhc---ccceeEEecCCcccccCccc-cccchhhcccccccccchhhhh-hhhhccccccccccC
Confidence            578888887544444433   67899999999999998653 44553 9999999999999885 347889999999999


Q ss_pred             CCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCc
Q psy12044        132 GNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       132 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C  208 (767)
                      +|+++.+++. ...++.|+.|++++|++..++.. ...+..|+.|.+++|.+..++.......++..+.+.+|.+.+
T Consensus       172 ~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~  246 (394)
T COG4886         172 FNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED  246 (394)
T ss_pred             Cchhhhhhhh-hhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee
Confidence            9999999873 33688999999999999999874 234566999999999766666666677788888888888775

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.42  E-value=2.8e-07  Score=77.76  Aligned_cols=72  Identities=29%  Similarity=0.450  Sum_probs=56.5

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      |..+.|.|.+.+.|.|.+.|.+++..+....       .+...      ..+.|.|.++..+|.|.|.|.|.|..|.+..
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~-------r~~~~------~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   67 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNS-------RISIW------DDGSLEILNITKLDEGSYTCFAENNRGKANS   67 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCC-------CEEEc------CCCEEEECcCChhHCEEEEEEEECCCCceeE
Confidence            5678899999999999999999876553221       11111      1347999999999999999999999999888


Q ss_pred             ceEEE
Q psy12044        349 NYTIR  353 (767)
Q Consensus       349 s~sL~  353 (767)
                      ...|.
T Consensus        68 ~~~l~   72 (73)
T cd05852          68 TGVLS   72 (73)
T ss_pred             EEEEE
Confidence            76654

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.42  E-value=6.7e-07  Score=78.29  Aligned_cols=83  Identities=20%  Similarity=0.261  Sum_probs=62.4

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecc-cCcceeeeEEEEeeeccCCCCceeEeeccCCCCcc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE-EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~-~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~  347 (767)
                      |+.+.|.|.+.+.|.+.+.|.+++..+....     .+ +.... .......+.|.|.++..+|.|.|+|.|.|..|...
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~-----~r-~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~   74 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEM-----SR-YLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR   74 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCC-----Cc-EEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce
Confidence            5778999999999999999999887653221     11 11111 11123357899999999999999999999999999


Q ss_pred             cceEEEEEee
Q psy12044        348 SNYTIRIVLK  357 (767)
Q Consensus       348 ~s~sL~V~~~  357 (767)
                      ..+.|.|...
T Consensus        75 ~~~~L~V~~~   84 (88)
T cd05735          75 GIIQLTVQEP   84 (88)
T ss_pred             EEEEEEEeCC
Confidence            8888877653

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.40  E-value=4.5e-07  Score=76.94  Aligned_cols=74  Identities=30%  Similarity=0.468  Sum_probs=55.3

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.|.|.|.+.|.+++..+....      ..+.....+.  ...+|.|.++..+|.|.|.|.|.|..|.+.....
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~------~r~~~~~~~~--g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~   72 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNT------DRISLYQDNS--GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHAR   72 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCC------CeEEEEEcCC--CcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEE
Confidence            4689999999999999999988775321      1112211111  1247999999999999999999999999887766


Q ss_pred             EE
Q psy12044        352 IR  353 (767)
Q Consensus       352 L~  353 (767)
                      |.
T Consensus        73 L~   74 (75)
T cd05892          73 LD   74 (75)
T ss_pred             Ee
Confidence            54

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.40  E-value=4.2e-07  Score=80.18  Aligned_cols=83  Identities=24%  Similarity=0.380  Sum_probs=63.3

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...++.+|+.+.|.|.+.+.|.|.+.|++++..+.....       +......  .....|.|.++..+|.|.|.|.|.|
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~-------~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N   79 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDH-------YNVKVEQ--GKYASLTIKGVSSEDSGKYGIVVKN   79 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCC-------EEEEEcC--CCEEEEEEccCChhhCEEEEEEEEE
Confidence            356788999999999999999999999998877643211       1111110  1235799999999999999999999


Q ss_pred             CCCCcccceEEE
Q psy12044        342 QAGSTSSNYTIR  353 (767)
Q Consensus       342 ~~G~s~~s~sL~  353 (767)
                      ..|.....+.+.
T Consensus        80 ~~G~~~~~~~v~   91 (92)
T cd05737          80 KYGGETVDVTVS   91 (92)
T ss_pred             CCCcceEEEEEe
Confidence            999887766554

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.36  E-value=6.1e-07  Score=77.91  Aligned_cols=79  Identities=27%  Similarity=0.504  Sum_probs=62.6

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +....+..|+.+.|.|.+.+.|.|.+.|.+++..+.....       +.       ...+.|.|.++..+|.|.|.|.|.
T Consensus         6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~-------~~-------~~~~~L~i~~~~~~D~G~Y~C~a~   71 (85)
T cd05728           6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENR-------IE-------VEAGDLRITKLSLSDSGMYQCVAE   71 (85)
T ss_pred             CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCe-------EE-------EeCCEEEEeeCCHHHCEEEEEEEE
Confidence            3456788999999999999999999999998876643211       11       123479999999999999999999


Q ss_pred             cCCCCcccceEEE
Q psy12044        341 NQAGSTSSNYTIR  353 (767)
Q Consensus       341 N~~G~s~~s~sL~  353 (767)
                      |..|...+++.+.
T Consensus        72 N~~G~~~~~~~l~   84 (85)
T cd05728          72 NKHGTIYASAELA   84 (85)
T ss_pred             CCCCeEEEEEEEE
Confidence            9999877766554

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.35  E-value=9.4e-07  Score=75.67  Aligned_cols=76  Identities=17%  Similarity=0.275  Sum_probs=57.0

Q ss_pred             cccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceEE
Q psy12044        273 SLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI  352 (767)
Q Consensus       273 sL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL  352 (767)
                      .+.|.+.|.|.|.++|++++..+.......     ......+.....+.|.|..+...|+|.|+|+|.|..|.+.+++.+
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~   76 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYIC-----TKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA   76 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCccee-----eeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence            367899999999999999998886543211     111111222345789999999999999999999999998887765


Q ss_pred             E
Q psy12044        353 R  353 (767)
Q Consensus       353 ~  353 (767)
                      .
T Consensus        77 ~   77 (79)
T cd05855          77 H   77 (79)
T ss_pred             e
Confidence            4

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.35  E-value=7.4e-07  Score=80.20  Aligned_cols=87  Identities=18%  Similarity=0.294  Sum_probs=66.5

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecc--cCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE--EGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~--~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ..++..+..+.|.|.+.+.|.|.+.|.+++..+......      .....  .......++|.|.++..+|.|.|+|.|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~------~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~   85 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTE------ITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQ   85 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcce------EEeccccccceeeccEEEEeeCCHHHCEEEEEEEE
Confidence            456677889999999999999999999999887643311      11100  0122345789999999999999999999


Q ss_pred             cCCCCcccceEEEEE
Q psy12044        341 NQAGSTSSNYTIRIV  355 (767)
Q Consensus       341 N~~G~s~~s~sL~V~  355 (767)
                      |..|....++.+.|.
T Consensus        86 N~~g~~~~t~~l~V~  100 (101)
T cd05859          86 NEDAVKSYTFALQIQ  100 (101)
T ss_pred             cCCceEEEEEEEEEE
Confidence            999988777766653

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.34  E-value=1e-06  Score=76.75  Aligned_cols=82  Identities=16%  Similarity=0.281  Sum_probs=62.9

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      .+.+..|+.+.|.|.+.|.|.|.+.|.+++..+.....      .+....   ....+.|.|.++..+|.|.|.|.|.|.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~------r~~~~~---~~~~~~L~I~~~~~~D~G~Y~c~a~N~   74 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEG------RVRVES---YKDLSSFVIEGAEREDEGVYTITVTNP   74 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCC------eEEEEE---cCCeEEEEECCCccCcCEEEEEEEEeC
Confidence            35677899999999999999999999998877643210      111111   112468999999999999999999999


Q ss_pred             CCCcccceEEE
Q psy12044        343 AGSTSSNYTIR  353 (767)
Q Consensus       343 ~G~s~~s~sL~  353 (767)
                      .|....++.+.
T Consensus        75 ~G~~~~~~~l~   85 (86)
T cd05894          75 VGEDHASLFVK   85 (86)
T ss_pred             CCcEEEEEEEE
Confidence            99987766554

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.33  E-value=7.1e-07  Score=75.69  Aligned_cols=75  Identities=25%  Similarity=0.553  Sum_probs=58.0

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      |+.+.|.|.+.+.|.|.++|.+++..+......    . .+.      ...+.|.|.++..+|.|.|.|.|.|..|...+
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~----~-~~~------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   69 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPD----P-RRH------VSSGALILTDVQPSDTAVYQCEARNRHGNLLA   69 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCC----c-eEE------eeCCEEEECCCChhhCEEEEEEEECCCCeEEE
Confidence            567899999999999999999998776432210    0 011      12357999999999999999999999999887


Q ss_pred             ceEEEE
Q psy12044        349 NYTIRI  354 (767)
Q Consensus       349 s~sL~V  354 (767)
                      ++.+.|
T Consensus        70 ~~~l~V   75 (76)
T cd05867          70 NAHVHV   75 (76)
T ss_pred             EEEEEE
Confidence            776654

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.33  E-value=9.8e-07  Score=77.43  Aligned_cols=81  Identities=20%  Similarity=0.387  Sum_probs=62.5

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|+.+.|.|.+.|.|.|.+.|.+++..+......       . .  ......+.|.|.++...|.|.|.|.|.|.
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~-------~-~--~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~   78 (90)
T cd04972           9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTD-------T-L--ETTVDIYNLQLSNITSETQTTVTCTAENP   78 (90)
T ss_pred             CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccE-------E-E--EecCCEEEEEEecCCcccCEEEEEEEECC
Confidence            455789999999999999999999999998765432110       0 0  01122458999999999999999999999


Q ss_pred             CCCcccceEEE
Q psy12044        343 AGSTSSNYTIR  353 (767)
Q Consensus       343 ~G~s~~s~sL~  353 (767)
                      .|...+.+.|.
T Consensus        79 ~G~~~~~~~L~   89 (90)
T cd04972          79 VGQANVSVQVT   89 (90)
T ss_pred             CCceeEEEEEe
Confidence            99987766554

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.32  E-value=1e-06  Score=77.99  Aligned_cols=83  Identities=27%  Similarity=0.520  Sum_probs=65.1

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|+.+.|.|.+.+.|.|.+.|.+++..+....      ..+.+.     ...+.|.|.++..+|.|.|.|.|.|.
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~------~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~   80 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE------EKYSFN-----EDGSEMTILDVDKLDEAEYTCIAENK   80 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC------CEEEEe-----CCCCEEEECCCChhhCEEEEEEEEcC
Confidence            4567889999999999999999999999887664321      111111     12346999999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus        81 ~G~~~~~~~L~V~~   94 (95)
T cd05730          81 AGEQEAEIHLKVFA   94 (95)
T ss_pred             CCeEEEEEEEEEEe
Confidence            99988888777654

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.32  E-value=1.5e-06  Score=76.41  Aligned_cols=85  Identities=22%  Similarity=0.367  Sum_probs=56.6

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeec----ccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYST----EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~----~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      |..+.|.|.+.+.|.|.|+|.+++.. ....+...........    ..........|.|.++..+|.|.|.|.|.|..|
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEV-NGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEeccc-CCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            56789999999999999999985321 0111110111000000    111112234789999999999999999999999


Q ss_pred             CcccceEEEE
Q psy12044        345 STSSNYTIRI  354 (767)
Q Consensus       345 ~s~~s~sL~V  354 (767)
                      ...+++.|.|
T Consensus        80 ~~~~sa~L~V   89 (90)
T cd04974          80 PSHHSAWLTV   89 (90)
T ss_pred             cccCCEEEEe
Confidence            9988887765

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.30  E-value=1e-06  Score=76.86  Aligned_cols=80  Identities=25%  Similarity=0.359  Sum_probs=62.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +....+..|..+.|.|.+.+.|.|.+.|.+++..+.....       .       ......|.|.++..+|.|.|.|.+.
T Consensus         8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~-------~-------~~~~~~L~i~~v~~~D~G~Y~C~a~   73 (88)
T cd04968           8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAE-------I-------SMSGAVLKIPNIQFEDEGTYECEAE   73 (88)
T ss_pred             CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccE-------E-------EEeCCEEEECCCCcccCEEEEEEEE
Confidence            3456678899999999999999999999997654322111       0       0134579999999999999999999


Q ss_pred             cCCCCcccceEEEE
Q psy12044        341 NQAGSTSSNYTIRI  354 (767)
Q Consensus       341 N~~G~s~~s~sL~V  354 (767)
                      |..|.......+.|
T Consensus        74 N~~G~~~~~~~l~V   87 (88)
T cd04968          74 NIKGKDTHQGRIYV   87 (88)
T ss_pred             ECCCcEEEEEEEEE
Confidence            99999877666544

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.30  E-value=1.3e-06  Score=77.76  Aligned_cols=83  Identities=22%  Similarity=0.387  Sum_probs=59.8

Q ss_pred             ecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCC
Q psy12044        266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS  345 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~  345 (767)
                      ...|+.+.|.|.+.|.|.|.++|.+++..+........  ..+....   ....+.|.|.++..+|.|.|.|.|.|..|.
T Consensus        14 ~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~--~~~~v~~---~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   88 (97)
T cd05869          14 MELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLD--GHIVVRS---HARVSSLTLKYIQYTDAGEYLCTASNTIGQ   88 (97)
T ss_pred             EEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccC--ccEEEEc---CccEEEEEEecCccCcCEEEEEEEecCCCC
Confidence            44579999999999999999999998765532211100  1111111   112367999999999999999999999999


Q ss_pred             cccceEEE
Q psy12044        346 TSSNYTIR  353 (767)
Q Consensus       346 s~~s~sL~  353 (767)
                      ...++.|.
T Consensus        89 ~~~~~~l~   96 (97)
T cd05869          89 DSQSMYLE   96 (97)
T ss_pred             eeEEEEEE
Confidence            88766654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.30  E-value=1.3e-06  Score=75.99  Aligned_cols=80  Identities=26%  Similarity=0.470  Sum_probs=58.5

Q ss_pred             cccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        271 NVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       271 ~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      +++|.|.+.+.|.|  .+.|.+++..+......   .+ +...  ......++|.|.+++..|.|.|+|.|.|..|...+
T Consensus         2 ~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~---~~-~~~~--~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~   75 (85)
T cd05854           2 NLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPN---GH-YRRM--EVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA   75 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEECCeEccccCCC---Cc-EEEE--EecceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence            57899999999987  57999988776432211   00 1000  01123468999999999999999999999999988


Q ss_pred             ceEEEEEe
Q psy12044        349 NYTIRIVL  356 (767)
Q Consensus       349 s~sL~V~~  356 (767)
                      ++.|.|..
T Consensus        76 ~~~L~V~~   83 (85)
T cd05854          76 SATLVVRG   83 (85)
T ss_pred             EEEEEEEC
Confidence            88887754

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>KOG3207|consensus

Probab=98.29  E-value=1.1e-07  Score=102.83  Aligned_cols=159  Identities=21%  Similarity=0.238  Sum_probs=80.6

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccC-cccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCc
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID-SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLM  126 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~-p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~  126 (767)
                      +++|+.|+|+.|++.-........ .+++|+.|.|+.|.|+.-. -..+..+++|+.|+|..|..-.+......-+..|+
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~-~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTL-LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             cccchhcccccccccCCccccchh-hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            355666666666665433332221 3556666666666666321 12234556666666666643222222333445566


Q ss_pred             EEECCCCcCccccc-CCcCCCCCccEEeccCCCccccchhh------hcCCCCCCeeeccCCccccccC--CCCCCCCcc
Q psy12044        127 KLTLSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIEDAA------FVGLDSLEWLKLDNNKITTISG--SNILPTGLH  197 (767)
Q Consensus       127 ~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~~~------~~~l~~L~~L~Ls~N~Lt~ip~--~~~~~~~L~  197 (767)
                      .|+|++|.+..... ...+.++.|+.|+++.|.|..+....      ....++|+.|+++.|++...+.  .+..+.+|+
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK  329 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence            66666666554431 23445566666666666655442111      2334566666666666654432  222334555


Q ss_pred             cccCCCCCCC
Q psy12044        198 GIDLHHNPWT  207 (767)
Q Consensus       198 ~L~Ls~N~l~  207 (767)
                      .|.+..|.++
T Consensus       330 ~l~~~~n~ln  339 (505)
T KOG3207|consen  330 HLRITLNYLN  339 (505)
T ss_pred             hhhccccccc
Confidence            5555555554

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.29  E-value=8.6e-07  Score=75.31  Aligned_cols=75  Identities=21%  Similarity=0.498  Sum_probs=57.3

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      |..+.|.|.+.+.|.|.++|.+++..+......    . ...      .....|.+.++...|.|.|.|.|.|..|...+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~----~-~~~------~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~   69 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTD----P-SRK------VDGDTIIFSKVQERSSAVYQCNASNEYGYLLA   69 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCC----c-eEE------ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEE
Confidence            567889999999999999999998776422110    0 001      11236888999999999999999999999888


Q ss_pred             ceEEEE
Q psy12044        349 NYTIRI  354 (767)
Q Consensus       349 s~sL~V  354 (767)
                      ++.+.|
T Consensus        70 ~~~l~v   75 (76)
T cd05868          70 NAFVNV   75 (76)
T ss_pred             EEEEEe
Confidence            777654

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.29  E-value=1.5e-06  Score=76.99  Aligned_cols=87  Identities=18%  Similarity=0.293  Sum_probs=62.8

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+.+|+.+.|.|.+.+.|.|.+.|.+++..+........  ..+...   .....+.|.|.++..+|.|.|.|.|.|
T Consensus         9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N   83 (96)
T cd05732           9 ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLD--GRIVVR---GHARVSSLTLKDVQLTDAGRYDCEASN   83 (96)
T ss_pred             CceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCcccc--ceEEEe---CCccEEEEEECcCCcCcCEEeEEEEEe
Confidence            356778899999999999999999999998754432211100  011111   112346899999999999999999999


Q ss_pred             CCCCcccceEEE
Q psy12044        342 QAGSTSSNYTIR  353 (767)
Q Consensus       342 ~~G~s~~s~sL~  353 (767)
                      ..|....++.+.
T Consensus        84 ~~G~~~~s~~l~   95 (96)
T cd05732          84 RIGGDQQSMYLE   95 (96)
T ss_pred             CCCCcEEEEEEe
Confidence            999987666553

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.28  E-value=1.4e-06  Score=76.83  Aligned_cols=87  Identities=25%  Similarity=0.445  Sum_probs=65.9

Q ss_pred             CCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       256 ~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      .+...+....+..|+.+.|.|.+.+.|.|.+.|.+++..+.....       +....   ....+.|.|.++..+|.|.|
T Consensus         5 ~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~-------~~~~~---~~~~~~L~i~~~~~~D~G~Y   74 (92)
T cd05747           5 TILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQR-------HQITS---TEYKSTFEISKVQMSDEGNY   74 (92)
T ss_pred             cccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCc-------EEEEE---cCCeeEEEECCCCcccCEeE
Confidence            344445567889999999999999999999999998876543211       11111   12346899999999999999


Q ss_pred             eEeeccCCCCcccceEE
Q psy12044        336 VCVAENQAGSTSSNYTI  352 (767)
Q Consensus       336 ~CvA~N~~G~s~~s~sL  352 (767)
                      .|.+.|..|.....+.|
T Consensus        75 ~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          75 TVVVENSEGKQEAQFTL   91 (92)
T ss_pred             EEEEEcCCCCEeEEEEe
Confidence            99999999987765543

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.28  E-value=1e-06  Score=74.67  Aligned_cols=74  Identities=26%  Similarity=0.430  Sum_probs=54.6

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.|.|.|.++|.+++..+....      ..+.....+  .....|.|.++..+|.|.|.|.|.|..|.......
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~------~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~   72 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNT------DRVSMHQDN--CGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR   72 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCC------CeEEEEEcC--CCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence            4689999999999999999987764321      111111111  11236999999999999999999999999877666


Q ss_pred             EE
Q psy12044        352 IR  353 (767)
Q Consensus       352 L~  353 (767)
                      |.
T Consensus        73 L~   74 (75)
T cd05893          73 LD   74 (75)
T ss_pred             Ee
Confidence            54

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.27  E-value=7.9e-07  Score=77.52  Aligned_cols=85  Identities=28%  Similarity=0.531  Sum_probs=66.9

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ......+..|+.+.|.|.+.+.|.+.+.|.+++..+......       .....   .....|.|.++...|.|.|.|.+
T Consensus         6 ~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~-------~~~~~---~~~~~L~I~~v~~~D~G~Y~C~~   75 (90)
T PF07679_consen    6 KPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRY-------QIESD---GGSSSLTIKNVTREDAGTYTCVA   75 (90)
T ss_dssp             ESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSE-------EEEEE---TTEEEEEESSESGGGSEEEEEEE
T ss_pred             ecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeee-------eeecc---cceeEEccCCCChhhCEEEEEEE
Confidence            345678889999999999999999999999998887663221       11111   14678999999999999999999


Q ss_pred             ccCCCCcccceEEEE
Q psy12044        340 ENQAGSTSSNYTIRI  354 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V  354 (767)
                      .|..|.....+.+.|
T Consensus        76 ~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   76 SNSSGEATASVNLTV   90 (90)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEC
Confidence            999888777666543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.26  E-value=1e-06  Score=73.66  Aligned_cols=70  Identities=26%  Similarity=0.471  Sum_probs=53.5

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.|.|.|.+.|.+++..+.....       ..      ......|.|.++..+|.|.|.|.|.|..|.....+.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-------~~------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   67 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-------KK------LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYT   67 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-------eE------EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEE
Confidence            35889999999999999998765432111       00      112457999999999999999999999998877666


Q ss_pred             EEE
Q psy12044        352 IRI  354 (767)
Q Consensus       352 L~V  354 (767)
                      +.|
T Consensus        68 l~V   70 (71)
T cd05876          68 VTV   70 (71)
T ss_pred             EEE
Confidence            554

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.25  E-value=1.6e-06  Score=75.00  Aligned_cols=80  Identities=21%  Similarity=0.440  Sum_probs=60.8

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+..|..+.|.|.+.+.|.|.+.|++++..+......    ..+..     ......|.|.++..+|.|.|.|.+.|..|
T Consensus         5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~----~~~~~-----~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRI----GGYKV-----RNQHWSLIMESVVPSDKGNYTCVVENEYG   75 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCce----eeeEE-----eCCceEEEEccCCcccCEEEEEEEEeCCC
Confidence            4668999999999999999999999998776533211    00001     01234688999999999999999999999


Q ss_pred             CcccceEEE
Q psy12044        345 STSSNYTIR  353 (767)
Q Consensus       345 ~s~~s~sL~  353 (767)
                      .....+.+.
T Consensus        76 ~~~~~~~l~   84 (85)
T cd05857          76 SINHTYHLD   84 (85)
T ss_pred             EEEEEEEEE
Confidence            988776654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.25  E-value=1.1e-06  Score=73.70  Aligned_cols=70  Identities=26%  Similarity=0.390  Sum_probs=55.2

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.+.|.|.+.|.+++..+.....        +.      .....|.|.++..+|.|.|+|.|.|..|....+++
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~--------~~------~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~   66 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNR--------TK------KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLT   66 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE--------EE------cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEE
Confidence            35789999999999999999887754311        11      12357999999999999999999999998877776


Q ss_pred             EEEE
Q psy12044        352 IRIV  355 (767)
Q Consensus       352 L~V~  355 (767)
                      +.+.
T Consensus        67 ~~~~   70 (71)
T cd04976          67 FTLV   70 (71)
T ss_pred             EEEE
Confidence            6553

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.25  E-value=1.2e-06  Score=73.41  Aligned_cols=69  Identities=22%  Similarity=0.451  Sum_probs=52.8

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.|.|.|.++|.+++..+.....       +...      ....|.|.++..+|.|.|.|.|.|..|...+.+.
T Consensus         2 v~l~C~~~G~P~p~v~W~k~g~~~~~~~~-------~~~~------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~   68 (71)
T cd05723           2 VIFECEVTGKPTPTVKWVKNGDMVIPSDY-------FKIV------KEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQ   68 (71)
T ss_pred             EEEEEEEEEeCCCEEEEEECCeECCCCCC-------EEEE------ecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEE
Confidence            57899999999999999998876543211       1111      1234788899999999999999999999877665


Q ss_pred             EE
Q psy12044        352 IR  353 (767)
Q Consensus       352 L~  353 (767)
                      +.
T Consensus        69 L~   70 (71)
T cd05723          69 LI   70 (71)
T ss_pred             EE
Confidence            54

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.24  E-value=1.4e-06  Score=73.43  Aligned_cols=75  Identities=27%  Similarity=0.517  Sum_probs=58.2

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      |+.+.|.|.+.+.|.|.+.|.+++..+......      ..     .......|.|.++...|.|.|.|.|.|..|...+
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~------~~-----~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~   69 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD------PR-----RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLA   69 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc------ce-----EEccCCEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence            567889999999999999999988766543211      00     0112357999999999999999999999999887


Q ss_pred             ceEEEE
Q psy12044        349 NYTIRI  354 (767)
Q Consensus       349 s~sL~V  354 (767)
                      ++.+.|
T Consensus        70 ~~~l~V   75 (76)
T cd04978          70 NAFVHV   75 (76)
T ss_pred             eEEEEE
Confidence            776654

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.24  E-value=1.4e-06  Score=73.27  Aligned_cols=72  Identities=29%  Similarity=0.460  Sum_probs=56.3

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      |..+.|.|.+.+.|.|.++|.+++..+.....       +...      ....|.|.++...|.|.|.|.|.|..|....
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~-------~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   67 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSR-------ICIW------PDGSLEILNVTKSDEGKYTCFAENFFGKANS   67 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCC-------EEEC------CCCeEEEccCChhHCEEEEEEEECCCCceEE
Confidence            56788999999999999999998876543211       1111      1246999999999999999999999999887


Q ss_pred             ceEEE
Q psy12044        349 NYTIR  353 (767)
Q Consensus       349 s~sL~  353 (767)
                      .+.+.
T Consensus        68 ~~~l~   72 (73)
T cd04969          68 TGSLS   72 (73)
T ss_pred             EEEEE
Confidence            76654

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.24  E-value=3.2e-06  Score=75.48  Aligned_cols=87  Identities=21%  Similarity=0.319  Sum_probs=61.2

Q ss_pred             cceeecccccccccccccccCCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .+..+.+|+.++|.|.+.+.|.|.+.|.+.  +..+........  ..+....   ......|.|.++..+|.|.|.|.|
T Consensus         9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~--~r~~v~~---~~~~~~L~I~~v~~~D~G~Y~C~A   83 (98)
T cd05870           9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPD--GRIEVKG---QHGESSLHIKDVKLSDSGRYDCEA   83 (98)
T ss_pred             ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcC--ceEEEee---cCCeeEEEEeeCCcCCCEEEEEEE
Confidence            456788999999999999999999999984  332221110000  1111111   112357999999999999999999


Q ss_pred             ccCCCCcccceEEE
Q psy12044        340 ENQAGSTSSNYTIR  353 (767)
Q Consensus       340 ~N~~G~s~~s~sL~  353 (767)
                      .|..|....++.|.
T Consensus        84 ~N~~G~~~~~~~l~   97 (98)
T cd05870          84 ASRIGGHQKSMYLD   97 (98)
T ss_pred             eccCCcceeEEEEe
Confidence            99999887766553

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>KOG0531|consensus

Probab=98.23  E-value=2.9e-07  Score=104.11  Aligned_cols=150  Identities=30%  Similarity=0.346  Sum_probs=107.9

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL  128 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L  128 (767)
                      ..+..+++..|.|..+... +.  .+.+|..|++.+|+|..+... +..+.+|++|+|++|.|+.+.+  +..++.|+.|
T Consensus        72 ~~l~~l~l~~n~i~~~~~~-l~--~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNH-LS--KLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL  145 (414)
T ss_pred             HhHHhhccchhhhhhhhcc-cc--cccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhh
Confidence            4566777888888763322 22  267888888888888887432 6678888888888888888753  5677778888


Q ss_pred             ECCCCcCcccccCCcCCCCCccEEeccCCCccccch-hhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        129 TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED-AAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       129 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      ++++|.|+.+..  +..+..|+.++|++|.++.+.. . ...+.+|+.+.+.+|.+..+.... ....+..+++.+|.+.
T Consensus       146 ~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~-~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  146 NLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD-LLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eeccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH-HHHHHHHhhcccccce
Confidence            888888888764  5568888888888888888776 2 466778888888888887665332 1234444566666665


Q ss_pred             c
Q psy12044        208 C  208 (767)
Q Consensus       208 C  208 (767)
                      .
T Consensus       222 ~  222 (414)
T KOG0531|consen  222 K  222 (414)
T ss_pred             e
Confidence            4

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.22  E-value=2.8e-06  Score=73.21  Aligned_cols=77  Identities=18%  Similarity=0.280  Sum_probs=56.1

Q ss_pred             ccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceEEE
Q psy12044        274 LLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIR  353 (767)
Q Consensus       274 L~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~  353 (767)
                      +.|.+.|.|.|.++|.+++..+.......   ..............+.|.|.++...|.|.|+|+|.|..|.+.+.+.+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~---~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIR---TEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCcee---EEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            57899999999999999998876443110   000011111234466899999999999999999999999988776654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.22  E-value=1.4e-06  Score=72.93  Aligned_cols=68  Identities=21%  Similarity=0.329  Sum_probs=54.3

Q ss_pred             cccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceEE
Q psy12044        273 SLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI  352 (767)
Q Consensus       273 sL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL  352 (767)
                      .+.|.+.|.|.|.+.|++++..+.....         .      .....|.|.++..+|.|.|+|.|.|..|......++
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~---------~------~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~   66 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLIVLNHT---------F------KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTF   66 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCCCE---------E------ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEE
Confidence            5789999999999999999988754211         0      112469999999999999999999999988776666


Q ss_pred             EEE
Q psy12044        353 RIV  355 (767)
Q Consensus       353 ~V~  355 (767)
                      .+.
T Consensus        67 ~l~   69 (70)
T cd05864          67 QLV   69 (70)
T ss_pred             EEE
Confidence            543

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>KOG4579|consensus

Probab=98.22  E-value=7.6e-08  Score=89.15  Aligned_cols=133  Identities=19%  Similarity=0.221  Sum_probs=90.0

Q ss_pred             ccEEEccCCCCCccC--cccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEec
Q psy12044         77 LQKIYLSRCRISVID--SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL  154 (767)
Q Consensus        77 L~~L~Ls~N~L~~i~--p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  154 (767)
                      +..++|++|.|..+.  +..+.....|...+|++|.+...++..-...+.++.|+|++|.|+.++.+ +..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence            334555555544331  11233334455566777777666655444445677777788877777665 777888888888


Q ss_pred             cCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCchhh
Q psy12044        155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCL  211 (767)
Q Consensus       155 s~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~  211 (767)
                      +.|.|...+.- +..+.+|..|+..+|.+..|+-..+-....-.+++.+++|...|.
T Consensus       108 ~~N~l~~~p~v-i~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  108 RFNPLNAEPRV-IAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             ccCccccchHH-HHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCc
Confidence            88888776554 444888899999999999988776655666667888999987765

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.21  E-value=1.9e-06  Score=73.04  Aligned_cols=74  Identities=31%  Similarity=0.441  Sum_probs=54.8

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.+.|.|.+.|.+++..+.....      .+.....+  .....|.|.++..+|.|.|.|.|.|..|.....+.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~------r~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   72 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTD------RISLYQDN--CGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNAR   72 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCC------cEEEEEcC--CCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEE
Confidence            46899999999999999999887753211      11111111  11236999999999999999999999999877766


Q ss_pred             EE
Q psy12044        352 IR  353 (767)
Q Consensus       352 L~  353 (767)
                      +.
T Consensus        73 l~   74 (75)
T cd05744          73 LD   74 (75)
T ss_pred             Ee
Confidence            54

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.20  E-value=2.1e-06  Score=73.36  Aligned_cols=77  Identities=30%  Similarity=0.558  Sum_probs=58.7

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      .....|+.+.|.|.+.+.|.|.+.|.+++..+......            ........|.|.++..+|.|.|.|.+.|..
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~------------~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   71 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG------------ESRKKKWTLSLKNLKPEDSGKYTCHVSNRA   71 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc------------eecCceEEEEEccCChhhCEEEEEEEEcCC
Confidence            34567899999999999999999999987655322111            001123579999999999999999999999


Q ss_pred             CCcccceEE
Q psy12044        344 GSTSSNYTI  352 (767)
Q Consensus       344 G~s~~s~sL  352 (767)
                      |.....+.+
T Consensus        72 G~~~~~~~v   80 (82)
T cd05856          72 GEINATYKV   80 (82)
T ss_pred             ccEEEEEEE
Confidence            987665544

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.20  E-value=1.7e-06  Score=71.79  Aligned_cols=68  Identities=22%  Similarity=0.418  Sum_probs=51.6

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.+.|.|.+.|.+++..+....        +...      ....|.|.++..+|.|.|.|.|.|..|.......
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~--------~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   66 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGR--------AEIL------DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASAS   66 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCc--------EEEe------eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEE
Confidence            4688999999999999999865442211        1111      2346999999999999999999999998776655


Q ss_pred             EE
Q psy12044        352 IR  353 (767)
Q Consensus       352 L~  353 (767)
                      +.
T Consensus        67 l~   68 (69)
T cd05725          67 LT   68 (69)
T ss_pred             EE
Confidence            43

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.19  E-value=2e-06  Score=72.37  Aligned_cols=72  Identities=26%  Similarity=0.452  Sum_probs=55.0

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.|.|.|.+.|.+++..+.....       +....   ....+.|.|.++...|.|.|.|.|.|..|.....+.
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~-------~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   71 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLKLSGR-------VQIET---TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN   71 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcCCCCe-------EEEEE---CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence            56899999999999999999887632211       11111   123568999999999999999999999998877665


Q ss_pred             EE
Q psy12044        352 IR  353 (767)
Q Consensus       352 L~  353 (767)
                      +.
T Consensus        72 l~   73 (74)
T cd05748          72 VK   73 (74)
T ss_pred             EE
Confidence            54

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.18  E-value=2.5e-06  Score=75.97  Aligned_cols=84  Identities=29%  Similarity=0.563  Sum_probs=59.8

Q ss_pred             ceeecccccccccccccccCC-CcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPE-AKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~-p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ...+..|+.+.|.|.+.+.|. |.+.|.+ ++..+....      ..+.....  ....++|.|.++..+|.|.|+|.|.
T Consensus         9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~------~r~~v~~~--~~~~~~L~I~~v~~~D~G~YtC~A~   80 (96)
T cd05865           9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQ------QRISVVRN--DDYSSTLTIYNANIDDAGIYKCVVS   80 (96)
T ss_pred             ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccC------CeEEEEeC--CCCceEEEEeccChhhCEEEEEEEE
Confidence            446788999999999999995 7999998 665443211      01111111  1124689999999999999999999


Q ss_pred             cCC-CCcccceEEEE
Q psy12044        341 NQA-GSTSSNYTIRI  354 (767)
Q Consensus       341 N~~-G~s~~s~sL~V  354 (767)
                      |.. |.+.+++.+.|
T Consensus        81 N~~~g~~~~s~~l~v   95 (96)
T cd05865          81 NEDEGESEATVNVKI   95 (96)
T ss_pred             cCCCCcEEEEEEEEE
Confidence            996 77666655543

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.18  E-value=2.4e-06  Score=75.48  Aligned_cols=83  Identities=24%  Similarity=0.414  Sum_probs=62.8

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+.....     ...... .+   ..+.|.|.++..+|.|.|.|.|.|
T Consensus         9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~-----~~~~~~-~~---~~~~L~I~~~~~~D~G~Y~C~a~N   79 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEH-----YSVKLE-QG---KYASLTIKGVTSEDSGKYSINVKN   79 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCC-----EEEEEc-CC---CEEEEEECCCChhhCEEEEEEEEe
Confidence            356788999999999999999999999998766543211     001111 11   125799999999999999999999


Q ss_pred             CCCCcccceEEE
Q psy12044        342 QAGSTSSNYTIR  353 (767)
Q Consensus       342 ~~G~s~~s~sL~  353 (767)
                      ..|.....+.++
T Consensus        80 ~~G~~~~~~~v~   91 (92)
T cd05891          80 KYGGETVDVTVS   91 (92)
T ss_pred             CCCceeeEEEEE
Confidence            999988776654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.17  E-value=2e-06  Score=71.46  Aligned_cols=68  Identities=29%  Similarity=0.527  Sum_probs=52.2

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.+.|.|.+.|.+++..+.....       +...      ..+.|.|.++..+|.|.|.|.|.|..|....++.
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~-------~~~~------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   67 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGK-------FHIS------PEGYLAIRDVGVADQGRYECVARNTIGYASVSMV   67 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCC-------EEEC------CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence            46899999999999999998876543211       1111      1357999999999999999999999998776554


Q ss_pred             E
Q psy12044        352 I  352 (767)
Q Consensus       352 L  352 (767)
                      |
T Consensus        68 L   68 (69)
T cd05746          68 L   68 (69)
T ss_pred             e
Confidence            3

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.15  E-value=2.2e-06  Score=71.25  Aligned_cols=70  Identities=24%  Similarity=0.465  Sum_probs=52.7

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.+.|.|.+.|.+++..+......        .     ......|.|.++..+|.|.|.|.|.|..|.....+.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~--------~-----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   67 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTK--------F-----ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTIS   67 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCcee--------E-----ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEE
Confidence            358899999999999999987654321110        0     112357999999999999999999999998776665


Q ss_pred             EEE
Q psy12044        352 IRI  354 (767)
Q Consensus       352 L~V  354 (767)
                      +.|
T Consensus        68 l~V   70 (71)
T cd05731          68 VTV   70 (71)
T ss_pred             EEE
Confidence            544

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.14  E-value=3.8e-06  Score=71.46  Aligned_cols=72  Identities=26%  Similarity=0.528  Sum_probs=53.1

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      ++|.|.+.+.|.|.+.|.+++..+.....      .+...     ...+.|.|.++..+|.|.|.|.|.|..|.......
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~------~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~   69 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQG------NYSVS-----SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQN   69 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCc------cEEEe-----CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCce
Confidence            46899999999999999999876643211      11111     12347999999999999999999999998755444


Q ss_pred             EEE
Q psy12044        352 IRI  354 (767)
Q Consensus       352 L~V  354 (767)
                      +++
T Consensus        70 ~~l   72 (77)
T cd05760          70 FTL   72 (77)
T ss_pred             EEE
Confidence            444

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.14  E-value=2.2e-06  Score=73.10  Aligned_cols=74  Identities=23%  Similarity=0.345  Sum_probs=55.1

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      |..+.|.|.+.+.|.|.+.|.+++..+.....       +....   ....+.|.|.++..+|.|.|.|.|.|..|...+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~-------~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   70 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSAR-------VSITS---EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFG   70 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCC-------EEEEE---CCCEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence            56789999999999999999988765532211       11111   112467999999999999999999999998766


Q ss_pred             ceEE
Q psy12044        349 NYTI  352 (767)
Q Consensus       349 s~sL  352 (767)
                      ...+
T Consensus        71 ~~~~   74 (78)
T cd05743          71 IPDG   74 (78)
T ss_pred             cccE
Confidence            5443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.13  E-value=7.8e-06  Score=72.39  Aligned_cols=94  Identities=27%  Similarity=0.445  Sum_probs=58.8

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +...+....+.+|+.+.|.|.+.+.|.|.+.|.+++..+........ .. ......+.. ....+....+...|.|.|.
T Consensus         4 i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~-~~~~~~~~~-~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           4 IVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPR-SH-RIVLPSGSL-FFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             EEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCC-cc-eEEecCCcE-EEEEeeccCCCcCcCEEEE
Confidence            33444567788999999999999999999999999877654221100 01 111111110 0011112223688999999


Q ss_pred             EeeccCCCC-cccceEEE
Q psy12044        337 CVAENQAGS-TSSNYTIR  353 (767)
Q Consensus       337 CvA~N~~G~-s~~s~sL~  353 (767)
                      |.|.|..|. ....+.+.
T Consensus        81 C~a~N~~G~~~s~~~~l~   98 (100)
T cd07693          81 CVAHNSLGEAVSRNASLE   98 (100)
T ss_pred             EEEEccccceecceEEEE
Confidence            999999998 44444443

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.13  E-value=3.7e-06  Score=70.06  Aligned_cols=67  Identities=21%  Similarity=0.420  Sum_probs=49.9

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      |..+.|.|.+.|.|.|.+.|.+++..+......              ......|.|.++  .|.|.|.|.|.|..|...+
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~--------------~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~   64 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEM--------------PVGRNVLELTNI--YESANYTCVAISSLGMIEA   64 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccce--------------ecCccEEEEecc--ccCeeEEEEEEeCCCEEEE
Confidence            567899999999999999999988765332111              011246788886  4789999999999998665


Q ss_pred             ceE
Q psy12044        349 NYT  351 (767)
Q Consensus       349 s~s  351 (767)
                      .+.
T Consensus        65 ~a~   67 (69)
T cd05739          65 TAQ   67 (69)
T ss_pred             EEE
Confidence            543

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.12  E-value=9.2e-06  Score=72.49  Aligned_cols=86  Identities=19%  Similarity=0.246  Sum_probs=61.7

Q ss_pred             cceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeeccc-CcceeeeEEEEeeeccCC-CCceeEe
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEE-GTEIKKSELLIYNSNIDD-NGTFVCV  338 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~-g~~~~~s~L~I~nvs~sD-~GtY~Cv  338 (767)
                      ....+..|..+.|.|.+.+.|.| .+.|.+++..+......     .+..... ......+.|.|.++..+| .|.|.|.
T Consensus         9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~-----r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~   83 (98)
T cd05758           9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSG-----RYTVETDPSPGGVLSTLTISNTQESDFQTSYNCT   83 (98)
T ss_pred             CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCC-----CEEEEEecCCCceEEEEEECCccccccceeEEEE
Confidence            34557889999999999999999 59999988766432210     1111111 112234689999999855 8999999


Q ss_pred             eccCCCCcccceEE
Q psy12044        339 AENQAGSTSSNYTI  352 (767)
Q Consensus       339 A~N~~G~s~~s~sL  352 (767)
                      |.|..|.+...+.|
T Consensus        84 A~N~~G~~~~~~~L   97 (98)
T cd05758          84 AWNSFGSGTAIISL   97 (98)
T ss_pred             EEcCCCcccEEEEe
Confidence            99999998776554

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.12  E-value=3.8e-06  Score=70.63  Aligned_cols=72  Identities=32%  Similarity=0.607  Sum_probs=53.5

Q ss_pred             cccccccccccccCCCcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~  347 (767)
                      |+.+.|.|.+.+.|.|.+.|.+ ++..+.....       ...      ...+.|.|.++...|.|.|.|.|.|..|...
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~-------~~~------~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   67 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSR-------TLV------YDNGTLDILITTVKDTGSFTCIASNAAGEAT   67 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCe-------EEE------ecCCEEEEEECChhhCEEEEEEEECCCCeEE
Confidence            5678899999999999999997 4544432211       111      1124688999999999999999999999877


Q ss_pred             cceEEE
Q psy12044        348 SNYTIR  353 (767)
Q Consensus       348 ~s~sL~  353 (767)
                      ..+.+.
T Consensus        68 ~~~~l~   73 (74)
T cd05764          68 ATVELH   73 (74)
T ss_pred             EEEEEE
Confidence            665554

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.11  E-value=4.4e-06  Score=71.35  Aligned_cols=80  Identities=26%  Similarity=0.477  Sum_probs=54.2

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      |+.+.|.|.+.+.|.|.+.|+++...-............ .+    .....+.|.|.++..+|.|.|.|.|.|..|....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   75 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRG-NV----VVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRA   75 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccC-CE----EEccccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence            567899999999999999999863210000000000000 00    0112357999999999999999999999999887


Q ss_pred             ceEEE
Q psy12044        349 NYTIR  353 (767)
Q Consensus       349 s~sL~  353 (767)
                      .+.|.
T Consensus        76 ~~~l~   80 (81)
T cd05765          76 NFPLS   80 (81)
T ss_pred             EEEEe
Confidence            77664

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.11  E-value=4.7e-06  Score=70.35  Aligned_cols=74  Identities=27%  Similarity=0.487  Sum_probs=52.6

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceE
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT  351 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~s  351 (767)
                      +.|.|.+.+.|.|.++|.+++.......    ....+...     ...+.|.|.++..+|.|.|.|.|.|..|....++.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~----~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~   71 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAA----RERRMHVM-----PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANAT   71 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcc----cccceEEe-----cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEE
Confidence            3588999999999999999775321110    00111111     11246899999999999999999999998877766


Q ss_pred             EEE
Q psy12044        352 IRI  354 (767)
Q Consensus       352 L~V  354 (767)
                      +.|
T Consensus        72 l~V   74 (75)
T cd05763          72 LTV   74 (75)
T ss_pred             EEE
Confidence            654

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.11  E-value=5e-06  Score=72.98  Aligned_cols=81  Identities=23%  Similarity=0.439  Sum_probs=55.8

Q ss_pred             cccccccccccccCCCcEEEeecC----eeccCCCcccccccceeecc-cC---cceeeeEEEEeeeccCCCCceeEeec
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDG----VPIQNESMSASESHAVYSTE-EG---TEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g----~~l~~~s~~~~~~~~~~~~~-~g---~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      |..+.|.|.+.+.|.|.++|.+..    ..+.....     ....... .+   .....+.|.|.++..+|.|.|.|.|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   75 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGL-----PYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAG   75 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCC-----eeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEE
Confidence            567899999999999999999843    22221110     0001100 01   01123689999999999999999999


Q ss_pred             cCCCCcccceEEEE
Q psy12044        341 NQAGSTSSNYTIRI  354 (767)
Q Consensus       341 N~~G~s~~s~sL~V  354 (767)
                      |..|....+..|.|
T Consensus        76 N~~G~~~~~a~L~V   89 (90)
T cd05858          76 NSIGISHHSAWLTV   89 (90)
T ss_pred             eCCCcccceEEEEE
Confidence            99999887776654

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.11  E-value=5.7e-06  Score=72.93  Aligned_cols=75  Identities=20%  Similarity=0.323  Sum_probs=58.6

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .+.+..+.+|+.+.|.|.+.+. .|.+.|.+++..+.....        ...     .....|.|.++..+|.|.|.|.|
T Consensus         9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~--------~~~-----~~~~~L~I~~v~~~D~G~Y~C~a   74 (91)
T cd05740           9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRL--------QLS-----NDNRTLTFNNVTRSDTGHYQCEA   74 (91)
T ss_pred             ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCE--------EEe-----CCCCEEEECcCChhhCEEEEEEE
Confidence            3445678899999999999999 999999998876543211        111     12347999999999999999999


Q ss_pred             ccCCCCccc
Q psy12044        340 ENQAGSTSS  348 (767)
Q Consensus       340 ~N~~G~s~~  348 (767)
                      .|..|...+
T Consensus        75 ~N~~G~~~S   83 (91)
T cd05740          75 SNEVSNMTS   83 (91)
T ss_pred             EcCCCCEEe
Confidence            999997554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>KOG0531|consensus

Probab=98.10  E-value=5.4e-07  Score=101.89  Aligned_cols=150  Identities=31%  Similarity=0.356  Sum_probs=115.8

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      ..++..|++.+|.|..+... +.  .+.+|+.|+|++|.|+.+.+  +..+..|+.|++++|.|+.+.  .|..+..|+.
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~-l~--~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~  166 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENL-LS--SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS--GLESLKSLKL  166 (414)
T ss_pred             ccceeeeeccccchhhcccc-hh--hhhcchheeccccccccccc--hhhccchhhheeccCcchhcc--CCccchhhhc
Confidence            57899999999999988773 22  27899999999999999865  678888999999999999885  4666899999


Q ss_pred             EECCCCcCccccc-CCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCC-CcccccCCCCC
Q psy12044        128 LTLSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT-GLHGIDLHHNP  205 (767)
Q Consensus       128 L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~-~L~~L~Ls~N~  205 (767)
                      +++++|.+..+.. . ...+.+|+.+++.+|.+..+..  +..+..+..+++..|.++.+.+...... .|+.+++.+|+
T Consensus       167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNR  243 (414)
T ss_pred             ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCc
Confidence            9999999998876 3 4677889999999998887654  3334455555777887776654322111 26777888887


Q ss_pred             CC
Q psy12044        206 WT  207 (767)
Q Consensus       206 l~  207 (767)
                      +.
T Consensus       244 i~  245 (414)
T KOG0531|consen  244 IS  245 (414)
T ss_pred             cc
Confidence            65

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.10  E-value=7.3e-06  Score=71.88  Aligned_cols=82  Identities=23%  Similarity=0.378  Sum_probs=58.0

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCccc-ccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA-SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~-~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~  347 (767)
                      |..+.|.|.+.+.|.|.+.|.+++.......... .....+...      ..+.|.|.++..+|.|.|.|.|.|..|...
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   74 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS------QTGDLTITNVQRSDVGYYICQTLNVAGSIL   74 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC------CCCeEEEeeCChhhCEEEEEEEEcCCCceE
Confidence            5678999999999999999998764321100000 000111111      134699999999999999999999999988


Q ss_pred             cceEEEEEe
Q psy12044        348 SNYTIRIVL  356 (767)
Q Consensus       348 ~s~sL~V~~  356 (767)
                      ..+.+.|..
T Consensus        75 ~~~~l~V~~   83 (90)
T cd05726          75 TKAYLEVTD   83 (90)
T ss_pred             EEEEEEEee
Confidence            888777764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.10  E-value=4.8e-06  Score=72.15  Aligned_cols=80  Identities=25%  Similarity=0.466  Sum_probs=56.8

Q ss_pred             cccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        271 NVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       271 ~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      .+.|.|.+.+.|.|  .+.|.+++..+...... .......     .....+.|.|.++...|.|.|.|.|.|..|...+
T Consensus         2 ~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~-~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~   75 (85)
T cd04970           2 SITLQCHASHDPTLDLTFTWSFNGVPIDFDKDG-GHYRRVG-----GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA   75 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEECCeEeeccCCC-ccEEEEe-----cccccceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence            56899999999988  56899988776432211 0000000     0112467999999999999999999999998887


Q ss_pred             ceEEEEEe
Q psy12044        349 NYTIRIVL  356 (767)
Q Consensus       349 s~sL~V~~  356 (767)
                      +..+.|..
T Consensus        76 ~~~l~V~~   83 (85)
T cd04970          76 SADLIVRG   83 (85)
T ss_pred             EEEEEEEC
Confidence            77776654

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>KOG1909|consensus

Probab=98.10  E-value=6.5e-07  Score=94.73  Aligned_cols=136  Identities=20%  Similarity=0.259  Sum_probs=67.2

Q ss_pred             CCccEEEeeCCCCCCCCchhhhcc--CCCCccEEEccCCCCCccCccc-------------ccCCCCCCEEEccCCCCCC
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKM--GLVNLQKIYLSRCRISVIDSKA-------------FRGLTNLVDLDFSHNVLQT  113 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~--~L~~L~~L~Ls~N~L~~i~p~~-------------f~~L~~L~~L~Ls~N~Lt~  113 (767)
                      +.|++|+||+|-|.--....|..+  .+.+|++|+|.||.+.......             ...-++|+.+...+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            367777777777664333333211  3566777777777665432222             2223466666666666554


Q ss_pred             CCC----CCCCCCCCCcEEECCCCcCccc----ccCCcCCCCCccEEeccCCCcccc----chhhhcCCCCCCeeeccCC
Q psy12044        114 VPS----DTFPDYPSLMKLTLSGNPIKQI----KTGAFQPLSYLVTLELSKCGIEVI----EDAAFVGLDSLEWLKLDNN  181 (767)
Q Consensus       114 l~p----~~f~~l~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~L~~i----~~~~~~~l~~L~~L~Ls~N  181 (767)
                      -..    ..|...+.|+.+.+..|.|..-    ...+|..+++|+.|||++|-++..    ....+..+++|+.|++++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            321    1233445555555555554321    122344455555555555554422    1233444455555555555


Q ss_pred             ccc
Q psy12044        182 KIT  184 (767)
Q Consensus       182 ~Lt  184 (767)
                      .+.
T Consensus       252 ll~  254 (382)
T KOG1909|consen  252 LLE  254 (382)
T ss_pred             ccc
Confidence            544

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.09  E-value=4.7e-06  Score=72.41  Aligned_cols=80  Identities=21%  Similarity=0.388  Sum_probs=57.9

Q ss_pred             cccccccccccC--CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        271 NVSLLCKVSAIP--EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       271 ~vsL~C~a~g~P--~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      .+.|.|.+.+.+  .+.+.|.++++.+.....   ..+   +...+.....+.|.|.+++..|.|.|+|.|.|..+...+
T Consensus         2 ~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~---~~~---~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a   75 (85)
T cd05853           2 SIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKD---GDH---FERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA   75 (85)
T ss_pred             cEEEEEEeccCCCCCcEEEEEECCEECcccCC---Ccc---EEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence            467899998754  778999999988852211   111   111111123457999999999999999999999999988


Q ss_pred             ceEEEEEe
Q psy12044        349 NYTIRIVL  356 (767)
Q Consensus       349 s~sL~V~~  356 (767)
                      ...|.|..
T Consensus        76 ~a~L~V~~   83 (85)
T cd05853          76 AADLIVRG   83 (85)
T ss_pred             EEEEEEec
Confidence            88777764

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>KOG1859|consensus

Probab=98.05  E-value=1.3e-07  Score=107.57  Aligned_cols=128  Identities=26%  Similarity=0.340  Sum_probs=95.9

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT  129 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~  129 (767)
                      .|...+++.|.|..+... +.-  ++.|+.|+|++|+++...  .+..+++|++|||+.|.|..++--....+. |+.|.
T Consensus       165 ~L~~a~fsyN~L~~mD~S-Lql--l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDES-LQL--LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHHhHHHH-HHH--HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeee
Confidence            466678888888766543 221  678888999999988874  688888999999999998887754444444 88999


Q ss_pred             CCCCcCcccccCCcCCCCCccEEeccCCCccccch-hhhcCCCCCCeeeccCCcccc
Q psy12044        130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED-AAFVGLDSLEWLKLDNNKITT  185 (767)
Q Consensus       130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~  185 (767)
                      |++|.++.+..  +.+|.+|+.|||+.|-|.+... ..+..|..|+.|.|.+|.|-.
T Consensus       239 lrnN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  239 LRNNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             ecccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            99998887754  6778889999999987776532 124456778888999987753

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.02  E-value=8.8e-06  Score=69.58  Aligned_cols=75  Identities=21%  Similarity=0.447  Sum_probs=56.7

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+. .+.+.|++++..+.....       +..       ....|.|.++..+|+|.|.|.+.|.
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~-------~~~-------~~~~L~I~~~~~~DsG~Y~C~a~n~   67 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNR-------TRI-------TGEEVQIKDAVPRDSGLYACVTSSP   67 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCce-------EEE-------eCCEEEECCCChhhCEEEEEEEeCC
Confidence            3567789999999999886 578999999877643211       111       1236999999999999999999999


Q ss_pred             CCCcccceEE
Q psy12044        343 AGSTSSNYTI  352 (767)
Q Consensus       343 ~G~s~~s~sL  352 (767)
                      .|.....+.+
T Consensus        68 ~g~~~~~~~v   77 (79)
T cd04973          68 SGSDTTYFSV   77 (79)
T ss_pred             CCcccEEEEE
Confidence            8876655443

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.01  E-value=7.9e-06  Score=70.63  Aligned_cols=80  Identities=19%  Similarity=0.340  Sum_probs=56.4

Q ss_pred             ccccccccccccc--CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCc
Q psy12044        269 GKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST  346 (767)
Q Consensus       269 G~~vsL~C~a~g~--P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s  346 (767)
                      |+.+.|.|.+.+.  |.+.+.|.+++...........  .   ..........+.|.|.+++.+|.|.|.|.+.|..|..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~--~---~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~   75 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVT--R---QSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ   75 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeec--c---cccccceEEEEEEEECCCChhhCEEEEEEEccCCCce
Confidence            5678999999999  8899999987754432211100  0   0111112345789999999999999999999999887


Q ss_pred             ccceEEE
Q psy12044        347 SSNYTIR  353 (767)
Q Consensus       347 ~~s~sL~  353 (767)
                      .++..+.
T Consensus        76 ~~s~~v~   82 (84)
T cd05742          76 KESTKVN   82 (84)
T ss_pred             EEEEEEE
Confidence            7665543

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.00  E-value=1.7e-05  Score=72.33  Aligned_cols=84  Identities=21%  Similarity=0.390  Sum_probs=60.6

Q ss_pred             ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeec-cCCCCceeEeeccCCCCc
Q psy12044        268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN-IDDNGTFVCVAENQAGST  346 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs-~sD~GtY~CvA~N~~G~s  346 (767)
                      .|..+.|.|.+.+.|.+.++|.+++..+.....   . ....... ......+.|.|.++. .+|.|.|.|.|.|..|..
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~---r-~~~~~~~-~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~   96 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNP---R-YEETTEH-TGTVHTSILTIINVSAALDYALFTCTAHNSLGED   96 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCC---e-EEEEeec-cCccceeEEEECcCCccCCCEEEEEEEEeCCccC
Confidence            467899999999999999999999877643211   0 0000111 112224789999987 589999999999999998


Q ss_pred             ccceEEEEEe
Q psy12044        347 SSNYTIRIVL  356 (767)
Q Consensus       347 ~~s~sL~V~~  356 (767)
                      ...+.|.+..
T Consensus        97 ~~~i~L~~~~  106 (109)
T cd05773          97 SLDIQLVSTS  106 (109)
T ss_pred             cEEEEEEecC
Confidence            8777776653

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.95  E-value=2e-05  Score=68.03  Aligned_cols=75  Identities=29%  Similarity=0.509  Sum_probs=57.5

Q ss_pred             cceeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ....+..|+.+.|.|.+ .+.|.|.+.|.+++..+.....     + +...      ..+.|.|.++...|.|.|.|.+.
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~-----~-~~~~------~~~~L~I~~~~~~D~G~Y~C~a~   71 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNE-----R-VRIV------DDGNLLIAEARKSDEGTYKCVAT   71 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCC-----C-EEEc------cCCEEEEeECCcccCEEEEEEEE
Confidence            34567789999999998 7899999999998876643211     0 1111      13579999999999999999999


Q ss_pred             cCCCCccc
Q psy12044        341 NQAGSTSS  348 (767)
Q Consensus       341 N~~G~s~~  348 (767)
                      |..|....
T Consensus        72 N~~G~~~s   79 (86)
T cd05724          72 NMVGERES   79 (86)
T ss_pred             eccCceee
Confidence            99987643

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>TIGR00864 PCC polycystin cation channel protein

Probab=97.94  E-value=4.4e-06  Score=107.99  Aligned_cols=78  Identities=31%  Similarity=0.574  Sum_probs=64.4

Q ss_pred             eccCCccccccCCCCC-CCCcccccCCCCCCCchhhhhhhhhhhccCCCCC--ccCCCCCCCCCCCCCcccccccccccC
Q psy12044        177 KLDNNKITTISGSNIL-PTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPM--AIDPICSVPPRLSSVTIKQLSIDELAC  253 (767)
Q Consensus       177 ~Ls~N~Lt~ip~~~~~-~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~--~~~~~C~~p~~l~g~~i~~l~~~~l~C  253 (767)
                      ||++|+|+.|+...+. +.+|+.|+|++|||.|||++.||..|++......  .....|..|..++++.+.++...++.|
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C   80 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC   80 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence            5777888877776553 4678889999999999999999999998875433  356789999999999999998887777


Q ss_pred             C
Q psy12044        254 E  254 (767)
Q Consensus       254 ~  254 (767)
                      .
T Consensus        81 ~   81 (2740)
T TIGR00864        81 D   81 (2740)
T ss_pred             C
Confidence            6

Note: this model has been restricted to the amino half because for technical reasons.

>KOG1644|consensus

Probab=97.93  E-value=1.1e-05  Score=79.82  Aligned_cols=81  Identities=23%  Similarity=0.315  Sum_probs=39.5

Q ss_pred             EEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCC
Q psy12044         53 VLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG  132 (767)
Q Consensus        53 ~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~  132 (767)
                      .++|.+.++..+..-..   .+.+...++|++|.|..+.  .|..++.|.+|.|++|+|+.+.|..-..+++|..|.|.+
T Consensus        23 e~~LR~lkip~ienlg~---~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   23 ELDLRGLKIPVIENLGA---TLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccchhhccc---cccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            44555555444332111   1334455555555555442  245555555555555555555554444445555555555


Q ss_pred             CcCccc
Q psy12044        133 NPIKQI  138 (767)
Q Consensus       133 N~l~~l  138 (767)
                      |.|..+
T Consensus        98 Nsi~~l  103 (233)
T KOG1644|consen   98 NSIQEL  103 (233)
T ss_pred             cchhhh
Confidence            555433

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=97.90  E-value=2.2e-05  Score=66.39  Aligned_cols=73  Identities=30%  Similarity=0.545  Sum_probs=55.2

Q ss_pred             cccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceEE
Q psy12044        273 SLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI  352 (767)
Q Consensus       273 sL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL  352 (767)
                      .|.|.+.+.|.|.+.|.+++..+.....     ..+....     ....|.|.++...|.|.|.|.+.|..|.+...+.+
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~-----~~~~~~~-----~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITPKLS-----KQLTLIA-----NGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSL   71 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCCCCC-----ccEEEeC-----CCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence            5789999999999999998876643211     1111111     12468999999999999999999999998887777


Q ss_pred             EEE
Q psy12044        353 RIV  355 (767)
Q Consensus       353 ~V~  355 (767)
                      .|.
T Consensus        72 ~V~   74 (76)
T cd05736          72 FVE   74 (76)
T ss_pred             EEE
Confidence            653

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.88  E-value=2.1e-05  Score=66.29  Aligned_cols=64  Identities=34%  Similarity=0.627  Sum_probs=48.1

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCc
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST  346 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s  346 (767)
                      ++|.|.+.|.|.|.+.|++++..+.....     ..+...      ..+.|.|.++..+|.|.|.|.|.|..|..
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~-----~~~~~~------~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~   64 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSN-----GRIKQL------RSGALQIENSEESDQGKYECVATNSAGTR   64 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCC-----CCEEEc------CCcEEEECCCChhhCEEEEEEEECCCCce
Confidence            36899999999999999998876532110     111111      13468999999999999999999999975

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=97.88  E-value=1.6e-05  Score=66.77  Aligned_cols=67  Identities=25%  Similarity=0.368  Sum_probs=49.8

Q ss_pred             cccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceEE
Q psy12044        273 SLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI  352 (767)
Q Consensus       273 sL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL  352 (767)
                      .|.|.+.|.|.|.+.|.+++..+.....      .+.  .     ...+|.|.++..+|.|.|+|.+.|..........+
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~------~~~--~-----~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPAAEKCS------RYH--V-----DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEECCCCCc------EEE--e-----CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            5789999999999999999977654211      011  1     12369999999999999999999986655544433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.86  E-value=3.6e-05  Score=66.69  Aligned_cols=70  Identities=19%  Similarity=0.414  Sum_probs=49.4

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      |+.+.|.|.+.+.|.+.+.|.++++..... .. . .  ... ........+.|.|.+++.+|.|.|.|.+.|..+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~-~-~--~~~-~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~   70 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKG-IP-E-V--EEV-KVPATTLRSTLTFPHATVEDSGTYECAAHESTQ   70 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCC-ce-E-E--EEE-ecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence            577899999999999999999866532111 00 0 0  000 011223467899999999999999999998776

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.86  E-value=4.9e-05  Score=67.87  Aligned_cols=89  Identities=19%  Similarity=0.236  Sum_probs=62.7

Q ss_pred             CCccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeeccc-CcceeeeEEEEeeeccCC-CCce
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEE-GTEIKKSELLIYNSNIDD-NGTF  335 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~-g~~~~~s~L~I~nvs~sD-~GtY  335 (767)
                      .......+.+|+.+.|.|.+.+.|.| .|.|.+.+..+....     ...+.+.+. ......++|.|.++...| .|.|
T Consensus         6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~-----~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGT-----SERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCC-----CCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            44445677899999999999999887 568887765443221     112222221 223456889999998877 6899


Q ss_pred             eEeeccCCCCcccceEE
Q psy12044        336 VCVAENQAGSTSSNYTI  352 (767)
Q Consensus       336 ~CvA~N~~G~s~~s~sL  352 (767)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999998776554

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=97.86  E-value=2.1e-05  Score=69.35  Aligned_cols=74  Identities=31%  Similarity=0.604  Sum_probs=53.3

Q ss_pred             cceeecccccccccccccccCCCcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ....+..|+.+.|.|.+.+.|. .+.|.+ ++..+....      + .....  .....+.|.|.++..+|.|.|.|.|.
T Consensus         8 ~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~------~-~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~A~   77 (92)
T cd04977           8 SQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQ------Q-ISVVQ--NDDVRSTLTIYNANIEDAGIYKCVAT   77 (92)
T ss_pred             CcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCC------C-EEEEe--CCCCEEEEEEecCCcccCEEEEEEEE
Confidence            3467889999999999999974 999997 454332211      1 11111  12245689999999999999999999


Q ss_pred             cCCCC
Q psy12044        341 NQAGS  345 (767)
Q Consensus       341 N~~G~  345 (767)
                      |..|.
T Consensus        78 N~~g~   82 (92)
T cd04977          78 DAKGT   82 (92)
T ss_pred             cCCCC
Confidence            98654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=97.85  E-value=2.9e-05  Score=66.87  Aligned_cols=70  Identities=26%  Similarity=0.432  Sum_probs=53.6

Q ss_pred             ccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      +....+..|+.+.|.|.+.|.|.| .|.|.+++..+... .               ....+.|.|..+  .|.|.|.|.|
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-~---------------~~~~s~L~i~~~--~d~g~Y~C~A   66 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-P---------------APSPSVLNVPGL--NETSKFSCEA   66 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-C---------------CCCCCEEEEccc--cCCeEEEEEE
Confidence            345678899999999999999999 79999999876430 0               011246777766  4789999999


Q ss_pred             ccCCCCccc
Q psy12044        340 ENQAGSTSS  348 (767)
Q Consensus       340 ~N~~G~s~~  348 (767)
                      .|..|...+
T Consensus        67 ~N~~G~~~s   75 (81)
T cd05749          67 HNAKGVTTS   75 (81)
T ss_pred             EeccCcEEe
Confidence            999996543

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=97.84  E-value=2.3e-05  Score=69.48  Aligned_cols=69  Identities=32%  Similarity=0.544  Sum_probs=51.9

Q ss_pred             ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeec-cCCCCceeEeeccCCCCc
Q psy12044        268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN-IDDNGTFVCVAENQAGST  346 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs-~sD~GtY~CvA~N~~G~s  346 (767)
                      +|+.+.|.|.+.+.|.|.++|.+++..+.....     ..+.       ...+.|.|.++. ..|.|.|.|.|.|..|..
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~-----~~~~-------~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~   85 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESD-----YRYS-------LIDGNLIISNPSEVKDSGRYQCLATNSIGSI   85 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCC-----ceEE-------eeCCeEEEccCCccCcCEEEEEEEEcCCCeE
Confidence            578899999999999999999998877643211     1111       112467888875 689999999999999976


Q ss_pred             cc
Q psy12044        347 SS  348 (767)
Q Consensus       347 ~~  348 (767)
                      .+
T Consensus        86 ~S   87 (94)
T cd05848          86 LS   87 (94)
T ss_pred             Ee
Confidence            43

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.83  E-value=2.4e-05  Score=65.66  Aligned_cols=71  Identities=25%  Similarity=0.539  Sum_probs=51.4

Q ss_pred             cccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccce
Q psy12044        273 SLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY  350 (767)
Q Consensus       273 sL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~  350 (767)
                      .|.|.+.+ .|.|.+.|.+++..+......    ..+...   .....+.|.|.++..+|.|.|.|.|.|..|.....+
T Consensus         2 ~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~----~~~~~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750           2 VLKCEATSEYPSLRFKWFKDGKELNRKNKP----RNIKIR---NKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             EEEEEccCCCCCceEEEEcCCeeccccCCc----ceEEEE---ecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            58899999 999999999988766432211    000010   112346899999999999999999999999865543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.83  E-value=3.4e-05  Score=68.47  Aligned_cols=81  Identities=19%  Similarity=0.325  Sum_probs=58.5

Q ss_pred             ceeecccccccccccccc-----cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        263 YLEIQEGKNVSLLCKVSA-----IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g-----~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|++++..+......  ..+ +  .     ...+.|.|.++..+|.|.|.|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~--~~r-~--~-----~~~~~L~I~~~~~~DsG~Y~C   77 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEE--RSR-M--H-----QQKDLLWFLPAALEDSGLYTC   77 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccc--cce-e--e-----ecCCeEEEccCCcccCeEEEE
Confidence            445678999999999998     688999999987543211100  000 1  0     013579999999999999999


Q ss_pred             eeccCCCCcccceEEE
Q psy12044        338 VAENQAGSTSSNYTIR  353 (767)
Q Consensus       338 vA~N~~G~s~~s~sL~  353 (767)
                      .+.|..|.....+.|.
T Consensus        78 ~~~N~~g~~~~~~~L~   93 (94)
T cd05756          78 VVRNSTYCMKVSISLT   93 (94)
T ss_pred             EEcCCCccEEEEEEEE
Confidence            9999998877655543

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=97.82  E-value=2.8e-05  Score=68.72  Aligned_cols=75  Identities=33%  Similarity=0.585  Sum_probs=55.4

Q ss_pred             cceeecccccccccccccccCCCcEEEeec-CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFD-GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~-g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ....+..|+.+.|.|.+.|.|. .+.|+++ +..+....      + +.....+   ....|.|.++..+|.|.|.|.|.
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~------r-~~~~~~g---~~~~L~I~~v~~~D~G~Y~C~A~   76 (92)
T cd05866           8 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQ------R-VVVQKEG---VRSRLTIYNANIEDAGIYRCQAT   76 (92)
T ss_pred             cceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCC------C-EEEEeCC---CeeEEEEecCChHHCEEEEEEEE
Confidence            3456789999999999999998 8999984 54443211      1 1111111   23589999999999999999999


Q ss_pred             cCCCCcc
Q psy12044        341 NQAGSTS  347 (767)
Q Consensus       341 N~~G~s~  347 (767)
                      |..|...
T Consensus        77 N~~G~~~   83 (92)
T cd05866          77 DAKGQTQ   83 (92)
T ss_pred             cCCCcEE
Confidence            9998754

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=97.80  E-value=4.2e-05  Score=67.75  Aligned_cols=68  Identities=29%  Similarity=0.520  Sum_probs=50.6

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeec-cCCCCceeEeeccCCCCcc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN-IDDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs-~sD~GtY~CvA~N~~G~s~  347 (767)
                      |..+.|.|.+.+.|.|.++|.+++..+.....    .+ +. .      ..+.|.|.++. ..|.|.|.|.|.|..|...
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~----~~-~~-~------~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPE----SR-YT-L------VAGNLVINNPQKARDAGSYQCLAINRCGTVV   86 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCC----ce-EE-E------ECCeEEEccCCccCcCEEEEEEEEcCcCcEE
Confidence            46799999999999999999999877642211    00 11 1      12468887765 5899999999999999765


Q ss_pred             c
Q psy12044        348 S  348 (767)
Q Consensus       348 ~  348 (767)
                      +
T Consensus        87 s   87 (94)
T cd05850          87 S   87 (94)
T ss_pred             E
Confidence            4

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.79  E-value=5e-05  Score=67.22  Aligned_cols=74  Identities=32%  Similarity=0.441  Sum_probs=53.3

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeee-----ccCCCCceeE
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS-----NIDDNGTFVC  337 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nv-----s~sD~GtY~C  337 (767)
                      ...+..|+.+.|.|.+.+.|.|.+.|.+++..+.....     .......      .+.+.+.++     ...|.|.|.|
T Consensus         8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~-----~~~~~~~------~~~l~i~~v~~~~~~~~D~G~Y~C   76 (95)
T cd05722           8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSD-----ERRQQLP------NGSLLITSVVHSKHNKPDEGFYQC   76 (95)
T ss_pred             CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccC-----cceEEcc------CCeEEEeeeeccCCCCCcCEEEEE
Confidence            45567899999999999999999999998877654321     0011111      223555555     5789999999


Q ss_pred             eeccC-CCCcc
Q psy12044        338 VAENQ-AGSTS  347 (767)
Q Consensus       338 vA~N~-~G~s~  347 (767)
                      .|.|. .|...
T Consensus        77 ~a~N~~~G~~~   87 (95)
T cd05722          77 VAQNDSLGSIV   87 (95)
T ss_pred             EEECCccCcEE
Confidence            99999 88753

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=97.77  E-value=3.7e-05  Score=68.01  Aligned_cols=67  Identities=25%  Similarity=0.432  Sum_probs=50.3

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeec-cCCCCceeEeeccCCCCcc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN-IDDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs-~sD~GtY~CvA~N~~G~s~  347 (767)
                      +..+.|.|.+.|.|.|.++|.+++..+....     .+ +. .      ..+.|.|.++. ..|.|.|.|.|.|..|...
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~-----~~-~~-~------~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~   85 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTN-----DR-YS-M------VGGNLVINNPDKYKDAGRYVCIVSNIYGKVR   85 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCC-----Ce-EE-E------ECCEEEECcCCcCCCCEEEEEEEEeCcceEE
Confidence            4479999999999999999999887653211     01 11 1      13578888875 6899999999999999765


Q ss_pred             c
Q psy12044        348 S  348 (767)
Q Consensus       348 ~  348 (767)
                      +
T Consensus        86 s   86 (93)
T cd05849          86 S   86 (93)
T ss_pred             E
Confidence            4

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG4579|consensus

Probab=97.77  E-value=2.6e-06  Score=79.21  Aligned_cols=132  Identities=21%  Similarity=0.248  Sum_probs=88.4

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT  129 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~  129 (767)
                      .+-.|+|+.+.|..+......-.....|+.++|++|.+....+..-..++.++.|+|++|.|+.++.+ +..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence            34557777777765554433322356677778888888887666555666788888888888888755 88888888888


Q ss_pred             CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc
Q psy12044        130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT  184 (767)
Q Consensus       130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt  184 (767)
                      ++.|.|...+.. +..|.+|-.|+..+|.+..++-+.|. -..+-.+++.++.+.
T Consensus       107 l~~N~l~~~p~v-i~~L~~l~~Lds~~na~~eid~dl~~-s~~~al~~lgnepl~  159 (177)
T KOG4579|consen  107 LRFNPLNAEPRV-IAPLIKLDMLDSPENARAEIDVDLFY-SSLPALIKLGNEPLG  159 (177)
T ss_pred             cccCccccchHH-HHHHHhHHHhcCCCCccccCcHHHhc-cccHHHHHhcCCccc
Confidence            888888776553 44477788888888887777665332 223333444444444

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=97.76  E-value=5.2e-05  Score=64.66  Aligned_cols=70  Identities=20%  Similarity=0.389  Sum_probs=47.0

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCccc-ccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcc
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSA-SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~-~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~  347 (767)
                      +.|.|.+.+.|.|.+.|.+++.......... .....+..      ...++|.|.++..+|.|.|.|.|.|..|...
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   71 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL------LSNGSLLIKHVLEEDSGYYLCKVSNDVGADA   71 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE------ecCCeEEECcCCcccCEEEEEEEEeCCCCCC
Confidence            4689999999999999998543211110000 00011111      1236799999999999999999999999763

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=97.72  E-value=6.8e-05  Score=64.22  Aligned_cols=80  Identities=31%  Similarity=0.568  Sum_probs=58.7

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+..|..+.|.|.+.+.|.+.+.|.+++..+.......       .  .........|.|.++..+|.|.|.|.+.|..|
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~-------~--~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g   75 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIG-------G--YKVRKKKWTLILESVVPSDSGKYTCIVENKYG   75 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCcee-------E--EEccCcEEEEEEeECCcccCEEEEEEEEECCc
Confidence            45578999999999999999999999876554322110       0  00112345789999999999999999999998


Q ss_pred             CcccceEEE
Q psy12044        345 STSSNYTIR  353 (767)
Q Consensus       345 ~s~~s~sL~  353 (767)
                      ....++.+.
T Consensus        76 ~~~~~~~l~   84 (85)
T cd05729          76 SINHTYKVD   84 (85)
T ss_pred             eEEEEEEEe
Confidence            876655543

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.69  E-value=5.3e-05  Score=64.39  Aligned_cols=67  Identities=25%  Similarity=0.449  Sum_probs=47.3

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeecc----CCCCceeEeeccCCCCcc
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI----DDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~----sD~GtY~CvA~N~~G~s~  347 (767)
                      +.|.|.+.|.|.|.++|.+++..+.....    .+ +...     ...+.|.|.++..    .|.|.|.|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~----~~-~~~~-----~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKD----PR-VTMK-----PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCC----CC-EEEe-----CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            46889999999999999998876643211    01 1111     1235677877754    689999999999999765


Q ss_pred             c
Q psy12044        348 S  348 (767)
Q Consensus       348 ~  348 (767)
                      +
T Consensus        71 s   71 (77)
T cd05733          71 S   71 (77)
T ss_pred             c
Confidence            4

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.67  E-value=6e-05  Score=65.20  Aligned_cols=75  Identities=24%  Similarity=0.428  Sum_probs=57.2

Q ss_pred             ccceeecccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      +....+..|+.++|.|.+.+ .|.+.+.|.+++..+....                ....+.|.|.++..+|.|.|.|.+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----------------~~~~~~L~I~~v~~~DsG~Y~C~a   71 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----------------MDFNGILTIRNVQLSDAGTYVCTG   71 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----------------cccCCEEEECCCCHHHCEEEEEEE
Confidence            34567789999999999865 6888999999764432110                012357999999999999999999


Q ss_pred             ccCCCCcccceE
Q psy12044        340 ENQAGSTSSNYT  351 (767)
Q Consensus       340 ~N~~G~s~~s~s  351 (767)
                      .|..|...+.+.
T Consensus        72 ~n~~g~~~~~~~   83 (85)
T cd05754          72 SNMLDTDEATAT   83 (85)
T ss_pred             eccCCeEeEEEE
Confidence            999998776544

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=97.64  E-value=7.3e-05  Score=63.63  Aligned_cols=67  Identities=21%  Similarity=0.404  Sum_probs=45.6

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeecc----CCCCceeEeeccCCCCcc
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI----DDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~----sD~GtY~CvA~N~~G~s~  347 (767)
                      +.|.|.+.|.|.|.++|.+++..+.....    .. ....     ...++|.|..+..    .|.|.|.|.|.|..|...
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~----~~-~~~~-----~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKD----PK-VTMK-----PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCC----CC-EEEe-----CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence            36889999999999999998876532111    00 1111     1134677766654    368999999999999765


Q ss_pred             c
Q psy12044        348 S  348 (767)
Q Consensus       348 ~  348 (767)
                      +
T Consensus        71 s   71 (77)
T cd05874          71 S   71 (77)
T ss_pred             e
Confidence            4

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.62  E-value=0.00011  Score=65.20  Aligned_cols=79  Identities=16%  Similarity=0.235  Sum_probs=53.6

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccC-CCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQN-ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~-~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ..+..+..|+.+.|.|.+.+.|.+.+.|.++++.+.. .........++.....  ......|.|.++..+|.|.|+|.+
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~nV~~~D~G~YtC~~   81 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKS--TPTELIISISNVQLSDEGEYTCSI   81 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeC--CCceEEEEECCCCcccCEEEEEEE
Confidence            4467888999999999999999999999987653211 1100000011111111  113468999999999999999999


Q ss_pred             cc
Q psy12044        340 EN  341 (767)
Q Consensus       340 ~N  341 (767)
                      ..
T Consensus        82 ~t   83 (95)
T cd05882          82 FT   83 (95)
T ss_pred             Ee
Confidence            75

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.59  E-value=0.00016  Score=67.29  Aligned_cols=109  Identities=26%  Similarity=0.429  Sum_probs=53.1

Q ss_pred             CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEe
Q psy12044         74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE  153 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  153 (767)
                      +.+|+.+.+.. .+..+...+|.++.+|+.|.+..+ +..+....|..+.+|+.+.+.+ .+..+....|..+.+|+.+.
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            55666666653 466666666666666666666554 6666666666666666666654 55555556666666676666


Q ss_pred             ccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       154 Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      +..+ +..+....|.+. .|+.+.+.. .++.|+.
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~  119 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE  119 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT-B-SS---
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC-CccEECC
Confidence            6554 555555566665 666666654 4444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.59  E-value=0.00016  Score=67.36  Aligned_cols=117  Identities=21%  Similarity=0.430  Sum_probs=64.5

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL  128 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L  128 (767)
                      .+|+.+.+.. .+..+....|..  +.+|+.|.+..+ +..+...+|.++.+|+.+.+.+ .+..+....|..+.+|+.+
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~--~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSN--CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT---TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCEEEECC-CeeEeChhhccc--cccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            3577777764 577777777773  667888888764 7777777788877788888854 6666666777778888888


Q ss_pred             ECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCC
Q psy12044        129 TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL  173 (767)
Q Consensus       129 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L  173 (767)
                      .+..+ +..+....|.+. .|+.+.+.. .++.+....|.++.+|
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            88765 677777777776 788877765 5666666677776665

>KOG1644|consensus

Probab=97.58  E-value=8.9e-05  Score=73.46  Aligned_cols=123  Identities=24%  Similarity=0.341  Sum_probs=89.7

Q ss_pred             cEEEccCCCCCccCccccc-CCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccC
Q psy12044         78 QKIYLSRCRISVIDSKAFR-GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK  156 (767)
Q Consensus        78 ~~L~Ls~N~L~~i~p~~f~-~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  156 (767)
                      +.++|...++..+.-  ++ .+.+...+||++|.|..+.  .|..++.|.+|.|++|+|+.+.+..-..+++|..|.|.+
T Consensus        22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccchhh--ccccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            345555555554422  22 2347789999999987764  578899999999999999999887666678899999999


Q ss_pred             CCccccch-hhhcCCCCCCeeeccCCccccccCC----CCCCCCcccccCCCC
Q psy12044        157 CGIEVIED-AAFVGLDSLEWLKLDNNKITTISGS----NILPTGLHGIDLHHN  204 (767)
Q Consensus       157 N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~ip~~----~~~~~~L~~L~Ls~N  204 (767)
                      |+|..+.. .-+..+++|+.|.+-+|.++....-    +...++|+.||+++=
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            98875532 2356788999999999988765432    234578888887653

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.55  E-value=0.00017  Score=61.62  Aligned_cols=62  Identities=21%  Similarity=0.468  Sum_probs=49.6

Q ss_pred             CccceeecccccccccccccccCC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .+....+.+|+.++|.|.+.+.|. ..+.|++++..+..                    ....|.|.++ .+|+|.|.|.
T Consensus         6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~--------------------~~~~l~i~~~-~~dsG~Y~C~   64 (78)
T cd05752           6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET--------------------TTNSYRIRAA-NNDSGEYRCQ   64 (78)
T ss_pred             CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec--------------------cCCeEEEeec-ccCCEEeEEE
Confidence            344567889999999999999886 47999999876521                    1246888899 9999999999


Q ss_pred             eccC
Q psy12044        339 AENQ  342 (767)
Q Consensus       339 A~N~  342 (767)
                      |.|.
T Consensus        65 a~~~   68 (78)
T cd05752          65 TQGS   68 (78)
T ss_pred             CCCC
Confidence            9875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.55  E-value=0.00014  Score=63.77  Aligned_cols=69  Identities=30%  Similarity=0.581  Sum_probs=50.4

Q ss_pred             ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeec-cCCCCceeEeeccCCCCc
Q psy12044        268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN-IDDNGTFVCVAENQAGST  346 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs-~sD~GtY~CvA~N~~G~s  346 (767)
                      .+..+.|.|.+.+.|.|.++|.+++..+......    . +       ....+.|.|.++. .+|.|.|.|.|.|..|..
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~----~-~-------~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~   85 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDS----R-Y-------SLVGGNLVISNPSKAKDAGRYQCLASNIVGTV   85 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCC----C-E-------EEECCEEEEecCCccCCCEEEEEEEEcCCCEE
Confidence            3467999999999999999999988766322110    0 1       1123468888876 489999999999999965


Q ss_pred             cc
Q psy12044        347 SS  348 (767)
Q Consensus       347 ~~  348 (767)
                      .+
T Consensus        86 ~S   87 (91)
T cd04967          86 LS   87 (91)
T ss_pred             Ee
Confidence            43

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.54  E-value=0.00011  Score=62.07  Aligned_cols=71  Identities=24%  Similarity=0.507  Sum_probs=49.0

Q ss_pred             cccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccc
Q psy12044        273 SLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN  349 (767)
Q Consensus       273 sL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s  349 (767)
                      .|.|.+.+ .|.+.+.|++++..+......   ...+.. .  .....+.|.|.++...|.|.|.|.+.|..|....+
T Consensus         2 ~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~---~~~~~~-~--~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~   73 (76)
T cd05895           2 VLRCETVSEYPSLRFKWFKNGKEIGAKNKP---DNKIKI-R--KKKKSSELQISKASLADNGEYKCMVSSKLGNDSVT   73 (76)
T ss_pred             EEEEecccCCCCCceEEEECCcccccCCCC---CceEEE-E--eCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence            57898764 688899999988766432111   000111 0  11234679999999999999999999999876554

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>KOG4658|consensus

Probab=97.52  E-value=6e-05  Score=92.05  Aligned_cols=139  Identities=21%  Similarity=0.222  Sum_probs=102.9

Q ss_pred             CccccccCC-CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCC--CCccCcccccCCCCCCEEEccCCCCCCCC
Q psy12044         39 SLITVVEGM-DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCR--ISVIDSKAFRGLTNLVDLDFSHNVLQTVP  115 (767)
Q Consensus        39 ~L~~iP~~l-~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~--L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~  115 (767)
                      ++..+|... ...++.+.+-+|.+..+....-    .++|+.|-+..|.  +..+....|..++.|+.|||++|.=-+-.
T Consensus       512 ~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~----~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L  587 (889)
T KOG4658|consen  512 GLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE----NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL  587 (889)
T ss_pred             CccccccccchhheeEEEEeccchhhccCCCC----CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence            455566544 3567888888888876654432    4578888888886  66666667888899999999887644555


Q ss_pred             CCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCc
Q psy12044        116 SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNK  182 (767)
Q Consensus       116 p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~  182 (767)
                      |..++.|-+|++|+|++..++.++. .+.+|..|.+|++..+.-...++..+..+.+|++|.|-...
T Consensus       588 P~~I~~Li~LryL~L~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  588 PSSIGELVHLRYLDLSDTGISHLPS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ChHHhhhhhhhcccccCCCccccch-HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            6778888889999999888887755 67888888888888876555556666678888888876654

>KOG1026|consensus

Probab=97.52  E-value=0.0002  Score=84.01  Aligned_cols=118  Identities=21%  Similarity=0.281  Sum_probs=62.4

Q ss_pred             CCCCCCeeeccCCc---cccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccc
Q psy12044        169 GLDSLEWLKLDNNK---ITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQ  245 (767)
Q Consensus       169 ~l~~L~~L~Ls~N~---Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~  245 (767)
                      ..+.|...+++.|.   +..++...+....+..+.+..|++.|.|+.+|+..|-....-.......|.....  ...+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~--~~~~~~  184 (774)
T KOG1026|consen  107 YNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTELSLVGNPFTCSCSIRWLDRYREDGFCVPYRGLACLNFLS--NGTVAN  184 (774)
T ss_pred             ccccccccccchhhhccccccccccccccccchhhhccCCCCcchhhhHHhhhcccCCCCCchhhHHHhhcC--Cceehh
Confidence            34445566666665   3344444444456667777789999999999888554433111112233432221  000100


Q ss_pred             cccccccCC-CCCCCCccceeecccccccccccccccCCCcEEEee
Q psy12044        246 LSIDELACE-PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF  290 (767)
Q Consensus       246 l~~~~l~C~-P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~  290 (767)
                        .....|. +..........+..+..+++.|...+.+.+.+.|..
T Consensus       185 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~~~~~vp~~~~~~  228 (774)
T KOG1026|consen  185 --ESIQLCGEIENRIRAANLTVEEGSSITLKCSQAGIPVPCHYWFP  228 (774)
T ss_pred             --hhhhhhcchhhhhhhhhhhhcccchheeeeecccCCCcceeeec
Confidence              0011122 111112223455667778888888888888877765

>KOG4658|consensus

Probab=97.52  E-value=6.3e-05  Score=91.82  Aligned_cols=140  Identities=21%  Similarity=0.227  Sum_probs=108.0

Q ss_pred             CCCccccccCC-CCCccEEEeeCCC--CCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCC
Q psy12044         37 NKSLITVVEGM-DPNTQVLDYTGNN--LKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT  113 (767)
Q Consensus        37 ~~~L~~iP~~l-~~~L~~L~Ls~N~--L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~  113 (767)
                      +.....++... .+.+++|-+..|.  +..+....|..  ++.|+.|||++|.=-+..|..+++|-+|++|+|++..++.
T Consensus       532 ~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~--m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~  609 (889)
T KOG4658|consen  532 NNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRS--LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH  609 (889)
T ss_pred             ccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhh--CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc
Confidence            34455555444 4579999999997  78888888875  8999999999987767779999999999999999999997


Q ss_pred             CCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCC--ccccchhhhcCCCCCCeeecc
Q psy12044        114 VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG--IEVIEDAAFVGLDSLEWLKLD  179 (767)
Q Consensus       114 l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~--L~~i~~~~~~~l~~L~~L~Ls  179 (767)
                      +| ..+.+|.+|.+|++..+.....++..+..+.+|++|.|....  .+...-..+..+.+|+.|...
T Consensus       610 LP-~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  610 LP-SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cc-hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            76 568999999999999997666667777779999999986543  333333344555555555543

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.49  E-value=0.00028  Score=62.32  Aligned_cols=79  Identities=22%  Similarity=0.270  Sum_probs=58.9

Q ss_pred             eeeccccccccccccccc-----CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        264 LEIQEGKNVSLLCKVSAI-----PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~-----P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      ..+..|....|.|...+.     |.|.+.|+++++.+......        ..      ..+.|.|.++..+|.|.|+|.
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~--------~~------~~~~L~I~~v~~~DsG~YtC~   70 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR--------FV------KGSKLLIQNVTEEDAGNYTCK   70 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE--------Ee------cCCEEEEeeCChhhCEEEEEE
Confidence            356678899999976532     57899999999877543211        00      345899999999999999999


Q ss_pred             eccCCCCcccceEEEEEe
Q psy12044        339 AENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~  356 (767)
                      +.|..+....+++..+.+
T Consensus        71 ~~n~~~~~~~~~t~t~~l   88 (92)
T cd05757          71 LTFTHNGKQYNVTRTISL   88 (92)
T ss_pred             EEecCCCEEEEEEEEEEE
Confidence            999988876666555443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.45  E-value=0.0002  Score=63.57  Aligned_cols=79  Identities=14%  Similarity=0.302  Sum_probs=52.5

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeecc--CCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQ--NESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~--~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      ..++.+.+|+.+.|.|.+.+.|.+.+.|...++.+.  ....... ..++....  .......|.|.++..+|.|.|.|.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~-~~r~~~~~--~~~~~~sL~I~~v~~~DsG~Y~C~   80 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALR-DNRIELVR--ASWHELSISISDVSLSDEGQYTCS   80 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCccccc-CCCEEEEE--CCCCcEEEEECcCCcccCEEEEEE
Confidence            346788999999999999999999999986432211  1110000 01111110  012346799999999999999999


Q ss_pred             eccC
Q psy12044        339 AENQ  342 (767)
Q Consensus       339 A~N~  342 (767)
                      +.+.
T Consensus        81 ~~t~   84 (95)
T cd07701          81 LFTM   84 (95)
T ss_pred             eEee
Confidence            9874

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=97.44  E-value=0.00016  Score=61.48  Aligned_cols=67  Identities=22%  Similarity=0.361  Sum_probs=45.7

Q ss_pred             ccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeecc----CCCCceeEeeccCCCCcc
Q psy12044        272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI----DDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       272 vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~----sD~GtY~CvA~N~~G~s~  347 (767)
                      +.|.|.+.|.|.|.++|.+++..+.....    .+ +..     ....+.|.|.++..    .|.|.|.|.|.|..|.+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~----~~-~~~-----~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKD----PR-VSM-----RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL   70 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCC----Cc-EEE-----eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence            35899999999999999998875521110    00 111     11235688877642    358999999999999765


Q ss_pred             c
Q psy12044        348 S  348 (767)
Q Consensus       348 ~  348 (767)
                      +
T Consensus        71 s   71 (77)
T cd05875          71 S   71 (77)
T ss_pred             E
Confidence            4

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.41  E-value=0.00016  Score=54.49  Aligned_cols=39  Identities=38%  Similarity=0.444  Sum_probs=22.0

Q ss_pred             CccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044        148 YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS  187 (767)
Q Consensus       148 ~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip  187 (767)
                      +|+.|+|++|+|+.+++ .+..+++|+.|+|++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence            45666666666665544 3556666666666666666554

...

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=97.34  E-value=0.00042  Score=60.28  Aligned_cols=82  Identities=17%  Similarity=0.285  Sum_probs=54.1

Q ss_pred             cccccccccccccC--CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCc
Q psy12044        269 GKNVSLLCKVSAIP--EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST  346 (767)
Q Consensus       269 G~~vsL~C~a~g~P--~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s  346 (767)
                      |+.+.|.|.+.+.+  ...+.|..++........... .+   ..........+.|.|.++...|.|.|.|.|.|..|..
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~-~~---~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~   76 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSE-NR---RSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA   76 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccc-cc---ccccccceeeeEEEEecCCcccCEEEEEEEeecceEe
Confidence            56788999998765  457799887654321111100 00   0001123356799999999999999999999988877


Q ss_pred             ccceEEEE
Q psy12044        347 SSNYTIRI  354 (767)
Q Consensus       347 ~~s~sL~V  354 (767)
                      .....+.|
T Consensus        77 ~~~t~~~V   84 (86)
T cd05862          77 KNSTIVIV   84 (86)
T ss_pred             cccEEEEE
Confidence            66665544

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>KOG1909|consensus

Probab=97.31  E-value=6.2e-05  Score=80.06  Aligned_cols=189  Identities=21%  Similarity=0.284  Sum_probs=137.6

Q ss_pred             HHhhhccCCCCCceecccCCeeEEEecCCCcc-ccccCC------CCCccEEEeeCCCCCCCCchhhhc-----------
Q psy12044         10 TIIKIVSACPTSCICKWKGGKQTVECVNKSLI-TVVEGM------DPNTQVLDYTGNNLKTLHNEKFQK-----------   71 (767)
Q Consensus        10 ~~~~~~~~CP~~C~C~~~g~~~~v~C~~~~L~-~iP~~l------~~~L~~L~Ls~N~L~~l~~~~f~~-----------   71 (767)
                      ++..+-..||.         .+.++.+++-+. ..++.+      ..+|++|.|.+|.|...-...++.           
T Consensus        83 ~l~~aL~~~~~---------L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~  153 (382)
T KOG1909|consen   83 MLSKALLGCPK---------LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKA  153 (382)
T ss_pred             HHHHHHhcCCc---------eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhcc
Confidence            34445567772         356888876664 222222      678999999999998654444222           


Q ss_pred             cCCCCccEEEccCCCCCccC----cccccCCCCCCEEEccCCCCCCC----CCCCCCCCCCCcEEECCCCcCcccc----
Q psy12044         72 MGLVNLQKIYLSRCRISVID----SKAFRGLTNLVDLDFSHNVLQTV----PSDTFPDYPSLMKLTLSGNPIKQIK----  139 (767)
Q Consensus        72 ~~L~~L~~L~Ls~N~L~~i~----p~~f~~L~~L~~L~Ls~N~Lt~l----~p~~f~~l~~L~~L~Ls~N~l~~l~----  139 (767)
                      ..-++|+++..++|++....    ...|...+.|+.+.+..|.|..-    ....|..+++|+.|+|.+|.++...    
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            12468999999999998643    45678889999999999987642    2345778999999999999998543    


Q ss_pred             cCCcCCCCCccEEeccCCCccccchhhhc-----CCCCCCeeeccCCcccc-----ccCCCCCCCCcccccCCCCCCC
Q psy12044        140 TGAFQPLSYLVTLELSKCGIEVIEDAAFV-----GLDSLEWLKLDNNKITT-----ISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       140 ~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~-----~l~~L~~L~Ls~N~Lt~-----ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      ...+..+++|+.|++++|.++.--..+|.     ..++|+.|.|.+|.|+.     +.......+.|..|+|++|.+.
T Consensus       234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            34567788999999999999865443332     36899999999999873     2222234578999999999993

>KOG3513|consensus

Probab=97.30  E-value=0.00056  Score=82.57  Aligned_cols=92  Identities=28%  Similarity=0.533  Sum_probs=74.6

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |..........+..|.++++.|.+.+.|.|.++|.+++..+......+           ......++|.|.+++..|.|.
T Consensus       332 P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~-----------~~~i~~g~L~is~v~~~dsg~  400 (1051)
T KOG3513|consen  332 PYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDP-----------RYKIDDGTLIISNVQESDSGV  400 (1051)
T ss_pred             chhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCc-----------ceEEeCCEEEEEecccccCeE
Confidence            445555666788899999999999999999999999998876332210           011234689999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEee
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      |.|.|+|..|...+++.|.|...
T Consensus       401 YQC~A~Nk~G~i~anA~L~V~a~  423 (1051)
T KOG3513|consen  401 YQCIAENKYGTIYANAELKVLAS  423 (1051)
T ss_pred             EEeeeecccceEeeeeEEEEEcc
Confidence            99999999999999999998764

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.29  E-value=0.00045  Score=54.53  Aligned_cols=63  Identities=41%  Similarity=0.722  Sum_probs=47.7

Q ss_pred             ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      +|+.+.|.|.+.+.+.+.+.|.+++..+.. ..        .     .......|.|.++...|.|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~--------~-----~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE-SN--------R-----LSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC-CC--------E-----EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            367789999988889999999997765541 00        0     012235799999999999999999988654

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.29  E-value=0.00044  Score=60.38  Aligned_cols=67  Identities=27%  Similarity=0.504  Sum_probs=51.1

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|..+.|.|.+.+ +.+.+.|.+++..+....      ..+..       ....|.|.+++.+|.|.|.|.+.+
T Consensus         4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~------~r~~~-------~~~~L~I~nv~~~DsG~Y~C~a~e   69 (87)
T cd05873           4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES------AKYLL-------YRDGLLIFNASEADAGRYQCLSVE   69 (87)
T ss_pred             ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC------ceEEE-------ECCcEEEeCCCHHHCEEEEEEEEe
Confidence            3567788999999999865 678999999998775431      11111       124589999999999999999986


Q ss_pred             C
Q psy12044        342 Q  342 (767)
Q Consensus       342 ~  342 (767)
                      .
T Consensus        70 ~   70 (87)
T cd05873          70 K   70 (87)
T ss_pred             c
Confidence            5

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.29  E-value=0.00045  Score=60.28  Aligned_cols=72  Identities=26%  Similarity=0.487  Sum_probs=51.1

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|+.+.|.|.+.+ |.+.+.|.+++..+......  ..+ +..       ....|.|.++..+|.|.|.|.+.+
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~--~~~-~~~-------~~~~L~I~~~~~~D~G~Y~C~a~~   72 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEP--EER-LLV-------TEDGLLIRSVSPADAGVYTCQSVE   72 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCc--Cce-EEE-------cCCCEEEccCCHHHCEEEEEEEec
Confidence            3456778999999999887 88899999987654332110  000 111       123488999999999999999987


Q ss_pred             CCC
Q psy12044        342 QAG  344 (767)
Q Consensus       342 ~~G  344 (767)
                      ..+
T Consensus        73 ~~~   75 (89)
T cd04979          73 HGF   75 (89)
T ss_pred             Ccc
Confidence            644

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.28  E-value=0.00017  Score=54.39  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=12.8

Q ss_pred             ccEEEccCCCCCccCcccccCCCCCCEEEccCCCCC
Q psy12044         77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ  112 (767)
Q Consensus        77 L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt  112 (767)
                      |+.|+|++|+|+.+.+ .|.+|++|+.|+|++|.|+
T Consensus         3 L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence            3444444444443321 2334444444444444333

...

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.27  E-value=0.00067  Score=59.97  Aligned_cols=81  Identities=16%  Similarity=0.282  Sum_probs=52.5

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccC-CCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQN-ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~-~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ...+.+.+|+.+.|.|.+.+.+.+.+.|...++.... .........++....  .......|.|.+++.+|.|.|.|.+
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~~   81 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVN--FSANELSISISNVSLSDEGRYTCSL   81 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEc--CCCCeeEEEEccCCcccCEEEEEEE
Confidence            3466788999999999998888899999864322110 000000011111111  1123457999999999999999999


Q ss_pred             ccCC
Q psy12044        340 ENQA  343 (767)
Q Consensus       340 ~N~~  343 (767)
                      .+..
T Consensus        82 ~~~~   85 (95)
T cd05717          82 YTMP   85 (95)
T ss_pred             ecCC
Confidence            8654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.22  E-value=0.0012  Score=58.98  Aligned_cols=87  Identities=22%  Similarity=0.372  Sum_probs=67.5

Q ss_pred             ceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ..++..|+.+.|.|.+.+.|.|. +.|.+++..+.+....     ..........++.++|++..+..+|.|.|+|.|.|
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~-----~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N   86 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDH-----YVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSN   86 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccc-----eeEEeccCceEEEEEEEEeecChhhCcEEEEEEEC
Confidence            46788999999999999999997 9999987765433321     11222223456789999999999999999999999


Q ss_pred             CCCCcccceEEEE
Q psy12044        342 QAGSTSSNYTIRI  354 (767)
Q Consensus       342 ~~G~s~~s~sL~V  354 (767)
                      ....+...+.+.|
T Consensus        87 ~~~~~s~tF~l~v   99 (101)
T cd05860          87 SDASASVTFNVYV   99 (101)
T ss_pred             CCCeEEEEEEEEE
Confidence            9888776666654

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.18  E-value=0.00052  Score=60.83  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=52.6

Q ss_pred             eecccccccccccccccCCCcEEEeecCeec-cCCC--c----ccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPI-QNES--M----SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l-~~~s--~----~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      .+..|++++|.|.+.+.+.+.+.|.+.++.. ....  +    .......+.....+.......|.|.++..+|.|+|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            4568999999999999999999998654221 1111  0    0000011111112223345679999999999999999


Q ss_pred             eeccCCCC
Q psy12044        338 VAENQAGS  345 (767)
Q Consensus       338 vA~N~~G~  345 (767)
                      .+.|..+.
T Consensus        83 ~v~~~~~~   90 (94)
T cd07690          83 EVEDKKEE   90 (94)
T ss_pred             EECCccce
Confidence            99887553

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG3653|consensus

Probab=97.18  E-value=0.00035  Score=77.02  Aligned_cols=26  Identities=23%  Similarity=0.088  Sum_probs=23.0

Q ss_pred             CCccccCCCCcceEEeeCCceEEEec
Q psy12044        448 GYIIADGHNDMMLYATDSGILVATNN  473 (767)
Q Consensus       448 ~nlIG~GgfG~VYKG~~dG~~VA~~~  473 (767)
                      .-+||+|+||.||||.-+++.||+|-
T Consensus       215 ~eli~~Grfg~V~KaqL~~~~VAVKi  240 (534)
T KOG3653|consen  215 LELIGRGRFGCVWKAQLDNRLVAVKI  240 (534)
T ss_pred             HHHhhcCccceeehhhccCceeEEEe
Confidence            34899999999999996669999987

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.11  E-value=0.0017  Score=72.18  Aligned_cols=133  Identities=21%  Similarity=0.258  Sum_probs=78.3

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC-CCCCCCCCCCCCCCCCcE
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN-VLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N-~Lt~l~p~~f~~l~~L~~  127 (767)
                      .+++.|++++|.|+.++  .+    ..+|+.|.+++|.--...|+.+  ..+|+.|+|++| .+..++       .+|+.
T Consensus        52 ~~l~~L~Is~c~L~sLP--~L----P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~  116 (426)
T PRK15386         52 RASGRLYIKDCDIESLP--VL----PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRS  116 (426)
T ss_pred             cCCCEEEeCCCCCcccC--CC----CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccce
Confidence            56778888888887776  22    2468888887743333334433  247888888877 555433       34667


Q ss_pred             EECCCCcCcccccCCcCCC-CCccEEeccCCCcc-cc-chhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPL-SYLVTLELSKCGIE-VI-EDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN  204 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l-~~L~~L~Ls~N~L~-~i-~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N  204 (767)
                      |+|+.|.+..+.     .+ ++|+.|.+.+++.. .. .+..  -..+|+.|++++|....+|..  .+.+|+.|.++.|
T Consensus       117 L~L~~n~~~~L~-----~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~--LP~SLk~L~ls~n  187 (426)
T PRK15386        117 LEIKGSATDSIK-----NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEK--LPESLQSITLHIE  187 (426)
T ss_pred             EEeCCCCCcccc-----cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCccc--ccccCcEEEeccc
Confidence            777766544321     12 35667776443211 10 0110  125788888888876665543  3467888888765


Q ss_pred             C
Q psy12044        205 P  205 (767)
Q Consensus       205 ~  205 (767)
                      .
T Consensus       188 ~  188 (426)
T PRK15386        188 Q  188 (426)
T ss_pred             c
Confidence            3

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.10  E-value=0.00079  Score=58.15  Aligned_cols=64  Identities=23%  Similarity=0.331  Sum_probs=49.9

Q ss_pred             eecccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        265 EIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      .+.+|+.++|.|.+.. .+...+.|.+++..+...                  .....|.|.++..+|+|.|.|.+.+..
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------------------~~~~~l~I~~~~~~dsG~Y~C~~~~~~   71 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------------------HSNSNLSIPQATLSDSGSYHCSGIIGS   71 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------------------CCCceEEECccCHHHCEEEEEEEEeCC
Confidence            5778999999999854 566789999987544210                  113579999999999999999999887


Q ss_pred             CCc
Q psy12044        344 GST  346 (767)
Q Consensus       344 G~s  346 (767)
                      |..
T Consensus        72 ~~~   74 (83)
T cd05753          72 YDY   74 (83)
T ss_pred             cee
Confidence            743

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>KOG3665|consensus

Probab=97.09  E-value=0.0003  Score=83.92  Aligned_cols=133  Identities=20%  Similarity=0.195  Sum_probs=76.3

Q ss_pred             CCccEEEeeCCCCC-CCCchhhhccCCCCccEEEccCCCCCccC-cccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCc
Q psy12044         49 PNTQVLDYTGNNLK-TLHNEKFQKMGLVNLQKIYLSRCRISVID-SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLM  126 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~-~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~-p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~  126 (767)
                      .+|+.|++++...- .-.+..++. -|++|+.|.+.+=.+.... -..+.++++|..||+|+.+++.+  ..++.|++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~-~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGT-MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhh-hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            45677777765432 222333333 3677777777765554322 23355677777777777777766  4566777777


Q ss_pred             EEECCCCcCccc-ccCCcCCCCCccEEeccCCCccccch------hhhcCCCCCCeeeccCCccc
Q psy12044        127 KLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCGIEVIED------AAFVGLDSLEWLKLDNNKIT  184 (767)
Q Consensus       127 ~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~L~~i~~------~~~~~l~~L~~L~Ls~N~Lt  184 (767)
                      .|.+.+=.+..- .-..+.+|++|+.||+|.........      +.-..|+.|+.||.|++.+.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            777666555431 11224457777777777654332221      11123677777777766554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.03  E-value=0.0022  Score=71.25  Aligned_cols=131  Identities=18%  Similarity=0.255  Sum_probs=86.1

Q ss_pred             eEEEecCCCccccccCCCCCccEEEeeC-CCCCCCCchhhhccCCCCccEEEccCC-CCCccCcccccCCCCCCEEEccC
Q psy12044         31 QTVECVNKSLITVVEGMDPNTQVLDYTG-NNLKTLHNEKFQKMGLVNLQKIYLSRC-RISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~~l~~~L~~L~Ls~-N~L~~l~~~~f~~~~L~~L~~L~Ls~N-~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      ..++-++..+..+| .++.+|+.|.+++ +.++.++ ..+    ..+|+.|+|++| .|..+ |      .+|+.|+|+.
T Consensus        55 ~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP-~~L----P~nLe~L~Ls~Cs~L~sL-P------~sLe~L~L~~  121 (426)
T PRK15386         55 GRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLP-GSI----PEGLEKLTVCHCPEISGL-P------ESVRSLEIKG  121 (426)
T ss_pred             CEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCC-chh----hhhhhheEccCccccccc-c------cccceEEeCC
Confidence            45666677899998 6889999999998 4455444 333    258999999998 66543 3      3588888887


Q ss_pred             CCCCCCCCCCCCCC-CCCcEEECCCCc-Ccccc-cCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc
Q psy12044        109 NVLQTVPSDTFPDY-PSLMKLTLSGNP-IKQIK-TGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT  184 (767)
Q Consensus       109 N~Lt~l~p~~f~~l-~~L~~L~Ls~N~-l~~l~-~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt  184 (767)
                      |.+..+.     .+ ++|+.|.+.+++ ..... +..  -..+|+.|++++|....++. .+  ..+|+.|.++.|...
T Consensus       122 n~~~~L~-----~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~-~L--P~SLk~L~ls~n~~~  190 (426)
T PRK15386        122 SATDSIK-----NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPE-KL--PESLQSITLHIEQKT  190 (426)
T ss_pred             CCCcccc-----cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcc-cc--cccCcEEEecccccc
Confidence            7654322     22 367788875433 21111 111  12689999999988665432 22  258999999887543

>KOG1025|consensus

Probab=97.00  E-value=0.00026  Score=82.37  Aligned_cols=27  Identities=15%  Similarity=0.129  Sum_probs=21.7

Q ss_pred             CCCccccCCCCcceEEe--eCCc----eEEEec
Q psy12044        447 GGYIIADGHNDMMLYAT--DSGI----LVATNN  473 (767)
Q Consensus       447 ~~nlIG~GgfG~VYKG~--~dG~----~VA~~~  473 (767)
                      ...+||+|+||.||||.  |.|.    .||++-
T Consensus       700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKv  732 (1177)
T KOG1025|consen  700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKV  732 (1177)
T ss_pred             hhceeccccceeEEeeeEecCCceecceeEEEE
Confidence            34489999999999999  8885    456655

>KOG2982|consensus

Probab=96.96  E-value=0.0004  Score=72.50  Aligned_cols=43  Identities=12%  Similarity=-0.039  Sum_probs=23.4

Q ss_pred             CCCCeeeccCCccccccCCCC--CCCCcccccCCCCCCCchhhhh
Q psy12044        171 DSLEWLKLDNNKITTISGSNI--LPTGLHGIDLHHNPWTCDCLLI  213 (767)
Q Consensus       171 ~~L~~L~Ls~N~Lt~ip~~~~--~~~~L~~L~Ls~N~l~C~c~l~  213 (767)
                      +++..+-+..|.|.....+-.  ..+.+.-|+|+.|.+-.+-.+.
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD  243 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVD  243 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHH
Confidence            455556666666654432221  2355566777777776544433

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=96.95  E-value=0.0015  Score=57.91  Aligned_cols=72  Identities=19%  Similarity=0.297  Sum_probs=52.7

Q ss_pred             cceeeccccccccccc-ccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC-ceeEee
Q psy12044        262 FYLEIQEGKNVSLLCK-VSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG-TFVCVA  339 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~-a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G-tY~CvA  339 (767)
                      ..+.+.+|+.+.|.|. ..+.|.|.+.|..+......     . ..++..      ...+.|.|.++...|.| .|.|.|
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~-----~-~~Ri~~------~~~GnL~fs~v~~~D~g~~Y~C~a   78 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT-----Q-DERVSM------GQNGNLYFANVEEQDSHPDYICHA   78 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc-----c-cccEEE------CCCceEEEEEEehhhCCCCeEEEE
Confidence            3567889999999997 69999999999975432211     0 111111      12368999999999999 799999


Q ss_pred             ccCCCC
Q psy12044        340 ENQAGS  345 (767)
Q Consensus       340 ~N~~G~  345 (767)
                      .|....
T Consensus        79 ~~~~~~   84 (95)
T cd05845          79 HFPGLR   84 (95)
T ss_pred             Eccccc
Confidence            987644

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=96.87  E-value=0.0022  Score=56.41  Aligned_cols=81  Identities=23%  Similarity=0.345  Sum_probs=50.4

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc-C
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN-Q  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N-~  342 (767)
                      ....+|+.+.|.|.. ..|.+.+.|+++..............        ......+.|.|.++..+|.|.|.|.+.+ .
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~--------r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~   76 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEE--------RLIHTERGLLLRSLQRSDAGVYTCTAVEHS   76 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccc--------cEEEecCeEEEeeCChhHCEEEEEEEEccC
Confidence            456789999999996 47899999998322111000000000        0111234599999999999999999974 4


Q ss_pred             CCCcccceEEE
Q psy12044        343 AGSTSSNYTIR  353 (767)
Q Consensus       343 ~G~s~~s~sL~  353 (767)
                      .+.....+.|.
T Consensus        77 ~~~~~~~~~l~   87 (91)
T cd05871          77 FSQTLAKYTLH   87 (91)
T ss_pred             CeEEEEEEEEE
Confidence            44444434333

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>KOG2739|consensus

Probab=96.87  E-value=0.00043  Score=71.33  Aligned_cols=85  Identities=27%  Similarity=0.414  Sum_probs=39.8

Q ss_pred             CCCccEEEccCCCCCccCcccccCCCCCCEEEccCC--CCCCCCCCCCCCCCCCcEEECCCCcCccccc-CCcCCCCCcc
Q psy12044         74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN--VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT-GAFQPLSYLV  150 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N--~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~  150 (767)
                      +..|+.|.+.+..++.+.  .|..|++|+.|.++.|  .+.+-.+-....+++|++|+|++|+|.-+.. ..+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            345555555555555442  2445556666666666  3332222222334566666666665543211 1123344455


Q ss_pred             EEeccCCCcc
Q psy12044        151 TLELSKCGIE  160 (767)
Q Consensus       151 ~L~Ls~N~L~  160 (767)
                      .|++.+|..+
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            5555555443

>KOG0196|consensus

Probab=96.85  E-value=0.00063  Score=79.05  Aligned_cols=74  Identities=19%  Similarity=0.161  Sum_probs=46.8

Q ss_pred             CCcccHHHHHhcccCCCCCCC---------CccccCCCCcceEEe--eCC---ceEEEec-cccC---------CCcchh
Q psy12044        428 SPKYTSVNATSATCMDKVNGG---------YIIADGHNDMMLYAT--DSG---ILVATNN-MNTY---------PSYSIS  483 (767)
Q Consensus       428 ~~~fs~~El~~AT~~nnFs~~---------nlIG~GgfG~VYKG~--~dG---~~VA~~~-~~~~---------~~~~~~  483 (767)
                      ..-+||+|-..|-  ..|..+         .+||.|-||.||+|.  ..|   ..||++. .+.|         +.++++
T Consensus       607 iDP~TYEDPnqAv--reFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIM  684 (996)
T KOG0196|consen  607 IDPHTYEDPNQAV--REFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIM  684 (996)
T ss_pred             cCCccccCccHHH--HHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhc
Confidence            3457888877776  566422         589999999999998  445   5799988 4444         444443


Q ss_pred             hhhhhCCCCcccchhhccccc
Q psy12044        484 YQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       484 ~~~e~npdlin~~e~~~~~~~  504 (767)
                      + |=.+|++|-=--+|-|-++
T Consensus       685 G-QFdHPNIIrLEGVVTks~P  704 (996)
T KOG0196|consen  685 G-QFDHPNIIRLEGVVTKSKP  704 (996)
T ss_pred             c-cCCCCcEEEEEEEEecCce
Confidence            3 2236666654334444333

>KOG3513|consensus

Probab=96.85  E-value=0.0017  Score=78.63  Aligned_cols=80  Identities=29%  Similarity=0.442  Sum_probs=63.4

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|..+.+.|.+.+.|.+.+.|.+.+..+.....       +...+      .++|.|.+++.+|.|.|+|+|.|..
T Consensus       436 ~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r-------~~i~e------dGtL~I~n~t~~DaG~YtC~A~N~~  502 (1051)
T KOG3513|consen  436 VMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGR-------IRILE------DGTLEISNVTRSDAGKYTCVAENKL  502 (1051)
T ss_pred             EEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCce-------EEECC------CCcEEecccCcccCcEEEEEEEccc
Confidence            3567899999999999999999999997763322211       22222      3579999999999999999999999


Q ss_pred             CCcccceEEEEEe
Q psy12044        344 GSTSSNYTIRIVL  356 (767)
Q Consensus       344 G~s~~s~sL~V~~  356 (767)
                      |.+.+...|.|.-
T Consensus       503 G~a~~~~~L~Vkd  515 (1051)
T KOG3513|consen  503 GKAESTGNLIVKD  515 (1051)
T ss_pred             CccceEEEEEEec
Confidence            9999888776653

>KOG2120|consensus

Probab=96.80  E-value=6.3e-05  Score=78.33  Aligned_cols=86  Identities=17%  Similarity=0.096  Sum_probs=60.9

Q ss_pred             CccEEEeeCCCCCCCCc-hhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCC-CCCCCC-CCCCCCCCCc
Q psy12044         50 NTQVLDYTGNNLKTLHN-EKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNV-LQTVPS-DTFPDYPSLM  126 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~-~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~-Lt~l~p-~~f~~l~~L~  126 (767)
                      .|++|||++..|+.-.- ..+.  .+.+|+.|.|.++++...+...+.+-.+|+.|+|+.+. |+...- -.|.+++.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs--~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILS--QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHH--HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            47888998888774321 2233  37788999999999988777778888889999988764 443211 1256778888


Q ss_pred             EEECCCCcCcc
Q psy12044        127 KLTLSGNPIKQ  137 (767)
Q Consensus       127 ~L~Ls~N~l~~  137 (767)
                      .|+|+++.+..
T Consensus       264 ~LNlsWc~l~~  274 (419)
T KOG2120|consen  264 ELNLSWCFLFT  274 (419)
T ss_pred             hcCchHhhccc
Confidence            88888887653

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=96.79  E-value=0.00042  Score=53.78  Aligned_cols=49  Identities=33%  Similarity=0.681  Sum_probs=38.3

Q ss_pred             CCCCchhhhhhhhhhhccCC-CCCccCCCCCCCCCCCCCcccccccccccC
Q psy12044        204 NPWTCDCLLIGLRRWLESTK-TPMAIDPICSVPPRLSSVTIKQLSIDELAC  253 (767)
Q Consensus       204 N~l~C~c~l~~l~~~l~~~~-~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C  253 (767)
                      |+|.|+|.+.|+..|+.... ........|..|..+. ..+..+...++.|
T Consensus         1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~-~~l~~~~~~~~~C   50 (51)
T smart00082        1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR-GPLLELLHSEFKC   50 (51)
T ss_pred             CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH-hHHHcCCHhhCCC
Confidence            89999999999999998832 2233578899999888 5577777666666

>smart00410 IG_like Immunoglobulin like

Probab=96.77  E-value=0.0065  Score=50.69  Aligned_cols=77  Identities=34%  Similarity=0.620  Sum_probs=54.7

Q ss_pred             eeecccccccccccccccCCCcEEEeec-CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFD-GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~-g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+..|+.+.|.|.+.+.+.+.+.|.++ +..+.....       ........   ...|.|.++...|.|.|.|.+.+.
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~-------~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~v~~~   73 (86)
T smart00410        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGR-------FSVSRSGS---NSTLTISNVTPEDSGTYTCAATNS   73 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCc-------EEEEEcCC---eeEEEEEeeccccCeEEEEEEEcC
Confidence            4567899999999999888899999997 555431110       11111111   467999999999999999999977


Q ss_pred             CCCcccce
Q psy12044        343 AGSTSSNY  350 (767)
Q Consensus       343 ~G~s~~s~  350 (767)
                      .+.....+
T Consensus        74 ~~~~~~~~   81 (86)
T smart00410       74 SGSASSTT   81 (86)
T ss_pred             CCeEEEEE
Confidence            66654443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=96.77  E-value=0.0065  Score=50.69  Aligned_cols=77  Identities=34%  Similarity=0.620  Sum_probs=54.7

Q ss_pred             eeecccccccccccccccCCCcEEEeec-CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFD-GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~-g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+..|+.+.|.|.+.+.+.+.+.|.++ +..+.....       ........   ...|.|.++...|.|.|.|.+.+.
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~-------~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~v~~~   73 (86)
T smart00409        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGR-------FSVSRSGS---NSTLTISNVTPEDSGTYTCAATNS   73 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCc-------EEEEEcCC---eeEEEEEeeccccCeEEEEEEEcC
Confidence            4567899999999999888899999997 555431110       11111111   467999999999999999999977


Q ss_pred             CCCcccce
Q psy12044        343 AGSTSSNY  350 (767)
Q Consensus       343 ~G~s~~s~  350 (767)
                      .+.....+
T Consensus        74 ~~~~~~~~   81 (86)
T smart00409       74 SGSASSTT   81 (86)
T ss_pred             CCeEEEEE
Confidence            66654443

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=96.77  E-value=0.0019  Score=57.39  Aligned_cols=73  Identities=19%  Similarity=0.456  Sum_probs=52.4

Q ss_pred             eeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+.+|..+.|.|.. .+.|.+.+.|.+++..+.-.   .+ .+.+.      ....+.|.+.+++.+|.|.|.|.|.|.
T Consensus        13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~---~d-~r~~~------~~~~G~L~fs~v~~~D~g~Y~C~A~n~   82 (96)
T cd05727          13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP---ED-GRRFV------SQTNGNLYIAKVEASDRGNYSCFVSSP   82 (96)
T ss_pred             eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc---cC-CCeEE------eCCCCcEEEeecCHhhCceeEEEEEec
Confidence            457789999999965 67899999999986432110   00 11111      113468999999999999999999998


Q ss_pred             CCCc
Q psy12044        343 AGST  346 (767)
Q Consensus       343 ~G~s  346 (767)
                      ....
T Consensus        83 ~~~~   86 (96)
T cd05727          83 SSTK   86 (96)
T ss_pred             ccCC
Confidence            6544

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=96.60  E-value=0.0014  Score=54.95  Aligned_cols=61  Identities=34%  Similarity=0.734  Sum_probs=48.0

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|+.+.|.|.+.+.|...+.|.+++..+...                    ...+.+..+..+|.|.|.|.+.+..
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~y~C~~~~~~   68 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------------------QNGLFIPNVSPEDSGNYTCRASNGS   68 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------------------SSEEEESSEEGGGTEEEEEEEEETT
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------------------eeeeeeeeeccccCEEEEEEEEeCC
Confidence            45678999999999999988999999977555311                    1116677888999999999998855


Q ss_pred             C
Q psy12044        344 G  344 (767)
Q Consensus       344 G  344 (767)
                      +
T Consensus        69 ~   69 (80)
T PF13895_consen   69 G   69 (80)
T ss_dssp             E
T ss_pred             C
Confidence            4

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.58  E-value=0.0017  Score=67.17  Aligned_cols=161  Identities=19%  Similarity=0.212  Sum_probs=107.4

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhcc--CCCCccEEEccCCCCCc---c-------CcccccCCCCCCEEEccCCCCCCCC
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKM--GLVNLQKIYLSRCRISV---I-------DSKAFRGLTNLVDLDFSHNVLQTVP  115 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~--~L~~L~~L~Ls~N~L~~---i-------~p~~f~~L~~L~~L~Ls~N~Lt~l~  115 (767)
                      ...++.++||+|.|..--...+.+.  .-.+|+..+++.-....   .       .-.++.+++.|+.++||.|.|....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            5678999999999986544444321  24567777776542221   1       1245678899999999999887654


Q ss_pred             CCC----CCCCCCCcEEECCCCcCcccccCCcC-------------CCCCccEEeccCCCccccchh----hhcCCCCCC
Q psy12044        116 SDT----FPDYPSLMKLTLSGNPIKQIKTGAFQ-------------PLSYLVTLELSKCGIEVIEDA----AFVGLDSLE  174 (767)
Q Consensus       116 p~~----f~~l~~L~~L~Ls~N~l~~l~~~~~~-------------~l~~L~~L~Ls~N~L~~i~~~----~~~~l~~L~  174 (767)
                      |..    ++.-..|.+|.|++|.+.-+-...++             .-+.|++++...|++...+..    .|..-..|.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            433    45557899999999987654433222             346789999999988765442    233335788


Q ss_pred             eeeccCCcccc--cc----CCCCCCCCcccccCCCCCCCc
Q psy12044        175 WLKLDNNKITT--IS----GSNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       175 ~L~Ls~N~Lt~--ip----~~~~~~~~L~~L~Ls~N~l~C  208 (767)
                      .+.+..|.|..  +.    ...+...+|..|||++|-|+-
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            88888887762  21    122345788999999998873

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=96.58  E-value=0.0013  Score=53.25  Aligned_cols=63  Identities=32%  Similarity=0.588  Sum_probs=42.7

Q ss_pred             cccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        269 GKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       269 G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      |+.+.|.|.+ ...+...+.|.+++.........       .....+. .....|.|.++..+|.|.|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~-------~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT-------NRSTNSV-SSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE-------EEEETTT-EEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCccee-------Eeecccc-eeeeEEEEccCCHHHCEEEEEEC
Confidence            5778999999 77788899999977554322211       0000010 01114999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>KOG2123|consensus

Probab=96.56  E-value=0.00012  Score=75.61  Aligned_cols=100  Identities=22%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCccccc-CCcCCCCCccEE
Q psy12044         74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT-GAFQPLSYLVTL  152 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L  152 (767)
                      |.+.+.|++.+|.|..+  .....|+.|+.|.|+-|+|+.+.|  |..|++|+.|+|..|.|..+.. .-+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44566677777776665  234566677777777777776653  5666777777777776665532 224556677777


Q ss_pred             eccCCCccccch-----hhhcCCCCCCeee
Q psy12044        153 ELSKCGIEVIED-----AAFVGLDSLEWLK  177 (767)
Q Consensus       153 ~Ls~N~L~~i~~-----~~~~~l~~L~~L~  177 (767)
                      .|..|...+..+     ..+.-|++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            776665544432     2233456666554

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=96.54  E-value=0.011  Score=50.68  Aligned_cols=75  Identities=31%  Similarity=0.469  Sum_probs=48.7

Q ss_pred             ccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccC-cceeeeEEEEeeeccCCCCceeEeeccCCCCcccc
Q psy12044        272 VSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEG-TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN  349 (767)
Q Consensus       272 vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g-~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s  349 (767)
                      +.|.|.+.+ .|.+.++|+++++.+......      ......+ .....+.|.+......|.+.|+|.|.|........
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~------~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~   75 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYS------KELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKE   75 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceee------eeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcE
Confidence            468899987 588899999998876532211      1111122 22334677777766778889999999887555443


Q ss_pred             eEE
Q psy12044        350 YTI  352 (767)
Q Consensus       350 ~sL  352 (767)
                      .++
T Consensus        76 ~s~   78 (82)
T cd05759          76 TSV   78 (82)
T ss_pred             EEE
Confidence            333

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.52  E-value=0.0015  Score=44.11  Aligned_cols=28  Identities=36%  Similarity=0.858  Sum_probs=22.3

Q ss_pred             CCCCCceecccCCeeEEEecCCCccccccCCC
Q psy12044         17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMD   48 (767)
Q Consensus        17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~   48 (767)
                      +||..|.|.    ...|+|++++|..+|.+|+
T Consensus         1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCS----GLTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEE----TTEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEec----CCEeECCCCCCCccCCCCc
Confidence            599999998    3679999999999998764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>PHA02785 IL-beta-binding protein; Provisional

Probab=96.51  E-value=0.0061  Score=66.77  Aligned_cols=82  Identities=21%  Similarity=0.354  Sum_probs=56.8

Q ss_pred             cceeecccccccccccccccCC---CcEEEeecCeeccCCCcccccccceeec-----ccCcceeeeEEEEeeeccCCCC
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPE---AKITWLFDGVPIQNESMSASESHAVYST-----EEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~---p~itW~~~g~~l~~~s~~~~~~~~~~~~-----~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      ....+..|..+.|.|.+.+.|.   +.+.|.+++..+.........  .+...     ........+.|.|.++..+|.|
T Consensus       228 ~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G  305 (326)
T PHA02785        228 EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDG--RISVANKIYTTDKRRVITSRLNINPVKEEDAT  305 (326)
T ss_pred             CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCce--eEEEecCccccccceeeeEEEEECCcchhcCe
Confidence            4556678999999999999886   479999999877543211110  01110     1111223568999999999999


Q ss_pred             ceeEeeccCCCC
Q psy12044        334 TFVCVAENQAGS  345 (767)
Q Consensus       334 tY~CvA~N~~G~  345 (767)
                      .|.|.|.|..|.
T Consensus       306 ~Y~C~A~n~~~~  317 (326)
T PHA02785        306 TFTCMAFTIPSI  317 (326)
T ss_pred             eeEEEEEeccCc
Confidence            999999997744

>KOG4221|consensus

Probab=96.50  E-value=0.0044  Score=75.04  Aligned_cols=88  Identities=28%  Similarity=0.474  Sum_probs=67.4

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      ..+....+.+|+.+.|.|.+.+.|.|.+.|.+++..+.-.+..        +.    ....+.|.|.+++..|.|.|+|.
T Consensus       242 ~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~r--------iv----l~g~~slliS~a~~~dSg~YtC~  309 (1381)
T KOG4221|consen  242 DEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYR--------IV----LVGGSSLLISNATDDDSGKYTCR  309 (1381)
T ss_pred             cCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceE--------EE----EecccceEEeccccccCceEEEE
Confidence            3445567889999999999999999999999998777544311        11    12346799999999999999999


Q ss_pred             eccCCCCcccceEEEEEeec
Q psy12044        339 AENQAGSTSSNYTIRIVLKE  358 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~~~  358 (767)
                      |.|..-...+...+.|..++
T Consensus       310 Atn~~D~idasaev~V~a~P  329 (1381)
T KOG4221|consen  310 ATNTNDSIDASAEVTVLAPP  329 (1381)
T ss_pred             ecCCCcccccceEEEEEcCC
Confidence            99966666666667766653

>KOG2982|consensus

Probab=96.46  E-value=0.0037  Score=65.48  Aligned_cols=106  Identities=19%  Similarity=0.235  Sum_probs=55.1

Q ss_pred             EEEeeCCCCCCCCc-hhhhccCCCCccEEEccCCCCCccC--cccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044         53 VLDYTGNNLKTLHN-EKFQKMGLVNLQKIYLSRCRISVID--SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT  129 (767)
Q Consensus        53 ~L~Ls~N~L~~l~~-~~f~~~~L~~L~~L~Ls~N~L~~i~--p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~  129 (767)
                      .|.+.++.|..... ..|+. ..+.++.|+|..|.|+.+.  ...+.+|+.|+.|+|+.|.+...+...-..+.+|+.|-
T Consensus        49 llvln~~~id~~gd~~~~~~-~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV  127 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGS-SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV  127 (418)
T ss_pred             hheecCCCCCcchhHHHHHH-HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence            44444555543332 22222 3456666677777666542  23345666667777777666655432213455666666


Q ss_pred             CCCCcCcccc-cCCcCCCCCccEEeccCCCc
Q psy12044        130 LSGNPIKQIK-TGAFQPLSYLVTLELSKCGI  159 (767)
Q Consensus       130 Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~L  159 (767)
                      |.+..+..-. ...+..++.++.|.++.|++
T Consensus       128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            6666554322 22334455566666665543

>KOG2739|consensus

Probab=96.45  E-value=0.0012  Score=67.99  Aligned_cols=89  Identities=27%  Similarity=0.264  Sum_probs=57.8

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCC--cCcccccCCcCCCCCccEEeccCCCccccch-hhhcCCC
Q psy12044         95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN--PIKQIKTGAFQPLSYLVTLELSKCGIEVIED-AAFVGLD  171 (767)
Q Consensus        95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N--~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~  171 (767)
                      +-.+..|+.|.+.+..++.+.  .|..|++|+.|.++.|  ++.+-.......+++|++|+|++|.|..+.. ..+..+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            445667777777777777663  4667888888888888  4443333334445888888888887764311 1244556


Q ss_pred             CCCeeeccCCcccc
Q psy12044        172 SLEWLKLDNNKITT  185 (767)
Q Consensus       172 ~L~~L~Ls~N~Lt~  185 (767)
                      +|..|++.+|..+.
T Consensus       117 nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTN  130 (260)
T ss_pred             chhhhhcccCCccc
Confidence            67777777765554

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=96.36  E-value=0.0074  Score=53.71  Aligned_cols=36  Identities=17%  Similarity=0.303  Sum_probs=28.7

Q ss_pred             eeeEEEEeeeccCCCCceeEeeccCCCCcccceEEE
Q psy12044        318 KKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIR  353 (767)
Q Consensus       318 ~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~  353 (767)
                      ...+|.|.++..+|.|+|.|.+.+..+...+.+.|.
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~   98 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELK   98 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEE
Confidence            456899999999999999999998776655444443

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=96.28  E-value=0.004  Score=43.81  Aligned_cols=31  Identities=35%  Similarity=0.849  Sum_probs=27.1

Q ss_pred             CCCCCceecccCCeeEEEecCCCccccccCCCCCc
Q psy12044         17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNT   51 (767)
Q Consensus        17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L   51 (767)
                      +||..|.|.    ...|+|++++|..+|.+++.+.
T Consensus         1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~iP~~t   31 (33)
T smart00013        1 ACPAPCNCS----GTAVDCSGRGLTEVPLDLPPDT   31 (33)
T ss_pred             CcCCCCEEC----CCEeEeCCCCcCccCCCCCccc
Confidence            599999997    3679999999999999988654

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=96.25  E-value=0.016  Score=53.45  Aligned_cols=89  Identities=19%  Similarity=0.270  Sum_probs=54.9

Q ss_pred             ceeeccccccccccccccc----CCCcEEEeecCee------cc---CCCccc----ccccceeecccCcceeeeEEEEe
Q psy12044        263 YLEIQEGKNVSLLCKVSAI----PEAKITWLFDGVP------IQ---NESMSA----SESHAVYSTEEGTEIKKSELLIY  325 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~----P~p~itW~~~g~~------l~---~~s~~~----~~~~~~~~~~~g~~~~~s~L~I~  325 (767)
                      .+.+..|+.+.|.|.....    +...+.|.+....      +.   +.....    ....+..+..+ ......+|.|.
T Consensus         7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~-~~~~daSI~I~   85 (116)
T cd05879           7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGN-PSRKDGSIVIH   85 (116)
T ss_pred             eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCC-CCcCeeEEEEc
Confidence            4567889999999998663    3468999662210      10   000000    00112222221 13456789999


Q ss_pred             eeccCCCCceeEeeccCCCCcccceEE
Q psy12044        326 NSNIDDNGTFVCVAENQAGSTSSNYTI  352 (767)
Q Consensus       326 nvs~sD~GtY~CvA~N~~G~s~~s~sL  352 (767)
                      +++.+|.|+|+|...|..+.......+
T Consensus        86 nv~~sD~G~Y~C~v~n~p~~~~~~~~~  112 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPPDIVGKSSQV  112 (116)
T ss_pred             cCCcccCEEEEEEEEcCCCcCCceeEE
Confidence            999999999999999987765544433

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.22  E-value=0.0031  Score=65.27  Aligned_cols=191  Identities=17%  Similarity=0.131  Sum_probs=113.8

Q ss_pred             HHHhhhccCCCCCceecccCCeeEEEecCCCcc-ccccCC------CCCccEEEeeCCCCCCCCchhhhc----------
Q psy12044          9 ATIIKIVSACPTSCICKWKGGKQTVECVNKSLI-TVVEGM------DPNTQVLDYTGNNLKTLHNEKFQK----------   71 (767)
Q Consensus         9 ~~~~~~~~~CP~~C~C~~~g~~~~v~C~~~~L~-~iP~~l------~~~L~~L~Ls~N~L~~l~~~~f~~----------   71 (767)
                      .+++++-..||.         .++|+.+++.+. ..|+.+      ...+.+|.|++|.+.-+-...+++          
T Consensus        82 ~~Ll~aLlkcp~---------l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKK  152 (388)
T COG5238          82 VMLLKALLKCPR---------LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKK  152 (388)
T ss_pred             HHHHHHHhcCCc---------ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhh
Confidence            445666677884         245777766554 344433      357888888888887655444431          


Q ss_pred             -cCCCCccEEEccCCCCCccC----cccccCCCCCCEEEccCCCCCCCCC-----CCCCCCCCCcEEECCCCcCccccc-
Q psy12044         72 -MGLVNLQKIYLSRCRISVID----SKAFRGLTNLVDLDFSHNVLQTVPS-----DTFPDYPSLMKLTLSGNPIKQIKT-  140 (767)
Q Consensus        72 -~~L~~L~~L~Ls~N~L~~i~----p~~f~~L~~L~~L~Ls~N~Lt~l~p-----~~f~~l~~L~~L~Ls~N~l~~l~~-  140 (767)
                       ..-+.|+.+....|++..-.    ...|..-.+|+++.+..|.|.--.-     ..+..+.+|+.|+|..|.++.... 
T Consensus       153 aa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~  232 (388)
T COG5238         153 AADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR  232 (388)
T ss_pred             hccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence             13456788888888776532    1223444678888888886653211     112345788888888888775432 


Q ss_pred             ---CCcCCCCCccEEeccCCCccccchhhh----c--CCCCCCeeeccCCccc-cccCCCC-------CCCCcccccCCC
Q psy12044        141 ---GAFQPLSYLVTLELSKCGIEVIEDAAF----V--GLDSLEWLKLDNNKIT-TISGSNI-------LPTGLHGIDLHH  203 (767)
Q Consensus       141 ---~~~~~l~~L~~L~Ls~N~L~~i~~~~~----~--~l~~L~~L~Ls~N~Lt-~ip~~~~-------~~~~L~~L~Ls~  203 (767)
                         .++...+.|+.|.|..|-++.--..++    .  ..++|..|.+.+|.+. ++...++       ..+-|..|.+.|
T Consensus       233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng  312 (388)
T COG5238         233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG  312 (388)
T ss_pred             HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence               334455667888888887764433222    1  2467777777777554 2211111       234556677777


Q ss_pred             CCCCc
Q psy12044        204 NPWTC  208 (767)
Q Consensus       204 N~l~C  208 (767)
                      |.+.=
T Consensus       313 Nr~~E  317 (388)
T COG5238         313 NRIKE  317 (388)
T ss_pred             Ccchh
Confidence            87763

>KOG3665|consensus

Probab=96.13  E-value=0.003  Score=75.59  Aligned_cols=131  Identities=20%  Similarity=0.220  Sum_probs=90.6

Q ss_pred             CCccEEEccCCCCCc--cCcccccCCCCCCEEEccCCCCCCCC-CCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccE
Q psy12044         75 VNLQKIYLSRCRISV--IDSKAFRGLTNLVDLDFSHNVLQTVP-SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT  151 (767)
Q Consensus        75 ~~L~~L~Ls~N~L~~--i~p~~f~~L~~L~~L~Ls~N~Lt~l~-p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  151 (767)
                      .+|+.|+|++...-.  +.-..-.-||+|+.|.+++-.+..-. ...+.++++|..||+|+.+++.+  ..++.|.+|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            578888888764432  22233345789999999876654321 12345778999999999999887  45778899999


Q ss_pred             EeccCCCccc-cchhhhcCCCCCCeeeccCCcccccc-------CCCCCCCCcccccCCCCCCC
Q psy12044        152 LELSKCGIEV-IEDAAFVGLDSLEWLKLDNNKITTIS-------GSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       152 L~Ls~N~L~~-i~~~~~~~l~~L~~L~Ls~N~Lt~ip-------~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |.+.+=.+.. ..-..+.+|++|+.||+|.......+       +....++.|+.||.++..+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            8888766654 22234677999999999987554322       11123578999999988765

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=96.08  E-value=0.016  Score=51.49  Aligned_cols=75  Identities=19%  Similarity=0.345  Sum_probs=50.4

Q ss_pred             eecccccccccccc-c----ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        265 EIQEGKNVSLLCKV-S----AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       265 ~v~~G~~vsL~C~a-~----g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .+..|....|.|.- .    ..+.+.++|++++..+......      +..     ......|.|.++..+|.|.|+|.+
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~------~~~-----~~~~~~L~I~~v~~~D~G~YtC~~   74 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEK------FYS-----LKGSTYLHIIDVSLNDSGYYTCKL   74 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcc------eEe-----cCCCCEEEEEEcChhhCEEEEEEE
Confidence            34567777888852 2    3466799999999776533211      000     011235999999999999999999


Q ss_pred             ccCCCCcccce
Q psy12044        340 ENQAGSTSSNY  350 (767)
Q Consensus       340 ~N~~G~s~~s~  350 (767)
                      .+..|...-++
T Consensus        75 ~~~~~g~~y~v   85 (95)
T cd05897          75 QFTHEGKKYNI   85 (95)
T ss_pred             EEeeCCEEEEE
Confidence            99876654333

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=96.08  E-value=0.0032  Score=51.90  Aligned_cols=57  Identities=33%  Similarity=0.573  Sum_probs=40.9

Q ss_pred             ccccccccccC-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        272 VSLLCKVSAIP-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       272 vsL~C~a~g~P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      +.|.|.+.+.+ .+.+.|.. ..            ..............+.|.+.++..+|.|.|.|+|.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~~-~~------------~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWYD-SN------------PSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEET-EE------------EEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEEe-cC------------CceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            89999999988 88999991 00            001111122234567899999999999999999976

...

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=96.04  E-value=0.01  Score=61.46  Aligned_cols=68  Identities=21%  Similarity=0.389  Sum_probs=50.4

Q ss_pred             eeecccccccccccccc-----cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        264 LEIQEGKNVSLLCKVSA-----IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g-----~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      ..+.+|..+.|.|.+.+     .|.|.++|.+++..+.....       +...     ...+.|.|.++..+|.|.|+|.
T Consensus       139 ~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r-------~~~~-----~~~~~L~I~~V~~~DsG~YtC~  206 (227)
T PHA02826        139 YQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR-------IQLR-----NNNSTLVIKSATHDDSGIYTCN  206 (227)
T ss_pred             ceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC-------EEEe-----CCCCEEEECcCCHHhCEEEEEE
Confidence            34567999999998763     45789999999987743321       1111     1235799999999999999999


Q ss_pred             eccCC
Q psy12044        339 AENQA  343 (767)
Q Consensus       339 A~N~~  343 (767)
                      +....
T Consensus       207 a~~~~  211 (227)
T PHA02826        207 LRFNK  211 (227)
T ss_pred             EEEeE
Confidence            98754

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.02  E-value=0.011  Score=52.54  Aligned_cols=79  Identities=14%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccC-CCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQN-ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~-~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ..++++.+|+.+.|.|.+.......+.|...++.+.. .........++.....  .....+|.|.++..+|.|.|.|.+
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~--~~~~~tL~I~~vq~~D~G~Y~Cqv   81 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF--SSNELRVSLSNVSLSDEGRYFCQL   81 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC--CCCEEEEEECcCCcccCEEEEEEE
Confidence            3467888999999999999988888999886643321 1111111112222211  123457999999999999999998


Q ss_pred             cc
Q psy12044        340 EN  341 (767)
Q Consensus       340 ~N  341 (767)
                      ..
T Consensus        82 ~t   83 (95)
T cd05881          82 YT   83 (95)
T ss_pred             Ec
Confidence            64

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=95.89  E-value=0.016  Score=52.28  Aligned_cols=86  Identities=17%  Similarity=0.295  Sum_probs=50.3

Q ss_pred             cccccccccccccC------CCcEEEeecC---e---ecc--CCCc-ccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        269 GKNVSLLCKVSAIP------EAKITWLFDG---V---PIQ--NESM-SASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       269 G~~vsL~C~a~g~P------~p~itW~~~g---~---~l~--~~s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      |+.++|.|.....+      .+.+.|.+..   .   .+.  .... .....................|.|.+++.+|.|
T Consensus         2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G   81 (106)
T cd05714           2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG   81 (106)
T ss_pred             CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence            78899999876653      5689999852   1   010  0000 000000001111112335678999999999999


Q ss_pred             ceeEeeccCCCCcccceEEEE
Q psy12044        334 TFVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       334 tY~CvA~N~~G~s~~s~sL~V  354 (767)
                      +|.|.+.+..+.....+.|.|
T Consensus        82 ~Y~C~v~~~~~~~~~~v~L~V  102 (106)
T cd05714          82 RYRCEVIDGIEDEQDTVELEV  102 (106)
T ss_pred             EEEEEEEcCCCceEEEEEEEE
Confidence            999999986555444444443

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>KOG2123|consensus

Probab=95.82  E-value=0.00066  Score=70.31  Aligned_cols=82  Identities=30%  Similarity=0.308  Sum_probs=58.6

Q ss_pred             CCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccch-hhhcCCCCCCee
Q psy12044         98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED-AAFVGLDSLEWL  176 (767)
Q Consensus        98 L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~~L~~L  176 (767)
                      +.+.+.|++.++.|+.+.  ....|+.|+.|.||-|+|+.+.+  |..+++|+.|+|..|.|..+.. .-+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            556777888888887763  35577888888888888887765  6677888888888887776643 235566777777


Q ss_pred             eccCCcc
Q psy12044        177 KLDNNKI  183 (767)
Q Consensus       177 ~Ls~N~L  183 (767)
                      .|..|.-
T Consensus        94 WL~ENPC  100 (388)
T KOG2123|consen   94 WLDENPC  100 (388)
T ss_pred             hhccCCc
Confidence            7666643

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=95.80  E-value=0.052  Score=46.58  Aligned_cols=68  Identities=19%  Similarity=0.263  Sum_probs=48.4

Q ss_pred             cccccccc-ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcc
Q psy12044        272 VSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       272 vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~  347 (767)
                      +.|.|... +.|.+.|+|+++++.+.......        .........++|.+.-....|.+.|+|.|.|.++...
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~--------~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~   70 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQ--------ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQ   70 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccc--------cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence            46788764 57889999999999885432110        1112223466789988888889999999999987654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=95.77  E-value=0.027  Score=51.63  Aligned_cols=86  Identities=14%  Similarity=0.195  Sum_probs=49.7

Q ss_pred             ccccccccccccccC------------CCcEEEeec--Ce---ecc-C-CC--cccccccceeecccCcceeeeEEEEee
Q psy12044        268 EGKNVSLLCKVSAIP------------EAKITWLFD--GV---PIQ-N-ES--MSASESHAVYSTEEGTEIKKSELLIYN  326 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P------------~p~itW~~~--g~---~l~-~-~s--~~~~~~~~~~~~~~g~~~~~s~L~I~n  326 (767)
                      .|++++|.|......            .+.|.|.+.  +.   .+. . ..  +......++.+...........|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            378889999876432            468999973  21   110 0 00  010111122222222234567899999


Q ss_pred             eccCCCCceeEeeccCCCCcccceEEE
Q psy12044        327 SNIDDNGTFVCVAENQAGSTSSNYTIR  353 (767)
Q Consensus       327 vs~sD~GtY~CvA~N~~G~s~~s~sL~  353 (767)
                      +..+|.|+|.|.+..........+.+.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~  107 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQ  107 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEE
Confidence            999999999999986544444444333

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=95.75  E-value=0.022  Score=51.28  Aligned_cols=86  Identities=19%  Similarity=0.307  Sum_probs=52.3

Q ss_pred             ccccccccccccccC------CCcEEEeecCe---e-----ccCCCc---ccccccceeecccCcceeeeEEEEeeeccC
Q psy12044        268 EGKNVSLLCKVSAIP------EAKITWLFDGV---P-----IQNESM---SASESHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P------~p~itW~~~g~---~-----l~~~s~---~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      .|+.++|.|.....+      ...+.|.+...   .     +.....   ......++.+.  ........|.|.++..+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~sL~I~~v~~~   78 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR--RAHDLDASLVITDLRLE   78 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEec--CCCCCcEEEEEccCChH
Confidence            378899999876552      45799998421   0     011000   00001112221  11233568999999999


Q ss_pred             CCCceeEeeccCCCCcccceEEEEE
Q psy12044        331 DNGTFVCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       331 D~GtY~CvA~N~~G~s~~s~sL~V~  355 (767)
                      |.|+|.|.+.+..+.....+.+.|.
T Consensus        79 DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          79 DYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             HCEEEEEEEEecccceEEEEEEEEE
Confidence            9999999999877776666665554

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=95.68  E-value=0.014  Score=60.55  Aligned_cols=91  Identities=16%  Similarity=0.166  Sum_probs=57.1

Q ss_pred             ceeecccccccccccccccC-----------CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIP-----------EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P-----------~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      ...+.+|+.+.|.|.+.+.+           .+.+.|.+.+....- .......................|.|.++..+|
T Consensus        31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v-~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFV-RDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEE-EcCCCccccccccccceecCCCeEEECCCChHH
Confidence            45778999999999986643           458999997543110 000000000000001111124589999999999


Q ss_pred             CCceeEeeccCCCCcccceEEEE
Q psy12044        332 NGTFVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       332 ~GtY~CvA~N~~G~s~~s~sL~V  354 (767)
                      .|.|.|.+.|..+.....+.+.|
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V  132 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTF  132 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEE
Confidence            99999999998877666665555

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=95.67  E-value=0.029  Score=48.68  Aligned_cols=64  Identities=27%  Similarity=0.500  Sum_probs=47.9

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ...++..|..+.|.|...+. ...+.|.+++..+.....       +...       ..-|.|..+...|+|.|.|.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r-------~~~~-------~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFS-------YRVG-------TDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcc-------eEEe-------CCCCEEEECCHhhCEEEEEEEe
Confidence            35678899999999998775 669999999877643211       1111       1236789999999999999986

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=95.67  E-value=0.018  Score=51.94  Aligned_cols=82  Identities=26%  Similarity=0.341  Sum_probs=52.5

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCe---e---ccCCCccc-ccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV---P---IQNESMSA-SESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~---~---l~~~s~~~-~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.+.|.|.+.+.+...+.|.+...   .   +....... ....++...... ......|.|.++..+|+|
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK-SRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc-cCCEEEEEECCCCHHHCE
Confidence            445678899999999999887888999987421   0   00000000 011112221111 234568999999999999


Q ss_pred             ceeEeeccCC
Q psy12044        334 TFVCVAENQA  343 (767)
Q Consensus       334 tY~CvA~N~~  343 (767)
                      .|.|.+.+..
T Consensus        84 ~Y~C~~~~~~   93 (109)
T cd04983          84 VYFCALSESG   93 (109)
T ss_pred             EEEEEEecCC
Confidence            9999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>KOG2052|consensus

Probab=95.64  E-value=0.0046  Score=68.00  Aligned_cols=25  Identities=24%  Similarity=0.085  Sum_probs=22.7

Q ss_pred             CccccCCCCcceEEeeCCceEEEec
Q psy12044        449 YIIADGHNDMMLYATDSGILVATNN  473 (767)
Q Consensus       449 nlIG~GgfG~VYKG~~dG~~VA~~~  473 (767)
                      ..||+|.||.|+||.-.|.-||+|-
T Consensus       217 e~IGkGRyGEVwrG~wrGe~VAVKi  241 (513)
T KOG2052|consen  217 EIIGKGRFGEVWRGRWRGEDVAVKI  241 (513)
T ss_pred             EEecCccccceeeccccCCceEEEE
Confidence            5799999999999998888999866

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=95.54  E-value=0.03  Score=51.55  Aligned_cols=84  Identities=24%  Similarity=0.352  Sum_probs=50.6

Q ss_pred             ccceeecccccccccccccccC----CCcEEEeec----Ce--eccCC--Ccc--cc-cc-cceeecccCcceeeeEEEE
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP----EAKITWLFD----GV--PIQNE--SMS--AS-ES-HAVYSTEEGTEIKKSELLI  324 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P----~p~itW~~~----g~--~l~~~--s~~--~~-~~-~~~~~~~~g~~~~~s~L~I  324 (767)
                      +..+++..|+++.|.|.....+    ...+.|.+.    +.  .+...  ...  .. .. .+..+. .........|.|
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~-~~~~~~~~sL~I   83 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWD-GNIMRRDASILI   83 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEe-cCCcCCceEEEE
Confidence            3457788999999999876433    246999752    11  11000  000  00 00 011111 122234567999


Q ss_pred             eeeccCCCCceeEeeccCCCC
Q psy12044        325 YNSNIDDNGTFVCVAENQAGS  345 (767)
Q Consensus       325 ~nvs~sD~GtY~CvA~N~~G~  345 (767)
                      .+++.+|.|+|.|.+.|..+.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCCC
Confidence            999999999999999987764

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PHA02785 IL-beta-binding protein; Provisional

Probab=95.35  E-value=0.025  Score=61.90  Aligned_cols=78  Identities=23%  Similarity=0.390  Sum_probs=56.9

Q ss_pred             ecccccccccccc-----cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        266 IQEGKNVSLLCKV-----SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       266 v~~G~~vsL~C~a-----~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ..+|+.+.+.|.+     .+.|.+.++|.+++....         + ......     ...|.|.++..+|+|.|.|.+.
T Consensus        38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---------~-~~~~~~-----g~~l~i~~~~~~DsG~Y~C~a~  102 (326)
T PHA02785         38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADND---------R-IIPIDN-----GSNMLILNPTQSDSGIYICITK  102 (326)
T ss_pred             hhcCCCEEEECCCccccccCCCCceEEEEECCCccc---------e-EEEccC-----CceEEEcccCcccCeEEEEEEE
Confidence            4468899999986     688899999999864211         0 111111     2247788899999999999999


Q ss_pred             cCCCCcccceEEEEEeec
Q psy12044        341 NQAGSTSSNYTIRIVLKE  358 (767)
Q Consensus       341 N~~G~s~~s~sL~V~~~~  358 (767)
                      |..|.....+.+.|....
T Consensus       103 N~~g~~~~s~~L~V~~~~  120 (326)
T PHA02785        103 NETYCDMMSLNLTIVSVS  120 (326)
T ss_pred             CCCcceEEEEEEEEEecC
Confidence            999887777777776543

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=95.27  E-value=0.023  Score=51.64  Aligned_cols=80  Identities=18%  Similarity=0.368  Sum_probs=50.3

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--eecc---CC---Ccccc-c--ccceeecccCcceeeeEEEEeeecc
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQ---NE---SMSAS-E--SHAVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l~---~~---s~~~~-~--~~~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      +..+.+.+|+.++|.|...+ +...+.|++..  ....   ..   ..... .  ..++...  ........|.|.++..
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~L~I~~~~~   81 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSAS--RPSLTRSSLTIKSAEP   81 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEE--CcCCCccEEEECCCCh
Confidence            34567889999999999887 77889998832  1111   00   00000 0  0111111  1112356899999999


Q ss_pred             CCCCceeEeeccCC
Q psy12044        330 DDNGTFVCVAENQA  343 (767)
Q Consensus       330 sD~GtY~CvA~N~~  343 (767)
                      +|.|.|.|.+.+..
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          82 EDSAVYLCASSLGG   95 (110)
T ss_pred             hhCEEEEEEeeCCC
Confidence            99999999987643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=95.21  E-value=0.047  Score=49.81  Aligned_cols=86  Identities=15%  Similarity=0.225  Sum_probs=50.8

Q ss_pred             cccccccccccccC----------CCcEEEeec--Ceecc-----CCCc-ccccc-cceeecccCcceeeeEEEEeeecc
Q psy12044        269 GKNVSLLCKVSAIP----------EAKITWLFD--GVPIQ-----NESM-SASES-HAVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       269 G~~vsL~C~a~g~P----------~p~itW~~~--g~~l~-----~~s~-~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      |+.++|.|.....+          ...+.|.+.  +....     .... ..... .++.+...........|.|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            77889999886543          367999984  21110     0110 00111 112222222233457899999999


Q ss_pred             CCCCceeEeeccCCCCcccceEEEE
Q psy12044        330 DDNGTFVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       330 sD~GtY~CvA~N~~G~s~~s~sL~V  354 (767)
                      +|.|+|.|.+........+.+.|.|
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V  106 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEV  106 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEE
Confidence            9999999999876555555555444

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=95.16  E-value=0.052  Score=48.79  Aligned_cols=80  Identities=11%  Similarity=0.203  Sum_probs=50.8

Q ss_pred             eeeccccccccccccc-----------ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        264 LEIQEGKNVSLLCKVS-----------AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~-----------g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      ..+.+|+.+.|.|...           ......+.|++++.........       .+...........|.|..+..+|+
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~-------~~~~~Ri~~~~~~Lwf~Pa~~eDS   82 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEI-------IFDGVRMSKEEDSIWFRPAELQDS   82 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcc-------cccceeEEEeCCEEEEEeCChhhC
Confidence            4567899999999862           1223479999976333221110       000011222345799999999999


Q ss_pred             CceeEeeccCCCCcccce
Q psy12044        333 GTFVCVAENQAGSTSSNY  350 (767)
Q Consensus       333 GtY~CvA~N~~G~s~~s~  350 (767)
                      |.|+|++.|........+
T Consensus        83 G~Y~C~~rN~t~C~~~~i  100 (104)
T cd05896          83 GLYTCVLRNSTYCMKVSM  100 (104)
T ss_pred             eEEEEEECCCCcceEEEE
Confidence            999999998775544433

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=95.15  E-value=0.043  Score=48.12  Aligned_cols=64  Identities=16%  Similarity=0.276  Sum_probs=46.2

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      .+..|.+++|.|... .+...+.|.+++....... .            ........+.|.+++.+|.|.|.|...+.
T Consensus        12 vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~------------~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          12 VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-P------------PEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-c------------CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            567899999999875 6667788888775432110 0            01123457899999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=95.11  E-value=0.078  Score=48.68  Aligned_cols=84  Identities=23%  Similarity=0.338  Sum_probs=50.3

Q ss_pred             cceeecccccccccccccccC----CCcEEEeecCe------ecc---CCCcc---cccc-cceeecccCcceeeeEEEE
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIP----EAKITWLFDGV------PIQ---NESMS---ASES-HAVYSTEEGTEIKKSELLI  324 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P----~p~itW~~~g~------~l~---~~s~~---~~~~-~~~~~~~~g~~~~~s~L~I  324 (767)
                      ..+.+..|+.++|.|......    ...+.|.+...      .+.   .....   .... .++.+. .........|.|
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~-~~~~~~~~sL~I   84 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWV-GNPSRKDASIVI   84 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEe-cCCcCCeeEEEE
Confidence            346778999999999875432    25699976221      111   00000   0011 111111 112234578999


Q ss_pred             eeeccCCCCceeEeeccCCCCc
Q psy12044        325 YNSNIDDNGTFVCVAENQAGST  346 (767)
Q Consensus       325 ~nvs~sD~GtY~CvA~N~~G~s  346 (767)
                      .+++.+|.|.|.|.+.|.....
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~~  106 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDIV  106 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCCC
Confidence            9999999999999999876543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.03  E-value=0.055  Score=47.68  Aligned_cols=36  Identities=19%  Similarity=0.463  Sum_probs=27.4

Q ss_pred             eeeEEEEeeeccCCCCceeEeecc-CCCCcccceEEE
Q psy12044        318 KKSELLIYNSNIDDNGTFVCVAEN-QAGSTSSNYTIR  353 (767)
Q Consensus       318 ~~s~L~I~nvs~sD~GtY~CvA~N-~~G~s~~s~sL~  353 (767)
                      ....|.|.++..+|.|.|.|.+.. +.|...+...+.
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~   96 (98)
T cd05718          60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLT   96 (98)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEE
Confidence            457899999999999999999864 556555544443

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=94.99  E-value=0.027  Score=48.99  Aligned_cols=76  Identities=21%  Similarity=0.246  Sum_probs=45.1

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCccc---ccccce--eecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA---SESHAV--YSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~---~~~~~~--~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      |+.++|.|.........+.|.+.........+..   ......  .+...-.......|.|.++..+|.|.|.|......
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            6788999988776677899998542221111000   000000  00000011123689999999999999999987765


Q ss_pred             C
Q psy12044        344 G  344 (767)
Q Consensus       344 G  344 (767)
                      |
T Consensus        81 ~   81 (92)
T cd05741          81 G   81 (92)
T ss_pred             C
Confidence            3

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=94.94  E-value=0.082  Score=47.25  Aligned_cols=35  Identities=20%  Similarity=0.424  Sum_probs=26.7

Q ss_pred             eeeEEEEeeeccCCCCceeEeecc-CCCCcccceEE
Q psy12044        318 KKSELLIYNSNIDDNGTFVCVAEN-QAGSTSSNYTI  352 (767)
Q Consensus       318 ~~s~L~I~nvs~sD~GtY~CvA~N-~~G~s~~s~sL  352 (767)
                      ....|.|.+++.+|.|+|.|...+ +.|...+.+.|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L   97 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVL   97 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEE
Confidence            456799999999999999999987 55554333433

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>KOG0593|consensus

Probab=94.87  E-value=0.014  Score=61.51  Aligned_cols=56  Identities=18%  Similarity=0.283  Sum_probs=41.3

Q ss_pred             CccccCCCCcceEEe--eCCceEEEec-cccC---CCc--ch---hhhh-hhCCCCcccchhhccccc
Q psy12044        449 YIIADGHNDMMLYAT--DSGILVATNN-MNTY---PSY--SI---SYQI-EQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~dG~~VA~~~-~~~~---~~~--~~---~~~~-e~npdlin~~e~~~~~~~  504 (767)
                      -.+|||+||+|||..  ..|++||++. .+.=   ..+  ++   +=+. =++|+|+|=.|.-.++++
T Consensus         8 gkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrk   75 (396)
T KOG0593|consen    8 GKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRK   75 (396)
T ss_pred             hccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcce
Confidence            379999999999999  9999999988 1111   111  11   1111 359999999999999888

>cd00098 IgC Immunoglobulin Constant domain

Probab=94.65  E-value=0.078  Score=46.38  Aligned_cols=74  Identities=23%  Similarity=0.462  Sum_probs=51.1

Q ss_pred             cccccccccccccc-C-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCC
Q psy12044        268 EGKNVSLLCKVSAI-P-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS  345 (767)
Q Consensus       268 ~G~~vsL~C~a~g~-P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~  345 (767)
                      .|..+.|.|.+.+. | ...++|..++..+.....    ........++.....+.|.+......+.+.|+|.+.+....
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~----~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT----TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee----ccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            57889999999998 5 368999999887754332    01122233444555666777666666899999999876543

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=94.64  E-value=0.038  Score=49.14  Aligned_cols=79  Identities=20%  Similarity=0.228  Sum_probs=47.3

Q ss_pred             ccccccccccccc-cCCCcEEEeecCeeccCCCcc--cccccce--eec-ccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        268 EGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMS--ASESHAV--YST-EEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       268 ~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~--~~~~~~~--~~~-~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      .|++++|.|.... .....+.|.+....+......  .......  .+. ..........|.|.++..+|.|.|.|....
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            5889999998765 556789999864222111100  0000000  000 000112247899999999999999999987


Q ss_pred             CCCCc
Q psy12044        342 QAGST  346 (767)
Q Consensus       342 ~~G~s  346 (767)
                      ..|..
T Consensus        83 ~~~~~   87 (97)
T cd05775          83 KNGVT   87 (97)
T ss_pred             CCCCe
Confidence            76543

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>KOG2120|consensus

Probab=94.35  E-value=0.0065  Score=63.71  Aligned_cols=152  Identities=20%  Similarity=0.149  Sum_probs=105.5

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCC-CCCccCc-ccccCCCCCCEEEccCCCCCCCCCCC-CCC-CCC
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRC-RISVIDS-KAFRGLTNLVDLDFSHNVLQTVPSDT-FPD-YPS  124 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N-~L~~i~p-~~f~~L~~L~~L~Ls~N~Lt~l~p~~-f~~-l~~  124 (767)
                      ..|+.|.|.+++|.+-....++.  -.+|+.|+|+.+ .|+.... -.|.+++.|.+|+|+++.+....-.. ... -++
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAk--N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAK--NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhc--cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            57899999999999877777774  579999999985 4444221 23678999999999999876432111 111 257


Q ss_pred             CcEEECCCCcCcc-c--ccCCcCCCCCccEEeccCC-CccccchhhhcCCCCCCeeeccCCccccccCC----CCCCCCc
Q psy12044        125 LMKLTLSGNPIKQ-I--KTGAFQPLSYLVTLELSKC-GIEVIEDAAFVGLDSLEWLKLDNNKITTISGS----NILPTGL  196 (767)
Q Consensus       125 L~~L~Ls~N~l~~-l--~~~~~~~l~~L~~L~Ls~N-~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~----~~~~~~L  196 (767)
                      |..|+|++..-.- .  ....-..+++|..|||++| .|+.-....|..++.|++|.|+.+-.  |+++    +...++|
T Consensus       288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSL  365 (419)
T ss_pred             hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcce
Confidence            8899998864211 1  0111245789999999987 56655555677899999999988743  2322    2345788


Q ss_pred             ccccCCCC
Q psy12044        197 HGIDLHHN  204 (767)
Q Consensus       197 ~~L~Ls~N  204 (767)
                      .+|++.+.
T Consensus       366 ~yLdv~g~  373 (419)
T KOG2120|consen  366 VYLDVFGC  373 (419)
T ss_pred             EEEEeccc
Confidence            89988764

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=94.33  E-value=0.12  Score=46.27  Aligned_cols=37  Identities=14%  Similarity=0.482  Sum_probs=29.4

Q ss_pred             eeeEEEEeeeccCCCCceeEeecc-CCCCcccceEEEE
Q psy12044        318 KKSELLIYNSNIDDNGTFVCVAEN-QAGSTSSNYTIRI  354 (767)
Q Consensus       318 ~~s~L~I~nvs~sD~GtY~CvA~N-~~G~s~~s~sL~V  354 (767)
                      ...+|.|.++..+|.|+|.|...+ +.|...+.+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            567899999999999999999998 5676555555543

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=94.26  E-value=0.11  Score=47.39  Aligned_cols=86  Identities=14%  Similarity=0.203  Sum_probs=49.9

Q ss_pred             cccccccccccccC-------CCcEEEeecC-----eec----c-CCC--cccccccceeecccCcceeeeEEEEeeecc
Q psy12044        269 GKNVSLLCKVSAIP-------EAKITWLFDG-----VPI----Q-NES--MSASESHAVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       269 G~~vsL~C~a~g~P-------~p~itW~~~g-----~~l----~-~~s--~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      |..+.|.|...-.|       .+.|.|.+..     ...    . ...  .......+..+..........+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            56788888854322       4688998731     110    0 000  111112223333333444567999999999


Q ss_pred             CCCCceeEeeccCCCCcccceEEEE
Q psy12044        330 DDNGTFVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       330 sD~GtY~CvA~N~~G~s~~s~sL~V  354 (767)
                      +|+|.|.|............+.|.|
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V  106 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEV  106 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEE
Confidence            9999999999875544444444433

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=94.10  E-value=0.051  Score=48.40  Aligned_cols=79  Identities=19%  Similarity=0.286  Sum_probs=49.2

Q ss_pred             eeccccccccccccccc-CCCcEEEeecCe-----eccC-CCc----ccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        265 EIQEGKNVSLLCKVSAI-PEAKITWLFDGV-----PIQN-ESM----SASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~-P~p~itW~~~g~-----~l~~-~s~----~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      .+..|+.+.|.|..... +...+.|.+...     .+.. ...    ......++...... ......|.|.++..+|.|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDS-SKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEec-cCCEEEEEECCCCHHHCE
Confidence            45689999999998876 677899988322     0100 000    00011112111111 124568999999999999


Q ss_pred             ceeEeeccCCC
Q psy12044        334 TFVCVAENQAG  344 (767)
Q Consensus       334 tY~CvA~N~~G  344 (767)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=94.08  E-value=0.068  Score=48.40  Aligned_cols=80  Identities=21%  Similarity=0.192  Sum_probs=47.2

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccC-----CCcccccccc-eeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQN-----ESMSASESHA-VYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~-----~s~~~~~~~~-~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      ..+.+|+.+.|.|.........++|++.......     .......... -.+........+++|.|.+++.+|.|.|.|
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~   87 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL   87 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence            3567899999998765555568999984321111     1000000000 000001112234689999999999999999


Q ss_pred             eeccCC
Q psy12044        338 VAENQA  343 (767)
Q Consensus       338 vA~N~~  343 (767)
                      .+.+..
T Consensus        88 ~v~~~~   93 (105)
T cd05774          88 QTITTN   93 (105)
T ss_pred             EEEeCC
Confidence            998765

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=93.66  E-value=0.089  Score=47.34  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=48.3

Q ss_pred             ccceeecccccccccccccccC-CCcEEEeecC--e---eccCC-Cccccc-ccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP-EAKITWLFDG--V---PIQNE-SMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g--~---~l~~~-s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      +..+.+.+|+.++|.|.+.+.. ...+.|++..  .   .+... ...... ...+...   .......|.|.++..+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS---GSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe---ccCCEEEEEECCCChHHC
Confidence            4456788999999999987665 6789998732  1   11110 000000 0111111   112345799999999999


Q ss_pred             CceeEeecc
Q psy12044        333 GTFVCVAEN  341 (767)
Q Consensus       333 GtY~CvA~N  341 (767)
                      |.|.|.+.+
T Consensus        84 g~Y~Ca~~~   92 (106)
T cd04980          84 AVYYCQQYG   92 (106)
T ss_pred             EEEEEEEeC
Confidence            999999864

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=93.62  E-value=0.24  Score=45.73  Aligned_cols=41  Identities=15%  Similarity=0.284  Sum_probs=31.4

Q ss_pred             CcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceEEEE
Q psy12044        314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       314 g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V  354 (767)
                      .......+|.|.++..+|+|.|.|............+.+.|
T Consensus        73 ~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V  113 (117)
T cd05901          73 PEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV  113 (117)
T ss_pred             CCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence            33445688999999999999999999877666655555544

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>KOG4221|consensus

Probab=93.55  E-value=0.043  Score=66.92  Aligned_cols=90  Identities=27%  Similarity=0.416  Sum_probs=70.2

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+...+..+...++..+.+.|.+.+.|.|.+.|+++|..+......       ..      .....|.|.-+-..|.|.
T Consensus       329 P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~-------ki------~~~~~lrIlgi~~sdeg~  395 (1381)
T KOG4221|consen  329 PGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYF-------KI------VGGGNLRILGIVKSDEGF  395 (1381)
T ss_pred             CCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccce-------Ee------cCCCCcEEEEEecccchh
Confidence            55666666777888999999999999999999999988665442221       11      111238888899999999


Q ss_pred             eeEeeccCCCCcccceEEEEEee
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      |.|+++|..|.+.....+.+...
T Consensus       396 yQcvaen~~G~a~a~a~l~vv~~  418 (1381)
T KOG4221|consen  396 YQCVAENDAGSAQAAAQLEVVPQ  418 (1381)
T ss_pred             hhhhhccCcccccchhhheeccC
Confidence            99999999999999888866654

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=93.44  E-value=0.12  Score=45.79  Aligned_cols=74  Identities=15%  Similarity=0.270  Sum_probs=45.2

Q ss_pred             eeccccccccccccccc--CCCcEEEeecC--eec---cCCC-ccccc-ccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        265 EIQEGKNVSLLCKVSAI--PEAKITWLFDG--VPI---QNES-MSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~--P~p~itW~~~g--~~l---~~~s-~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      .+..|+.++|.|.....  ....+.|++..  ...   .... ..... ...+....   ......|.|.++..+|.|+|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~---~~~~~~L~I~~~~~~Dsg~Y   78 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK---SGNTASLTISGAQTEDEADY   78 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc---cCCEEEEEECCCChhhCEEE
Confidence            45689999999988765  56679998722  111   1000 00000 01111111   11456799999999999999


Q ss_pred             eEeecc
Q psy12044        336 VCVAEN  341 (767)
Q Consensus       336 ~CvA~N  341 (767)
                      .|.+.+
T Consensus        79 ~C~~~~   84 (98)
T cd04984          79 YCQVWD   84 (98)
T ss_pred             EEEEcc
Confidence            999864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=93.43  E-value=0.21  Score=44.18  Aligned_cols=83  Identities=23%  Similarity=0.390  Sum_probs=45.6

Q ss_pred             cccccccccccccCC-CcEEEeecCe----ecc------CCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        269 GKNVSLLCKVSAIPE-AKITWLFDGV----PIQ------NESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       269 G~~vsL~C~a~g~P~-p~itW~~~g~----~l~------~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      |+.++|.|....... ..+.|.+...    .+.      .............+.  ........|.|.++..+|.|.|.|
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~sL~I~nv~~~D~G~Y~C   78 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT--SLGLNSTSITIWNVTLEDEGCYKC   78 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc--CCCCCccEEEEeCCceeeeEEEEE
Confidence            567889997554332 3689987321    110      001110111111111  122345789999999999999999


Q ss_pred             eec-cCCCCcccceEEE
Q psy12044        338 VAE-NQAGSTSSNYTIR  353 (767)
Q Consensus       338 vA~-N~~G~s~~s~sL~  353 (767)
                      ... .+.|.....+.|+
T Consensus        79 ~~~~~p~g~~~~~~~L~   95 (97)
T cd05846          79 IFNTFPDGSKSGTMCLT   95 (97)
T ss_pred             EEEeCCCCCeeeEEEEE
Confidence            875 4445544444443

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=93.24  E-value=0.12  Score=47.25  Aligned_cols=81  Identities=22%  Similarity=0.381  Sum_probs=49.7

Q ss_pred             Cccceeecccccccccccccc--cCCCcEEEeec--Cee---cc---CCCcc---cc-cccceeecccCcceeeeEEEEe
Q psy12044        260 STFYLEIQEGKNVSLLCKVSA--IPEAKITWLFD--GVP---IQ---NESMS---AS-ESHAVYSTEEGTEIKKSELLIY  325 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g--~P~p~itW~~~--g~~---l~---~~s~~---~~-~~~~~~~~~~g~~~~~s~L~I~  325 (767)
                      .+..+.+..|+.++|.|.+.+  .+.+.+.|++.  +..   +.   .....   .. ....+..... .......|.|.
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~   82 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKD-VGKSTSTLTIQ   82 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEE-CCCCEEEEEEE
Confidence            344567889999999999877  67788999883  211   11   00000   00 0011111111 11135689999


Q ss_pred             eeccCCCCceeEeecc
Q psy12044        326 NSNIDDNGTFVCVAEN  341 (767)
Q Consensus       326 nvs~sD~GtY~CvA~N  341 (767)
                      ++..+|.|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=93.11  E-value=0.39  Score=41.09  Aligned_cols=69  Identities=22%  Similarity=0.297  Sum_probs=43.4

Q ss_pred             cccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCc
Q psy12044        272 VSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST  346 (767)
Q Consensus       272 vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s  346 (767)
                      +.|.|.+.+. |.+.++|+.++..+....      ........+.....+.|.+......+.+.|+|.+.+.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~------~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK------LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce------eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            4688988765 888999999987775322      01111122333345556664444455678999999876554

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=93.09  E-value=0.27  Score=43.69  Aligned_cols=82  Identities=21%  Similarity=0.356  Sum_probs=47.8

Q ss_pred             ccccccccccc-CCCcEEEeecC----eecc------CCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        271 NVSLLCKVSAI-PEAKITWLFDG----VPIQ------NESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       271 ~vsL~C~a~g~-P~p~itW~~~g----~~l~------~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      +++|.|..... ....+.|.+..    ..+.      ...+......+..+..  ......+|.|.+++.+|.|.|.|..
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~--~~~~d~sl~i~nv~~~D~G~Y~C~v   79 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN--YSLLDATIMLENVGFSDIGVYICKA   79 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC--CCCCccEEEEeCCCccccEEEEEEE
Confidence            56778876532 33478998732    1111      0011111112233321  2234678999999999999999986


Q ss_pred             -ccCCCCcccceEEEE
Q psy12044        340 -ENQAGSTSSNYTIRI  354 (767)
Q Consensus       340 -~N~~G~s~~s~sL~V  354 (767)
                       ..+.|+..+...+.|
T Consensus        80 ~tfP~G~~~~~~~l~~   95 (96)
T cd05887          80 VTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EeCCCCCeeEEEEEEE
Confidence             556777666665544

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>KOG0663|consensus

Probab=92.74  E-value=0.042  Score=58.72  Aligned_cols=60  Identities=18%  Similarity=0.295  Sum_probs=44.7

Q ss_pred             cCCCCCCCCccccCCCCcceEEe--eCCceEEEec------cccCCCcchh---hhh-hhCCCCcccchhhc
Q psy12044        441 CMDKVNGGYIIADGHNDMMLYAT--DSGILVATNN------MNTYPSYSIS---YQI-EQNPDLVNDAESVD  500 (767)
Q Consensus       441 ~~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~------~~~~~~~~~~---~~~-e~npdlin~~e~~~  500 (767)
                      +.++|.--|.|++|.||.||||.  .++++||-++      .+.++-.+++   -+. -++|.++|=-|+|-
T Consensus        74 sv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVv  145 (419)
T KOG0663|consen   74 SVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVV  145 (419)
T ss_pred             cHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEe
Confidence            34567777899999999999999  8999999999      3455544432   222 56899888767765

>cd00096 Ig Immunoglobulin domain

Probab=92.69  E-value=0.36  Score=37.60  Aligned_cols=65  Identities=37%  Similarity=0.662  Sum_probs=44.3

Q ss_pred             cccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        273 SLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       273 sL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      .+.|.+.+.+...+.|...+.........      ..............|.+.++...|.|.|.|.+.+..
T Consensus         2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           2 TLTCLASGPPPPTITWLKNGKPLPSSVLT------RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEEecCCCCCcEEEEECCEECCCcccE------EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            57788888778899999876544332211      111122233455678999999999999999987754

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=92.62  E-value=0.32  Score=48.18  Aligned_cols=91  Identities=18%  Similarity=0.348  Sum_probs=55.1

Q ss_pred             ceeeccccccccccccc-ccCCCcEEEeecCeeccCCCccc----cc-ccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        263 YLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSA----SE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~----~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      ..++.+|++++|.|... +...+.+.|.+....+.......    +. ..++.+  .......+.|.|.++..+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~--mS~s~~~StItIknVt~sDeGcY~  101 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY--LSKSFNESTILIKNVSLKDNGCYT  101 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE--eccCCCcceEEEEeCChhhCeEEE
Confidence            46788999999999985 55678899998543222111100    00 011111  111124578999999999999999


Q ss_pred             EeeccC-CC-CcccceEEEEE
Q psy12044        337 CVAENQ-AG-STSSNYTIRIV  355 (767)
Q Consensus       337 CvA~N~-~G-~s~~s~sL~V~  355 (767)
                      |..... .| .......+.|.
T Consensus       102 C~F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987        102 CIFNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EEEEecCCCCCceeEEEEEEE
Confidence            987543 34 34444444444

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=92.47  E-value=0.068  Score=55.91  Aligned_cols=36  Identities=11%  Similarity=0.183  Sum_probs=31.1

Q ss_pred             HHhcccCCCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        436 ATSATCMDKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       436 l~~AT~~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +.-+|  ++|+...+||+|+||.||+|.  .++..||++.
T Consensus         3 ~~~~~--~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~   40 (268)
T cd06624           3 YEYEY--DENGERVVLGKGTYGIVYAARDLSTQVRIAIKE   40 (268)
T ss_pred             ccccc--ccCCceEEEecCCceEEEEeEecCCCcEEEEEE
Confidence            45567  899999999999999999999  6788899875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=92.46  E-value=0.34  Score=42.75  Aligned_cols=78  Identities=15%  Similarity=0.167  Sum_probs=46.9

Q ss_pred             eeecccccccccccccc-cCCCcEEEeecCe-----eccCCCccc-ccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        264 LEIQEGKNVSLLCKVSA-IPEAKITWLFDGV-----PIQNESMSA-SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~-----~l~~~s~~~-~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +.+..|+.++|.|.... .....+.|.+...     .+....... .....+... .........|.|.++..+|+|.|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~-~~~~~~~~~L~I~~v~~~DsG~Y~   80 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLT-DDPDNGVFTVTLNQLRKEDAGWYW   80 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEE-ecCCCCEEEEEEcCCCHHHCEEEE
Confidence            35678999999998765 3566788987321     111000000 011112211 111234568999999999999999


Q ss_pred             EeeccC
Q psy12044        337 CVAENQ  342 (767)
Q Consensus       337 CvA~N~  342 (767)
                      |.+...
T Consensus        81 C~~~~~   86 (98)
T cd05716          81 CGVGDD   86 (98)
T ss_pred             EEcccC
Confidence            988754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=92.09  E-value=0.18  Score=46.14  Aligned_cols=81  Identities=16%  Similarity=0.258  Sum_probs=48.8

Q ss_pred             ccceeeccccccccccccccc-CCCcEEEeec--Cee---c-cCCCccccc-ccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI-PEAKITWLFD--GVP---I-QNESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~--g~~---l-~~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      +..+.+..|+.+.|.|..... ....+.|.+.  +..   + ......... ..++.... ........|.|.++..+|.
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~~sL~I~~~~~~Ds   84 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF-QKAQKSISLTISALQLEDS   84 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE-eccCCEEEEEECCCCHHHC
Confidence            445678899999999987654 4567899873  211   1 111111111 11111110 1122356799999999999


Q ss_pred             CceeEeeccC
Q psy12044        333 GTFVCVAENQ  342 (767)
Q Consensus       333 GtY~CvA~N~  342 (767)
                      |.|.|.+...
T Consensus        85 g~Y~C~~~~~   94 (116)
T cd07706          85 AKYFCALSTL   94 (116)
T ss_pred             EEEEEEEECC
Confidence            9999998753

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.78  E-value=0.096  Score=46.80  Aligned_cols=81  Identities=22%  Similarity=0.305  Sum_probs=49.8

Q ss_pred             ccceeeccccccccccccc-ccCCCcEEEeecCe-----ecc-C-CC----ccccc-ccceeecccCcceeeeEEEEeee
Q psy12044        261 TFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGV-----PIQ-N-ES----MSASE-SHAVYSTEEGTEIKKSELLIYNS  327 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~-g~P~p~itW~~~g~-----~l~-~-~s----~~~~~-~~~~~~~~~g~~~~~s~L~I~nv  327 (767)
                      +..+.+..|+.+.|.|... ......+.|.+...     .+. . ..    ..... .....+.. ........|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSG-NGSQNNFSLTIKNL   86 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEE-ETTTTEEEEEESSE
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeee-cccCCeEEEEECCC
Confidence            3456788999999999998 55667899998321     111 0 00    00000 00011111 11133567999999


Q ss_pred             ccCCCCceeEeeccC
Q psy12044        328 NIDDNGTFVCVAENQ  342 (767)
Q Consensus       328 s~sD~GtY~CvA~N~  342 (767)
                      ..+|.|.|.|.....
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SGGGEEEEEEEEEES
T ss_pred             CcCcCEEEEEEEEEC
Confidence            999999999998765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=91.73  E-value=0.66  Score=39.93  Aligned_cols=69  Identities=19%  Similarity=0.282  Sum_probs=43.9

Q ss_pred             cccccccccc-CCCcEEEeecCeeccCCCcccccccceeeccc-CcceeeeEEEEeeeccCCCCceeEeeccCCCCc
Q psy12044        272 VSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEE-GTEIKKSELLIYNSNIDDNGTFVCVAENQAGST  346 (767)
Q Consensus       272 vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~-g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s  346 (767)
                      +.|.|.+.+. |.+.|+|.+++..+.....      ....... +.....+.|.+......+...|.|.+.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~------~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT------SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce------eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            4688998875 8889999999977654321      0111112 233344566665555556678999999876443

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=91.68  E-value=0.096  Score=60.74  Aligned_cols=21  Identities=10%  Similarity=0.071  Sum_probs=19.9

Q ss_pred             CCCCCCCccccCCCCcceEEe
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT  463 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~  463 (767)
                      ++|...++||+|+||.||||.
T Consensus       145 d~F~i~~~LG~GgFG~VYkG~  165 (507)
T PLN03224        145 DDFQLRDKLGGGNFGITFEGL  165 (507)
T ss_pred             cCceEeeEeecCCCeEEEEEE
Confidence            899999999999999999995

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=91.64  E-value=0.093  Score=49.90  Aligned_cols=30  Identities=17%  Similarity=0.195  Sum_probs=16.6

Q ss_pred             eeEEEeeehhhHHHHHHHHHHHhh-hhhhhh
Q psy12044        372 VLIVSGIISVCSLVLIFLLVLCFL-CFRRKK  401 (767)
Q Consensus       372 ~~iIigivv~llvllllvvivi~~-~~rRrr  401 (767)
                      ..+|+|+++|+.+.+++++++++| +|+|+|
T Consensus        48 knIVIGvVVGVGg~ill~il~lvf~~c~r~k   78 (154)
T PF04478_consen   48 KNIVIGVVVGVGGPILLGILALVFIFCIRRK   78 (154)
T ss_pred             ccEEEEEEecccHHHHHHHHHhheeEEEecc
Confidence            357777777765555544444444 444433

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG0193|consensus

Probab=91.03  E-value=0.13  Score=59.00  Aligned_cols=57  Identities=14%  Similarity=0.111  Sum_probs=37.2

Q ss_pred             ccHHHHHhcccCCCCCCCCccccCCCCcceEEeeCCceEEEec--cccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        431 YTSVNATSATCMDKVNGGYIIADGHNDMMLYATDSGILVATNN--MNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       431 fs~~El~~AT~~nnFs~~nlIG~GgfG~VYKG~~dG~~VA~~~--~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      +.++|++.+.         .||+|.||+||||.--|. ||+|-  ++.-++..+.-       |=|||-...|-|-
T Consensus       389 Ip~~ev~l~~---------rIGsGsFGtV~Rg~whGd-VAVK~Lnv~~pt~~qlqa-------FKnEVa~lkkTRH  447 (678)
T KOG0193|consen  389 IPPEEVLLGE---------RIGSGSFGTVYRGRWHGD-VAVKLLNVDDPTPEQLQA-------FKNEVAVLKKTRH  447 (678)
T ss_pred             cCHHHhhccc---------eeccccccceeecccccc-eEEEEEecCCCCHHHHHH-------HHHHHHHHhhcch
Confidence            4567777666         799999999999992222 88887  33333443333       4478866655443

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=90.96  E-value=0.075  Score=49.11  Aligned_cols=31  Identities=32%  Similarity=0.410  Sum_probs=16.8

Q ss_pred             EEEeeehhhHHHHHHHHHHHhhhhhhhhccc
Q psy12044        374 IVSGIISVCSLVLIFLLVLCFLCFRRKKKKL  404 (767)
Q Consensus       374 iIigivv~llvllllvvivi~~~~rRrrr~~  404 (767)
                      .|++|++++++.+++++++++|++||+||+.
T Consensus        65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~   95 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILLISYCIRRLRKKS   95 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4556665555555555566666666665554

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=90.56  E-value=0.17  Score=50.93  Aligned_cols=25  Identities=24%  Similarity=0.178  Sum_probs=23.4

Q ss_pred             ccccCCCCcceEEe-eCCceEEEecc
Q psy12044        450 IIADGHNDMMLYAT-DSGILVATNNM  474 (767)
Q Consensus       450 lIG~GgfG~VYKG~-~dG~~VA~~~~  474 (767)
                      .||+|+||.||+|. .+|+.||+|..
T Consensus         4 ~ig~G~~~~Vy~a~~~~g~~vAvKv~   29 (190)
T cd05147           4 CISTGKEANVYHATTANGEERAIKIY   29 (190)
T ss_pred             ccccccceEEEEEECCCCCEEEEEEE
Confidence            79999999999999 99999999883

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0595|consensus

Probab=90.14  E-value=0.17  Score=55.52  Aligned_cols=30  Identities=20%  Similarity=0.128  Sum_probs=26.1

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.....||+|+||+||||.  .+|..||+|.
T Consensus        11 ~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~   42 (429)
T KOG0595|consen   11 DYELSREIGSGSFAVVYKGRHKKSGTEVAIKC   42 (429)
T ss_pred             cceehhhccCcceEEEEEeEeccCCceEEeee
Confidence            55555679999999999999  8999999977

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=90.12  E-value=0.63  Score=41.03  Aligned_cols=66  Identities=15%  Similarity=0.197  Sum_probs=44.3

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ..+..|++++|.|.... ....+.|.+++........          ...........+.|..++..|.|.|.|...
T Consensus        10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~----------~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHL----------YEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceec----------ccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            45678999999997765 5567888887643221100          000112234578999999999999999864

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>KOG4222|consensus

Probab=90.07  E-value=0.36  Score=58.99  Aligned_cols=90  Identities=22%  Similarity=0.327  Sum_probs=67.5

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+...+....+..|..+.+.|.+.+.|.|.+.|.+.+..+.-.+.        +.     ...+-+|.|..+++.|.|+
T Consensus       226 P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry--------~i-----~~d~qtl~i~r~tp~deg~  292 (1281)
T KOG4222|consen  226 PWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRY--------SI-----LDDTQTLRIDRVTPTDEGT  292 (1281)
T ss_pred             CccccccccceeecccccccccccCCCCCCceeeeccCCCCCccce--------ee-----eeccccccccccCCCcccc
Confidence            3344445566788899999999999999999999985443322111        11     1122468889999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEee
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      |.|.+.|..|...+...+.|...
T Consensus       293 y~C~a~n~vG~l~asa~ltV~ap  315 (1281)
T KOG4222|consen  293 YVCPAENLVGGLEASATLTVQAP  315 (1281)
T ss_pred             eeeeccccccccccccceEEecC
Confidence            99999999999999988888764

>KOG0597|consensus

Probab=89.99  E-value=0.13  Score=58.51  Aligned_cols=30  Identities=13%  Similarity=0.000  Sum_probs=24.8

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|---.+||+|.||.||||.  .++++||.+-
T Consensus         3 ~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~   34 (808)
T KOG0597|consen    3 QYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKF   34 (808)
T ss_pred             chhHHHHhcCCccceeeecccccceeEEEEEE
Confidence            34434489999999999999  8899999866

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=89.95  E-value=0.83  Score=39.74  Aligned_cols=61  Identities=21%  Similarity=0.315  Sum_probs=43.1

Q ss_pred             eecccccccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        265 EIQEGKNVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      .+..|+.++|.|.....+.|  .+.|...+...-..                ......+|.+..+...|.|+|+|.+..
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~----------------~~~~~ktL~~~qv~~qdSG~WtC~V~~   72 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI----------------LNQDKKTLNLVQLGPNDSGTWDCIVSV   72 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee----------------ccCCccEEEeceeCcccCCEEEEEEEE
Confidence            46789999999998665555  99998754321100                011234688899999999999999863

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=89.94  E-value=0.36  Score=35.32  Aligned_cols=27  Identities=26%  Similarity=0.562  Sum_probs=12.1

Q ss_pred             eeEEEeeehhhHHHHHHHHHHHhhhhh
Q psy12044        372 VLIVSGIISVCSLVLIFLLVLCFLCFR  398 (767)
Q Consensus       372 ~~iIigivv~llvllllvvivi~~~~r  398 (767)
                      ..+.+|+++.++++++++++++++++|
T Consensus        11 vaIa~~VvVPV~vI~~vl~~~l~~~~r   37 (40)
T PF08693_consen   11 VAIAVGVVVPVGVIIIVLGAFLFFWYR   37 (40)
T ss_pred             EEEEEEEEechHHHHHHHHHHhheEEe
Confidence            344555555444444444443333333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=89.64  E-value=0.17  Score=59.65  Aligned_cols=33  Identities=12%  Similarity=0.092  Sum_probs=28.7

Q ss_pred             CCCCCCCccccCCCCcceEEe--eC----CceEEEeccc
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DS----GILVATNNMN  475 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~d----G~~VA~~~~~  475 (767)
                      ++|.-.+.||+|+||.||||+  .+    |..||++...
T Consensus       132 ~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~  170 (566)
T PLN03225        132 DDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKAT  170 (566)
T ss_pred             CCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEec
Confidence            788888999999999999999  56    7899988733

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=89.57  E-value=0.9  Score=39.12  Aligned_cols=69  Identities=22%  Similarity=0.318  Sum_probs=42.6

Q ss_pred             ccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCC
Q psy12044        272 VSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS  345 (767)
Q Consensus       272 vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~  345 (767)
                      +.|.|.+.+ .|...++|.+++..+.......     .....++.....+.|.+..-...+...|+|.+.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~-----~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLK-----EEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeE-----eeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            468898877 5678999999998864432110     11112233445566666544445566799999876543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>KOG0659|consensus

Probab=89.39  E-value=0.21  Score=51.99  Aligned_cols=24  Identities=21%  Similarity=0.356  Sum_probs=23.0

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .||||.||.||||.  ..|+.||++.
T Consensus         9 ~lGEG~~gvVyka~d~~t~~~VAIKK   34 (318)
T KOG0659|consen    9 KLGEGTYGVVYKARDTETGKRVAIKK   34 (318)
T ss_pred             hhcCcceEEEEEEEecCCCcEEEEEE
Confidence            79999999999999  9999999988

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=89.37  E-value=0.37  Score=48.41  Aligned_cols=28  Identities=18%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             ceeeeEEEeeehhhHHHHHHHHHHHhhh
Q psy12044        369 LEYVLIVSGIISVCSLVLIFLLVLCFLC  396 (767)
Q Consensus       369 ~~~~~iIigivv~llvllllvvivi~~~  396 (767)
                      ..+..|++|||+|++.++|+++++++++
T Consensus        34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR   61 (221)
T PF08374_consen   34 KDYVKIMIAIVAGIMTVILVIFIVVLVR   61 (221)
T ss_pred             ccceeeeeeeecchhhhHHHHHHHHHHH
Confidence            4567788888888777777776666665

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=89.34  E-value=0.17  Score=53.77  Aligned_cols=31  Identities=26%  Similarity=0.266  Sum_probs=27.1

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++|...++||+|+||.||+|.  .+|..||++.
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~   33 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKK   33 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEe
Confidence            356777899999999999999  7899999886

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=89.17  E-value=0.95  Score=41.67  Aligned_cols=80  Identities=21%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             ccceeecccccccccccccccC------CCcEEEeecC--e---e-cc--CCCc-ccccc-cceeecccCcceeeeEEEE
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP------EAKITWLFDG--V---P-IQ--NESM-SASES-HAVYSTEEGTEIKKSELLI  324 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P------~p~itW~~~g--~---~-l~--~~s~-~~~~~-~~~~~~~~g~~~~~s~L~I  324 (767)
                      +..+.+.+|+.++|.|......      ...+.|.+..  .   . +.  .... ..... .++... .........|.|
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~-~~~~~~~~sL~I   84 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLL-GDLGKKNCSLLI   84 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEe-cCCCCCEEEEEE
Confidence            3446788999999999764322      3458898732  1   1 11  0000 00011 111111 112344578999


Q ss_pred             eeeccCCCCceeEeecc
Q psy12044        325 YNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       325 ~nvs~sD~GtY~CvA~N  341 (767)
                      .++..+|+|+|.|....
T Consensus        85 ~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          85 SDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             ccCChhhCeEEEEEEEc
Confidence            99999999999998755

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.04  E-value=0.45  Score=41.11  Aligned_cols=71  Identities=28%  Similarity=0.488  Sum_probs=43.4

Q ss_pred             cccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        269 GKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       269 G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      |..+.+.|.+ .+.|.+.++|..++..+....     .........+.....+.|.+..-...+...+.|.+.+..-
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASN-----TTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEE-----EEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeee-----eeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            6789999955 668899999999876661100     1111222334444556777764444456679999987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=88.88  E-value=0.26  Score=53.98  Aligned_cols=43  Identities=12%  Similarity=0.105  Sum_probs=32.8

Q ss_pred             ccHHHHHhcc--cCCCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        431 YTSVNATSAT--CMDKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       431 fs~~El~~AT--~~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |+.+|+.+++  --++|.....||+|+||.||+|+  .+|..||++.
T Consensus         1 ~~~~~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~   47 (342)
T cd07879           1 FYREEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKK   47 (342)
T ss_pred             CchhhhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEE
Confidence            4556666653  01466667799999999999999  6899999886

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=88.77  E-value=0.23  Score=52.74  Aligned_cols=29  Identities=10%  Similarity=0.113  Sum_probs=25.1

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |.....||+|+||.||+|.  .+|..||++.
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~   32 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKK   32 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEE
Confidence            4455689999999999998  7899999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=88.76  E-value=0.4  Score=48.18  Aligned_cols=29  Identities=24%  Similarity=0.132  Sum_probs=25.5

Q ss_pred             CCCCCccccCCCCcceEEe-eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT-DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~-~dG~~VA~~~  473 (767)
                      +.-.+.||+|+||.||+|. .+|+.||++.
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~   46 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKF   46 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEE
Confidence            4455689999999999999 8999999986

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=88.72  E-value=0.25  Score=43.89  Aligned_cols=29  Identities=17%  Similarity=0.073  Sum_probs=16.1

Q ss_pred             eeEEEeeehhhHHHHHHHHHHHhhhhhhh
Q psy12044        372 VLIVSGIISVCSLVLIFLLVLCFLCFRRK  400 (767)
Q Consensus       372 ~~iIigivv~llvllllvvivi~~~~rRr  400 (767)
                      .++|+||++++++++.+++.+++|++.+|
T Consensus        65 ~gaiagi~vg~~~~v~~lv~~l~w~f~~r   93 (96)
T PTZ00382         65 TGAIAGISVAVVAVVGGLVGFLCWWFVCR   93 (96)
T ss_pred             cccEEEEEeehhhHHHHHHHHHhheeEEe
Confidence            36778877766655544444444444333

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=88.66  E-value=0.22  Score=31.47  Aligned_cols=13  Identities=31%  Similarity=0.317  Sum_probs=6.4

Q ss_pred             ccEEeccCCCccc
Q psy12044        149 LVTLELSKCGIEV  161 (767)
Q Consensus       149 L~~L~Ls~N~L~~  161 (767)
                      |+.|+|++|+|+.
T Consensus         2 L~~Ldls~n~l~~   14 (22)
T PF00560_consen    2 LEYLDLSGNNLTS   14 (22)
T ss_dssp             ESEEEETSSEESE
T ss_pred             ccEEECCCCcCEe
Confidence            4445555555553

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.48  E-value=0.27  Score=29.09  Aligned_cols=16  Identities=38%  Similarity=0.648  Sum_probs=6.6

Q ss_pred             CCCeeeccCCcccccc
Q psy12044        172 SLEWLKLDNNKITTIS  187 (767)
Q Consensus       172 ~L~~L~Ls~N~Lt~ip  187 (767)
                      +|+.|+|++|+|+.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555443

...

>KOG0658|consensus

Probab=88.47  E-value=0.26  Score=53.36  Aligned_cols=29  Identities=17%  Similarity=0.176  Sum_probs=25.5

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +...++||.|+||.||+|+  .++..||++.
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKK   56 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKK   56 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEE
Confidence            3356799999999999999  7789999988

>KOG0574|consensus

Probab=88.12  E-value=0.16  Score=53.51  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=23.3

Q ss_pred             CccccCCCCcceEEe--eCCceEEEec
Q psy12044        449 YIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ..||+|+||.||||.  ..|.+||++-
T Consensus        39 ~KLGEGSYGSV~KAIH~EsG~v~AIK~   65 (502)
T KOG0574|consen   39 GKLGEGSYGSVHKAIHRESGHVLAIKK   65 (502)
T ss_pred             HHhcCCcchHHHHHHHhccCcEEEEEe
Confidence            469999999999999  9999999987

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=88.06  E-value=0.62  Score=41.84  Aligned_cols=75  Identities=20%  Similarity=0.305  Sum_probs=44.1

Q ss_pred             eecccccccccccccccCCCcEEEeecC----ee---ccCCCc-c-----cccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDG----VP---IQNESM-S-----ASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g----~~---l~~~s~-~-----~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      .+..|+.++|.|.........+.|++..    ..   +..... .     ........+... .......|.|.++..+|
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~-~~~~~~~L~I~~~~~sD   80 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS-RSSNSFVLTLKNFQKEN   80 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE-ecCCEEEEEECCCCHHH
Confidence            3567999999998866556679998832    11   110000 0     000000011100 11245579999999999


Q ss_pred             CCceeEeec
Q psy12044        332 NGTFVCVAE  340 (767)
Q Consensus       332 ~GtY~CvA~  340 (767)
                      .|+|.|...
T Consensus        81 sgtY~Ca~~   89 (104)
T cd05720          81 EGYYFCSVA   89 (104)
T ss_pred             CEEEEEEEc
Confidence            999999875

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PTZ00284 protein kinase; Provisional

Probab=88.06  E-value=0.18  Score=57.88  Aligned_cols=39  Identities=10%  Similarity=0.042  Sum_probs=31.5

Q ss_pred             HHHHhcccCCCCCCCCccccCCCCcceEEe--eCCceEEEecc
Q psy12044        434 VNATSATCMDKVNGGYIIADGHNDMMLYAT--DSGILVATNNM  474 (767)
Q Consensus       434 ~El~~AT~~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~~  474 (767)
                      +++...+  ++|.-..+||+|+||+||+|.  .+|..||+|..
T Consensus       122 ~~~~~~~--~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i  162 (467)
T PTZ00284        122 EDIDVST--QRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIV  162 (467)
T ss_pred             CccccCC--CcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEE
Confidence            3444455  678878899999999999998  77899999873

>KOG0662|consensus

Probab=87.97  E-value=0.23  Score=48.64  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=23.2

Q ss_pred             CccccCCCCcceEEe--eCCceEEEec
Q psy12044        449 YIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ..||||.||+|+||.  ..+++||-++
T Consensus         8 ekigegtygtvfkarn~~t~eivalkr   34 (292)
T KOG0662|consen    8 EKIGEGTYGTVFKARNRETHEIVALKR   34 (292)
T ss_pred             HhhcCCcceeeEecccCCccceEEEEE
Confidence            469999999999999  8899999998

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=87.91  E-value=0.36  Score=48.31  Aligned_cols=24  Identities=21%  Similarity=0.212  Sum_probs=22.9

Q ss_pred             ccccCCCCcceEEe-eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT-DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~-~dG~~VA~~~  473 (767)
                      .||+|+||.||+|. .+|+.||+|.
T Consensus         4 ~ig~G~~~~Vy~a~~~~g~~vavKv   28 (190)
T cd05145           4 CISTGKEANVYHARTGDGEELAVKI   28 (190)
T ss_pred             eeecCCCcEEEEEEcCCCCEEEEEE
Confidence            69999999999999 8999999988

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=87.71  E-value=0.32  Score=51.17  Aligned_cols=30  Identities=10%  Similarity=0.096  Sum_probs=26.3

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||.||||+  .+|..||++.
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~   33 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKR   33 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEE
Confidence            55666689999999999999  7899999987

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG0201|consensus

Probab=87.62  E-value=0.33  Score=53.82  Aligned_cols=30  Identities=17%  Similarity=0.031  Sum_probs=26.0

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      -|...-+||+|.||.||||.  ..+++||.|-
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKi   45 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKI   45 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEE
Confidence            35555689999999999999  8999999987

>cd05119 RIO RIO kinase family, catalytic domain

Probab=87.59  E-value=0.36  Score=47.63  Aligned_cols=25  Identities=24%  Similarity=0.154  Sum_probs=22.9

Q ss_pred             CccccCCCCcceEEe-eCCceEEEec
Q psy12044        449 YIIADGHNDMMLYAT-DSGILVATNN  473 (767)
Q Consensus       449 nlIG~GgfG~VYKG~-~dG~~VA~~~  473 (767)
                      ++||+|+||.||+|. .+|+.||++.
T Consensus         3 ~~lg~G~~g~Vy~a~~~~~~~vavKv   28 (187)
T cd05119           3 GPIGTGKEADVYLALDGDGEPVAVKI   28 (187)
T ss_pred             cccccccceeEEEEECCCCCEEEEEE
Confidence            479999999999999 8899999986

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK09188 serine/threonine protein kinase; Provisional

Probab=87.54  E-value=0.36  Score=53.66  Aligned_cols=31  Identities=6%  Similarity=-0.017  Sum_probs=26.8

Q ss_pred             CCCCCCCccccCCCCcceEEe--e-CCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--D-SGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~-dG~~VA~~~  473 (767)
                      +.|.-...||+|+||+||+|.  . +|++||++.
T Consensus        18 ~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~   51 (365)
T PRK09188         18 ARFVETAVLKRDVFSTVERGYFAGDPGTARAVRR   51 (365)
T ss_pred             CCceEccEEeecCcEEEEEEEEcCCCCeEEEEEE
Confidence            567778899999999999997  3 788999976

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=87.43  E-value=0.33  Score=52.75  Aligned_cols=29  Identities=17%  Similarity=0.133  Sum_probs=25.4

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |+-.++||+|+||.||+|.  .+|..||++.
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~   32 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKI   32 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEE
Confidence            5566789999999999998  7899999876

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=87.30  E-value=1.8  Score=37.33  Aligned_cols=65  Identities=22%  Similarity=0.349  Sum_probs=40.5

Q ss_pred             ccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCC-CceeEeeccCCC
Q psy12044        272 VSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDN-GTFVCVAENQAG  344 (767)
Q Consensus       272 vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~-GtY~CvA~N~~G  344 (767)
                      +.|.|.+.+ -|.+.|+|++++..+......       ...........++|.+. ...+|. ..|+|.|.|+.-
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-------~~~~~~~~t~~S~L~~~-p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-------EETWSRMFTVTSQLMLK-VTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc-------eeccCCCcEEEEEEEEE-CchhhCCCEEEEEEcCccc
Confidence            457887765 578899999998877543210       00111223445667774 445554 469999998763

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=87.30  E-value=0.25  Score=52.42  Aligned_cols=41  Identities=20%  Similarity=0.072  Sum_probs=35.3

Q ss_pred             ccHHHHHhcccCCCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        431 YTSVNATSATCMDKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       431 fs~~El~~AT~~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++..++..++  ++|.-...||+|+||.||+++  .+|+.+|.+.
T Consensus        12 ~~~~~~~~~~--~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~   54 (291)
T cd06639          12 LGLESLGDPT--DTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKI   54 (291)
T ss_pred             hhcccCCCCC--CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEE
Confidence            4456777788  889988999999999999999  7889999876

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=87.02  E-value=1.8  Score=40.96  Aligned_cols=77  Identities=17%  Similarity=0.286  Sum_probs=45.2

Q ss_pred             ccccccccccccccc-CC-CcEEEeecCeeccCCCcccccc--cceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        267 QEGKNVSLLCKVSAI-PE-AKITWLFDGVPIQNESMSASES--HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       267 ~~G~~vsL~C~a~g~-P~-p~itW~~~g~~l~~~s~~~~~~--~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..|..+.|.|.+.+. |. ..+.|.+++.............  .......++.....+.|.+..-...+...|+|.+...
T Consensus        51 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~  130 (139)
T cd05771          51 MIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV  130 (139)
T ss_pred             ecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence            367788999999996 43 4899999875322100000000  0122234455566677777644444566899999754


Q ss_pred             C
Q psy12044        343 A  343 (767)
Q Consensus       343 ~  343 (767)
                      .
T Consensus       131 ~  131 (139)
T cd05771         131 S  131 (139)
T ss_pred             C
Confidence            3

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF15102 TMEM154: TMEM154 protein family

Probab=87.00  E-value=0.45  Score=45.09  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=9.7

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhcc
Q psy12044        381 VCSLVLIFLLVLCFLCFRRKKKK  403 (767)
Q Consensus       381 ~llvllllvvivi~~~~rRrrr~  403 (767)
                      +++++++++++++++++||||.|
T Consensus        66 VLLvlLLl~vV~lv~~~kRkr~K   88 (146)
T PF15102_consen   66 VLLVLLLLSVVCLVIYYKRKRTK   88 (146)
T ss_pred             HHHHHHHHHHHHheeEEeecccC
Confidence            33334444444444444444443

>KOG0594|consensus

Probab=86.96  E-value=0.4  Score=51.69  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=23.0

Q ss_pred             CccccCCCCcceEEe--eCCceEEEec
Q psy12044        449 YIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ..||+|.||+||||.  .+|..||.+.
T Consensus        17 eklGeGtyg~Vykar~~~~g~~VALKk   43 (323)
T KOG0594|consen   17 EKLGEGTYGVVYKARSKRTGKFVALKK   43 (323)
T ss_pred             HHhCCCCceEEEEEEEecCCCEEEEEE
Confidence            369999999999999  8999999988

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=86.89  E-value=1.6  Score=38.88  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=23.5

Q ss_pred             eeeEEEEeeeccCCCCceeEeeccC-CCCc
Q psy12044        318 KKSELLIYNSNIDDNGTFVCVAENQ-AGST  346 (767)
Q Consensus       318 ~~s~L~I~nvs~sD~GtY~CvA~N~-~G~s  346 (767)
                      ...+|.|.+++.+|.|.|.|..... .|..
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~   87 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSW   87 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCe
Confidence            4578999999999999999988544 4443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=86.62  E-value=1.9  Score=36.04  Aligned_cols=67  Identities=24%  Similarity=0.488  Sum_probs=41.7

Q ss_pred             cccccccccc-C-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        272 VSLLCKVSAI-P-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       272 vsL~C~a~g~-P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ++|.|.+.+. | ...++|.+++..+......    .......++.....+.|.+......+...|+|.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~----~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVST----TDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEE----CceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            4689999887 3 3589999988764322111    0011123455555667776655556677899998654

>KOG0600|consensus

Probab=86.61  E-value=0.37  Score=54.32  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=37.8

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec--ccc---CCCcc-------hhhhhhhCCCCcccchhhc
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN--MNT---YPSYS-------ISYQIEQNPDLVNDAESVD  500 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~--~~~---~~~~~-------~~~~~e~npdlin~~e~~~  500 (767)
                      |..-..||+|-||.||||.  .+|.+||-+.  .+.   =+|-.       ++++.  +|.+|+=-|.|-
T Consensus       119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~--HpNIikL~eivt  186 (560)
T KOG0600|consen  119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLD--HPNIIKLEEIVT  186 (560)
T ss_pred             HHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcC--CCcccceeeEEE
Confidence            3333479999999999999  9999999988  221   12322       24444  888888776665

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=86.59  E-value=0.32  Score=51.27  Aligned_cols=42  Identities=12%  Similarity=-0.010  Sum_probs=35.2

Q ss_pred             cccHHHHHhcccCCCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        430 KYTSVNATSATCMDKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       430 ~fs~~El~~AT~~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .+.+.++..++  ++|.-...||+|+||.|||+.  .+|+.+|.+.
T Consensus         7 ~~~~~~~~~~~--~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~   50 (286)
T cd06638           7 TIIFDSFPDPS--DTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKI   50 (286)
T ss_pred             eEEeecCCCcc--cceeeeeeeccCCCcEEEEEEECCCCceeEEEe
Confidence            34566677778  888888899999999999998  7888998875

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.55  E-value=0.48  Score=31.04  Aligned_cols=21  Identities=43%  Similarity=0.765  Sum_probs=9.8

Q ss_pred             CCCCEEEccCCCCCCCCCCCC
Q psy12044         99 TNLVDLDFSHNVLQTVPSDTF  119 (767)
Q Consensus        99 ~~L~~L~Ls~N~Lt~l~p~~f  119 (767)
                      ++|+.|+|++|.|+.+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            344455555555544444433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.55  E-value=0.48  Score=31.04  Aligned_cols=21  Identities=43%  Similarity=0.765  Sum_probs=9.8

Q ss_pred             CCCCEEEccCCCCCCCCCCCC
Q psy12044         99 TNLVDLDFSHNVLQTVPSDTF  119 (767)
Q Consensus        99 ~~L~~L~Ls~N~Lt~l~p~~f  119 (767)
                      ++|+.|+|++|.|+.+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            344455555555544444433

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=86.07  E-value=0.41  Score=52.73  Aligned_cols=30  Identities=17%  Similarity=0.209  Sum_probs=26.1

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||.||+|.  .+|+.||++.
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~   33 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKK   33 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEE
Confidence            45566789999999999999  7899999887

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=86.02  E-value=0.52  Score=52.21  Aligned_cols=30  Identities=23%  Similarity=0.171  Sum_probs=26.2

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.....||+|+||.||+|.  .+|+.||++.
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~   32 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKK   32 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEe
Confidence            35666789999999999999  7899999987

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=85.77  E-value=0.43  Score=50.57  Aligned_cols=28  Identities=11%  Similarity=0.114  Sum_probs=24.0

Q ss_pred             CCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        446 NGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       446 s~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ....+||+|+||+||+|.  .+|+.||++.
T Consensus         3 ~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~   32 (285)
T cd05632           3 RQYRVLGKGGFGEVCACQVRATGKMYACKR   32 (285)
T ss_pred             eEEEEEecCCCeEEEEEEECCCCcEEEEEE
Confidence            344589999999999999  7899999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG4308|consensus

Probab=85.58  E-value=0.028  Score=64.54  Aligned_cols=134  Identities=26%  Similarity=0.296  Sum_probs=61.4

Q ss_pred             ccEEEeeCCCCCCCCchhhhc--cCCCCccEEEccCCCCCccCc----ccccCC-CCCCEEEccCCCCCCCCC----CCC
Q psy12044         51 TQVLDYTGNNLKTLHNEKFQK--MGLVNLQKIYLSRCRISVIDS----KAFRGL-TNLVDLDFSHNVLQTVPS----DTF  119 (767)
Q Consensus        51 L~~L~Ls~N~L~~l~~~~f~~--~~L~~L~~L~Ls~N~L~~i~p----~~f~~L-~~L~~L~Ls~N~Lt~l~p----~~f  119 (767)
                      +..|.|.+|.+..-....+..  ..+..|..|+++.|.+....-    ..+... ..|+.|++..|.++....    ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            556666666666544333321  134556666666666663221    112222 345555555555554321    223


Q ss_pred             CCCCCCcEEECCCCcCccc----ccCC----cCCCCCccEEeccCCCccccc----hhhhcCCCC-CCeeeccCCccc
Q psy12044        120 PDYPSLMKLTLSGNPIKQI----KTGA----FQPLSYLVTLELSKCGIEVIE----DAAFVGLDS-LEWLKLDNNKIT  184 (767)
Q Consensus       120 ~~l~~L~~L~Ls~N~l~~l----~~~~----~~~l~~L~~L~Ls~N~L~~i~----~~~~~~l~~-L~~L~Ls~N~Lt  184 (767)
                      .....|+.++++.|.+...    ....    +....++++|.|++|.++...    ...+....+ +..|++..|++.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            3345556666666655311    1111    122445556666666554221    112222333 444555555554

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=85.56  E-value=0.31  Score=50.89  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=27.8

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEecc
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNNM  474 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~~  474 (767)
                      +.|.....||+|+||.||+|.  .++..||++..
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~   39 (272)
T cd06637           6 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVM   39 (272)
T ss_pred             hhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEE
Confidence            567777889999999999998  78899998873

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=85.36  E-value=0.56  Score=50.73  Aligned_cols=24  Identities=13%  Similarity=0.270  Sum_probs=21.8

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||.||+|.  .+|..||++.
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~   27 (316)
T cd05592           2 VLGKGSFGKVMLAELKGTNEFFAIKA   27 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEE
Confidence            69999999999998  7788999876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG1166|consensus

Probab=85.22  E-value=0.39  Score=59.14  Aligned_cols=31  Identities=29%  Similarity=0.266  Sum_probs=27.0

Q ss_pred             CCCCCCCccccCCCCcceEEe-eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT-DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~-~dG~~VA~~~  473 (767)
                      ..|.=..+||+|+||+||+|+ .+|.+||.+-
T Consensus       698 ~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~  729 (974)
T KOG1166|consen  698 EKFCISKEIGEGSYGSVYVATHSNGKLVALKV  729 (974)
T ss_pred             eeEEEEeeeccccceEEEEeecCCCcEEEEEe
Confidence            445556799999999999999 8899999987

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=85.13  E-value=0.51  Score=51.17  Aligned_cols=29  Identities=17%  Similarity=0.133  Sum_probs=24.3

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |.-...||+|+||.||+|.  .+|..||++.
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~   32 (323)
T cd05616           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKI   32 (323)
T ss_pred             ceEEEEEeeCCCeEEEEEEECCCCCEEEEEE
Confidence            4445689999999999998  6788999876

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG4222|consensus

Probab=85.12  E-value=1.6  Score=53.54  Aligned_cols=94  Identities=22%  Similarity=0.324  Sum_probs=62.4

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +...+....+..|..++|.|.+.+.|.|.++|.+.+....-....+...+     ..+.....+.|+|.++...|.|-|.
T Consensus       318 f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~-----~r~svs~~g~L~it~v~~~d~g~Yv  392 (1281)
T KOG4222|consen  318 FGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSN-----GRGSVSPTGTLTITNVRQSDEGYYV  392 (1281)
T ss_pred             cccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcC-----ccceecCCCCcccccccccccceEe
Confidence            33334445677888999999999999999999996643322111111111     0111122347999999999999999


Q ss_pred             EeeccCCCCcccceEEEEE
Q psy12044        337 CVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V~  355 (767)
                      |...+.+|.......+.++
T Consensus       393 cq~~~~~~ss~~~a~~~qt  411 (1281)
T KOG4222|consen  393 CQTQTSAGSSLTKAYLEQT  411 (1281)
T ss_pred             ecccccccccccceeEEEE
Confidence            9998888877665444433

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=85.09  E-value=0.33  Score=51.09  Aligned_cols=30  Identities=20%  Similarity=0.389  Sum_probs=25.4

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-.+.||+|+||.||+|.  .+|..||++.
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~   33 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKK   33 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEe
Confidence            45556789999999999999  5789999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>KOG0661|consensus

Probab=84.98  E-value=0.38  Score=53.91  Aligned_cols=51  Identities=20%  Similarity=0.275  Sum_probs=37.5

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec--cccCCCcchhhh------h--hhCCCCcccchhhc
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN--MNTYPSYSISYQ------I--EQNPDLVNDAESVD  500 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~--~~~~~~~~~~~~------~--e~npdlin~~e~~~  500 (767)
                      .||.|.||.||+|+  .+|..||+++  ...|+-...+++      .  -.||.+|+=-|++-
T Consensus        17 klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~   79 (538)
T KOG0661|consen   17 KLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIR   79 (538)
T ss_pred             HhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhh
Confidence            69999999999999  9999999999  334442222222      2  34899998777775

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=84.89  E-value=0.56  Score=49.79  Aligned_cols=31  Identities=13%  Similarity=0.056  Sum_probs=26.4

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +.|.-...||+|+||.||+|.  .+|..||++.
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~   37 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKE   37 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEE
Confidence            456666789999999999998  7889999876

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=84.72  E-value=0.63  Score=49.53  Aligned_cols=30  Identities=10%  Similarity=-0.066  Sum_probs=25.6

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||.||+|.  .+|+.||++.
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~   33 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKV   33 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEE
Confidence            45556689999999999999  6899999876

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>PHA02882 putative serine/threonine kinase; Provisional

Probab=84.71  E-value=0.57  Score=50.00  Aligned_cols=30  Identities=7%  Similarity=-0.068  Sum_probs=21.6

Q ss_pred             CCCCCCccccCCCCcceEEe--eC---CceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DS---GILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~d---G~~VA~~~  473 (767)
                      .|.-..+||+||||+||||.  .+   +..+|++.
T Consensus        13 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~   47 (294)
T PHA02882         13 EWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKI   47 (294)
T ss_pred             ceEEeeEEecCCCceEEEEEEcCCcccccceEEEe
Confidence            34445689999999999999  44   44566554

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=84.60  E-value=0.57  Score=50.47  Aligned_cols=31  Identities=13%  Similarity=0.114  Sum_probs=25.3

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCce----EEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGIL----VATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~----VA~~~  473 (767)
                      +.|...+.||+|+||.||||+  .+|..    ||++.
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~   43 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKE   43 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEe
Confidence            468888899999999999998  56665    67665

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=84.51  E-value=0.55  Score=52.32  Aligned_cols=29  Identities=17%  Similarity=0.024  Sum_probs=24.9

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |..-..||+|+||+||+|.  .+|..||+|.
T Consensus         3 f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~   33 (381)
T cd05626           3 FVKIKTLGIGAFGEVCLACKVDTHALYAMKT   33 (381)
T ss_pred             ceEEEEEeecCCEEEEEEEECCCCCEEEEEE
Confidence            4445689999999999998  8899999876

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG4236|consensus

Probab=84.22  E-value=0.47  Score=53.65  Aligned_cols=54  Identities=15%  Similarity=0.262  Sum_probs=38.9

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEeccc--cCCCcchhhhhhhCCCCcccchhhcccccc
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNNMN--TYPSYSISYQIEQNPDLVNDAESVDKDRRA  505 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~~~--~~~~~~~~~~~e~npdlin~~e~~~~~~~~  505 (767)
                      -|.++ +||+|.||+||-|.  .+|+-||++--|  -++++       |.--|-|||-+.++..-+
T Consensus       566 if~de-vLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~k-------qesqlR~EVaILq~l~HP  623 (888)
T KOG4236|consen  566 IFADE-VLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTK-------QESQLRNEVAILQNLHHP  623 (888)
T ss_pred             hhhHh-hccCCcceeeecceecccCceeeeeeeecccCCCc-------hHHHHHHHHHHHHhcCCC
Confidence            35566 99999999999999  999999998733  33333       224466777777765553

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=84.19  E-value=0.6  Score=50.05  Aligned_cols=32  Identities=22%  Similarity=0.275  Sum_probs=28.5

Q ss_pred             CCCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        442 MDKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       442 ~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +++|.-.+.||+|+||.||+|.  .+|..||++.
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~   39 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKK   39 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEE
Confidence            3678888899999999999999  7899999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.97  E-value=0.84  Score=29.87  Aligned_cols=16  Identities=25%  Similarity=0.343  Sum_probs=6.3

Q ss_pred             ccEEeccCCCccccch
Q psy12044        149 LVTLELSKCGIEVIED  164 (767)
Q Consensus       149 L~~L~Ls~N~L~~i~~  164 (767)
                      |+.|+|++|.|+.+++
T Consensus         4 L~~L~L~~N~l~~lp~   19 (26)
T smart00370        4 LRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCEEECCCCcCCcCCH
Confidence            3334444444433333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.97  E-value=0.84  Score=29.87  Aligned_cols=16  Identities=25%  Similarity=0.343  Sum_probs=6.3

Q ss_pred             ccEEeccCCCccccch
Q psy12044        149 LVTLELSKCGIEVIED  164 (767)
Q Consensus       149 L~~L~Ls~N~L~~i~~  164 (767)
                      |+.|+|++|.|+.+++
T Consensus         4 L~~L~L~~N~l~~lp~   19 (26)
T smart00369        4 LRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCEEECCCCcCCcCCH
Confidence            3334444444433333

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=83.92  E-value=0.5  Score=49.74  Aligned_cols=30  Identities=20%  Similarity=0.193  Sum_probs=26.0

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ||.....||+|+||.||||+  .+|..||++.
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~   32 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKK   32 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEE
Confidence            45666789999999999998  6899999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=83.72  E-value=1.4  Score=40.48  Aligned_cols=78  Identities=18%  Similarity=0.232  Sum_probs=44.8

Q ss_pred             ceeecccccccccccccccC--CCcEEEeec--Cee---ccCC-Ccc-----cccc-cceeecccCcceeeeEEEEeeec
Q psy12044        263 YLEIQEGKNVSLLCKVSAIP--EAKITWLFD--GVP---IQNE-SMS-----ASES-HAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P--~p~itW~~~--g~~---l~~~-s~~-----~~~~-~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      ...+..|+.++|.|......  ...+.|++.  +..   +... ...     .... .++... .........|.|.++.
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~-~~~~~~~~~L~I~~~~   84 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTIT-RDTSKSTVYLQLNSLT   84 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEE-EEccCCEEEEEECCCC
Confidence            45678899999999875433  566899872  221   1100 000     0000 001110 0011123469999999


Q ss_pred             cCCCCceeEeecc
Q psy12044        329 IDDNGTFVCVAEN  341 (767)
Q Consensus       329 ~sD~GtY~CvA~N  341 (767)
                      .+|.|+|.|....
T Consensus        85 ~~Dsa~YyCa~~~   97 (117)
T cd04981          85 PEDTAVYYCARGL   97 (117)
T ss_pred             HHHCEEEEEEEEc
Confidence            9999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=83.65  E-value=0.72  Score=49.90  Aligned_cols=24  Identities=13%  Similarity=0.261  Sum_probs=21.8

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||.||+|.  .+|..||++.
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~   27 (316)
T cd05619           2 MLGKGSFGKVFLAELKGTNQFFAIKA   27 (316)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEE
Confidence            69999999999999  6788999876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=83.56  E-value=1.4  Score=39.75  Aligned_cols=75  Identities=21%  Similarity=0.316  Sum_probs=43.1

Q ss_pred             eeccccccccccccccc-CCCcEEEeecCee-----cc---CCCcc-----cccc--cceeecccCcceeeeEEEEeeec
Q psy12044        265 EIQEGKNVSLLCKVSAI-PEAKITWLFDGVP-----IQ---NESMS-----ASES--HAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~-----l~---~~s~~-----~~~~--~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      .+..|+.++|.|..... ....+.|++...-     +.   .....     ....  ..+... .........|.|.++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~-~~~~~~~~~L~I~~~~   80 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIR-VTSDSSRYRLHINRVK   80 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEE-EECCCCEEEEEECCCC
Confidence            46789999999998654 3457899883211     00   00000     0000  001100 0111224579999999


Q ss_pred             cCCCCceeEeec
Q psy12044        329 IDDNGTFVCVAE  340 (767)
Q Consensus       329 ~sD~GtY~CvA~  340 (767)
                      .+|.|.|.|...
T Consensus        81 ~~Dsg~YyCa~~   92 (107)
T cd07700          81 PEDSGTYFCMTV   92 (107)
T ss_pred             HHHCEEEEEeEc
Confidence            999999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=83.38  E-value=0.67  Score=49.13  Aligned_cols=29  Identities=10%  Similarity=0.113  Sum_probs=24.3

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |.-..+||+|+||.||++.  .+|..||++.
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~   32 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKK   32 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEE
Confidence            3344589999999999999  7899999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=83.34  E-value=0.68  Score=48.85  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=25.6

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||.||+|.  .+|..||++.
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~   33 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKK   33 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEE
Confidence            45556689999999999999  6889999987

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=83.28  E-value=0.65  Score=50.38  Aligned_cols=30  Identities=13%  Similarity=0.170  Sum_probs=26.0

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||.||++.  .+|..||++.
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~   33 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKV   33 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEE
Confidence            45566789999999999999  7899999887

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=83.26  E-value=0.78  Score=49.62  Aligned_cols=24  Identities=13%  Similarity=0.220  Sum_probs=21.8

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||.||+|+  .+|..||++.
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~   27 (321)
T cd05591           2 VLGKGSFGKVMLAELKGTDEVYAIKV   27 (321)
T ss_pred             ccccCCCeEEEEEEECCCCCEEEEEE
Confidence            69999999999998  6788999876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=83.12  E-value=0.79  Score=49.65  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=22.3

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||+||+|.  .+|+.||++.
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~vaiK~   27 (323)
T cd05575           2 VIGKGSFGKVLLAKHKADGKFYAVKV   27 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEE
Confidence            69999999999999  7899999987

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>PTZ00036 glycogen synthase kinase; Provisional

Probab=83.04  E-value=0.58  Score=53.43  Aligned_cols=31  Identities=26%  Similarity=0.282  Sum_probs=26.7

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .+|.-..+||+|+||.||+|.  .+|..||++.
T Consensus        66 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~   98 (440)
T PTZ00036         66 KSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKK   98 (440)
T ss_pred             CeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEE
Confidence            456666789999999999999  7889999986

>smart00406 IGv Immunoglobulin V-Type

Probab=82.97  E-value=1  Score=37.44  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=19.2

Q ss_pred             eeeeEEEEeeeccCCCCceeEe
Q psy12044        317 IKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       317 ~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .....|.|.+++.+|.|.|.|.
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       59 KNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEc
Confidence            3456899999999999999995

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=82.92  E-value=0.81  Score=49.84  Aligned_cols=25  Identities=16%  Similarity=0.204  Sum_probs=22.3

Q ss_pred             CccccCCCCcceEEe--eCCceEEEec
Q psy12044        449 YIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .+||+|+||.||+|.  .+|+.||++.
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~   27 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKV   27 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEE
Confidence            379999999999999  7889999876

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=82.92  E-value=0.81  Score=49.46  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||.||+|.  .+|..||++.
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~aiK~   27 (321)
T cd05603           2 VIGKGSFGKVLLAKRKSDGSFYAVKV   27 (321)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEE
Confidence            79999999999999  7899999876

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=82.77  E-value=0.83  Score=49.52  Aligned_cols=24  Identities=13%  Similarity=0.241  Sum_probs=22.0

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||.||++.  .+|..||++.
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~   27 (323)
T cd05571           2 LLGKGTFGKVILVREKATGKYYAMKI   27 (323)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEE
Confidence            79999999999998  7899999876

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=82.77  E-value=0.98  Score=47.10  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=27.5

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||....+||+|+||.||+|.  .+|..||++.
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~   34 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQ   34 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEE
Confidence            478888899999999999998  6789999876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=82.66  E-value=0.77  Score=27.15  Aligned_cols=10  Identities=50%  Similarity=0.597  Sum_probs=3.0

Q ss_pred             CCEEEccCCC
Q psy12044        101 LVDLDFSHNV  110 (767)
Q Consensus       101 L~~L~Ls~N~  110 (767)
                      |+.|+|++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=82.53  E-value=0.87  Score=49.36  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=22.2

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||.||+|.  .+|..||++.
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~   27 (325)
T cd05604           2 VIGKGSFGKVLLAKRKLDGKCYAVKV   27 (325)
T ss_pred             ceeeCCCeEEEEEEECCCCCEEEEEE
Confidence            69999999999998  7899999886

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=82.49  E-value=0.78  Score=50.95  Aligned_cols=30  Identities=17%  Similarity=0.215  Sum_probs=25.6

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||.||++.  .+|..||++.
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~   33 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKT   33 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEE
Confidence            45555689999999999998  8999999876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=82.47  E-value=0.87  Score=49.35  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=22.0

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||.||+|.  .+|+.||++.
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~aiK~   27 (320)
T cd05590           2 VLGKGSFGKVMLARLKESGRLYAVKV   27 (320)
T ss_pred             eeeeCCCeEEEEEEEcCCCCEEEEEE
Confidence            79999999999999  7899999876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=82.42  E-value=0.91  Score=46.68  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=22.2

Q ss_pred             ccccCCCCcceEEe-eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT-DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~-~dG~~VA~~~  473 (767)
                      +||+|+||.||+|. .++..||.+.
T Consensus         2 ~ig~g~~g~vy~~~~~~~~~~a~K~   26 (250)
T cd05085           2 LLGKGNFGEVFKGTLKDKTPVAVKT   26 (250)
T ss_pred             ccCCCCCceEEEEEecCCcEEEEEe
Confidence            79999999999999 8899999876

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=82.38  E-value=0.75  Score=50.12  Aligned_cols=30  Identities=10%  Similarity=-0.017  Sum_probs=25.0

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||.||++.  .+|..||++.
T Consensus         2 ~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~   33 (331)
T cd05624           2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKI   33 (331)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEE
Confidence            34445689999999999999  7888999876

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=82.35  E-value=0.72  Score=50.37  Aligned_cols=30  Identities=17%  Similarity=0.141  Sum_probs=25.3

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||.||+|.  .+|..||++.
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~   33 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKV   33 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEE
Confidence            34455689999999999999  6899999877

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=82.33  E-value=0.76  Score=49.82  Aligned_cols=29  Identities=17%  Similarity=0.133  Sum_probs=23.9

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |.-...||+|+||.||+|.  .+|..||++.
T Consensus         2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~   32 (324)
T cd05587           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKI   32 (324)
T ss_pred             ceEEEEEeeccCeEEEEEEECCCCCEEEEEE
Confidence            3344589999999999998  6788999876

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=82.33  E-value=0.76  Score=49.30  Aligned_cols=31  Identities=13%  Similarity=0.051  Sum_probs=26.0

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +.|.-...||+|+||.||+|+  .+|..||++.
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~   38 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKE   38 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEE
Confidence            345556689999999999999  6888999886

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG0473|consensus

Probab=82.28  E-value=0.067  Score=54.54  Aligned_cols=83  Identities=18%  Similarity=0.132  Sum_probs=47.6

Q ss_pred             CCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCC
Q psy12044        123 PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLH  202 (767)
Q Consensus       123 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls  202 (767)
                      ...+.||++.|++-.+.. .|..++.|..|+|+.|.+.-.+. .+..+..+..+++..|.++..|......+.++.+++.
T Consensus        42 kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~-d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPK-DAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             ceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChh-hHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence            344444555554443322 24445555556666665554433 3555556666666677777777666666677777777


Q ss_pred             CCCCC
Q psy12044        203 HNPWT  207 (767)
Q Consensus       203 ~N~l~  207 (767)
                      +|+|.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            77754

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=82.21  E-value=0.89  Score=49.33  Aligned_cols=24  Identities=13%  Similarity=0.236  Sum_probs=22.1

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||.||++.  .+|..||++.
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~   27 (323)
T cd05595           2 LLGKGTFGKVILVREKATGRYYAMKI   27 (323)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEE
Confidence            79999999999998  7899999876

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=82.20  E-value=0.66  Score=51.02  Aligned_cols=27  Identities=19%  Similarity=0.116  Sum_probs=23.7

Q ss_pred             CCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        447 GGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       447 ~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ....||+|+||.||+|+  .+|+.||+|.
T Consensus        78 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~  106 (353)
T PLN00034         78 RVNRIGSGAGGTVYKVIHRPTGRLYALKV  106 (353)
T ss_pred             hhhhccCCCCeEEEEEEECCCCCEEEEEE
Confidence            34479999999999999  7899999887

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=82.18  E-value=0.81  Score=50.54  Aligned_cols=30  Identities=17%  Similarity=0.159  Sum_probs=26.0

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||+||++.  .+|..||+|.
T Consensus         2 ~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~   33 (363)
T cd05628           2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKI   33 (363)
T ss_pred             CceEeEEEEeCCCEEEEEEEECCCCCEEEEEE
Confidence            56666789999999999998  7899999876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=82.16  E-value=0.55  Score=54.53  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=27.2

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++|.-..+||+|+||.||+|.  .+|..||+|.
T Consensus        32 ~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~   64 (496)
T PTZ00283         32 KKYWISRVLGSGATGTVLCAKRVSDGEPFAVKV   64 (496)
T ss_pred             CCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEE
Confidence            556666799999999999998  7899999987

>KOG0577|consensus

Probab=82.02  E-value=0.43  Score=54.69  Aligned_cols=55  Identities=16%  Similarity=0.164  Sum_probs=37.7

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      |++-..||.|+||.||.|.  .+..+||++-|.-..-+    -.|+=-|+|-||.-+.+.+
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQ----s~EKWqDIlKEVrFL~~l~   84 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQ----SNEKWQDILKEVRFLRQLR   84 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccc----cHHHHHHHHHHHHHHHhcc
Confidence            5556689999999999999  88899999875432222    2344556666665544443

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=81.90  E-value=0.75  Score=47.40  Aligned_cols=25  Identities=20%  Similarity=0.149  Sum_probs=22.2

Q ss_pred             CccccCCCCcceEEe--eCCceEEEec
Q psy12044        449 YIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ..||+|+||+||++.  .+|..+|++.
T Consensus         5 ~~lg~G~~g~v~~~~~~~~~~~~~~K~   31 (260)
T PF00069_consen    5 KKLGSGGFGTVYKAKNKKNGQKVAVKI   31 (260)
T ss_dssp             EEEEEESSEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEeCCCEEEEEEEECCCCeEEEEEE
Confidence            379999999999999  7777899887

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=81.74  E-value=0.97  Score=48.87  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=22.0

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||.||+|.  .+|..||++.
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~avK~   27 (316)
T cd05620           2 VLGKGSFGKVLLAELKGKGEYFAVKA   27 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEE
Confidence            69999999999999  7899999876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=81.66  E-value=0.97  Score=47.75  Aligned_cols=23  Identities=17%  Similarity=0.203  Sum_probs=21.0

Q ss_pred             cccCCCCcceEEe--eCCceEEEec
Q psy12044        451 IADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       451 IG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ||+|+||+||++.  .+|..||++.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~   25 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKK   25 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEe
Confidence            7999999999998  7899999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=81.61  E-value=0.91  Score=47.24  Aligned_cols=31  Identities=16%  Similarity=0.219  Sum_probs=27.1

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++|.-.++||+|+||.||+|.  .+|..||++.
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~   34 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQ   34 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEE
Confidence            467777899999999999999  7799999876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=81.58  E-value=1  Score=46.45  Aligned_cols=46  Identities=15%  Similarity=0.224  Sum_probs=31.4

Q ss_pred             ccccCCCCcceEEe--eCCceEEEeccc-cCCCcchhhhhhhCCCCcccchhhccc
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNNMN-TYPSYSISYQIEQNPDLVNDAESVDKD  502 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~~~-~~~~~~~~~~~e~npdlin~~e~~~~~  502 (767)
                      .||+|+||.||+|+  .+|+.||.+... ..+       .+...++.+|++...+.
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~-------~~~~~~~~~e~~~l~~l   50 (252)
T cd05084           2 RIGRGNFGEVFSGRLRADNTPVAVKSCRETLP-------PDLKAKFLQEARILKQY   50 (252)
T ss_pred             ccCcccCccEEEEEEecCCceEEEEecCccCC-------HHHHHHHHHHHHHHHhC
Confidence            69999999999999  689999987521 111       12234566676665544

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=81.55  E-value=1.1  Score=47.45  Aligned_cols=29  Identities=21%  Similarity=0.209  Sum_probs=23.4

Q ss_pred             CCCCCccccCCCCcceEEe---eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT---DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~---~dG~~VA~~~  473 (767)
                      |.-...||+|+||.||+|.   .+|..||++.
T Consensus         3 Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~   34 (290)
T cd07862           3 YECVAEIGEGAYGKVFKARDLKNGGRFVALKR   34 (290)
T ss_pred             cceeeEeccCCCeEEEEEEEcCCCCeEEEEEE
Confidence            3344589999999999997   3578899886

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=81.54  E-value=0.8  Score=50.92  Aligned_cols=30  Identities=17%  Similarity=0.015  Sum_probs=25.6

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .|.-...||+|+||.||+|.  .+|..||++.
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~   33 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKT   33 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEE
Confidence            35556689999999999998  7899999876

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=81.53  E-value=0.87  Score=49.90  Aligned_cols=40  Identities=13%  Similarity=0.110  Sum_probs=33.8

Q ss_pred             cHHHHHhcccCCCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        432 TSVNATSATCMDKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       432 s~~El~~AT~~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .-.++..++  ++|.....||+|+||.||+|.  .+|..||++.
T Consensus         8 ~~~~~~~~~--~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~   49 (345)
T cd07877           8 LNKTIWEVP--ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKK   49 (345)
T ss_pred             HHHHHhhcc--CceEEEEEeeecCCeEEEEEEEcCCCeEEEEEE
Confidence            345666677  888888899999999999998  7899999987

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>PHA03376 BARF1; Provisional

Probab=81.50  E-value=4.7  Score=40.10  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=47.0

Q ss_pred             ceeeccccccccccccc---ccCCCcEEEeecCe-----eccCC---Cccc-cccc-ceeecccCcceeeeEEEEeeecc
Q psy12044        263 YLEIQEGKNVSLLCKVS---AIPEAKITWLFDGV-----PIQNE---SMSA-SESH-AVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~---g~P~p~itW~~~g~-----~l~~~---s~~~-~~~~-~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      .+....|+.+.|.|.-.   ......|.|++...     .+.-.   .... ...+ ...+...   ..+.+|.|.++..
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~---~gnvsLvI~~l~l   96 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS---ANTFFLVVTAANI   96 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEec---CCeEEEEEEeeee
Confidence            34566788999999654   23567899998321     11100   0000 0000 0111111   1466899999999


Q ss_pred             CCCCceeEeeccCCCCc
Q psy12044        330 DDNGTFVCVAENQAGST  346 (767)
Q Consensus       330 sD~GtY~CvA~N~~G~s  346 (767)
                      +|+|+|.|..+......
T Consensus        97 SDdGtY~C~fQkge~~~  113 (221)
T PHA03376         97 SHDGNYLCRMKLGETEV  113 (221)
T ss_pred             cCCceEEEEEEcCCCce
Confidence            99999999987654333

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=81.47  E-value=1  Score=48.75  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=21.6

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||+||+|.  .+|..||++.
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~   27 (318)
T cd05570           2 VLGKGSFGKVLLAELKGTDELYAVKV   27 (318)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEE
Confidence            79999999999998  6788999876

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=81.46  E-value=3.9  Score=36.65  Aligned_cols=72  Identities=19%  Similarity=0.357  Sum_probs=46.7

Q ss_pred             eeccccccccccccccc-CCCc--EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC-ceeEeec
Q psy12044        265 EIQEGKNVSLLCKVSAI-PEAK--ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG-TFVCVAE  340 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~-P~p~--itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G-tY~CvA~  340 (767)
                      .+.+|+.++|.|.+.+. |.+.  |.|++.+..+....+...        ........+++.+. ...+|.| .|+|.|.
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~--------~~~~~~~~stlt~~-~~r~D~g~~~sC~A~   82 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN--------TKSPVNAPATITIT-VDREDHGANFSCETE   82 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc--------cCCCceeEEEEEEe-cchhhCCcEEEEEEE
Confidence            45789999999999774 5555  799998877754332210        01112234555554 4566766 6999998


Q ss_pred             cCCCC
Q psy12044        341 NQAGS  345 (767)
Q Consensus       341 N~~G~  345 (767)
                      +..+.
T Consensus        83 l~l~~   87 (100)
T cd05755          83 LDLRP   87 (100)
T ss_pred             eccCc
Confidence            87654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=81.43  E-value=0.98  Score=49.04  Aligned_cols=23  Identities=17%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             cccCCCCcceEEe--eCCceEEEec
Q psy12044        451 IADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       451 IG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ||+|+||.||+|.  .+|..||++.
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~   25 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKV   25 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEE
Confidence            7999999999998  7899999886

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0591|consensus

Probab=81.42  E-value=0.62  Score=49.03  Aligned_cols=124  Identities=19%  Similarity=0.234  Sum_probs=65.9

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec-----cccC----------------CCcchhhhhhhCCCCcccchhhccccccC
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN-----MNTY----------------PSYSISYQIEQNPDLVNDAESVDKDRRAQ  506 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~-----~~~~----------------~~~~~~~~~e~npdlin~~e~~~~~~~~~  506 (767)
                      .||.|+||.|||+.  .||..||-+.     +|+-                .|.-.+++   +-+||-|+|++.=.---.
T Consensus        26 ~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy---~~~f~~~~evlnivmE~c  102 (375)
T KOG0591|consen   26 KIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYY---AHSFIEDNEVLNIVMELC  102 (375)
T ss_pred             HHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHH---HHhhhccchhhHHHHHhh
Confidence            79999999999999  9999999877     2211                22222222   235667777666555544


Q ss_pred             CCCCcch---hhcccc--cccccccccCCccccccccccccCCCccccccccCccCCCcccccCCccccCCCCcc--ccC
Q psy12044        507 GGEDTQD---TQDKAS--EAASVQYSDSGSQCQEWGNVCYNRMQPMQHIVLNNVYNQPADIHLTPEKFMDRDGYP--VDF  579 (767)
Q Consensus       507 ~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  579 (767)
                      +++|-.-   +|++..  -+.+.-|--=---|.-+. .||.      .+|||.+-  ..||.+- --|+|..|--  =||
T Consensus       103 ~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~-~cH~------~~~r~~Vm--HRDIKPa-NIFl~~~gvvKLGDf  172 (375)
T KOG0591|consen  103 DAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALY-HCHS------KIPRGTVM--HRDIKPA-NIFLTANGVVKLGDF  172 (375)
T ss_pred             cccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHH-HHhc------ccccccee--eccCcch-heEEcCCCceeeccc
Confidence            4444432   444331  111222211000011111 1222      34554432  2565443 2699999932  389


Q ss_pred             CCCCCCC
Q psy12044        580 GLPKVPT  586 (767)
Q Consensus       580 ~~~~~~~  586 (767)
                      ||.+.=.
T Consensus       173 GL~r~l~  179 (375)
T KOG0591|consen  173 GLGRFLS  179 (375)
T ss_pred             hhHhHhc
Confidence            9998754

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=81.40  E-value=0.91  Score=47.75  Aligned_cols=40  Identities=10%  Similarity=0.078  Sum_probs=33.0

Q ss_pred             cHHHHHhcccCCCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        432 TSVNATSATCMDKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       432 s~~El~~AT~~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++.++..+.  +.|.-...||.|+||.||+|.  .+|..||.+.
T Consensus         7 ~~~~~~~~~--~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~   48 (282)
T cd06636           7 DLSALRDPA--GIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKV   48 (282)
T ss_pred             hhhhhcChh--hhhhhheeeccCCCeEEEEEEEcCCCcEEEEEE
Confidence            456666666  677777799999999999999  7889999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=81.25  E-value=0.89  Score=49.52  Aligned_cols=29  Identities=14%  Similarity=0.077  Sum_probs=24.6

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |.-...||+|+||.||++.  .+|+.||+|.
T Consensus         3 y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~   33 (331)
T cd05597           3 FEILKVIGRGAFGEVAVVKMKNTGQVYAMKI   33 (331)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEE
Confidence            4444589999999999999  7899999877

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=81.23  E-value=1.1  Score=42.43  Aligned_cols=36  Identities=14%  Similarity=0.348  Sum_probs=30.7

Q ss_pred             EEEEeeeccCCCCceeEeeccCCCCcccceEEEEEe
Q psy12044        321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       321 ~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      .|.|.+++..|.|.|.|.+.+..|.....+.+.+..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~   37 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE   37 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec
Confidence            588999999999999999998888877777776654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=81.20  E-value=0.96  Score=47.99  Aligned_cols=29  Identities=10%  Similarity=0.117  Sum_probs=24.7

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |....+||+|+||.||++.  .+|+.||++.
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~   32 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKK   32 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEE
Confidence            4445689999999999999  7899999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG1006|consensus

Probab=81.06  E-value=0.64  Score=48.58  Aligned_cols=24  Identities=25%  Similarity=0.221  Sum_probs=23.0

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .||.|.||+|+|-.  +.|++.|+++
T Consensus        71 ~iG~G~fG~V~KM~hk~sg~~mAVKr   96 (361)
T KOG1006|consen   71 EIGNGAFGTVNKMLHKPSGKLMAVKR   96 (361)
T ss_pred             HhcCCcchhhhhhhcCccCcEEEEEE
Confidence            79999999999998  9999999988

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=81.04  E-value=0.93  Score=47.79  Aligned_cols=27  Identities=26%  Similarity=0.158  Sum_probs=23.5

Q ss_pred             CCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        447 GGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       447 ~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      -...||+|+||.||+|.  .+|+.||++.
T Consensus         4 ~~~~lg~g~~g~v~~~~~~~~~~~~aiK~   32 (288)
T cd07863           4 PVAEIGVGAYGTVYKARDPHSGHFVALKS   32 (288)
T ss_pred             EeeEEeecCCeEEEEEEECCCCcEEEEEE
Confidence            34579999999999998  7899999886

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=80.96  E-value=1  Score=48.45  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.9

Q ss_pred             cccCCCCcceEEe--eCCceEEEec
Q psy12044        451 IADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       451 IG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ||+|+||.||+|.  .+|..||++.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~   25 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKT   25 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEE
Confidence            7999999999999  6788999876

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=80.92  E-value=0.9  Score=50.07  Aligned_cols=30  Identities=17%  Similarity=0.170  Sum_probs=25.8

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.....||+|+||.||++.  .+|..||++.
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~   33 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKI   33 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEE
Confidence            45566789999999999998  7899999876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=80.86  E-value=1.1  Score=48.84  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=22.0

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||.||+|.  .+|..||+|.
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~   27 (329)
T cd05588           2 VIGRGSYAKVLLVELKKTRRIYAMKV   27 (329)
T ss_pred             eEeeCCCeEEEEEEECCCCCEEEEEE
Confidence            79999999999998  7899999876

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=80.77  E-value=1.1  Score=48.84  Aligned_cols=25  Identities=16%  Similarity=0.212  Sum_probs=22.5

Q ss_pred             CccccCCCCcceEEe--eCCceEEEec
Q psy12044        449 YIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++||+|+||.||++.  .+|..||++.
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~   27 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKI   27 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEE
Confidence            379999999999998  7899999876

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=80.76  E-value=7.4  Score=35.51  Aligned_cols=70  Identities=16%  Similarity=0.338  Sum_probs=42.2

Q ss_pred             cccccccccccccccCC--CcEEEeecCeeccCCCcccccccceeeccc-CcceeeeEEEEeeeccCCC-CceeEeeccC
Q psy12044        267 QEGKNVSLLCKVSAIPE--AKITWLFDGVPIQNESMSASESHAVYSTEE-GTEIKKSELLIYNSNIDDN-GTFVCVAENQ  342 (767)
Q Consensus       267 ~~G~~vsL~C~a~g~P~--p~itW~~~g~~l~~~s~~~~~~~~~~~~~~-g~~~~~s~L~I~nvs~sD~-GtY~CvA~N~  342 (767)
                      ..|+.++|.|.+.++..  ..++|.+++..+......      .....+ +.....+.|.+.. ...|. ..|+|.+...
T Consensus        19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~------~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~   91 (111)
T cd05772          19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPN------ITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHR   91 (111)
T ss_pred             CCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccc------eeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeC
Confidence            45777899999988644  488999999887532111      111112 2334455555553 33343 4599999765


Q ss_pred             C
Q psy12044        343 A  343 (767)
Q Consensus       343 ~  343 (767)
                      .
T Consensus        92 ~   92 (111)
T cd05772          92 T   92 (111)
T ss_pred             C
Confidence            4

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=80.74  E-value=1.1  Score=47.38  Aligned_cols=24  Identities=25%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||.||++.  .+|+.||++.
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~   26 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKC   26 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEE
Confidence            58999999999999  6799999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=80.64  E-value=1.1  Score=47.23  Aligned_cols=23  Identities=13%  Similarity=0.225  Sum_probs=21.0

Q ss_pred             cccCCCCcceEEe--eCCceEEEec
Q psy12044        451 IADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       451 IG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ||+|+||.||++.  .+|..+|.+.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~   25 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKK   25 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEE
Confidence            7999999999998  7899999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=80.59  E-value=0.8  Score=48.14  Aligned_cols=53  Identities=11%  Similarity=0.070  Sum_probs=34.3

Q ss_pred             CCCccccCCCCcceEEe--eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        447 GGYIIADGHNDMMLYAT--DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       447 ~~nlIG~GgfG~VYKG~--~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      -...||+|++|.||||.  .+|..||++....-.   .  -.+...+++||++.+.+.+.
T Consensus         3 ~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~---~--~~~~~~~~~~E~~~l~~l~~   57 (283)
T cd07835           3 KVEKIGEGTYGVVYKARDKLTGEIVALKKIRLET---E--DEGVPSTAIREISLLKELNH   57 (283)
T ss_pred             hheEecCCCCeEEEEEEEcCCCCEEEEEEeeccc---c--cccchhHHHHHHHHHHhcCC
Confidence            34579999999999998  789999988721110   0  01223456667766665543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=80.57  E-value=1.1  Score=46.30  Aligned_cols=58  Identities=12%  Similarity=0.163  Sum_probs=37.6

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      ++|.-...||+|+||.||+|+  .+|..||++....+   .+.. .++..++.+|++...+...
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~---~~~~-~~~~~~~~~ei~~l~~~~~   61 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIF---EMMD-AKARQDCLKEIDLLKQLDH   61 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecc---cccc-hhhHHHHHHHHHHHHhCCC
Confidence            566677789999999999999  58999998762211   0000 1123346677766665543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=80.57  E-value=1.3  Score=48.30  Aligned_cols=31  Identities=13%  Similarity=0.028  Sum_probs=26.4

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +.|.-...||+|+||.||+|.  .+|..||++.
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~   47 (343)
T cd07878          15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKK   47 (343)
T ss_pred             hhhhhheecccCCCeEEEEEEECCCCCEEEEEE
Confidence            456666789999999999998  7888999886

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=80.49  E-value=0.76  Score=51.11  Aligned_cols=37  Identities=8%  Similarity=0.013  Sum_probs=30.1

Q ss_pred             HHHhcccCCCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        435 NATSATCMDKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       435 El~~AT~~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++..+.  ++|.-...||+|+||.||++.  .+|..||++.
T Consensus        37 ~~~~~~--~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~   75 (371)
T cd05622          37 DLRMKA--EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKL   75 (371)
T ss_pred             hcCcch--hhcEEEEEEeecCCeEEEEEEECCCCcEEEEEE
Confidence            344444  677777899999999999999  7888999876

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=80.42  E-value=0.98  Score=49.15  Aligned_cols=30  Identities=10%  Similarity=0.015  Sum_probs=24.7

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||.||++.  .++..+|++.
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~   33 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKI   33 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEE
Confidence            44555689999999999999  6788888876

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=80.28  E-value=1  Score=48.07  Aligned_cols=31  Identities=19%  Similarity=0.154  Sum_probs=26.7

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++|.-...||+|+||.||+|.  .+|..||++.
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~   37 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKV   37 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEE
Confidence            456666789999999999999  6899999877

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=80.18  E-value=1.4  Score=45.31  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=24.0

Q ss_pred             CCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        446 NGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       446 s~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .....||+|+||+||+|+  .+|..||.+.
T Consensus         3 ~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~   32 (258)
T cd06632           3 RKGELLGSGSFGSVYEGLNLDDGDFFAVKE   32 (258)
T ss_pred             cccceeeecCCceEEEEEEcCCCcEEEEEE
Confidence            344589999999999999  5899999886

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=80.18  E-value=1.2  Score=45.99  Aligned_cols=31  Identities=19%  Similarity=0.206  Sum_probs=26.0

Q ss_pred             CCCCCCCccccCCCCcceEEeeCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYATDSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~~dG~~VA~~~  473 (767)
                      ++|.-...||.|+||.||+|...|..||++.
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~~~~~v~iK~   36 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDYRGQKVAVKC   36 (256)
T ss_pred             hhccceeeeecCCCceEEEEEecCcEEEEEE
Confidence            4566667899999999999996688899877

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=80.14  E-value=1.1  Score=46.61  Aligned_cols=30  Identities=17%  Similarity=0.062  Sum_probs=25.7

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||.||+|+  .+|..||++.
T Consensus        10 ~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~   41 (267)
T cd06646          10 DYELIQRVGSGTYGDVYKARNLHTGELAAVKI   41 (267)
T ss_pred             hcchhheeecCCCeEEEEEEECCCCeEEEEEE
Confidence            45556689999999999999  7899999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=80.08  E-value=0.96  Score=49.16  Aligned_cols=29  Identities=21%  Similarity=0.233  Sum_probs=24.5

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |.-...||+|+||.||+|+  .+|..||++.
T Consensus         3 y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~   33 (333)
T cd05600           3 FQILTQVGQGGYGQVFLAKKKDTGEIVALKR   33 (333)
T ss_pred             cEEEEEEeecCCeEEEEEEECCCCCEEEEEE
Confidence            4445589999999999999  6799999876

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	767
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		6e-25
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		6e-23
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-21
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-18
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-18
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-17
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		2e-17
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-16
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-16
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		8e-16
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		6e-13
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		9e-16
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		1e-15
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-15
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		5e-14
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		5e-13
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		9e-13
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		9e-13
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		1e-11
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-11
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-11
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		7e-11
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-11
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		7e-11
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		7e-11
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		8e-11
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		9e-11
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		1e-10
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-10
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		1e-10
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		1e-10
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		3e-10
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		3e-10
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		3e-10
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		9e-05
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		3e-10
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		4e-10
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		7e-10
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		7e-10
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		7e-10
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		8e-10
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		1e-09
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-08
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		1e-08
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-08
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		1e-04
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		3e-08
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		4e-08
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		4e-08
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		5e-08
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		5e-08
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		2e-07
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		2e-07
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		2e-07
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		2e-07
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		2e-07
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		5e-07
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		9e-06
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		6e-07
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		4e-06
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		4e-06
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		5e-06
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		5e-06
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		6e-06
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		7e-06
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		7e-06
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		8e-06
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		8e-06
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		1e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		1e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-04
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		1e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-04
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		2e-05
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		2e-05
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		2e-05
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		2e-05
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		8e-05
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		1e-04
3rfe_A	130	Crystal Structure Of Glycoprotein Gpib Ectodomain L		4e-04
2r15_A	212	Crystal Structure Of The Myomesin Domains 12 And 13		4e-04
3sb4_A	329	Crystal Structure Of A Hypothetical Leucine Rich Re		5e-04
3rez_A	129	Glycoprotein Gpib Variant Length = 129		6e-04

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 163/409 (39%), Gaps = 84/409 (20%)
Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM----- 72
           CP+ C C  +  K  V CV K+L  V +G+  NT++L+   N ++ +    F+ +     
Sbjct: 35  CPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEI 92
Query: 73  -----------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP 115
                            GL NL  + L   R++ I + AF  L+ L +L   +N ++++P
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152
Query: 116 SDTFPDYPSLMKLTL--------------------------------------------- 130
           S  F   PSL +L L                                             
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212
Query: 131 --SGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188
             SGN +  I+ G+FQ L +L  L + +  I+VIE  AF  L SL  + L +N +T +  
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272
Query: 189 SNILPT-GLHGIDLHHNPWTCDCLLIGLRRWLESTK-TPMAIDPICSVPPRLSSVTIKQL 246
               P   L  I LHHNPW C+C ++ L  W++    +  A    C+ PP L    I +L
Sbjct: 273 DLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGEL 332
Query: 247 SIDELAC-EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASES 305
             +   C  P I      L + EG    L C+ S      ++W+     +         +
Sbjct: 333 DQNYFTCYAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVM--------T 383
Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           H  Y       +    L   N  + D G + C+  N  G+T+++ T+ +
Sbjct: 384 HGAYKVRIAV-LSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score =  106 bits (264), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 163/409 (39%), Gaps = 85/409 (20%)
Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM----- 72
           CP+ C C  +  K  V C  + L  V +G+  NT+ L+   NN++ +  + F+ +     
Sbjct: 46  CPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEV 103
Query: 73  -----------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP 115
                            GL +L  + L    ++VI S AF  L+ L +L   +N ++++P
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163
Query: 116 SDTFPDYPSLMKLTL--------------------------------------------- 130
           S  F   PSLM+L L                                             
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223
Query: 131 --SGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG 188
             SGN   +I+ G+F  LS L  L +    + +IE  AF GL SL  L L +N ++++  
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283
Query: 189 SNILPTG-LHGIDLHHNPWTCDCLLIGLRRWL-ESTKTPMAIDPICSVPPRLSSVTIKQL 246
               P   L  + LHHNPW CDC ++ L  WL E   T       C  P  +    + ++
Sbjct: 284 DLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEV 343
Query: 247 SIDELACE-PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASES 305
                 C  P I  +   L I EG+   L C+    P + + WL     +    +S +  
Sbjct: 344 DQASFQCSAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTV----LSHASR 397
Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           H   S      +  S +L     + D G + C+  N AG+++++  + +
Sbjct: 398 HPRISVLNDGTLNFSHVL-----LSDTGVYTCMVTNVAGNSNASAYLNV 441

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 159/414 (38%), Gaps = 84/414 (20%)
Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM--- 72
           ++CP +C C  +  +  V C  + L  V   +  NT+ L+   N+++ +  + F+ +   
Sbjct: 4   TSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHL 61
Query: 73  -------------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT 113
                              GL +L  + L   R++ + ++AF  L+ L +L   +N +++
Sbjct: 62  EILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 114 VPSDTFPDYPSLMKL--------------------------------------------- 128
           +PS  F   PSL +L                                             
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLE 181
Query: 129 --TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
              LSGN +  I+ G+FQ L+ L  L L    +  IE  AF  L SLE L L +N + ++
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Query: 187 SGSNILPT-GLHGIDLHHNPWTCDCLLIGLRRWL-ESTKTPMAIDPICSVPPRLSSVTIK 244
                 P   L  + L+HNPW C+C ++ L  WL E+  +       C  P  L    I 
Sbjct: 242 PHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIG 301
Query: 245 QLSIDELAC-EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSAS 303
           +L      C  P I      L + EG    L C+ +      + WL     +        
Sbjct: 302 ELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCR-TGTSMTSVNWLTPNGTLM------- 353
Query: 304 ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
            +H  Y       +    L   N  + D G + C+  N AG+T+++ T+ +  K
Sbjct: 354 -THGSYRVRISV-LHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGTK 405

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 96/200 (48%), Gaps = 5/200 (2%)
Query: 54  LDYTGN-NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ 112
           LD + N  L+++    F  +G   L  ++L RC +  +    FRGL  L  L    N LQ
Sbjct: 85  LDLSDNAQLRSVDPATFHGLG--RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDS 172
            +P DTF D  +L  L L GN I  +   AF+ L  L  L L +  +  +   AF  L  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 173 LEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPI 231
           L  L L  N ++ +    + P   L  + L+ NPW CDC    L  WL+  +   +  P 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP- 261
Query: 232 CSVPPRLSSVTIKQLSIDEL 251
           CS+P RL+   +K+L+ ++L
Sbjct: 262 CSLPQRLAGRDLKRLAANDL 281

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 96/200 (48%), Gaps = 5/200 (2%)
Query: 54  LDYTGN-NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ 112
           LD + N  L+++    F  +G   L  ++L RC +  +    FRGL  L  L    N LQ
Sbjct: 84  LDLSDNAQLRSVDPATFHGLG--RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 141
Query: 113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDS 172
            +P DTF D  +L  L L GN I  +   AF+ L  L  L L +  +  +   AF  L  
Sbjct: 142 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 201
Query: 173 LEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPI 231
           L  L L  N ++ +    + P   L  + L+ NPW CDC    L  WL+  +   +  P 
Sbjct: 202 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP- 260
Query: 232 CSVPPRLSSVTIKQLSIDEL 251
           CS+P RL+   +K+L+ ++L
Sbjct: 261 CSLPQRLAGRDLKRLAANDL 280

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 113/282 (40%), Gaps = 50/282 (17%)
Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM----- 72
           CP +C+C +   K T  C  + L  V  G+  ++Q +   GN +  +    FQ       
Sbjct: 1   CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTI 59
Query: 73  ------------------------------------------GLVNLQKIYLSRCRISVI 90
                                                     GL +L  ++L RC +  +
Sbjct: 60  LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL 119
Query: 91  DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV 150
               FRGL  L  L    N LQ +P +TF D  +L  L L GN I  +   AF+ L  L 
Sbjct: 120 GPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLD 179
Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCD 209
            L L +  +  +   AF  L  L  L L  N ++ +    ++P   L  + L+ NPW CD
Sbjct: 180 RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCD 239
Query: 210 CLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDEL 251
           C    L  WL+  +   +  P C++P RL+   +K+L+  +L
Sbjct: 240 CRARPLWAWLQKFRGSSSEVP-CNLPQRLAGRDLKRLAASDL 280

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 156/361 (43%), Gaps = 41/361 (11%)
Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
           V +CP +C+C        + C  + L  V + +   T +LD + NNL  L  E +    L
Sbjct: 9   VVSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRL 63
Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
            NL  + LS   ++ I S+AF  + NL  LD S N L T+    F D  +L  L L  N 
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
Query: 135 IKQIKTGAFQPLS-----YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189
           I  +   AF+ ++     YL   ++S+  +E+I+D     L  L  L L +NK+  +  +
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN--KLPKLMLLDLSSNKLKKLPLT 181
Query: 190 NI--LPTGL-HGIDLHHNPWTCDCLLIGL-RRWLE---STKTPMAIDPICSVPPRLSSVT 242
           ++  LP  + +G+ LH+NP  CDC L  L   W     S+      D  C    +L ++ 
Sbjct: 182 DLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNI- 240
Query: 243 IKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA 302
               S+D   C  +   S +  E   G  +++ C        K+ W    V   NE + +
Sbjct: 241 ---FSLDFFNCS-EYKESAW--EAHLGDTLTIRCDTKQQGMTKV-W----VSPSNEQVLS 289
Query: 303 SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVE 362
             S+   S   G      +L      ++D G + C A  +    + N T+ + LK  N  
Sbjct: 290 QGSNGSVSVRNG------DLFFKKVQVEDGGVYTCYAMGE----TFNETLSVELKVYNFT 339
Query: 363 V 363
           +
Sbjct: 340 L 340

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 4/207 (1%)
Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
           +  C T   C    GK+ V+C  KSL +V  G+  +T+ LD     L TL +  F+  GL
Sbjct: 1   MKTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GL 58
Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
             L  + L   ++  + +  F  LT L  L  ++N L ++P   F     L KL L GN 
Sbjct: 59  TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
           +K + +G F  L+ L  L L+   ++ I   AF  L +L+ L L  N++ ++        
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 195 G-LHGIDLHHNPWTCD-CLLIGLRRWL 219
           G L  I L  N + C  C ++ L +W+
Sbjct: 179 GKLQTITLFGNQFDCSRCEILYLSQWI 205

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 4/207 (1%)
Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
           +  C T   C    GK+ V+C  KSL +V  G+  +T+ LD     L TL +  F+  GL
Sbjct: 1   MKTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GL 58
Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
             L  + L   ++  + +  F  LT L  L  ++N L ++P   F     L KL L GN 
Sbjct: 59  TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
           +K + +G F  L+ L  L L+   ++ I   AF  L +L+ L L  N++ ++        
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 195 G-LHGIDLHHNPWTCD-CLLIGLRRWL 219
           G L  I L  N + C  C  + L +W+
Sbjct: 179 GKLQTITLFGNQFDCSRCETLYLSQWI 205

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 6/184 (3%)
Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
           + CP  C C  +   + V C  K  + V EG+   T++LD   N +KTL+ ++F      
Sbjct: 1   TGCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFP-- 56
Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
           +L+++ L+   +S ++  AF  L NL  L    N L+ +P   F    +L KL +S N I
Sbjct: 57  HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
             +    FQ L  L +LE+    +  I   AF GL+SLE L L+   +T+I    +  + 
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SH 174
Query: 196 LHGI 199
           LHG+
Sbjct: 175 LHGL 178

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 112/291 (38%), Gaps = 64/291 (21%)
Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
           +NL  + ++ C ++ +   A R L  L  L+ S+N + T+      +   L ++ L G  
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
           +  ++  AF+ L+YL  L +S   +  +E++ F  + +LE L LD+              
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS-------------- 329
Query: 195 GLHGIDLHHNPWTCDCLLIGL--RRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELA 252
                    NP  CDC L+ +  RRW  +        P C+ P  +     K        
Sbjct: 330 ---------NPLACDCRLLWVFRRRWRLNFNRQ---QPTCATPEFVQGKEFKDF------ 371
Query: 253 CEPQITPSTFY--------------LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
             P +    ++              + + EG  V  +C+    P   I WL         
Sbjct: 372 --PDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWL--------- 420
Query: 299 SMSASESHAVYSTEEG--TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
              +   H V +   G  T      L +  + + DNGT++C+A N  G+ S
Sbjct: 421 ---SPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDS 468

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 121/309 (39%), Gaps = 73/309 (23%)
Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM--- 72
           ++CP +C C  +  +  V C  + L  V   +  NT+ L+   N+++ +  + F+ +   
Sbjct: 4   TSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHL 61
Query: 73  -------------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT 113
                              GL +L  + L   R++ + ++AF  L+ L +L   +N +++
Sbjct: 62  EILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 114 VPSDTFPDYPSLMKL--------------------------------------------- 128
           +PS  F   PSL +L                                             
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLE 181
Query: 129 --TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
              LSGN +  I+ G+FQ L+ L  L L    +  IE  AF  L SLE L L +N + ++
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Query: 187 SGSNILPT-GLHGIDLHHNPWTCDCLLIGLRRWL-ESTKTPMAIDPICSVPPRLSSVTIK 244
                 P   L  + L+HNPW C+C ++ L  WL E+  +       C  P  L    I 
Sbjct: 242 PHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIG 301
Query: 245 QLSIDELAC 253
           +L      C
Sbjct: 302 ELDQSHFTC 310

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 29/193 (15%)
Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
           CP+ C C       TVEC ++   +V  G+   T  LD   N+LK+L N  F +  L +L
Sbjct: 1   CPSRCSCS----GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDE--LTSL 54
Query: 78  QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
            ++YL   ++  + +  F  LT+L  L+ S N LQ++P+  F     L +L L+ N ++ 
Sbjct: 55  TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLH 197
           +  G F  L+ L  L L +  ++ + D  F  L SL++                      
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY---------------------- 152
Query: 198 GIDLHHNPWTCDC 210
            I LH NPW C C
Sbjct: 153 -IWLHDNPWDCTC 164

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 24/222 (10%)
Query: 23  ICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMG--------- 73
           +C     K +V+C +K L  +   +  +T+ LD   N L +L ++ F ++          
Sbjct: 11  VCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND 70
Query: 74  -------------LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFP 120
                        L NL+ ++++  ++  +    F  L NL +L    N L+++P   F 
Sbjct: 71  NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130
Query: 121 DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN 180
               L  L+L  N ++ +  G F  L+ L  L L    ++ + + AF  L  L+ LKLDN
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 181 NKITTI-SGSNILPTGLHGIDLHHNPWTCDC-LLIGLRRWLE 220
           N++  +  G+      L  + L  NPW C C  +I + +WL+
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 31/239 (12%)
Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
           ACP  C C+      TV+C N+ L  + E +   T  L    N    L            
Sbjct: 4   ACPEKCRCE----GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLE----------- 48
Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
                          +  F+ L  L  ++FS+N +  +    F     + ++ L+ N ++
Sbjct: 49  --------------ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-GSNILPTG 195
            ++   F+ L  L TL L    I  + + +F+GL S+  L L +N+ITT++ G+      
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE 254
           L  ++L  NP+ C+C L  L  WL   +     +P C  P  L  + I+ ++I +  C+
Sbjct: 155 LSTLNLLANPFNCNCYLAWLGEWLRKKRIVTG-NPRCQKPYFLKEIPIQDVAIQDFTCD 212

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 2/162 (1%)
Query: 60  NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTF 119
           N K   N  F+ +    ++   LS+ +I  +    F   T+L  L  + N +  +  + F
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319
Query: 120 PDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLD 179
                L+KL LS N +  I +  F+ L  L  L+LS   I  + D +F+GL +L+ L LD
Sbjct: 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 180 NNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LRRWL 219
            N++ ++  G     T L  I LH NPW C C  I  L RWL
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 16/192 (8%)
Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
           + CP  C C  +     V+C +  L  V + + P+T +LD   N++  L  + F+  GL 
Sbjct: 25  AMCPFGCHCHLR----VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK--GLQ 78
Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYP-SLMKLTLSGNP 134
           +L  + L   +IS I  KAF  L  L  L  S N L  +P    P+ P SL++L +  N 
Sbjct: 79  HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP----PNLPSSLVELRIHDNR 134
Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIE--VIEDAAFVGLDSLEWLKLDNNKITTISGSNIL 192
           I+++  G F  L  +  +E+    +E    E  AF GL  L +L++   K+T I     L
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD--L 191
Query: 193 PTGLHGIDLHHN 204
           P  L+ + L HN
Sbjct: 192 PETLNELHLDHN 203

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 50  NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109
           N   L  TGN L++L N  F K  L NL+++ L   ++  +    F  LTNL  L+ +HN
Sbjct: 86  NLTYLILTGNQLQSLPNGVFDK--LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVG 169
            LQ++P   F    +L +L LS N ++ +  G F  L+ L  L L +  ++ + D  F  
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
Query: 170 LDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDC 210
           L SL++                       I LH NPW C C
Sbjct: 204 LTSLQY-----------------------IWLHDNPWDCTC 221

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 13/193 (6%)
Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
            CP  C C  +     V+C +  L  V + + P+T +LD   N +  + +  F+   L N
Sbjct: 24  VCPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN--LKN 77
Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
           L  + L   +IS I   AF  L  L  L  S N L+ +P +  P   +L +L +  N I 
Sbjct: 78  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP-EKMPK--TLQELRVHENEIT 134
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEV--IEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
           +++   F  L+ ++ +EL    ++   IE+ AF G+  L ++++ +  ITTI     LP 
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPP 192
Query: 195 GLHGIDLHHNPWT 207
            L  + L  N  T
Sbjct: 193 SLTELHLDGNKIT 205

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 13/193 (6%)
Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
            CP  C C  +     V+C +  L  V + + P+T +LD   N +  + +  F+   L N
Sbjct: 24  VCPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN--LKN 77
Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
           L  + L   +IS I   AF  L  L  L  S N L+ +P +  P   +L +L +  N I 
Sbjct: 78  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP-EKMPK--TLQELRVHENEIT 134
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEV--IEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
           +++   F  L+ ++ +EL    ++   IE+ AF G+  L ++++ +  ITTI     LP 
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPP 192
Query: 195 GLHGIDLHHNPWT 207
            L  + L  N  T
Sbjct: 193 SLTELHLDGNKIT 205

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 31/205 (15%)
Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
           +ACP+ C C       TV+C +K   +V  G+  N Q+L    N +  L    F    L+
Sbjct: 11  AACPSQCSCS----GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDS--LI 64
Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
           NL+++YL   ++  +    F  LT L  LD   N L  +PS  F     L +L +  N +
Sbjct: 65  NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
            ++  G  + L++L  L L +  ++ I   AF  L SL                      
Sbjct: 125 TELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLT--------------------- 162
Query: 196 LHGIDLHHNPWTCDCL-LIGLRRWL 219
            H   L  NPW C+C  ++ LR W+
Sbjct: 163 -HAY-LFGNPWDCECRDIMYLRNWV 185

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 33  VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
           V C  ++L  +   +  +T +L  + N L T        M    L ++ L RC ++ +  
Sbjct: 16  VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 73
Query: 93  KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
                L  L  LD SHN LQ++P    T P                         L +L 
Sbjct: 74  DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 131
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
           L GN +K +  G   P   L  L L+   +  +      GL++L+ L L  N + TI   
Sbjct: 132 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 191
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
             GS++LP       LH NPW C+C ++  RRWL+
Sbjct: 192 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 222

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 26/171 (15%)
Query: 50  NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109
           N   L  TGN L++L N  F K  L NL+++ L   ++  +    F  LTNL  L   HN
Sbjct: 86  NLTYLILTGNQLQSLPNGVFDK--LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVG 169
            LQ++P   F    +L +L L  N ++ +  G F  L+ L  L L+   ++ + D  F  
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR 203
Query: 170 LDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCL-LIGLRRWL 219
           L                       T L  I L +NPW C C  ++ L RW+
Sbjct: 204 L-----------------------TSLTHIWLLNNPWDCACSDILYLSRWI 231

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33  VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
           V C  + L  +   +  +T +L  + N L T        M    L ++ L RC ++ +  
Sbjct: 15  VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93  KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
                L  L  LD SHN LQ++P    T P                         L +L 
Sbjct: 73  DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
           L GN +K +  G   P   L  L L+   +  +      GL++L+ L L  N + TI   
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
             GS++LP       LH NPW C+C ++  RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33  VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
           V C  + L  +   +  +T +L  + N L T        M    L ++ L RC ++ +  
Sbjct: 15  VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93  KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
                L  L  LD SHN LQ++P    T P                         L +L 
Sbjct: 73  DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
           L GN +K +  G   P   L  L L+   +  +      GL++L+ L L  N + TI   
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
             GS++LP       LH NPW C+C ++  RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33  VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
           V C  + L  +   +  +T +L  + N L T        M    L ++ L RC ++ +  
Sbjct: 15  VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93  KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
                L  L  LD SHN LQ++P    T P                         L +L 
Sbjct: 73  DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
           L GN +K +  G   P   L  L L+   +  +      GL++L+ L L  N + TI   
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
             GS++LP       LH NPW C+C ++  RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33  VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
           V C  + L  +   +  +T +L  + N L T        M    L ++ L RC ++ +  
Sbjct: 15  VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93  KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
                L  L  LD SHN LQ++P    T P                         L +L 
Sbjct: 73  DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
           L GN +K +  G   P   L  L L+   +  +      GL++L+ L L  N + TI   
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
             GS++LP       LH NPW C+C ++  RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33  VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
           V C  + L  +   +  +T +L  + N L T        M    L ++ L RC ++ +  
Sbjct: 15  VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93  KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
                L  L  LD SHN LQ++P    T P                         L +L 
Sbjct: 73  DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
           L GN +K +  G   P   L  L L+   +  +      GL++L+ L L  N + TI   
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
             GS++LP       LH NPW C+C ++  RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 83  SRCRISVIDSKA-FRGLTNL--------VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
           SRC  S  + +   +GLT++          L+   N LQ++P   F     L KL+LS N
Sbjct: 3   SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN 62
Query: 134 PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNIL 192
            I+ +  G F  L+ L  L L +  ++ + +  F  L  L+ L LD N++ ++  G    
Sbjct: 63  QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122
Query: 193 PTGLHGIDLHHNPWTCDCLLIG-LRRWL 219
            T L  I LH NPW C C  I  L RWL
Sbjct: 123 LTSLQKIWLHTNPWDCSCPRIDYLSRWL 150

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 33  VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
           V C  + L  +   +  +T +L  + N L T        M    L ++ L RC ++ +  
Sbjct: 15  VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRCELTKLQV 72
Query: 93  KAFRGLTNLVDLDFSHNVLQTVP--SDTFP---------------------DYPSLMKLT 129
                L  L  LD SHN LQ++P    T P                         L +L 
Sbjct: 73  DG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-- 187
           L GN +K +  G   P   L  L L+   +  +      GL++L+ L L  N + TI   
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 188 --GSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLE 220
             GS++LP       LH NPW C+C ++  RRWL+
Sbjct: 191 FFGSHLLPFAF----LHGNPWLCNCEILYFRRWLQ 221

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 12/185 (6%)
Query: 82  LSRCRISVIDSKAFRGLTNL--------VDLDFSHNVLQTVPSD-TFPDYPSLMKLTLSG 132
           +  C  + +D    RGL  +         +L  + N L  + SD  F   P L+KL L  
Sbjct: 5   MCHCEGTTVDCTG-RGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR 63
Query: 133 NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNI 191
           N +  I+  AF+  S++  L+L +  I+ I +  F+GL  L+ L L +N+I+ +  GS  
Sbjct: 64  NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123
Query: 192 LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDEL 251
               L  ++L  NP+ C+C L     WL   K+       C  P ++  V IK L   E 
Sbjct: 124 HLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKDLPHSEF 182
Query: 252 ACEPQ 256
            C  +
Sbjct: 183 KCSSE 187

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 98  LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC 157
           L  L  LD S N L ++P         L +L L GN +K +  G   P   L  L L+  
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTIS----GSNILPTGLHGIDLHHNPWTCDCLLI 213
            +  +      GL++L+ L L  N + TI     GS++LP       LH NPW C+C ++
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----LHGNPWLCNCEIL 214
Query: 214 GLRRWLE 220
             RRWL+
Sbjct: 215 YFRRWLQ 221

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 98  LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC 157
           L  L  LD S N L ++P         L +L L GN +K +  G   P   L  L L+  
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTIS----GSNILPTGLHGIDLHHNPWTCDCLLI 213
            +  +      GL++L+ L L  N + TI     GS++LP       LH NPW C+C ++
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----LHGNPWLCNCEIL 214
Query: 214 GLRRWLE 220
             RRWL+
Sbjct: 215 YFRRWLQ 221

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNL----KTLHNEKFQK 71
           S CPT C C        V C NK L  + +G+  +   L   GN      K L N K   
Sbjct: 2   SRCPTECTCL----DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYK--- 54
Query: 72  MGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS 131
               +L  I LS  RIS + +++F  +T L+ L  S+N L+ +P  TF    SL  L+L 
Sbjct: 55  ----HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110
Query: 132 GNPIKQIKTGAFQPLSYLVTLEL 154
           GN I  +  GAF  LS L  L +
Sbjct: 111 GNDISVVPEGAFNDLSALSHLAI 133

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGI 159
           ++ +L    N    VP +   +Y  L  + LS N I  +   +F  ++ L+TL LS   +
Sbjct: 32  DVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIGLRRW 218
             I    F GL SL  L L  N I+ +  G+    + L  + +  NP  CDC +  L  W
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDW 150
Query: 219 LES 221
           ++S
Sbjct: 151 VKS 153

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 98  LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC 157
           L  L  LD S N L ++P         L +L L GN +K +  G   P   L  L L+  
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTIS----GSNILPTGLHGIDLHHNPWTCDCLLI 213
            +  +      GL++L+ L L  N + TI     GS++LP       LH NPW C+C ++
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF----LHGNPWLCNCEIL 214
Query: 214 GLRRWLE 220
             RRWL+
Sbjct: 215 YFRRWLQ 221

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Query: 94  AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTL 152
            F  L NL+ LD SH   +   +  F    SL  L ++GN  ++      F  L  L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCL 211
           +LS+C +E +   AF  L SL+ L + +N++ ++  G     T L  I LH NPW C C 
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Query: 212 LIG-LRRWL 219
            I  L RWL
Sbjct: 536 RIDYLSRWL 544

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 2/178 (1%)
Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
           + +I L +  I VI   AF     L  +D S+N +  +  D F    SL  L L GN I 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TG 195
           ++    F+ L  L  L L+   I  +   AF  L +L  L L +NK+ TI+     P   
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELAC 253
           +  + L  NP+ CDC L  L  +L +     +    C+ P RL++  I Q+   +  C
Sbjct: 154 IQTMHLAQNPFICDCHLKWLADYLHTNPIETS-GARCTSPRRLANKRIGQIKSKKFRC 210

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 2/178 (1%)
Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
           + +I L +  I VI   AF     L  +D S+N +  +  D F    SL  L L GN I 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TG 195
           ++    F+ L  L  L L+   I  +   AF  L +L  L L +NK+ TI+     P   
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELAC 253
           +  + L  NP+ CDC L  L  +L +     +    C+ P RL++  I Q+   +  C
Sbjct: 154 IQTMHLAQNPFICDCHLKWLADYLHTNPIETS-GARCTSPRRLANKRIGQIKSKKFRC 210

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
           +C  + ICK   G         SL ++  G+    + LD + N +  + N   Q+   VN
Sbjct: 29  SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC--VN 77
Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
           LQ + L+   I+ I+  +F  L +L  LD S+N L  + S  F    SL  L L GNP K
Sbjct: 78  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 137 QIKTGAFQPLSYLVTLELSKCG----IEVIEDAAFVGLDSLEWLKLD 179
            +  G     S+L  L++ + G       I+   F GL  LE L++D
Sbjct: 138 TL--GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
           +C  + ICK   G         SL ++  G+    + LD + N +  + N   Q+   VN
Sbjct: 3   SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC--VN 51
Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
           LQ + L+   I+ I+  +F  L +L  LD S+N L  + S  F    SL  L L GNP K
Sbjct: 52  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 137 QIKTGAFQPLSYLVTLELSKCG----IEVIEDAAFVGLDSLEWLKLD 179
            +  G     S+L  L++ + G       I+   F GL  LE L++D
Sbjct: 112 TL--GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 156

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 107/248 (43%), Gaps = 37/248 (14%)
Query: 31  QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI 90
           +T +C N  L  +      + Q L+ + N   +L  E F++     L+ + L+  R+ V 
Sbjct: 363 ETSDCCNLQLRNL-----SHLQSLNLSYNEPLSLKTEAFKECP--QLELLDLAFTRLKVK 415
Query: 91  DSKA-FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN--PIKQI-KTGAFQPL 146
           D+++ F+ L  L  L+ SH++L       F   P+L  L L GN  P   I KT + Q L
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475
Query: 147 SYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS--------------GSN-- 190
             L  L LS C +  I+  AF  L  +  + L +N++T+ S               SN  
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHI 535
Query: 191 --ILPTGL------HGIDLHHNPWTCDCLLIGLRRWLESTKTPM--AIDPICSVPPRLSS 240
             ILP+ L        I+L  NP  C C  I    W +     +    D +C  PP L  
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRG 595
Query: 241 VTIKQLSI 248
           V +  +++
Sbjct: 596 VRLSDVTL 603

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 8   IATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNE 67
           +A I    SACP+ C C       TV+C  KSL +V  G+   TQVL    N +  L   
Sbjct: 1   MARIRARGSACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG 56
Query: 68  KFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK 127
            F +  L  L ++ L   +++V+ +  F  LT L  L  + N L+++P   F +  SL  
Sbjct: 57  VFDR--LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 114
Query: 128 LTLSGNP 134
           + L  NP
Sbjct: 115 IWLLNNP 121

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
           + CP+ C C     +  V C N  L +V  G+  + Q L    N +  L    F    LV
Sbjct: 4   AGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDH--LV 57
Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
           NLQ++Y +  +++ I +  F  LT L  LD + N L+++P   F +  SL  + L  NP
Sbjct: 58  NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 26/171 (15%)
Query: 24  CKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLS 83
           C  K G +T  C N  L  + + +   T+VL+++ N L T+ N  F +  L+NL  + L+
Sbjct: 7   CTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSR--LINLIFLDLT 64
Query: 84  RCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAF 143
           RC+I+                         V  DTF  +  L  + L+GNP+  +   + 
Sbjct: 65  RCQIN------------------------WVHEDTFQSHHQLNTIVLTGNPLIFMAETSL 100
Query: 144 QPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
               +L  L L++ GI  +E      L++LE L L +N I++I+     PT
Sbjct: 101 TGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPT 151

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 88/226 (38%), Gaps = 30/226 (13%)
Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
           Q L+ + N    L ++ F++   + L  +  +   +    S  F+ L  L  L+ SH +L
Sbjct: 378 QYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS-PFQNLHLLRVLNLSHCLL 436
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQ---IKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
            T           L  L L GN  +     KT   Q +  L  L LS C +  I+  AF 
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 169 GLDSLEWLKLDNNKITTIS--------------GSN---ILPTGL-------HGIDLHHN 204
           GL ++  L L +N +T  S               SN   I+P  L         I+L HN
Sbjct: 497 GLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Query: 205 PWTCDCLLIGLRRWLEST--KTPMAIDPICSVPPRLSSVTIKQLSI 248
           P  C C  I    W +    K   + +  C+ PP L  V +  + +
Sbjct: 557 PLDCTCSNIHFITWYKENLHKLEDSEETTCANPPSLRGVKLSDVKL 602

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
           ACP+ C C       TV+C  KSL +V  G+   TQVL    N +  L    F +  L  
Sbjct: 2   ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR--LTQ 55
Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
           L ++ L   +++V+ +  F  LT L  L  + N L+++P   F +  SL  + L  NP
Sbjct: 56  LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN 328
           G++V+L+C     PE  ++W  DG PI+NE     E H ++S +       SEL I N +
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEED-DEKH-IFSDD------SSELTIRNVD 262
Query: 329 IDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
            +D   +VC+AEN+AG   ++  +++  K
Sbjct: 263 KNDEAEYVCIAENKAGEQDASIHLKVFAK 291

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 67  EKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLM 126
           + F+++ L+NL  +     +I  ID+ AF     +  L    N ++ +P   F + P L 
Sbjct: 72  DSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126
Query: 127 KLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
            L L  N +  +  G F     L TL +S   +E IED  F    SL+ L+L +N++T +
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186
Query: 187 SGSNILPTGLHG 198
             S ++P+  H 
Sbjct: 187 DLS-LIPSLFHA 197

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Query: 65  HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPS 124
           HN      G VN++   L     ++ D+        LV++D S+N L+ +    F     
Sbjct: 214 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273
Query: 125 LMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT 184
           L +L +S N +  +     QP+  L  L+LS   +  +E       D LE L LD+N I 
Sbjct: 274 LERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIV 331
Query: 185 TISGSNILPTGLHGIDLHHNPWTCDCLLIGLR 216
           T+  S      L  + L HN W C+ L    R
Sbjct: 332 TLKLST--HHTLKNLTLSHNDWDCNSLRALFR 361

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
           ACP+ C C       TV+C  KSL +V  G+   TQVL    N +  L    F +  L  
Sbjct: 2   ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDR--LTQ 55
Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
           L ++ L   +++V+ +  F  LT L  L  + N L+++P   F +  SL  + L  NP
Sbjct: 56  LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           L +QEGK   + CKVS +P   ++W  DG P++ +S     +H +   E G       L+
Sbjct: 19  LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS-----AHKMLVRENGVH----SLI 69
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEEN 360
           I      D G + C+A N+AG  S +  + +  KE  
Sbjct: 70  IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 58/243 (23%)
Query: 32  TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
           T +C+  +   + + +  +T+ LD + N L+ L +  F       LQ + LSRC I  I+
Sbjct: 13  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 70
Query: 92  SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL--------TLSGNPIKQIKT--- 140
             A++ L++L  L  + N +Q++    F    SL KL        +L   PI  +KT   
Sbjct: 71  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKE 130
Query: 141 --------------GAFQPLSYLVTLELSKCGIE-------------------------- 160
                           F  L+ L  L+LS   I+                          
Sbjct: 131 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 190
Query: 161 --VIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LR 216
              I+  AF  +  L+ L LD N++ ++  G     T L  I LH NPW C C  I  L 
Sbjct: 191 MNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 249
Query: 217 RWL 219
           RWL
Sbjct: 250 RWL 252

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 58/243 (23%)
Query: 32  TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
           T +C+  +   + + +  +T+ LD + N L+ L +  F       LQ + LSRC I  I+
Sbjct: 13  TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 70
Query: 92  SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL--------TLSGNPIKQIKT--- 140
             A++ L++L  L  + N +Q++    F    SL KL        +L   PI  +KT   
Sbjct: 71  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 130
Query: 141 --------------GAFQPLSYLVTLELSKCGIE-------------------------- 160
                           F  L+ L  L+LS   I+                          
Sbjct: 131 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 190
Query: 161 --VIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LR 216
              I+  AF  +  L+ L LD N++ ++  G     T L  I LH NPW C C  I  L 
Sbjct: 191 MNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 249
Query: 217 RWL 219
           RWL
Sbjct: 250 RWL 252

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 58/243 (23%)
Query: 32  TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
           T +C+  +   + + +  +T+ LD + N L+ L +  F       LQ + LSRC I  I+
Sbjct: 12  TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 69
Query: 92  SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL--------TLSGNPIKQIKT--- 140
             A++ L++L  L  + N +Q++    F    SL KL        +L   PI  +KT   
Sbjct: 70  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 129
Query: 141 --------------GAFQPLSYLVTLELSKCGIE-------------------------- 160
                           F  L+ L  L+LS   I+                          
Sbjct: 130 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 189
Query: 161 --VIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LR 216
              I+  AF  +  L+ L LD N++ ++  G     T L  I LH NPW C C  I  L 
Sbjct: 190 MNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 248
Query: 217 RWL 219
           RWL
Sbjct: 249 RWL 251

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 58/243 (23%)
Query: 32  TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
           T +C+  +   + + +  +T+ LD + N L+ L +  F       LQ + LSRC I  I+
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 68
Query: 92  SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL--------TLSGNPIKQIKT--- 140
             A++ L++L  L  + N +Q++    F    SL KL        +L   PI  +KT   
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 141 --------------GAFQPLSYLVTLELSKCGIE-------------------------- 160
                           F  L+ L  L+LS   I+                          
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 161 --VIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LR 216
              I+  AF  +  L+ L LD N++ ++  G     T L  I LH NPW C C  I  L 
Sbjct: 189 MNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 247
Query: 217 RWL 219
           RWL
Sbjct: 248 RWL 250

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 23  ICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYL 82
           +C  K   +T  C N  L  + + +   T+ L+++ N L T+HN  F +  L+NL  + L
Sbjct: 4   MCIEKEANKTYNCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSR--LMNLTFLDL 61
Query: 83  SRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA 142
           +RC+I+ I                          DTF  +  L  L L+GNP+  +   +
Sbjct: 62  TRCQINWIH------------------------EDTFQSHHQLSTLVLTGNPLIFMAETS 97
Query: 143 FQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
                 L  L L + GI  +E      L++LE L L +N I++I
Sbjct: 98  LNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSI 141

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 91/231 (39%), Gaps = 33/231 (14%)
Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
           Q L+ + N    L ++ F++   + L  +  +R  I+   S  F+ L  L  L+ ++  L
Sbjct: 376 QTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS-PFQNLHFLQVLNLTYCFL 434
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQ---IKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
            T         P L  L L GN  +     KT   Q +  L  L LS CG+  I+  AF 
Sbjct: 435 DTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFH 494
Query: 169 GLDSLEWLKLDNNKIT----------------------TISGSNILP--TGLHGIDLHHN 204
            L  +  + L +N +T                       I    +LP  +    I+L HN
Sbjct: 495 SLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHN 554
Query: 205 PWTCDCLLIGLRRWLEST--KTPMAIDPICSVPPRLSSVTIKQLSIDELAC 253
           P  C C  I    W +    K   + +  C+ PP L  V   +LS  +L+C
Sbjct: 555 PLDCTCSNIHFLTWYKENLHKLEGSEETTCANPPSLRGV---KLSDVKLSC 602

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 96/243 (39%), Gaps = 58/243 (23%)
Query: 32  TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
           T +C   +   + + +  +T+ LD + N L+ L +  F       LQ + LSRC I  I+
Sbjct: 12  TYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 69
Query: 92  SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL--------TLSGNPIKQIKT--- 140
             A++ L++L  L  + N +Q++    F    SL KL        +L   PI  +KT   
Sbjct: 70  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 129
Query: 141 --------------GAFQPLSYLVTLELSKCGIE-------------------------- 160
                           F  L+ L  L+LS   I+                          
Sbjct: 130 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 189
Query: 161 --VIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LR 216
              I+  AF  +  L+ L LD N++ ++  G     T L  I LH NPW C C  I  L 
Sbjct: 190 MNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 248
Query: 217 RWL 219
           RWL
Sbjct: 249 RWL 251

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 14/176 (7%)
Query: 74  LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTV--------PSDTFPDYPSL 125
           L NL  + LS   I+ I+     GL NL  LDF HN L  +        P +       L
Sbjct: 479 LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHL 538
Query: 126 MKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITT 185
             L L  N + +I  G F+ L  L ++ L    +  +E   F    SL  L L  N IT+
Sbjct: 539 HILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITS 598
Query: 186 ISGSNILP--TGLHGIDLHHNPWTCDCLLIG-LRRWLESTKT---PMAIDPICSVP 235
           +      P    L+ +D+  NP+ C C  I     W+  T T    ++   +C+ P
Sbjct: 599 VEKDVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTP 654

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 32/184 (17%)
Query: 39  SLITVVEGMDPNTQVL--DYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR 96
           S++  +  + P T +   D  G N+   H ++     L  L++   +  R++ I +    
Sbjct: 90  SILDYLGIVSPTTLIFESDNLGMNITRQHLDR-----LHGLKRFRFTTRRLTHIPANLLT 144
Query: 97  GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK 156
            + NL  L+   N+ + +PS  F D  +L  +    N ++Q+  G F  +  L  L L+ 
Sbjct: 145 DMRNLSHLELRANI-EEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLAS 203
Query: 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIG-L 215
             ++ + D  F  L                       T L  I LH NPW C C  I  L
Sbjct: 204 NQLKSVPDGIFDRL-----------------------TSLQKIWLHTNPWDCSCPRIDYL 240
Query: 216 RRWL 219
            RWL
Sbjct: 241 SRWL 244

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 66/131 (50%)
Query: 56  YTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP 115
           +  +N+K      F  +   +++ + LS   +  ++S+ F  L +L  L+ ++N +  + 
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 116 SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175
            + F    +L  L LS N + ++ +  F  L  +  ++L K  I +I+D  F  L+ L+ 
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 176 LKLDNNKITTI 186
           L L +N +TTI
Sbjct: 367 LDLRDNALTTI 377

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
           CP+ C C    G + + C +K L +V  G+  +   L+   N L++L +  F K  L  L
Sbjct: 1   CPSRCSC---SGTE-IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDK--LTQL 54
Query: 78  QKIYLSRCRISV--IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
            K+ LS   +S     S++  G T+L  LD S N + T+ S+ F     L  L    + +
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNL 113
Query: 136 KQI-KTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP 193
           KQ+ +   F  L  L+ L++S     V  +  F GL SLE LK+  N        N LP
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ----ENFLP 168

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
           EG++  L C V   P  +ITWL +G PIQ         +A  + E G     +EL I ++
Sbjct: 25  EGQDFVLQCSVRGTPVPRITWLLNGQPIQ---------YARSTCEAGV----AELHIQDA 71
Query: 328 NIDDNGTFVCVAENQAGSTS 347
             +D+GT+ C+AEN  G  S
Sbjct: 72  LPEDHGTYTCLAENALGQVS 91

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)
Query: 61  LKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF------------------------- 95
           L+TL NE F  +    L  + L++ +IS I+S AF                         
Sbjct: 372 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 431
Query: 96  RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA--FQPLSYLVTLE 153
           RGL N+ ++  S+N    +  ++F   PSL +L L    +K + +    FQPL  L  L+
Sbjct: 432 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 491
Query: 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
           LS   I  I D    GL+ LE L L +N +  +
Sbjct: 492 LSNNNIANINDDMLEGLEKLEILDLQHNNLARL 524

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)
Query: 61  LKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF------------------------- 95
           L+TL NE F  +    L  + L++ +IS I+S AF                         
Sbjct: 377 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 436
Query: 96  RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA--FQPLSYLVTLE 153
           RGL N+ ++  S+N    +  ++F   PSL +L L    +K + +    FQPL  L  L+
Sbjct: 437 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 496
Query: 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
           LS   I  I D    GL+ LE L L +N +  +
Sbjct: 497 LSNNNIANINDDMLEGLEKLEILDLQHNNLARL 529

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 54  LDYTGNNLK-TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLD-FSHNVL 111
           LD +GN  K ++    F  +    +Q + LS    S     +F G TN  D D F+   L
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---SYNMGSSF-GHTNFKDPDNFTFKGL 272
Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171
           +     T           LS + I  +    F   + L  L L++  I  I+D AF GL 
Sbjct: 273 EASGVKT---------CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323
Query: 172 SLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHNPWTCDCLLIG-LRRWL 219
            L+ L LD N++ ++  G     T L  I LH NPW C C  I  L RWL
Sbjct: 324 HLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 373

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)
Query: 61  LKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF------------------------- 95
           L+TL NE F  +    L  + L++ +IS I+S AF                         
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 96  RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA--FQPLSYLVTLE 153
           RGL N+ ++  S+N    +  ++F   PSL +L L    +K + +    FQPL  L  L+
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
           LS   I  I D    GL+ LE L L +N +  +
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 32  TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
           T +C+++ L  V + +  +T+ +D + N LK L +  F       LQ + LSRC I  I+
Sbjct: 15  TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFS--ELQWLDLSRCEIETIE 72
Query: 92  SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151
            KA+ GL +L +L  + N +Q+    +F    SL  L      +  +++    P+  L+T
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF---PIGQLIT 129
Query: 152 LELSKCGIEVIED----AAFVGLDSLEWLKLDNNKITTISGSNI 191
           L+        I      A F  L +L  + L  N I TI+ +++
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 32  TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
           T +C+  +   + + +  +T+ LD + N L+ L +  F       LQ + LSRC I  I+
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 68
Query: 92  SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151
             A++ L++L  L  + N +Q++    F    SL KL      +  ++     P+ +L T
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKT 125
Query: 152 LELSKCGIEVIEDAA----FVGLDSLEWLKLDNNKITTISGSNI 191
           L+       +I+       F  L +LE L L +NKI +I  +++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 27/157 (17%)
Query: 94  AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTL 152
            F  L NL+ LD SH   +   +  F    SL  L ++GN  ++      F  L  L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI----------------SGSNIL---- 192
           +LS+C +E +   AF  L SL+ L + +N   ++                S ++I+    
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 193 ------PTGLHGIDLHHNPWTCDCLLIGLRRWLESTK 223
                 P+ L  ++L  N + C C      +W++  +
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 572

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 32  TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
           T +C+++ L  V + +  +T+ +D + N LK L +  F       LQ + LSRC I  I+
Sbjct: 10  TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFS--ELQWLDLSRCEIETIE 67
Query: 92  SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151
            KA+ GL +L +L  + N +Q+    +F    SL  L      +  +++    P+  L+T
Sbjct: 68  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF---PIGQLIT 124
Query: 152 LELSKCGIEVIED----AAFVGLDSLEWLKLDNNKITTISGSNI 191
           L+        I      A F  L +L  + L  N I TI+ +++
Sbjct: 125 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 168

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 32  TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
           T +C+  +   + + +  +T+ LD + N L+ L +  F       LQ + LSRC I  I+
Sbjct: 35  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 92
Query: 92  SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151
             A++ L++L  L  + N +Q++    F    SL KL      +  ++     P+ +L T
Sbjct: 93  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKT 149
Query: 152 LELSKCGIEVIEDAA----FVGLDSLEWLKLDNNKITTISGSNI 191
           L+       +I+       F  L +LE L L +NKI +I  +++
Sbjct: 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 27/157 (17%)
Query: 94  AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTL 152
            F  L NL+ LD SH   +   +  F    SL  L ++GN  ++      F  L  L  L
Sbjct: 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499
Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI----------------SGSNIL---- 192
           +LS+C +E +   AF  L SL+ L + +N   ++                S ++I+    
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559
Query: 193 ------PTGLHGIDLHHNPWTCDCLLIGLRRWLESTK 223
                 P+ L  ++L  N + C C      +W++  +
Sbjct: 560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 596

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
           +ACP+ C C       TV C  +SL +V  G+   TQVL    N +  L    F    L 
Sbjct: 11  AACPSQCSCS----GTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDS--LT 64
Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
            L  + L+  +++ +    F  LT L  L    N L+++P   F +  SL  + L  NP
Sbjct: 65  QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNP 123

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 270 KNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI 329
           ++V+L C     PE  +TW  DG PI+ E     ++   YS         SEL+I   + 
Sbjct: 29  QSVTLACDADGFPEPTMTWTKDGEPIEQE-----DNEEKYS----FNYDGSELIIKKVDK 79
Query: 330 DDNGTFVCVAENQAGSTSSNYTIRIVLK 357
            D   ++C+AEN+AG   +   +++  K
Sbjct: 80  SDEAEYICIAENKAGEQDATIHLKVFAK 107

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 237 RLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPI 295
           R +S+ I  L  D+   EP+ T       + +G+   L C     IPE  + W+ DGVP+
Sbjct: 98  RHASLQIAVLR-DDFRVEPKDT------RVAKGETALLECGPPKGIPEPTLIWIKDGVPL 150
Query: 296 QN-ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
            + ++MS   S  V   + G       LLI N    D G + C+A+N  G+  S+Y   I
Sbjct: 151 DDLKAMSFGASSRVRIVDGGN------LLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204
Query: 355 V 355
           V
Sbjct: 205 V 205

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 237 RLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPI 295
           R +S+ I  L  D+   EP+ T       + +G+   L C     IPE  + W+ DGVP+
Sbjct: 98  RHASLQIAVLR-DDFRVEPKDT------RVAKGETALLECGPPKGIPEPTLIWIKDGVPL 150
Query: 296 QN-ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
            + ++MS   S  V   + G       LLI N    D G + C+A+N  G+  S+Y   I
Sbjct: 151 DDLKAMSFGASSRVRIVDGGN------LLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204
Query: 355 V 355
           V
Sbjct: 205 V 205

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
           IQEGK ++L C V   P  +++WL      +NE   AS+ H     E G   + +   I 
Sbjct: 234 IQEGKALNLTCNVWGDPPPEVSWL------KNEKALASDDHCNLKFEAG---RTAYFTIN 284
Query: 326 NSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
             +  D+G +  V +N+ GS +S++T+ + + E
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 317

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           + I EG+   +  KVS +P   ++W  +G  +Q++ +     H +  +E+G       L+
Sbjct: 15  MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDL-----HKMIVSEKGLH----SLI 65
Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
                  D G + CVA+N+AG  +    + ++ KE
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain Length = 130

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 186 ISGSNI--LPTGL-------HGIDLHHNPWTCDCLLIGLRRWL--ESTKTPMAIDPICSV 234
           ++G+N+  LP GL           L  NPW CDC L+ LR WL     + P   D  C  
Sbjct: 38  LTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYR-DLRCVA 96
Query: 235 PPRLSSVTIKQLSIDEL--ACEP 255
           PP L    +  L+ DEL  AC P
Sbjct: 97  PPALRGRLLPYLAEDELRAACAP 119

>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13 Length = 212

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
           IQEGK ++L C V   P  +++WL      +NE   A   H     E G   + +   I 
Sbjct: 129 IQEGKALNLTCNVWGDPPPEVSWL------KNEKALAQTDHCNLKFEAG---RTAYFTIN 179
Query: 326 NSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
             +  D+G +  V +N+ GS +S++T+ + + E
Sbjct: 180 GVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212

>pdb|3SB4|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat Protein (Bt_1240) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.99 A Resolution Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV-TLELSKCG 158
           NLV LD S     T+P  TF     L+K+ L  N +K I    F     L  TLEL    
Sbjct: 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP-AS 284
Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGL 196
           +  IE  AF G D+L ++    +KITT+ G  +   G+
Sbjct: 285 VTAIEFGAFXGCDNLRYVLATGDKITTL-GDELFGNGV 321

>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant Length = 129

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 176 LKLDNNKITTI--SGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLES--TKTPMAIDPI 231
           L L  N +T++     + LP  L    L  NPW CDC L  LR WLE    + P   D  
Sbjct: 35  LVLTGNNLTSVPPGAFDHLPQ-LRTAHLGANPWRCDCSLTYLRLWLEDRPERAPYR-DLR 92
Query: 232 CSVPPRLSSVTIKQLSIDEL--ACEP 255
           C  PP L    +  L+ DEL  AC P
Sbjct: 93  CVAPPALRGRLLPYLAEDELRAACAP 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	767
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-90
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-62
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-34
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-62
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-60
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-48
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-55
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-50
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-28
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-41
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-34
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-26
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-29
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-27
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-29
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-15
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-18
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-11
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-17
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-16
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-07
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-16
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-09
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-16
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-14
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	4e-16
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	5e-16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	6e-06
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	8e-16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-12
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	7e-11
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-15
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-15
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-15
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-08
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	6e-15
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-15
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	7e-15
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	7e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	8e-15
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	8e-15
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-14
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-14
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-13
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-14
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-14
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-13
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-14
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-11
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-14
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-13
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-14
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	7e-12
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-14
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	6e-13
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-14
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-13
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-14
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-14
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	7e-11
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-14
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	6e-14
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-14
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-13
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-14
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-11
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	8e-14
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-11
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	9e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-14
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-08
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-13
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-09
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-13
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-13
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-12
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-11
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-13
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-09
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-13
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	8e-11
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-13
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-11
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-13
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-11
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-13
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-13
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-10
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-13
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	8e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-10
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-13
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	9e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-05
2ens_A	96	Advanced glycosylation END product-specific recept	6e-13
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-13
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	7e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	7e-13
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-13
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-08
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-13
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-11
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-11
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-05
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-12
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-12
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	5e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-12
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-11
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-08
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-10
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-05
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	4e-12
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-12
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-11
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-12
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	9e-12
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	7e-12
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	7e-12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-07
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-07
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-11
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-07
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-11
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-11
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-11
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-11
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	8e-11
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-08
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-07
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-11
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-11
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-11
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-08
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-06
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-11
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-07
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-11
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-11
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-11
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-09
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-07
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-11
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	8e-10
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-11
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	5e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	6e-11
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	8e-11
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-10
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-10
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-07
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-10
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-10
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-10
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	6e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	7e-10
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-10
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-09
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	5e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	4e-06
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-08
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-08
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	5e-08
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	7e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	8e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-06
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	9e-08
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-07
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-07
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	9e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-04
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	5e-07
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	7e-07
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	8e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	8e-07
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-05
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	7e-06
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	1e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	8e-05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	7e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	1e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	1e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	3e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	4e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	9e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	5e-04
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	6e-04

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  287 bits (735), Expect = 2e-90
 Identities = 80/351 (22%), Positives = 136/351 (38%), Gaps = 33/351 (9%)

Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
           V +CP +C+C        + C  + L  V + +   T +LD + NNL  L  E      L
Sbjct: 9   VVSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPT-RL 63

Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
            NL  + LS   ++ I S+AF  + NL  LD S N L T+    F D  +L  L L  N 
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123

Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD---SLEWLKLDNNKITTISGSNI 191
           I  +   AF+ ++ L  L LS+  I           +    L  L L +NK+  +  +++
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 192 LPT---GLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAID----PICSVPPRLSSVTIK 244
                   +G+ LH+NP  CDC L  L    +  +    +D      C    +L ++   
Sbjct: 184 QKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIF-- 241

Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
             S+D   C           E   G  +++ C        K+        + ++      
Sbjct: 242 --SLDFFNCSE---YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQG----- 291

Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           S+   S   G       L      ++D G + C A  +  + + +  +++ 
Sbjct: 292 SNGSVSVRNGD------LFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY 336

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  216 bits (551), Expect = 2e-62
 Identities = 69/337 (20%), Positives = 118/337 (35%), Gaps = 44/337 (13%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
            + + L     NL ++  E      L  L  + L    I+ I   +F+ L  L  L+ SH
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
                  +       +L  L+++   +  +   A + L YL  L LS   I  IE +   
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269

Query: 169 GLDSLEWLKLDNNKITTI----------------SGSNI--LPTG-------LHGIDLHH 203
            L  L+ ++L   ++  +                SG+ +  L          L  + L  
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 204 NPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE------PQI 257
           NP  CDC L+ + R            P C+ P  +     K      L            
Sbjct: 330 NPLACDCRLLWVFRRR-WRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIR 388

Query: 258 TPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEI 317
                 + + EG  V  +C+    P   I WL      +   +SA  +  +    +GT  
Sbjct: 389 DRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSP----RKHLVSAKSNGRLTVFPDGT-- 442

Query: 318 KKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
               L +  + + DNGT++C+A N  G+ S    + +
Sbjct: 443 ----LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  179 bits (457), Expect = 2e-49
 Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 7/208 (3%)

Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
           + CP  C C  +   + V C  K  + V EG+   T++LD   N +KTL+ ++F      
Sbjct: 1   TGCPPRCECSAQD--RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA--SFP 56

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
           +L+++ L+   +S ++  AF  L NL  L    N L+ +P   F    +L KL +S N I
Sbjct: 57  HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-T 194
             +    FQ L  L +LE+    +  I   AF GL+SLE L L+   +T+I    +    
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 195 GLHGIDLHHNPWTC--DCLLIGLRRWLE 220
           GL  + L H       D     L R   
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKV 204

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  135 bits (341), Expect = 6e-34
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 5/161 (3%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
            N   LD + N +  L +  FQ   L NL+ + +    +  I  +AF GL +L  L    
Sbjct: 104 SNLTKLDISENKIVILLDYMFQ--DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK-CGIEVIEDAAF 167
             L ++P++       L+ L L    I  I+  +F+ L  L  LE+S    ++ +     
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 168 VGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWT 207
            GL +L  L + +  +T +    +     L  ++L +NP +
Sbjct: 222 YGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  214 bits (548), Expect = 3e-62
 Identities = 77/311 (24%), Positives = 125/311 (40%), Gaps = 45/311 (14%)

Query: 49  PNTQVLD-YTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
           P+   LD      L+ +    F+  GL NL+ + L  C I  +       L  L +L+  
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFE--GLFNLKYLNLGMCNIKDMP--NLTPLVGLEELE-- 224

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
                                 +SGN   +I+ G+F  LS L  L +    + +IE  AF
Sbjct: 225 ----------------------MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262

Query: 168 VGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWL-ESTKTP 225
            GL SL  L L +N ++++      P   L  + LHHNPW CDC ++ L  WL E   T 
Sbjct: 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTN 322

Query: 226 MAIDPICSVPPRLSSVTIKQLSIDELACE-PQITPSTFYLEIQEGKNVSLLCKVSAIPEA 284
                 C  P  +    + ++      C  P I  +   L I EG+   L C+    P +
Sbjct: 323 STCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTP--PMS 380

Query: 285 KITWLFD-GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA 343
            + WL   G  + + S        +    +GT      L   +  + D G + C+  N A
Sbjct: 381 SVKWLLPNGTVLSHASRHPR----ISVLNDGT------LNFSHVLLSDTGVYTCMVTNVA 430

Query: 344 GSTSSNYTIRI 354
           G+++++  + +
Sbjct: 431 GNSNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  136 bits (344), Expect = 2e-34
 Identities = 53/225 (23%), Positives = 79/225 (35%), Gaps = 37/225 (16%)

Query: 1   MMYWIFLIATII-----KIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLD 55
           +   ++++   I          CP+ C C  +     V C  + L  V +G+  NT+ L+
Sbjct: 24  LTAQVWILCAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIPSNTRYLN 81

Query: 56  YTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVP 115
                                     L    I +I +  FR L +L  L    N ++ + 
Sbjct: 82  --------------------------LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 116 SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175
              F    SL  L L  N +  I +GAF+ LS L  L L    IE I   AF  + SL  
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

Query: 176 LKL-DNNKITTISGSNILP--TGLHGIDLHHNPWTCDCLLIGLRR 217
           L L +  K+  IS          L  ++L          L  L  
Sbjct: 176 LDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG 219

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  208 bits (532), Expect = 3e-60
 Identities = 74/310 (23%), Positives = 121/310 (39%), Gaps = 40/310 (12%)

Query: 49  PNTQVLD-YTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
           P+ + LD      L  +    F+  GL NL+ + L+ C +  I       L  L +LD S
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFE--GLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLS 215

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
            N L  +   +F     L KL +  + I+ I+  AF  L  LV + L+   + ++    F
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWL-ESTKTPM 226
             L  LE +                        LHHNPW C+C ++ L  W+ +   +  
Sbjct: 276 TPLHHLERI-----------------------HLHHNPWNCNCDILWLSWWIKDMAPSNT 312

Query: 227 AIDPICSVPPRLSSVTIKQLSIDELACE-PQITPSTFYLEIQEGKNVSLLCKVSAIPEAK 285
           A    C+ PP L    I +L  +   C  P I      L + EG    L C+ S      
Sbjct: 313 ACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRAST-SLTS 371

Query: 286 ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS 345
           ++W+    P        +    +    +GT      L   N  + D G + C+  N  G+
Sbjct: 372 VSWI---TPNGTVMTHGAYKVRIAVLSDGT------LNFTNVTVQDTGMYTCMVSNSVGN 422

Query: 346 TSSNYTIRIV 355
           T+++ T+ + 
Sbjct: 423 TTASATLNVT 432

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  176 bits (447), Expect = 3e-48
 Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 6/194 (3%)

Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
              CP+ C C  +     V CV K+L  V +G+  NT++L+   N ++ +    F+   L
Sbjct: 32  AQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFK--HL 87

Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
            +L+ + LSR  I  I+  AF GL NL  L+   N L T+P+  F     L +L L  NP
Sbjct: 88  RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147

Query: 135 IKQIKTGAFQPLSYLVTLELSKC-GIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP 193
           I+ I + AF  +  L  L+L +   +  I + AF GL +L +L L    +  I     L 
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLI 207

Query: 194 TGLHGIDLHHNPWT 207
             L  +DL  N  +
Sbjct: 208 K-LDELDLSGNHLS 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  191 bits (488), Expect = 1e-55
 Identities = 74/284 (26%), Positives = 110/284 (38%), Gaps = 50/284 (17%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQ------------------------V 53
           CP +C+C  +  K T  C  + L  V  G+   +Q                        +
Sbjct: 2   CPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60

Query: 54  LDYTGNNLKTLHNEKFQKM-----------------------GLVNLQKIYLSRCRISVI 90
           L    N L  +    F  +                       GL  L  ++L RC +  +
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 91  DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV 150
               FRGL  L  L    N LQ +P DTF D  +L  L L GN I  +   AF+ L  L 
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCD 209
            L L +  +  +   AF  L  L  L L  N ++ +    + P   L  + L+ NPW CD
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

Query: 210 CLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELAC 253
           C    L  WL+      + +  CS+P RL+   +K+L+ ++L  
Sbjct: 241 CRARPLWAWLQK-FRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  177 bits (451), Expect = 3e-50
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 8/206 (3%)

Query: 49  PNTQVLDYTGNNLKTLHNEK-FQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
              + LD+  +NLK +     F    L NL  + +S     V  +  F GL++L  L  +
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158

Query: 108 HN-VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAA 166
            N   +    D F +  +L  L LS   ++Q+   AF  LS L  L +S      ++   
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 167 FVGLDSLEWLKLDNNKITTISGSNI--LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKT 224
           +  L+SL+ L    N I T     +   P+ L  ++L  N + C C      +W++  + 
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 278

Query: 225 --PMAIDPICSVPPRLSSVTIKQLSI 248
                    C+ P     + +  L+I
Sbjct: 279 LLVEVERMECATPSDKQGMPVLSLNI 304

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  116 bits (292), Expect = 1e-28
 Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 37/194 (19%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
           CP+ C C        + C +K L +V  G+  +   L+                      
Sbjct: 1   CPSRCSCS----GTEIRCNSKGLTSVPTGIPSSATRLE---------------------- 34

Query: 78  QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT--VPSDTFPDYPSLMKLTLSGNPI 135
               L   ++  +    F  LT L  L  S N L      S +     SL  L LS N +
Sbjct: 35  ----LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVI-EDAAFVGLDSLEWLKLDNNKITTISGSNILP- 193
             + +  F  L  L  L+     ++ + E + F+ L +L +L + +        + I   
Sbjct: 91  ITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNG 148

Query: 194 -TGLHGIDLHHNPW 206
            + L  + +  N +
Sbjct: 149 LSSLEVLKMAGNSF 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  165 bits (419), Expect = 7e-47
 Identities = 64/246 (26%), Positives = 96/246 (39%), Gaps = 31/246 (12%)

Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTL-HNEKFQKMGLV 75
           ACP  C C+      TV+C N+ L  + E +   T  L    N    L     F+   L 
Sbjct: 4   ACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK--KLP 57

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
            L+KI  S  +I+ I+  AF G + + ++  + N L+ V    F    SL  L L  N I
Sbjct: 58  QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
             +   +F  LS +  L L    I  +   AF  L SL                      
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST-------------------- 157

Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEP 255
              ++L  NP+ C+C L  L  WL   K  +  +P C  P  L  + I+ ++I +  C+ 
Sbjct: 158 ---LNLLANPFNCNCYLAWLGEWLRK-KRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDD 213

Query: 256 QITPST 261
                 
Sbjct: 214 AHHHHH 219

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  166 bits (421), Expect = 8e-46
 Identities = 46/338 (13%), Positives = 86/338 (25%), Gaps = 92/338 (27%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
           CP +C      G   + C     +  +                                 
Sbjct: 1   CPDACCPH---GSSGLRCTRDGALDSLHH------------------------------- 26

Query: 78  QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
                              G  NL +L   +                          ++ 
Sbjct: 27  -----------------LPGAENLTELYIENQ-----------------------QHLQH 46

Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLH 197
           ++    + L  L  L + K G+  +   AF     L  L L  N + ++S   +    L 
Sbjct: 47  LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106

Query: 198 GIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQI 257
            + L  NP  C C L  L+RW E          +     +           +     P +
Sbjct: 107 ELVLSGNPLHCSCALRWLQRWEEEGLG-----GVPEQKLQCHGQGPLAHMPNASCGVPTL 161

Query: 258 TPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEI 317
                   +  G +V L C+V      +  W+   +                +  +   +
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSA------------TVMKSGGL 209

Query: 318 KKSELLIYN-SNIDDNGTFVCVAENQAGSTSSNYTIRI 354
               L + N ++  +     C AEN  G    +  + +
Sbjct: 210 PSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  149 bits (379), Expect = 2e-41
 Identities = 60/240 (25%), Positives = 89/240 (37%), Gaps = 32/240 (13%)

Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
            CP +C C        V+C  K L  +   +      +    N                 
Sbjct: 4   HCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQN----------------- 42

Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
                     I VI   AF     L  +D S+N +  +  D F    SL  L L GN I 
Sbjct: 43  ---------TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TG 195
           ++    F+ L  L  L L+   I  +   AF  L +L  L L +NK+ TI+     P   
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 196 LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEP 255
           +  + L  NP+ CDC L  L  +L +     +    C+ P RL++  I Q+   +  C  
Sbjct: 154 IQTMHLAQNPFICDCHLKWLADYLHTNPIETS-GARCTSPRRLANKRIGQIKSKKFRCSA 212

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  149 bits (378), Expect = 2e-40
 Identities = 53/223 (23%), Positives = 81/223 (36%), Gaps = 25/223 (11%)

Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM---- 72
            C  S +         V C  ++L  +   +  +T +L  + N L T             
Sbjct: 3   ICEVSKVAS----HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 73  ----------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS 116
                            L  L  + LS  ++  +     + L  L  LD S N L ++P 
Sbjct: 59  QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPL 117

Query: 117 DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL 176
                   L +L L GN +K +  G   P   L  L L+   +  +      GL++L+ L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 177 KLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWL 219
            L  N + TI         L    LH NPW C+C ++  RRWL
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  154 bits (390), Expect = 3e-39
 Identities = 54/220 (24%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
           P+ Q L      LK + +       L NL  + LS   I+ I+     GL  L  LD  H
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 109 NVLQTVPSDTFPDYP--------SLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIE 160
           N L  +     P  P         L  L L  N   +I    F+ L  L  ++L    + 
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 161 VIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNPWTCDC-LLIGLRR 217
            +  + F    SL+ L L  N IT++      P    L  +D+  NP+ C C  +     
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

Query: 218 WLESTKTP---MAIDPICSVPPRLSSVTIKQLSIDELACE 254
           W+  T T    ++   +C+ PP      +     D  +C+
Sbjct: 634 WINETHTNIPELSSHYLCNTPPHYHGFPV--RLFDTSSCK 671

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  140 bits (355), Expect = 8e-35
 Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 5/178 (2%)

Query: 31  QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI 90
           +  +C +  L  V + +  N  VL+ T N L+ L    F       L  + +    IS +
Sbjct: 7   EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKL 64

Query: 91  DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV 150
           + +  + L  L  L+  HN L  +   TF    +L +L L  N I++IK   F     L+
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG---SNILPTGLHGIDLHHNP 205
           TL+LS  G+   +    V L++L+ L L NNKI  +          + L  ++L  N 
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (295), Expect = 2e-27
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 6/162 (3%)

Query: 49  PNTQVLDYTGN--NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106
            N + L  + +  +L+TL NE F  +    L  + L++ +IS I+S AF  L +L  LD 
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 107 SHNVL-QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDA 165
             N + Q +    +    ++ ++ LS N   Q+   +F  +  L  L L +  ++ ++ +
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 166 --AFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHN 204
              F  L +L  L L NN I  I+   +     L  +DL HN
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (289), Expect = 1e-26
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 14/167 (8%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
           + L  + + L T  N  F  +   NL  + LS   ++V+ + +F  L  L      +N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 112 QTVPSDTFPDYPSLMKLTLSGN---------PIKQIKTGAFQPLSYLVTLELSKCGIEVI 162
           Q + S +     ++  L L  +          + +I   +FQ L  L  L +    I  I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 163 EDAAFVGLDSLEWLKLDNNKITTIS-----GSNILPTGLHGIDLHHN 204
           +   F GL +L++L L N+  +  +       ++  + LH ++L  N
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (284), Expect = 4e-26
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 10/164 (6%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV--IDSKAFRGLTN--LVDL 104
              + L+   N++  + +  F   GL+NL+ + LS    S+  + ++ F  L +  L  L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 105 DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTLELSKCGIEVIE 163
           + + N +  + SD F     L  L L  N I Q +    ++ L  +  + LS      + 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 164 DAAFVGLDSLEWLKLDNNKITTI-SGSNILP--TGLHGIDLHHN 204
             +F  + SL+ L L    +  + S  +       L  +DL +N
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (283), Expect = 6e-26
 Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 6/162 (3%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
            N Q L  + N ++ L +E+       +L+K+ LS  +I       F  +  L  L  ++
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 109 NVLQTVPSDTFPDY---PSLMKLTLSGNPIKQIKTGAFQPLSY--LVTLELSKCGIEVIE 163
             L    ++         S+  L+LS + +       F  L +  L  L+LS   + V+ 
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 164 DAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHN 204
           + +F  L  LE+  L+ N I  +   ++     +  ++L  +
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.1 bits (245), Expect = 3e-21
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
           V+ +    S  +++ +        TN+  L+ +HN L+ +P+  F  Y  L  L +  N 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP- 193
           I +++    Q L  L  L L    +  + D  F    +L  L L +N I  I  +  +  
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 194 TGLHGIDLHHN 204
             L  +DL HN
Sbjct: 121 KNLITLDLSHN 131

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  145 bits (367), Expect = 4e-39
 Identities = 64/265 (24%), Positives = 107/265 (40%), Gaps = 36/265 (13%)

Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
                 C C     K +V+C +K L  +   +  +T+ LD   N L +L ++ F    L 
Sbjct: 6   KKDGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLT 61

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
            L+ +YL+  ++  + +  F+ L NL  L  + N LQ +P   F    +L +L L  N +
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS-------- 187
           K +    F  L+ L  L L    ++ +    F  L SL+ L+L NN++  +         
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 188 -------GSNIL---PTG-------LHGIDLHHNPWTCDCL-LIGLRRWLESTKTPMAID 229
                   +N L   P G       L  + L  NPW C C  +I + +WL   K    + 
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL-KKKADEGLG 240

Query: 230 PICSVPPRLSS-----VTIKQLSID 249
            + +            +T K  + D
Sbjct: 241 GVDTAGCEKGGKAVLEITEKDAASD 265

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  152 bits (386), Expect = 5e-39
 Identities = 45/209 (21%), Positives = 74/209 (35%), Gaps = 7/209 (3%)

Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
           ++    CI K     +T  C N  L  +   +  +T+ L+++ N L T+ N  F    L+
Sbjct: 2   TSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS--RLI 57

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
           NL  + L+RC+I  I    F+    L  L  + N L  +         +L  L      I
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-T 194
             I          L +L L    I  I+       + L+ L   NN I  +S  ++    
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 195 GLHGIDLH--HNPWTCDCLLIGLRRWLES 221
               + L+   N               +S
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  147 bits (372), Expect = 3e-37
 Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 8/206 (3%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
           P  ++LD     LK    +   +  L  L+ + LS   + +   + F GL  L  L+   
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 109 NVLQTV---PSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDA 165
           N         +++      L  L LS   +  I   AF  L  +  ++LS   +      
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 166 AFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKT 224
           A   L  +  L L +N I+ I  S +   +    I+L  NP  C C  I    W +    
Sbjct: 519 ALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQ 577

Query: 225 --PMAIDPICSVPPRLSSVTIKQLSI 248
                 D +C  PP L  V +  +++
Sbjct: 578 KLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (313), Expect = 9e-30
 Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 9/176 (5%)

Query: 37  NKSLITVVEGMDPNT----QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
            ++L+ + +G+  +T     +  +   + + +    F+ +  ++++ I L +     I S
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 93  KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
             F   + L +LD +   L  +P        +L KL LS N  + +   +      L  L
Sbjct: 272 NTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 153 ELSKCGIEV-IEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG---LHGIDLHHN 204
            +      + +       L++L  L L ++ I T    N+       L  ++L +N
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  101 bits (253), Expect = 2e-22
 Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 31/185 (16%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNL--VDLDF 106
              + L    N++ ++   K        L+ +      I  +  +    L     + L+ 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGF--PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 107 SHNVLQTVPSDTFP-------------------------DYPSLMKLTLSGNPIKQIKTG 141
           + N +  +    F                             SL   T      + I   
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 142 AFQPLS--YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGI 199
            F+ L    + ++ L K     I    F     L+ L L    ++ +    +  + L  +
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKL 306

Query: 200 DLHHN 204
            L  N
Sbjct: 307 VLSAN 311

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  151 bits (383), Expect = 8e-39
 Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 9/192 (4%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI-DSKAFRGLTNLVDLDFS 107
            + + LD + N + T+ +  F  +GL  L+ +      +  + +   F  L NL+ LD S
Sbjct: 373 TSLKYLDLSFNGVITMSSN-F--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTLELSKCGIEVIEDAA 166
           H   +   +  F    SL  L ++GN  ++      F  L  L  L+LS+C +E +   A
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 167 FVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNPWTCDCLLIG-LRRWLESTK 223
           F  L SL+ L + +N++ ++    I    T L  I LH NPW C C  I  L RWL    
Sbjct: 490 FNSLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 548

Query: 224 TPMAIDPICSVP 235
                   CS  
Sbjct: 549 QKEQGSAKCSGS 560

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (304), Expect = 9e-29
 Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 30/189 (15%)

Query: 22  CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIY 81
           C+        T +C+  +   + + +  +T+ LD                          
Sbjct: 3   CVEVVPNI--TYQCMELNFYKIPDNLPFSTKNLD-------------------------- 34

Query: 82  LSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG 141
           LS   +  + S +F     L  LD S   +QT+    +     L  L L+GNPI+ +  G
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 142 AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGI 199
           AF  LS L  L   +  +  +E+     L +L+ L + +N I +          T L  +
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 200 DLHHNPWTC 208
           DL  N    
Sbjct: 155 DLSSNKIQS 163

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 17/194 (8%)

Query: 34  ECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV-IDS 92
           + +  + + V+  M      LD + N +  +    F+++    L K+ L     S+ +  
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMK 218

Query: 93  KAFRGLTNLVDLD------FSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK---TGAF 143
              +GL  L           +   L+           +L         +          F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 144 QPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHH 203
             L+ + +  L    IE ++D ++      + L+L N K        +    L  +    
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQF--PTLKLKSLKRLTFTS 334

Query: 204 NPWTCDCLLIGLRR 217
           N        + L  
Sbjct: 335 NKGGNAFSEVDLPS 348

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  142 bits (361), Expect = 9e-38
 Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 9/207 (4%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
           P+ + L    NN+  +   + Q       + IYL+  +I+++        + +  LD   
Sbjct: 99  PSIETLHAANNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 109 NVLQTVPSDTFPDY-PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
           N + TV          +L  L L  N I  +K       + L TL+LS   +  +    F
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEF 210

Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMA 227
                + W+ L NNK+  I  +      L   DL  N + C  L     +          
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 228 IDPICSVPPRLSSVTIKQLSIDELACE 254
                +                   CE
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (283), Expect = 2e-27
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 13/157 (8%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
              ++   T ++LK       Q     N++++ LS   +S I +      T L  L+ S 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
           NVL            +L  L L+ N ++++          + TL  +   I  +  +   
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSRGQ 120

Query: 169 GLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHN 204
                + + L NNKIT +   +    + +  +DL  N
Sbjct: 121 ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 6e-22
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 9/131 (6%)

Query: 74  LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
               +   ++   +    +   +   N+ +LD S N L  + +     +  L  L LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 134 PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP 193
            + +      + LS L TL+L+   ++ +         S+E L   NN I+ +S S    
Sbjct: 69  VLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRG-- 119

Query: 194 TGLHGIDLHHN 204
            G   I L +N
Sbjct: 120 QGKKNIYLANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 6e-19
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 95  FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154
            +          + + L+   +       ++ +L LSGNP+ QI      P + L  L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
           S   +    D     L +L  L L+NN +  +         +  +   +N
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN 109

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 116 SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175
            +   +        ++ + +KQ      Q    +  L+LS   +  I  A       LE 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 176 LKLDNNKITTISGSNILPTGLHGIDLHHN 204
           L L +N +        L T L  +DL++N
Sbjct: 63  LNLSSNVLYETLDLESLST-LRTLDLNNN 90

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  143 bits (363), Expect = 2e-37
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 4/169 (2%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
            N +++ +  + ++ L            ++ + L+  +I  ID+ AF     +  L    
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
           N ++ +P   F + P L  L L  N +  +  G F     L TL +S   +E IED  F 
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRR 217
              SL+ L+L +N++T +  S I    L   ++ +N  +   + I +  
Sbjct: 163 ATTSLQNLQLSSNRLTHVDLSLI--PSLFHANVSYNLLSTLAIPIAVEE 209

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  141 bits (358), Expect = 9e-37
 Identities = 44/192 (22%), Positives = 71/192 (36%), Gaps = 13/192 (6%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
              + LD + N++  +            L  + L    ++            LV++D S+
Sbjct: 205 IAVEELDASHNSINVVRGPVNV-----ELTILKLQHNNLTDTA--WLLNYPGLVEVDLSY 257

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
           N L+ +    F     L +L +S N +  +     QP+  L  L+LS   +  +E     
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQP- 315

Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAI 228
             D LE L LD+N I T+  S      L  + L HN W C+ L    R            
Sbjct: 316 QFDRLENLYLDHNSIVTLKLSTH--HTLKNLTLSHNDWDCNSLRALFRNVARP--AVDDA 371

Query: 229 DPICSVPPRLSS 240
           D  C +  +L  
Sbjct: 372 DQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (310), Expect = 2e-30
 Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 3/174 (1%)

Query: 33  VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
           V+        +   +  +    D   +         F+ + L N + +      +  + +
Sbjct: 3   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62

Query: 93  KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
                   +  L+ +   ++ + +  F    ++ KL +  N I+ +    FQ +  L  L
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHN 204
            L +  +  +    F     L  L + NN +  I   +     T L  + L  N
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSN 175

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  144 bits (364), Expect = 5e-37
 Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 4/182 (2%)

Query: 59  NNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDT 118
            N K   N  F+ +    ++   LS+ +I  +    F   T+L  L  + N +  +  + 
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318

Query: 119 FPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKL 178
           F     L+KL LS N +  I +  F+ L  L  L+LS   I  + D +F+GL +L+ L L
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378

Query: 179 DNNKITTISGS--NILPTGLHGIDLHHNPWTCDCLLIG-LRRWLESTKTPMAIDPICSVP 235
           D N++ ++     + L + L  I LH NPW C C  I  L RWL            CS  
Sbjct: 379 DTNQLKSVPDGIFDRLTS-LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 437

Query: 236 PR 237
            +
Sbjct: 438 GK 439

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  135 bits (341), Expect = 5e-34
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 23/243 (9%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
             + C            C+N+ L   V  +  +   +D + N++  L+   F    L +L
Sbjct: 4   GTSECSV----IGYNAICINRGL-HQVPELPAHVNYVDLSLNSIAELNETSFS--RLQDL 56

Query: 78  QKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
           Q + + +     VI +  FRGL++L+ L   +N    + +  F    +L  LTL+   + 
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

Query: 137 --QIKTGAFQPLSYLVTLELSKCGIEVIE-DAAFVGLDSLEWLKLDNNKITTISGSNILP 193
              +    F+PL+ L  L L    I+ I+  + F+ +     L L  NK+ +I   ++L 
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176

Query: 194 -TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELA 252
             G H   L  +  T   +      W +           C  P + +S+T   LS +   
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEK-----------CGNPFKNTSITTLDLSGNGFK 225

Query: 253 CEP 255
              
Sbjct: 226 ESM 228

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 36/207 (17%), Positives = 57/207 (27%), Gaps = 53/207 (25%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLV------ 102
            + ++L    NN+K +    F    +     + L+  ++  I  +               
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187

Query: 103 ----DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPL------------ 146
                 D +   L            S+  L LSGN  K+     F               
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 147 ---------------------------SYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLD 179
                                      S + T +LSK  I  +  + F     LE L L 
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 180 NNKITTISGSNILP--TGLHGIDLHHN 204
            N+I  I   N     T L  ++L  N
Sbjct: 308 QNEINKID-DNAFWGLTHLLKLNLSQN 333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 26/86 (30%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
              +VLD + N+++ L ++                          +F GL NL +L    
Sbjct: 347 DKLEVLDLSYNHIRALGDQ--------------------------SFLGLPNLKELALDT 380

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNP 134
           N L++VP   F    SL K+ L  NP
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  141 bits (358), Expect = 5e-36
 Identities = 45/228 (19%), Positives = 74/228 (32%), Gaps = 9/228 (3%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
           P+ + L    NN+  +   + Q       + IYL+  +I+++        + +  LD   
Sbjct: 99  PSIETLHAANNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 109 NVLQTVPSDTFPDY-PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
           N + TV          +L  L L  N I  +K       + L TL+LS   +  +    F
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-F 210

Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMA 227
                + W+ L NNK+  I  +      L   DL  N + C  L     +          
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 228 IDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLL 275
                +                   CE    P    L   + K  +LL
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (294), Expect = 7e-28
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 24/175 (13%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
              ++   T ++LK       Q     N++++ LS   +S I +      T L  L+ S 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 109 NVLQTVPS-----------------DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT 151
           NVL                            PS+  L  + N I ++     Q       
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ---GKKN 124

Query: 152 LELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHN 204
           + L+   I ++ D        +++L L  N+I T++ + +      L  ++L +N
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 9/131 (6%)

Query: 74  LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN 133
               +   ++   +    +   +   N+ +LD S N L  + +     +  L  L LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 134 PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP 193
            + +      + LS L TL+L+   ++ +         S+E L   NN I+ +S S    
Sbjct: 69  VLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRG-- 119

Query: 194 TGLHGIDLHHN 204
            G   I L +N
Sbjct: 120 QGKKNIYLANN 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.6 bits (217), Expect = 3e-18
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 95  FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154
            +          + + L+   +       ++ +L LSGNP+ QI      P + L  L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
           S   +    D     L +L  L L+NN +  +         +  +   +N
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN 109

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 116 SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175
            +   +        ++ + +KQ      Q    +  L+LS   +  I  A       LE 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 176 LKLDNNKITTISGSNILPTGLHGIDLHHN 204
           L L +N +        L T L  +DL++N
Sbjct: 63  LNLSSNVLYETLDLESLST-LRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 13/161 (8%), Positives = 37/161 (22%), Gaps = 4/161 (2%)

Query: 50  NTQVLDYTGNNLKTLHNEKFQKMG---LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106
           N +V       +K L  +  ++     L +              D            L  
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320

Query: 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAA 166
             +  + +  +   +     ++       + +           +TLE  K  ++      
Sbjct: 321 QGSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 167 FVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
                 L+           +  +    + L  +      + 
Sbjct: 380 RRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 20/151 (13%), Positives = 48/151 (31%), Gaps = 5/151 (3%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
               +L   G+  + L  E+         ++I   + +   +  +        + L+   
Sbjct: 313 KEHALLSGQGSETERLECEREN---QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGI-EVIEDAAF 167
             L    S+    +  L           +++  A +  S L  L        E+  +   
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRYEEMYVEQQS 428

Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHG 198
           V  +++    +  +K T ++  N     L+G
Sbjct: 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNG 459

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  142 bits (360), Expect = 8e-36
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 4/156 (2%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
            N +++ +  + ++ L            ++ + L+  +I  ID+ AF     +  L    
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
           N ++ +P   F + P L  L L  N +  +  G F     L TL +S   +E IED  F 
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168

Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
              SL+ L+L +N++T +  S  L   L   ++ +N
Sbjct: 169 ATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYN 202

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (309), Expect = 2e-29
 Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 3/180 (1%)

Query: 28  GGKQT--VECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRC 85
           GG+Q   V+        +   +  +    D   +         F+ + L N + +     
Sbjct: 2   GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61

Query: 86  RISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP 145
            +  + +        +  L+ +   ++ + +  F    ++ KL +  N I+ +    FQ 
Sbjct: 62  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 146 LSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHN 204
           +  L  L L +  +  +    F     L  L + NN +  I        T L  + L  N
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (309), Expect = 2e-29
 Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 36/213 (16%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
           P+    + + N L TL          + ++++  S   I+V+       LT    L   H
Sbjct: 192 PSLFHANVSYNLLSTLAI-------PIAVEELDASHNSINVVRGPVNVELT---ILKLQH 241

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
           N L         +YP L+++ LS N +++I    F  +  L  L +S   +  + +    
Sbjct: 242 NNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQ 298

Query: 169 GLDSLEWLKLDNNKITTISGS--------------NILPT-------GLHGIDLHHNPWT 207
            + +L+ L L +N +  +  +              N + T        L  + L HN W 
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358

Query: 208 CDCLLIGLRRWLESTKTPMAIDPICSVPPRLSS 240
           C+ L    R            D  C +  +L  
Sbjct: 359 CNSLRALFRNVARP--AVDDADQHCKIDYQLEH 389

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  140 bits (355), Expect = 3e-35
 Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 14/191 (7%)

Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
           +C  S +C         +  ++S  ++  G+    + LD + N +  + +   +     N
Sbjct: 3   SCDASGVC---------DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLR--ACAN 51

Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
           LQ + L   RI+ I+  AF  L +L  LD S N L ++ S  F    SL  L L GNP +
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 137 QI-KTGAFQPLSYLVTLELSKC-GIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP- 193
            +  T  F  L+ L TL +        I    F GL SL  L++    +      ++   
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 194 TGLHGIDLHHN 204
             +H + LH +
Sbjct: 172 RDIHHLTLHLS 182

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (327), Expect = 9e-32
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 12/191 (6%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
           P+ Q L  + N+L+++       + L NL  + +SR     +   + +    +  L+ S 
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSS 419

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
             ++ V +       +L  L +S N +          L  L  L +S+  ++ + DA+  
Sbjct: 420 TGIRVVKTCIPQ---TLEVLDVSNNNLDSFSLF----LPRLQELYISRNKLKTLPDASL- 471

Query: 169 GLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWTCDCLLIG-LRRWLESTKTPM 226
               L  +K+  N++ ++        T L  I LH NPW C C  I  L RWL       
Sbjct: 472 -FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 530

Query: 227 AIDPICSVPPR 237
                CS   +
Sbjct: 531 QGSAKCSGSGK 541

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (262), Expect = 1e-23
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 11/167 (6%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQ------KMGLVNLQKIYLSRCRISVIDSKAFRGLTNLV 102
              +  D T N L   +  +        K+  V ++++++ +  +    S  +  L  + 
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 103 DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK---TGAFQPLSYLVTLELSKCGI 159
            +   ++ +  VP        SL  L LS N + +     +        L TL LS+  +
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 160 EVIEDAA--FVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
             ++      + L +L  L +  N    +  S   P  +  ++L   
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST 420

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (258), Expect = 3e-23
 Identities = 43/217 (19%), Positives = 78/217 (35%), Gaps = 11/217 (5%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRC-RISVIDSKAFRGLTNLVDLDFS 107
            + + L+  GN  +TL         L NLQ + +      S I    F GLT+L +L+  
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
              L+   S +      +  LTL  +    +       LS +  LEL    +   + +  
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 168 VGLDSLEWLKLDNNKITTIS-GSNILPTGLHGIDLHHNPWTC-DCLLIGLRRWLESTKTP 225
              +    +K    + + ++  S      L    L  +     DC L GL  +  S    
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 226 MAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTF 262
           +      S   ++ +VTI++L I +         + +
Sbjct: 277 V------SELGKVETVTIRRLHIPQFY-LFYDLSTVY 306

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.9 bits (218), Expect = 3e-18
 Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 11/166 (6%)

Query: 50  NTQVLDYTGNNLKTL-----HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDL 104
            + + D + N L  L        + +            +     V+          +  L
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 105 DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIE---V 161
                 L    S  +     + ++T+  + +  +     Q L  L  L+LS+  +    +
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 162 IEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHG---IDLHHN 204
              A      SL+ L L  N + ++  +  +   L     +D+  N
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  133 bits (337), Expect = 2e-34
 Identities = 43/217 (19%), Positives = 78/217 (35%), Gaps = 32/217 (14%)

Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM---- 72
            C    IC      +   C    +  +   +  N   L +    L+ +    F       
Sbjct: 1   GCH-HRICHCSN--RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 57

Query: 73  -------------------GLVNLQKIYLSRC-RISVIDSKAFRGLTNLVDLDFSHNVLQ 112
                               L  L +I + +   +  I+ +AF+ L NL  L  S+  ++
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 113 TVPSDTFPDYPSLMKLTLSGNP-IKQIKTGAFQPLSY-LVTLELSKCGIEVIEDAAFVGL 170
            +P          + L +  N  I  I+  +F  LS+  V L L+K GI+ I ++AF G 
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177

Query: 171 DSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNP 205
              E    DNN +  +  +++    +G   +D+    
Sbjct: 178 QLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTR 213

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 88.3 bits (219), Expect = 5e-19
 Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 30/176 (17%)

Query: 49  PNTQVLDYTGNN-LKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
               +LD   N  + T+    F  +       ++L++  I  I + AF G          
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
           +N L+ +P+D F      + L +S   I  + +   + L  L         ++ +     
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLP--TL 242

Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTK 223
             L +L    L                          P  C       R+  E   
Sbjct: 243 EKLVALMEASLT------------------------YPSHCCAFANWRRQISELHP 274

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  131 bits (332), Expect = 1e-33
 Identities = 46/341 (13%), Positives = 88/341 (25%), Gaps = 112/341 (32%)

Query: 4   WIFLIATIIKIVSA----CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVL----- 54
           W+  +  +I  +S        S  C         +  + SL ++  G+    + L     
Sbjct: 6   WMVWVLGVIISLSKEESSNQASLSC---DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNN 62

Query: 55  -------------------DYTGNNLKTLHNEKFQKM----------------------G 73
                                T N + T+  + F  +                       
Sbjct: 63  RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122

Query: 74  LVNLQKIYLSRCRISVI-DSKAFRGLTNLVDLDFSHNV-LQTVPSDTFPDYPSLMKLTLS 131
           L +L  + L       + ++  F  LT L  L   +      +    F     L +L + 
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 132 GNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI 191
            + ++  +  + + +  +  L L      ++ +       S+E L+L +  + T   S +
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 192 LP--------------------------------TGLHGIDLHH---------------- 203
                                             +GL  ++                   
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS 302

Query: 204 --------NPWTCDCLLIG-LRRWLESTKTPMAIDPICSVP 235
                   NPW C C  I  L RWL            CS  
Sbjct: 303 LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 343

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  130 bits (330), Expect = 2e-33
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 7/168 (4%)

Query: 40  LITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRI--SVIDSKAFRG 97
           L  + E M    Q L    N +  +    F   GL  +  + L    +  S I++ AF+G
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 98  LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC 157
           +  L  +  +   + T+P    P   SL +L L GN I ++   + + L+ L  L LS  
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
            I  +++ +      L  L L+NNK+  + G       +  + LH+N 
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  126 bits (319), Expect = 4e-32
 Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 15/172 (8%)

Query: 49  PNTQVLDYTGNNLKT--LHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106
               V++   N LK+  + N  FQ  G+  L  I ++   I+ I       LT L     
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQ--GMKKLSYIRIADTNITTIPQGLPPSLTEL---HL 199

Query: 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAA 166
             N +  V + +     +L KL LS N I  +  G+     +L  L L+   +  +    
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GG 258

Query: 167 FVGLDSLEWLKLDNNKITTISGSNILPTG-------LHGIDLHHNPWTCDCL 211
                 ++ + L NN I+ I  ++  P G         G+ L  NP     +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (289), Expect = 4e-28
 Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 57/213 (26%)

Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
             CP  C C      + V+C +  L  V + + P+T +LD                    
Sbjct: 23  PVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLD-------------------- 58

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
                 L   +I+ I    F+ L NL  L   +N +  +    F     L +L LS N +
Sbjct: 59  ------LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITT---------- 185
           K++     + L     L + +  I  +  + F GL+ +  ++L  N + +          
Sbjct: 113 KELPEKMPKTLQE---LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 186 --------ISGSNI------LPTGLHGIDLHHN 204
                   I+ +NI      LP  L  + L  N
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 18/140 (12%), Positives = 47/140 (33%), Gaps = 31/140 (22%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
            N   L  + N++  + N         +L++++L+  ++  +          +  +   +
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLA--NTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHN 272

Query: 109 NVLQTVPSDTFP------DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI 162
           N +  + S+ F          S   ++L  NP++  +                      I
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE----------------------I 310

Query: 163 EDAAFVGLDSLEWLKLDNNK 182
           + + F  +     ++L N K
Sbjct: 311 QPSTFRCVYVRAAVQLGNYK 330

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  135 bits (342), Expect = 5e-33
 Identities = 41/199 (20%), Positives = 84/199 (42%), Gaps = 4/199 (2%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
            +     +  +N+K      F  +   +++ + LS   +  ++S+ F  L +L  L+ ++
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
           N +  +  + F    +L  L LS N + ++ +  F  L  +  ++L K  I +I+D  F 
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAI 228
            L+ L+ L L +N +TTI     +P     I L  N       +      +  ++  +  
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPD----IFLSGNKLVTLPKINLTANLIHLSENRLEN 415

Query: 229 DPICSVPPRLSSVTIKQLS 247
             I     R+  + I  L+
Sbjct: 416 LDILYFLLRVPHLQILILN 434

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  128 bits (324), Expect = 8e-31
 Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 36/248 (14%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF-RGLTNLVDLDFS 107
           P+   +  +GN L TL               I+LS  R+  +D   F   + +L  L  +
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLT------ANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 108 HNVLQTVPSD-TFPDYPSLMKLTLSGNPIK-----QIKTGAFQPLSYLVTLELSKCGIEV 161
            N   +   D T  + PSL +L L  N ++     ++    F+ LS+L  L L+   +  
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 162 IEDAAFVGLDSLEWLKLDNNKITTISGSNILP--------------------TGLHGIDL 201
           +    F  L +L  L L++N++T +S +++                        L  +D+
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDI 554

Query: 202 HHNPWTCDCLLIGLRRWLESTKTPMAIDP---ICSVPPRLSSVTIKQLSIDELACEPQIT 258
            HN + C+C L     WL  T   +A  P    C  P   S V++  LS +    E  + 
Sbjct: 555 THNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLK 614

Query: 259 PSTFYLEI 266
              F L I
Sbjct: 615 SLKFSLFI 622

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (309), Expect = 6e-29
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 10/182 (5%)

Query: 31  QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV- 89
           +       +L  V + +   T+ L  + N ++T+    F    L  LQ + L      + 
Sbjct: 7   RIAFYRFCNLTQVPQVL-NTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLT 63

Query: 90  IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ--IKTGAFQPLS 147
           ID +AFR L NL  LD   + +  +  D F     L +L L    +    +K G F+ L 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 148 YLVTLELSKCGIEVIE-DAAFVGLDSLEWLKLDNNKITTISG---SNILPTGLHGIDLHH 203
            L  L+LSK  I  +    +F  L+SL+ +   +N+I  +       +    L    L  
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 204 NP 205
           N 
Sbjct: 184 NS 185

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (257), Expect = 9e-23
 Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 14/166 (8%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRIS--VIDSKAFRGLTNLVDLDF 106
           PN ++LD   + +  LH + FQ  GL +L ++ L  C +S  V+    FR L  L  LD 
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 107 SHNVLQTVP-SDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS--YLVTLELSKCGIEVIE 163
           S N ++++    +F    SL  +  S N I  +     +PL    L    L+   +    
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 164 DAAFVGLD------SLEWLKLDNNKITTISGSNILPTGLHGIDLHH 203
              +           LE L +  N  T    +      +       
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDI-TGNFSNAISKSQAFS 235

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (255), Expect = 2e-22
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 21/176 (11%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMG----LVNLQKIYLSRCRISVIDSKAF--------- 95
                     N+L +  +  + K       + L+ + +S    +V  +  F         
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 96  ---RGLTNLVDLDFSHNVLQTVPSDTFPDYP--SLMKLTLSGNPIKQIKTGAFQPLSYLV 150
                  +++   F  + ++    +TF      S+  L LS   +  + +  F+ L  L 
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293

Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI--LPTGLHGIDLHHN 204
            L L+   I  I D AF GLD+L+ L L  N +  +  SN   LP  +  IDL  N
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKN 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  131 bits (331), Expect = 5e-32
 Identities = 41/209 (19%), Positives = 67/209 (32%), Gaps = 30/209 (14%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRI-SVIDSKAFRGLTNLVDLDFS 107
                LD +  N K   +  F   GL +L  + ++         S  F   TNL  LD S
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFL--GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
              L+ +    F     L  L +S N +  + +  +  L  L TL+ S   IE  +    
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKT--P 225
               SL +                         L +N   C C      +W++  K    
Sbjct: 542 HFPKSLAFFN-----------------------LTNNSVACICEHQKFLQWVKEQKQFLV 578

Query: 226 MAIDPICSVPPRLSSVTIKQLSIDELACE 254
                 C+ P  +++  +  L  +   C 
Sbjct: 579 NVEQMTCATPVEMNTSLV--LDFNNSTCY 605

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  121 bits (306), Expect = 7e-29
 Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 30/190 (15%)

Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
                CI        T +C+++ L  V + +  +T+ +D                     
Sbjct: 2   GSLNPCIEVVPNI--TYQCMDQKLSKVPDDIPSSTKNID--------------------- 38

Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
                LS   + ++ S +F   + L  LD S   ++T+    +     L  L L+GNPI+
Sbjct: 39  -----LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--T 194
               G+F  L+ L  L   +  +  +E      L +L+ L + +N I +          T
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 195 GLHGIDLHHN 204
            L  +DL +N
Sbjct: 154 NLVHVDLSYN 163

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (304), Expect = 1e-28
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 10/161 (6%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR--GLTNLVDLDF 106
           P  + L  T N       +    + L +L  + LSR  +S     ++   G  +L  LD 
Sbjct: 328 PFLKSLTLTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCGIEVIEDA 165
           S N    + +  F     L  L    + +K++ +  AF  L  L+ L++S    ++  D 
Sbjct: 384 SFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 166 AFVGLDSLEWLKLDNNKITTISGSNIL--PTGLHGIDLHHN 204
            F+GL SL  LK+  N     + SN+    T L  +DL   
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (250), Expect = 5e-22
 Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 11/157 (7%)

Query: 50  NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109
                  T  N  +    KF    L N+  + L+   I  ++            L     
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFH--CLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRC 317

Query: 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF-- 167
            L+  P+      P L  LTL+ N            L  L  L+LS+  +      ++  
Sbjct: 318 QLKQFPTLDL---PFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
           +G +SL  L L  N    +S + +    L  +D  H+
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.0 bits (247), Expect = 1e-21
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 10/149 (6%)

Query: 59  NNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDT 118
            NL+       + +  V + +  L+       D   F  L N+  +  +   ++ +    
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304

Query: 119 FPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKL 178
              +     L++    +KQ        L +L +L L+     +      V L SL +L L
Sbjct: 305 K--HFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL 357

Query: 179 DNNKITTI---SGSNILPTGLHGIDLHHN 204
             N ++     S S++    L  +DL  N
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  122 bits (307), Expect = 2e-30
 Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 9/173 (5%)

Query: 37  NKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRI--SVIDSKA 94
           N  L+ +   +  +   L    N ++ +    F   GL N+  I +    +  S  +  A
Sbjct: 112 NH-LVEIPPNLPSSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGA 168

Query: 95  FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154
           F GL  L  L  S   L  +P D      +L +L L  N I+ I+       S L  L L
Sbjct: 169 FDGL-KLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224

Query: 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
               I +IE+ +   L +L  L LDNNK++ +         L  + LH N  T
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  114 bits (288), Expect = 5e-28
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 16/169 (9%)

Query: 49  PNTQVLDYTGNNLK--TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106
            N   ++  GN L+        F  +    L  + +S  +++ I       L  L     
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGL---KLNYLRISEAKLTGIPKDLPETLNEL---HL 200

Query: 107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAA 166
            HN +Q +  +    Y  L +L L  N I+ I+ G+   L  L  L L    +  +  A 
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AG 259

Query: 167 FVGLDSLEWLKLDNNKITTISGSNILPTG-------LHGIDLHHNPWTC 208
              L  L+ + L  N IT +  ++  P G        +GI L +NP   
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (285), Expect = 1e-27
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 43/195 (22%)

Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
           + CP  C C      + V+C +  L  V + + P+T +LD                    
Sbjct: 25  AMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLD-------------------- 60

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
                 L    IS +    F+GL +L  L   +N +  +    F     L KL +S N +
Sbjct: 61  ------LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
            +I          LV L +    I  +    F GL ++  +++  N +           G
Sbjct: 115 VEIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG----FEPG 167

Query: 196 ------LHGIDLHHN 204
                 L+ + +   
Sbjct: 168 AFDGLKLNYLRISEA 182

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  110 bits (278), Expect = 1e-26
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 11/151 (7%)

Query: 40  LITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT 99
           L  + + +      L    N ++ +  E         L ++ L   +I +I++ +   L 
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPL------SYLVTLE 153
            L +L   +N L  VP+   PD   L  + L  N I ++    F P+      +Y   + 
Sbjct: 242 TLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

Query: 154 LS--KCGIEVIEDAAFVGLDSLEWLKLDNNK 182
           L         ++ A F  +     ++  N K
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  116 bits (294), Expect = 3e-29
 Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 32/188 (17%)

Query: 19  PTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQ 78
           P   +        T +C+  +   + + +  +T+ LD + N                   
Sbjct: 2   PCVEVV----PNITYQCMELNFYKIPDNLPFSTKNLDLSFNP------------------ 39

Query: 79  KIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQI 138
                   +  + S +F     L  LD S   +QT+    +     L  L L+GNPI+ +
Sbjct: 40  --------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 139 KTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGL 196
             GAF  LS L  L   +  +  +E+     L +L+ L + +N I +          T L
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 197 HGIDLHHN 204
             +DL  N
Sbjct: 152 EHLDLSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  111 bits (281), Expect = 1e-27
 Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 32/193 (16%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS-KAFRGLTNLVDLDFS 107
            + Q L     NL +L N       L  L+++ ++   I      + F  LTNL  LD S
Sbjct: 100 SSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 108 HNVLQTVPSDTFPDYPSL----MKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE 163
            N +Q++          +    + L LS NP+  I+ GAF+ +  L  L L    ++ + 
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVP 216

Query: 164 DAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIG-LRRWLEST 222
           D  F  L SL+                        I LH NPW C C  I  L RWL   
Sbjct: 217 DGIFDRLTSLQK-----------------------IWLHTNPWDCSCPRIDYLSRWLNKN 253

Query: 223 KTPMAIDPICSVP 235
                    CS  
Sbjct: 254 SQKEQGSAKCSGS 266

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  114 bits (287), Expect = 9e-29
 Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 36/196 (18%)

Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGL 74
           +      C C     ++      K +   +  + P+TQ L                    
Sbjct: 1   MGCSSPPCECH---QEEDFRVTCKDI-QRIPSLPPSTQTLK------------------- 37

Query: 75  VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNV-LQTVPSDTFPDYPSLMKLTLSGN 133
                  L    +  I S AF  L N+  +  S +V LQ + S +F +   +  + +   
Sbjct: 38  -------LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 134 P-IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV-GLDSLEWLKL-DNNKITTISGS- 189
             +  I   A + L  L  L +   G+++  D   V   D    L++ DN  +T+I  + 
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 190 -NILPTGLHGIDLHHN 204
              L      + L++N
Sbjct: 151 FQGLCNETLTLKLYNN 166

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  108 bits (272), Expect = 1e-26
 Identities = 57/228 (25%), Positives = 88/228 (38%), Gaps = 46/228 (20%)

Query: 15  VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM-- 72
           +  C T   C    GK+ V+C  KSL +V  G+  +T+ LD     L TL +  F+ +  
Sbjct: 1   MKTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTK 60

Query: 73  --------------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ 112
                                L  L  + L+  +++ +    F  LT L  L    N L+
Sbjct: 61  LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120

Query: 113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDS 172
           ++PS  F     L +L L+ N ++ I  GAF  L+ L TL LS   ++ +   AF  L  
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180

Query: 173 LEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIG-LRRWL 219
           L+                        I L  N + C    I  L +W+
Sbjct: 181 LQT-----------------------ITLFGNQFDCSRCEILYLSQWI 205

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (284), Expect = 3e-26
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 29/213 (13%)

Query: 22  CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM--------- 72
           C+        T +C+  +   + + +  +T+ LD + N L+ L +  F            
Sbjct: 3   CVEVVPNI--TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 73  -------------GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTF 119
                         L +L  + L+   I  +   AF GL++L  L      L ++ +   
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 120 PDYPSLMKLTLSGNPIKQIKTG-AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW--- 175
               +L +L ++ N I+  K    F  L+ L  L+LS   I+ I       L  +     
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 176 -LKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
            L L  N +  I         LH + L +N  +
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (260), Expect = 3e-23
 Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 10/171 (5%)

Query: 39  SLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID--SKAFR 96
                      + + L +T N         F ++ L +L+ + LSR  +S     S++  
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKG----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 97  GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ-IKTGAFQPLSYLVTLELS 155
           G T+L  LD S N + T+ S+ F     L  L    + +KQ  +   F  L  L+ L++S
Sbjct: 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHN 204
                V  +  F GL SLE LK+  N        +I      L  +DL   
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (251), Expect = 4e-22
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 51/204 (25%)

Query: 49  PNTQVLDYTGNNLK-TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
            + +VL   GN+ +     + F    L NL  + LS+C++  +   AF  L++L  L+ S
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
           HN   ++ +  +    SL  L  S N I   K    Q                       
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH---------------------- 540

Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKT--P 225
                                    P+ L  ++L  N + C C      +W++  +    
Sbjct: 541 ------------------------FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576

Query: 226 MAIDPICSVPPRLSSVTIKQLSID 249
                 C+ P     + +  L+I 
Sbjct: 577 EVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.4 bits (230), Expect = 1e-19
 Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 13/166 (7%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID-SKAFRGLTNLVDLDFS 107
            + Q L     NL +L N       L  L+++ ++   I      + F  LTNL  LD S
Sbjct: 100 SSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 108 HNVLQTVPSDTFPDYPSL----MKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEV-I 162
            N +Q++          +    + L LS NP+  I+ GAF+ +  L  L L      + +
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNV 216

Query: 163 EDAAFVGLDSLEWLKLDNNKITTISGSNILP----TGLHGIDLHHN 204
                 GL  LE  +L   +                GL  + +   
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 1e-16
 Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 28/179 (15%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR------------ 96
            N          ++ + +  +        Q + L  C+     +   +            
Sbjct: 282 TNVSSFSLVSVTIERVKDFSY----NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337

Query: 97  -------GLTNLVDLDFSHNVLQ--TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS 147
                   L +L  LD S N L      S +     SL  L LS N +  + +  F  L 
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLE 396

Query: 148 YLVTLELSKCGIE-VIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHN 204
            L  L+     ++ + E + F+ L +L +L + +              + L  + +  N
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 10/159 (6%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKM-GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
            N  + ++    L    ++       L N+    L    I  +   ++        L+  
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELV 312

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE--DA 165
           +      P+        L   +  G         +   L  L  L+LS+ G+        
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 166 AFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
           +  G  SL++L L  N + T+S + +    L  +D  H+
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 95.5 bits (238), Expect = 1e-22
 Identities = 53/245 (21%), Positives = 81/245 (33%), Gaps = 69/245 (28%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
           CP  C C+      TV+C  + L  +   +  +T  L    N L  + ++          
Sbjct: 2   CPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG--------- 48

Query: 78  QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
                            F  L +LV L+   N L  +  + F     + +L L  N IK+
Sbjct: 49  ----------------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG-- 195
           I    F                         GL  L+ L L +N+I+ +        G  
Sbjct: 93  ISNKMFL------------------------GLHQLKTLNLYDNQISCV------MPGSF 122

Query: 196 -----LHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAID-PICSVPPRLSSVTIKQLSID 249
                L  ++L  NP+ C+C L     WL   K  +      C  P ++  V IK L   
Sbjct: 123 EHLNSLTSLNLASNPFNCNCHLAWFAEWLR--KKSLNGGAARCGAPSKVRDVQIKDLPHS 180

Query: 250 ELACE 254
           E  C 
Sbjct: 181 EFKCS 185

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =   99 bits (249), Expect = 9e-22
 Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 18/167 (10%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
            +LD   N ++ L    F     V L  + L   +I  I          +  L FSHN L
Sbjct: 576 GLLDCVHNKVRHLEA--FG--TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631

Query: 112 QTVPSDT-FPDYPSLMKLTLSGNPIKQIKTGAFQPLSY-----LVTLELSKCGIEVIEDA 165
           + +P+         +  +  S N I          +         T+ LS   I+     
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 166 AFVGLDSLEWLKLDNNKITTISGSNILP--------TGLHGIDLHHN 204
            F     +  + L NN +T+I  +++ P          L  IDL  N
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.6 bits (230), Expect = 2e-19
 Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 19/170 (11%)

Query: 50  NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI-------DSKAFRGLTNLV 102
           N   +  + N ++    E F       +  I LS   ++ I           ++    L 
Sbjct: 674 NASTVTLSYNEIQKFPTELFAT--GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 103 DLDFSHNVLQTVPSD-TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC---- 157
            +D   N L ++  D      P L  + +S N      T      S L    +       
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDAE 790

Query: 158 --GIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
              I            SL  L++ +N I  +     L   L+ +D+  NP
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK--LTPQLYILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 90.7 bits (225), Expect = 7e-19
 Identities = 27/181 (14%), Positives = 62/181 (34%), Gaps = 19/181 (10%)

Query: 52  QVLDYTGNNLKTLHNEKFQKM-----GLVNLQKIYLSRCRISVI-DSKAFRGLTNLVDLD 105
             +  + N + ++     +           L  I L   +++ + D      L  L ++D
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 106 FSHNVLQTVPSDTFPDYPSLMKLTL------SGNPIKQIKTGAFQPLSYLVTLELSKCGI 159
            S+N   + P+    +   L    +       GN I +           L+ L++    I
Sbjct: 760 VSYNCFSSFPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP---TGLHGIDLHHNPWTCDCLLIGLR 216
             +++        L  L + +N   +I  +++ P    G++ +          C  +G+ 
Sbjct: 819 RKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

Query: 217 R 217
           R
Sbjct: 876 R 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 5e-17
 Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 15/166 (9%)

Query: 50  NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109
           + +  +             +    L +L  + L  C            L  L  L+ + N
Sbjct: 468 DWEDANSDYAKQYENEELSWS--NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525

Query: 110 VLQTVPS---------DTFPDYPSLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCGI 159
              +            D     P +    +  N +++   + + Q +  L  L+     +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTI-SGSNILPTGLHGIDLHHN 204
             +E  AF     L  LKLD N+I  I          + G+   HN
Sbjct: 586 RHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 5e-14
 Identities = 26/180 (14%), Positives = 51/180 (28%), Gaps = 33/180 (18%)

Query: 54  LDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI-------------------DSKA 94
           +    N +  +     Q+  L  LQ IY +    +                     +  +
Sbjct: 430 IGNLTNRITFISKA-IQR--LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486

Query: 95  FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK---------TGAFQP 145
           +  L +L D++  +    T   D   D P L  L ++ N                     
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 146 LSYLVTLELSKCGIEVI-EDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
              +    +    +E     A+   +  L  L   +NK+  +         L  + L +N
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN-VKLTDLKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 19/172 (11%)

Query: 46  GMDPNTQVLDYTGNNLKTLHNEKF-QKMGLVNLQKIYLSRC--RISVIDSKAFRGLTNLV 102
             D    + D   + +      K  +K   ++L+   +     RI+ I SKA + LT L 
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQ 451

Query: 103 DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI 162
            + F+++                           + +  ++  L  L  +EL  C     
Sbjct: 452 IIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 163 EDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHG----------IDLHHN 204
                  L  L+ L +  N+  + +      T L              + +N
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 8e-09
 Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 6/152 (3%)

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
            +  + L+          A   LT L  L F  +           +  +        + I
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 136 K-QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLK-----LDNNKITTISGS 189
           +   K         L   +L +  I    +   +  DS   LK        N+IT IS +
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443

Query: 190 NILPTGLHGIDLHHNPWTCDCLLIGLRRWLES 221
               T L  I   ++P+T D + +        
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 27/189 (14%), Positives = 49/189 (25%), Gaps = 26/189 (13%)

Query: 23  ICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYL 82
           +  W G +  V+  N   +T           L   G   K    +   +  L  L+ +  
Sbjct: 308 LDMW-GDQPGVDLDNNGRVTG----------LSLAGFGAKGRVPDAIGQ--LTELKVLSF 354

Query: 83  SRCRISVIDSKAF-RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN------PI 135
                +V         LT  +  +  H +              L    L  +       +
Sbjct: 355 GTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
           K IK  +   L     +      I  I   A   L  L+ +   N+  T       +   
Sbjct: 415 KPIKKDSRISLKDT-QIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYD----NIAVD 468

Query: 196 LHGIDLHHN 204
               +  + 
Sbjct: 469 WEDANSDYA 477

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 12/123 (9%), Positives = 21/123 (17%), Gaps = 2/123 (1%)

Query: 83  SRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA 142
                             +  L  +    +    D       L  L+   +         
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 143 FQPLSYLVTLELSKCGIEV-IEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDL 201
                     E  K  I +  +         L    L  + I        +      I L
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK-DSRISL 425

Query: 202 HHN 204
              
Sbjct: 426 KDT 428

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 97.2 bits (242), Expect = 3e-21
 Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 28/189 (14%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK-AFRGLTNLVDLDFS 107
              + L    N LK L         + +LQ++ +S+  +S  + K       +L+ L+ S
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
            N+L        P  P +  L L  N IK I     + L  L  L ++   ++ + D  F
Sbjct: 408 SNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIF 464

Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIG-LRRWLESTKTPM 226
             L SL+ +                        LH NPW C C  I  L RWL       
Sbjct: 465 DRLTSLQKI-----------------------WLHTNPWDCSCPRIDYLSRWLNKNSQKE 501

Query: 227 AIDPICSVP 235
                CS  
Sbjct: 502 QGSAKCSGS 510

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 90.7 bits (225), Expect = 4e-19
 Identities = 45/262 (17%), Positives = 82/262 (31%), Gaps = 32/262 (12%)

Query: 30  KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV 89
           +  V+     LI V + +   T +L+ + N                           IS 
Sbjct: 2   EFLVDRSKNGLIHVPKDLSQKTTILNISQNY--------------------------ISE 35

Query: 90  IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYL 149
           + +     L+ L  L  SHN +Q +    F     L  L LS N + +I   +  P   L
Sbjct: 36  LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNL 92

Query: 150 VTLELSKCGIEVI-EDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTC 208
             L+LS    + +     F  +  L++L L    +   S   I    +  + L       
Sbjct: 93  KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 209 DCLLIGL--RRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEI 266
           +            ES       +        +S  T+  L +  + C  +    +++L I
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 267 QEGKNVSLLCKVSAIPEAKITW 288
                 +       +   + TW
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTW 234

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.0 bits (174), Expect = 6e-13
 Identities = 28/202 (13%), Positives = 67/202 (33%), Gaps = 12/202 (5%)

Query: 34  ECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHN---EKFQKMGLVNLQKIYLSRCRI--- 87
           +      ++++  +  N ++ + T NN++T  N      Q +    +    +S  ++   
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262

Query: 88  --SVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP 145
                   +   L  L       +V     S  +  + ++     + +  + +       
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 146 LSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI---SGSNILPTGLHGIDLH 202
           +S  + L+ S   +          L  LE L L  N++  +   +        L  +D+ 
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 203 HNPWTCDCLLIGLRRWLESTKT 224
            N  + D    G   W +S  +
Sbjct: 383 QNSVSYD-EKKGDCSWTKSLLS 403

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 43  VVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLV 102
           +   + P  +VLD   N +K++  +  +   L  LQ++ ++  ++  +    F  LT+L 
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSIPKQVVK---LEALQELNVASNQLKSVPDGIFDRLTSLQ 471

Query: 103 DLDFSHN 109
            +    N
Sbjct: 472 KIWLHTN 478

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 89.7 bits (223), Expect = 9e-21
 Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 54/204 (26%)

Query: 16  SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
           S CPT C C        V C NK L  + +G+  +   L   GN    +           
Sbjct: 2   SRCPTECTC----LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLV----------- 46

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
                            K      +L  +D S+N + T+ + +F +   L+ L LS N +
Sbjct: 47  ----------------PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
           + I    F  L  L  L L    I V+ + AF  L +L                      
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH-------------------- 130

Query: 196 LHGIDLHHNPWTCDCLLIGLRRWL 219
              + +  NP  CDC +  L  W+
Sbjct: 131 ---LAIGANPLYCDCNMQWLSDWV 151

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 15/175 (8%)

Query: 32  TVECVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV 89
             + + K  +T     +   +   +    +++K++     Q   L N+ K++L+  +++ 
Sbjct: 27  IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTD 82

Query: 90  IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYL 149
           I  K    L NL  L    N ++ + S    D   L  L+L  N I  I       L  L
Sbjct: 83  I--KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQL 136

Query: 150 VTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
            +L L    I  I       L  L+ L L++N+I+ I     L   L  + L  N
Sbjct: 137 ESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLAGLTK-LQNLYLSKN 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.8 bits (218), Expect = 3e-19
 Identities = 43/169 (25%), Positives = 60/169 (35%), Gaps = 15/169 (8%)

Query: 41  ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
           I  V+G+   PN   L   GN L  +         L NL  ++L   ++  + S   + L
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLA----NLKNLGWLFLDENKVKDLSS--LKDL 111

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
             L  L   HN +  +        P L  L L  N I  I       L+ L TL L    
Sbjct: 112 KKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQ 167

Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
           I  I      GL  L+ L L  N I+ +     L   L  ++L      
Sbjct: 168 ISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKN-LDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 73  GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG 132
                 K  L +  ++   +     L ++  +  +++ +++V        P++ KL L+G
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 133 NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL 192
           N +  IK      L  L  L L +  ++ +   +   L  L+ L L++N I+ I+G   L
Sbjct: 78  NKLTDIK--PLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 193 PTGLHGIDLHHN 204
              L  + L +N
Sbjct: 134 -PQLESLYLGNN 144

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 116 SDTFPD--YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL 173
              F D  +   +K  L    +    T     L+ +  +  +   I+ ++      L ++
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNV 70

Query: 174 EWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
             L L+ NK+T I     L   L  + L  N
Sbjct: 71  TKLFLNGNKLTDIKPLANLKN-LGWLFLDEN 100

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.2 bits (230), Expect = 2e-20
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 13/167 (7%)

Query: 41  ITVVEGMDPNT--QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
           I  +  +   T         N +  +         +  L  + +   +I+ +       L
Sbjct: 189 IEDISPLASLTSLHYFTAYVNQITDITPVA----NMTRLNSLKIGNNKITDLS--PLANL 242

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
           + L  L+   N +  + +    D   L  L +  N I  I       LS L +L L+   
Sbjct: 243 SQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQ 298

Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
           +   +     GL +L  L L  N IT I     L + +   D  +  
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL-SKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.1 bits (222), Expect = 3e-19
 Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 14/172 (8%)

Query: 35  CVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
            V    +  ++G++   N + L+  GN +  +         LV L  +Y+   +I+ I  
Sbjct: 50  VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLS----NLVKLTNLYIGTNKITDIS- 104

Query: 93  KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
            A + LTNL +L  + + +  +      +   +  L L  N      +     ++ L  L
Sbjct: 105 -ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160

Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
            +++  ++ +       L  L  L L+ N+I  IS    L T LH    + N
Sbjct: 161 TVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISPLASL-TSLHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.4 bits (207), Expect = 2e-17
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 13/153 (8%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
             L      +  +  +      L    +  L +  ++ +       L ++  L  +   +
Sbjct: 3   ATLATLPAPINQIFPDA----DLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKV 56

Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171
            ++         +L  L L+GN I  I       L  L  L +    I  I   A   L 
Sbjct: 57  ASIQG--IEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS--ALQNLT 110

Query: 172 SLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
           +L  L L+ + I+ IS    L T ++ ++L  N
Sbjct: 111 NLRELYLNEDNISDISPLANL-TKMYSLNLGAN 142

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 9e-13
 Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 32/136 (23%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
                L+   N +  +     +   L  L+ + +   +IS I       L+ L  L  ++
Sbjct: 243 SQLTWLEIGTNQISDI--NAVKD--LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNN 296

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
           N L     +      +L  L LS N I  I+                             
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--------------------------PLA 330

Query: 169 GLDSLEWLKLDNNKIT 184
            L  ++     N  I 
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 9e-11
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 41  ITVVEGMDPNT--QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
           I+ +  +   T  ++L+   N +  +         L  L  ++L+  ++   D +   GL
Sbjct: 255 ISDINAVKDLTKLKMLNVGSNQISDISVLN----NLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
           TNL  L  S N +  +          +     +   IK+
Sbjct: 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 125 LMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT 184
              L     PI QI       L+  +   L K  +  +       L+S+  L +   K+ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVA 57

Query: 185 TISGSNILPTGLHGIDLHHN 204
           +I G   L T L  ++L+ N
Sbjct: 58  SIQGIEYL-TNLEYLNLNGN 76

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 88.6 bits (220), Expect = 4e-20
 Identities = 60/210 (28%), Positives = 87/210 (41%), Gaps = 44/210 (20%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
           CP+ C C       TVEC ++   +V  G+   T  LD   N+LK+L             
Sbjct: 1   CPSRCSC----SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSL------------- 43

Query: 78  QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
                         +  F  LT+L  L    N LQ++P+  F    SL  L LS N ++ 
Sbjct: 44  -------------PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG-- 195
           +  G F  L+ L  L L+   ++ + D  F  L  L+ L+L  N++ ++      P G  
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV------PDGVF 144

Query: 196 -----LHGIDLHHNPWTCDCLLIG-LRRWL 219
                L  I LH NPW C C  I  L  W+
Sbjct: 145 DRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 174

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.5 bits (225), Expect = 5e-20
 Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 15/173 (8%)

Query: 35  CVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
               + +T +EG+    N   L+   N +  L   K     L  + ++ LS   +  +  
Sbjct: 47  SAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLK----NLTKITELELSGNPLKNV-- 100

Query: 93  KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
            A  GL ++  LD +   +  V         +L  L L  N I  I       L+ L  L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYL 156

Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
            +    +  +       L  L  LK D+NKI+ IS    L   L  + L +N 
Sbjct: 157 SIGNAQVSDLT--PLANLSKLTTLKADDNKISDISPLASL-PNLIEVHLKNNQ 206

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.5 bits (225), Expect = 6e-20
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 15/172 (8%)

Query: 35  CVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
              KS +T             L   G  + T+  E  Q   L NL  + L   +I+ +  
Sbjct: 25  AAGKSNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQ--YLNNLIGLELKDNQITDLA- 79

Query: 93  KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
              + LT + +L+ S N L+ V +       S+  L L+   I  +       LS L  L
Sbjct: 80  -PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVL 134

Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
            L    I  I      GL +L++L + N +++ ++    L + L  +    N
Sbjct: 135 YLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTPLANL-SKLTTLKADDN 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 13/159 (8%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
                L+ +GN LK +        GL +++ + L+  +I+ +      GL+NL  L    
Sbjct: 85  TKITELELSGNPLKNVSAIA----GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDL 138

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
           N +  +         +L  L++    +  +       LS L TL+     I  I      
Sbjct: 139 NQITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--PLA 192

Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
            L +L  + L NN+I+ +S        L  + L +   T
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLANTSN-LFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 14/149 (9%)

Query: 41  ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
           +  V  +    + + LD T   +  +        GL NLQ +YL   +I+ I      GL
Sbjct: 97  LKNVSAIAGLQSIKTLDLTSTQITDVTPLA----GLSNLQVLYLDLNQITNIS--PLAGL 150

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
           TNL  L   +  +  +      +   L  L    N I  I       L  L+ + L    
Sbjct: 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQ 206

Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTIS 187
           I  +         +L  + L N  IT   
Sbjct: 207 ISDVS--PLANTSNLFIVTLTNQTITNQP 233

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 97  GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK 156
            L N + +    + +      T  D   +  L+  G  +  I+    Q L+ L+ LEL  
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKD 72

Query: 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
             I  +       L  +  L+L  N +  +S    L   +  +DL   
Sbjct: 73  NQITDLA--PLKNLTKITELELSGNPLKNVSAIAGL-QSIKTLDLTST 117

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 10/114 (8%)

Query: 41  ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
           IT +  +    N Q L      +  L         L  L  +     +IS I       L
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLA----NLSKLTTLKADDNKISDIS--PLASL 194

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
            NL+++   +N +  V      +  +L  +TL+   I          L     +
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.9 bits (230), Expect = 1e-19
 Identities = 61/327 (18%), Positives = 106/327 (32%), Gaps = 24/327 (7%)

Query: 32  TVECVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV 89
             + + K  +T     +   +   +    +++K++     Q   L N+ K++L+  +++ 
Sbjct: 24  IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQY--LPNVTKLFLNGNKLTD 79

Query: 90  IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYL 149
           I  K    L NL  L    N ++ + S    D   L  L+L  N I  I       L  L
Sbjct: 80  I--KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQL 133

Query: 150 VTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCD 209
            +L L    I  I       L  L+ L L++N+I+ I     L   L  + L  N  +  
Sbjct: 134 ESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLAGLTK-LQNLYLSKNHISDL 190

Query: 210 CLLIGLR--RWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQ 267
             L GL+    LE         PI      +   T+K      L     I+    Y +  
Sbjct: 191 RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG-SLVTPEIISDDGDYEKPN 249

Query: 268 EGKNVSLLCK------VSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE 321
              ++              +   K    F G   Q      + S+ V  T   T+++   
Sbjct: 250 VKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGT 309

Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSS 348
            +         G        +      
Sbjct: 310 RITAPKPPTKQGYVFKGWYTEKNGGHE 336

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 2e-14
 Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 54  LDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT 113
                  +K +  +           K  L +  ++   ++    L ++  +  +++ +++
Sbjct: 4   TITVSTPIKQIFPDD----AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS 57

Query: 114 VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL 173
           V        P++ KL L+GN +  IK      L  L  L L +  I+ +   +   L  L
Sbjct: 58  VQG--IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKIKDLS--SLKDLKKL 111

Query: 174 EWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
           + L L++N I+ I+G   LP  L  + L +N
Sbjct: 112 KSLSLEHNGISDINGLVHLP-QLESLYLGNN 141

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 8e-06
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 125 LMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT 184
           + +      PIKQI        +  +   L K  +          L+S++ +  +N+ I 
Sbjct: 1   MGETITVSTPIKQIF--PDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 185 TISGSNILPTGLHGIDLHHN 204
           ++ G   L   +  + L+ N
Sbjct: 57  SVQGIQYL-PNVTKLFLNGN 75

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 41/169 (24%), Positives = 64/169 (37%), Gaps = 15/169 (8%)

Query: 41  ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
           I+ +  +    N   L   GN LK +         L NL  + L+  +IS +      GL
Sbjct: 211 ISDITPLGILTNLDELSLNGNQLKDIGTLA----SLTNLTDLDLANNQISNLA--PLSGL 264

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
           T L +L    N +  +         +L  L L+ N ++ I       L  L  L L    
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNN 320

Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
           I  I       L  L+ L   NNK++ +S    L T ++ +   HN  +
Sbjct: 321 ISDIS--PVSSLTKLQRLFFYNNKVSDVSSLANL-TNINWLSAGHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 84.6 bits (210), Expect = 2e-17
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 14/153 (9%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
             +    N +  +         L NL  + L   +I+ ID    + LTNL  L+ S N +
Sbjct: 93  VDILMNNNQIADITPLA----NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTI 146

Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171
             + +       SL +L+   N +  +K      L+ L  L++S   +  I       L 
Sbjct: 147 SDISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDIS--VLAKLT 199

Query: 172 SLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
           +LE L   NN+I+ I+   IL T L  + L+ N
Sbjct: 200 NLESLIATNNQISDITPLGIL-TNLDELSLNGN 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.1 bits (206), Expect = 8e-17
 Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 18/173 (10%)

Query: 35  CVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS 92
             ++  I  ++G++   N   ++++ N L  +   K     L  L  I ++  +I+ I  
Sbjct: 52  QADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADIT- 106

Query: 93  KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
                LTNL  L   +N +  +      +  +L +L LS N I  I   A   L+ L  L
Sbjct: 107 -PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQL 161

Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG-SNILPTGLHGIDLHHN 204
                  ++        L +LE L + +NK++ IS  + +  T L  +   +N
Sbjct: 162 SFGNQVTDLK---PLANLTTLERLDISSNKVSDISVLAKL--TNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.5 bits (189), Expect = 8e-15
 Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 13/150 (8%)

Query: 59  NNLKTLHNEKFQKM----GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTV 114
            +     +    ++     L    K  L +  ++  D+ +   L  +  L      ++++
Sbjct: 4   GSATITQDTPINQIFTDTALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSI 61

Query: 115 PSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLE 174
                    +L ++  S N +  I     + L+ LV + ++   I  I       L +L 
Sbjct: 62  DG--VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLT 115

Query: 175 WLKLDNNKITTISGSNILPTGLHGIDLHHN 204
            L L NN+IT I     L T L+ ++L  N
Sbjct: 116 GLTLFNNQITDIDPLKNL-TNLNRLELSSN 144

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 86.3 bits (214), Expect = 3e-19
 Identities = 53/211 (25%), Positives = 75/211 (35%), Gaps = 45/211 (21%)

Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
           ACP+ C C       TV+C +K   +V  G+  N Q+L    N +  L            
Sbjct: 12  ACPSQCSC----SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKL------------ 55

Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
                         +   F  L NL +L    N L  +P   F     L  L L  N + 
Sbjct: 56  --------------EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 137 QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG- 195
            + +  F  L +L  L +    +  +       L  L  L LD N++ +I      P G 
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSI------PHGA 154

Query: 196 ------LHGIDLHHNPWTCDCLLIG-LRRWL 219
                 L    L  NPW C+C  I  LR W+
Sbjct: 155 FDRLSSLTHAYLFGNPWDCECRDIMYLRNWV 185

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.9 bits (226), Expect = 5e-19
 Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 19/172 (11%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
               +L+   N L+      F     + L  + L+  +I+ I +        + +L F+H
Sbjct: 330 KKLGMLECLYNQLEGKLPA-FGS--EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 109 NVLQTVPSDTFPDY-PSLMKLTLSGNPIKQIKTGAFQPLSY-------LVTLELSKCGIE 160
           N L+ +P+         +  +  S N I  +    F PL         + ++ LS   I 
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 161 VIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--------TGLHGIDLHHN 204
                 F     L  + L  N +T I  +++            L  IDL  N
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.0 bits (203), Expect = 3e-16
 Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 25/175 (14%)

Query: 52  QVLDYTGNNLKTLHNEKFQKM-----GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106
             +D++ N + ++  + F  +       +N+  I LS  +IS    + F   + L  ++ 
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 107 SHNVLQTVPSDTFPDYP-------SLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCG 158
             N+L  +P ++  D          L  + L  N + ++        L YLV ++LS   
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI---LP------TGLHGIDLHHN 204
                        +L+   + N +     G+      P        L  + +  N
Sbjct: 525 FSKFPTQPL-NSSTLKGFGIRNQRD--AQGNRTLREWPEGITLCPSLTQLQIGSN 576

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 81.2 bits (201), Expect = 4e-16
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 17/169 (10%)

Query: 52  QVLDYTGNNLKTL------HNEKFQKMGLVNLQKIYLSRCRISVID-SKAFRGLTNLVDL 104
           Q+++   N   +                   +Q IY+    +       + + +  L  L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 105 DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED 164
           +  +N L+      F     L  L L+ N I +I          +  L  +   ++ I +
Sbjct: 336 ECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394

Query: 165 AAFVG-LDSLEWLKLDNNKITTISGSNILP--------TGLHGIDLHHN 204
                 +  +  +    N+I ++ G N  P          +  I+L +N
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.2 bits (188), Expect = 2e-14
 Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 19/181 (10%)

Query: 52  QVLDYTGNNLKTLHNEKFQKM-----GLVNLQKIYLSRCRISVI-DSKAFRGLTNLVDLD 105
             ++  GN L  +     +           L  I L   +++ + D      L  LV +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 106 FSHNVLQTVPSDTFPDYPSLMKLTLSGNPI----KQIKT--GAFQPLSYLVTLELSKCGI 159
            S+N     P+    +  +L    +         + ++           L  L++    I
Sbjct: 520 LSYNSFSKFPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-TGLHGIDLHHNPWT--CDCLLIGLR 216
             + +       ++  L + +N   +I  S + P        L ++       C  + ++
Sbjct: 579 RKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

Query: 217 R 217
           R
Sbjct: 636 R 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 17/145 (11%)

Query: 73  GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDT--------FPDYPS 124
            L +L  + +  C          + L  +  ++ + N   +              P    
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 125 LMKLTLSGNPIKQIKTG----AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN 180
           +  + +  N    +KT     + Q +  L  LE     +E     AF     L  L L  
Sbjct: 307 IQIIYIGYN---NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362

Query: 181 NKITTI-SGSNILPTGLHGIDLHHN 204
           N+IT I +        +  +   HN
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHN 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 18/158 (11%), Positives = 40/158 (25%), Gaps = 16/158 (10%)

Query: 50  NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN 109
               + Y    +     E F      +L K  ++         K+ R       +    N
Sbjct: 139 QKMRMHYQKTFVDYDPREDFS-----DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVG 169
            +  V          L +  +  +P                            ED  +  
Sbjct: 194 NITFVSK-AVMRLTKLRQFYMGNSPF----VA-ENICEAWENENSEYAQQYKTEDLKWDN 247

Query: 170 LDSLEWLKL-DNNKITTISGS--NILPTGLHGIDLHHN 204
           L  L  +++ +   +T +      +    +  I++  N
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKAL--PEMQLINVACN 283

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 31/147 (21%)

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFP--------------- 120
            +  + L     S     A   LT L  L    +  +       P               
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 121 ---------------DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDA 165
                          D+  L+K  ++ +P ++    + +       +      I  +   
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-K 200

Query: 166 AFVGLDSLEWLKLDNNKITTISGSNIL 192
           A + L  L    + N+     +     
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAW 227

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 16/172 (9%)

Query: 36  VNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK 93
           + K  +T +         Q  +   +N+++L   +       NL++++LS  +IS +   
Sbjct: 26  LGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQ----FFTNLKELHLSHNQISDL--S 79

Query: 94  AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE 153
             + LT L +L  + N L+ +          L +L L  N ++     +   L  L  L 
Sbjct: 80  PLKDLTKLEELSVNRNRLKNLNGIPSA---CLSRLFLDNNELRDTD--SLIHLKNLEILS 134

Query: 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
           +    ++ I       L  LE L L  N+IT   G   L   ++ IDL    
Sbjct: 135 IRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGGLTRLKK-VNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.1 bits (185), Expect = 4e-15
 Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 73  GLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG 132
           GL N  K  L +  ++ + S   + L+ + + +  ++ +Q++       + +L +L LS 
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 133 NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL 192
           N I  +     + L+ L  L +++  ++ +     +    L  L LDNN++        L
Sbjct: 73  NQISDLS--PLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDSLIHL 127

Query: 193 PTGLHGIDLHHN 204
              L  + + +N
Sbjct: 128 -KNLEILSIRNN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 15/149 (10%)

Query: 41  ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
           I  + GM    N + L  + N +  L   K     L  L+++ ++R R+  ++       
Sbjct: 53  IQSLAGMQFFTNLKELHLSHNQISDLSPLK----DLTKLEELSVNRNRLKNLNGIP---S 105

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
             L  L   +N L+   S       +L  L++  N +K I       LS L  L+L    
Sbjct: 106 ACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNE 161

Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTIS 187
           I          L  + W+ L   K     
Sbjct: 162 ITNTGG--LTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 116 SDTFPD--YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL 173
           +  FPD    + +K  L    +  + +   + LS +         I+ +         +L
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNL 65

Query: 174 EWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
           + L L +N+I+ +S    L T L  + ++ N
Sbjct: 66  KELHLSHNQISDLSPLKDL-TKLEELSVNRN 95

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 21/157 (13%)

Query: 41  ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
           +   + +    N ++L    N LK++         L  L+ + L    I+         L
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKLKSIVMLG----FLSKLEVLDLHGNEITNTGG--LTRL 171

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
             +  +D +       P    P      +L ++ N +K        P        +S  G
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQP------ELYIT-NTVKDPDGRWISPYY------ISNGG 218

Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
             V     +      + +    ++   +  +  +  G
Sbjct: 219 SYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDG 255

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           + I EG+   +  KVS +P   ++W  +G  +Q+      + H +  +E+G       L+
Sbjct: 15  MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQS-----DDLHKMIVSEKGL----HSLI 65

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
                  D G + CVA+N+AG  +    + ++ KE
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 81.5 bits (202), Expect = 5e-18
 Identities = 51/203 (25%), Positives = 71/203 (34%), Gaps = 54/203 (26%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
           CP+ C C        + C +K L +V  G+  +   L+   N L++L             
Sbjct: 1   CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL------------- 43

Query: 78  QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
                            F  LT L  L  S N +Q++P   F     L  L L  N ++ 
Sbjct: 44  -------------PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLH 197
           +  G F  L+ L  L L    ++ + D  F  L SL+                       
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK---------------------- 128

Query: 198 GIDLHHNPWTCDCLLIG-LRRWL 219
            I LH NPW C C  I  L RWL
Sbjct: 129 -IWLHTNPWDCSCPRIDYLSRWL 150

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.9 bits (203), Expect = 6e-18
 Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 10/155 (6%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
             +     N+  L     +     N++ + ++    +        GL+NL  L      +
Sbjct: 47  TYITLANINVTDL--TGIEY--AHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDV 100

Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC-GIEVIEDAAFVGL 170
            +          SL  L +S +            L  + +++LS    I  I       L
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTL 158

Query: 171 DSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
             L+ L +  + +    G       L+ +      
Sbjct: 159 PELKSLNIQFDGVHDYRGIEDF-PKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 11/149 (7%)

Query: 41  ITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
           +T + G++   N + L     +    +       GL NL+++ +    ++        GL
Sbjct: 56  VTDLTGIEYAHNIKDLTINNIHATNYNPIS----GLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP-IKQIKTGAFQPLSYLVTLELSKC 157
           T+L  LD SH+             P +  + LS N  I  I     + L  L +L +   
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD 169

Query: 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
           G+             L  L   +  I   
Sbjct: 170 GVHDYR--GIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 5/131 (3%)

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
             +         S   +     + +L  +  ++  +  +         ++  LT++    
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA 78

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP-T 194
                     LS L  L +    +   +     GL SL  L + ++       + I    
Sbjct: 79  TNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 195 GLHGIDLHHNP 205
            ++ IDL +N 
Sbjct: 137 KVNSIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRC-RISVIDSKAFRGLTNLVDLDFS 107
            +  +LD + +        K     L  +  I LS    I+ I     + L  L  L+  
Sbjct: 112 TSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQ 167

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK 139
            + +         D+P L +L      I   K
Sbjct: 168 FDGVHDYRG--IEDFPKLNQLYAFSQTIGGKK 197

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.5 bits (214), Expect = 8e-18
 Identities = 53/279 (18%), Positives = 95/279 (34%), Gaps = 40/279 (14%)

Query: 2   MYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNL 61
            +       +I + S  P S        +  V+  N++L  V + + P T+ L       
Sbjct: 11  SFHFVCALALI-VGSMTPFSNE-----LESMVDYSNRNLTHVPKDLPPRTKALS------ 58

Query: 62  KTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPD 121
                               LS+  IS +       L+ L  L  SHN ++++    F  
Sbjct: 59  --------------------LSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98

Query: 122 YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI-EDAAFVGLDSLEWLKLDN 180
              L  L +S N   +++  +  P++ L  L+LS    +V+     F  L  L +L L  
Sbjct: 99  NQDLEYLDVSHN---RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

Query: 181 NKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPI----CSVPP 236
            K   +    +    L  I L    +          +   +T   +   P       V  
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 237 RLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLL 275
            ++++   QLS  +L  E      TF  E+  G  +  +
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.4 bits (175), Expect = 4e-13
 Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 34/176 (19%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT----NLVDL 104
              Q L    N LK             N+  +      ++ ++S A+        +++ L
Sbjct: 377 KRLQTLILQRNGLKNFFKVALM---TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433

Query: 105 DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED 164
           + S N+L        P  P +  L L  N I  I       L  L  L ++   ++ + D
Sbjct: 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPD 490

Query: 165 AAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLI-GLRRWL 219
             F  L SL+++ L +                       NPW C C  I  L  W+
Sbjct: 491 GVFDRLTSLQYIWLHD-----------------------NPWDCTCPGIRYLSEWI 523

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.1 bits (156), Expect = 8e-11
 Identities = 21/180 (11%), Positives = 52/180 (28%), Gaps = 8/180 (4%)

Query: 37  NKSLITVVEGMDPNTQVLDYTGNNLKTLHNEK---FQKMGLVNLQKIYLSRCRISVIDSK 93
            + L+T +  +     +L+ T  +++T        FQ      ++ + +    I+    +
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294

Query: 94  AF-----RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSY 148
                    L +L+     + V        +  +  +    LS +    I        S 
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

Query: 149 LVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTC 208
              L  ++             L  L+ L L  N +       ++   +  ++        
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           L +QEGK   + CKVS +P   ++W  DG P++        +H +   E G       L+
Sbjct: 19  LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRP-----DSAHKMLVRENGV----HSLI 69

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
           I      D G + C+A N+AG  S +  + +  KE 
Sbjct: 70  IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 81.2 bits (201), Expect = 5e-17
 Identities = 51/233 (21%), Positives = 86/233 (36%), Gaps = 46/233 (19%)

Query: 31  QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTL--------------HNEKFQKMG--- 73
           +T+           +     T   +    ++                 +N   + +    
Sbjct: 1   ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ 60

Query: 74  -LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG 132
            L N++ + L   ++  I   A + LTNL  L  + N LQ++P+  F    +L +L L  
Sbjct: 61  YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118

Query: 133 NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI-SG--- 188
           N ++ +  G F  L+ L  L L+   ++ +    F  L +L  L L  N++ ++  G   
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178

Query: 189 -----------SNIL---PTG-------LHGIDLHHNPWTCDCLLIG-LRRWL 219
                       N L   P G       L  I LH NPW C C  I  L  W+
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 231

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
             ++EG++V +  +V   P+  ++WL +  P++       +       E G       L 
Sbjct: 15  QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRP-----DQRRFAEEAEGGL----CRLR 65

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           I  +   D G + C A N+ G+      + +
Sbjct: 66  ILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
             + +G +     +V   P+ +  W  +GV I+      S+    Y  E+       EL+
Sbjct: 15  QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER-----SDRIYWYWPEDNV----CELV 65

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSS 348
           I +   +D+ + +  A N AG TSS
Sbjct: 66  IRDVTGEDSASIMVKAINIAGETSS 90

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 82.7 bits (204), Expect = 2e-16
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 13/134 (9%)

Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
           +L +      P I  +     ++ G +V L C     P  +I+W  DG  I N     ++
Sbjct: 420 ELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN-----ND 474

Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVV 364
            + V           S L I + + +D G + C+A+++ G    +  +       NV  +
Sbjct: 475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL-------NVYGL 527

Query: 365 TVF-PLEYVLIVSG 377
                +E   IV+G
Sbjct: 528 PYIRQMEKKAIVAG 541

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 69.2 bits (169), Expect = 3e-12
 Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 17/118 (14%)

Query: 255 PQITPSTF-YLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTE 312
           P+I P  F     Q G+ ++L C V        I W  DG  I       SE   + ++ 
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI-------SEDLGITTSR 671

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
            G     S L I        G F C A N AG       +      R +L+  +    
Sbjct: 672 VGRRG--SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFA 727

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 68.4 bits (167), Expect = 5e-12
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 7/101 (6%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+           +G +  + CK    P+ ++TW         E     +S      EEG
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSD-NIRVEEG 773

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           T      L + N    + G ++C A N  GS  S   +  V
Sbjct: 774 T------LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 67.7 bits (165), Expect = 1e-11
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 20/100 (20%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                      +  G+     C+ +  P   ++W+ DG  I +                 
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--------------- 388

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                S L I +   +D G + C   N   S  ++  +++
Sbjct: 389 -----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 423

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 65.7 bits (160), Expect = 4e-11
 Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 14/131 (10%)

Query: 239 SSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
               +    I     +                 ++LLC     P     W         +
Sbjct: 233 KGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRK 292

Query: 299 SMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------ 352
                         +  +     L+I ++ ++D+G ++CV  N  G  S    +      
Sbjct: 293 Q--------AVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL 344

Query: 353 RIVLKEENVEV 363
              +      V
Sbjct: 345 SAKIDPPTQTV 355

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 15/95 (15%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P I        I  G+ + + C V+  P   I W  D   +         +        G
Sbjct: 528 PYIRQ-MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALP-------INRKQKVFPNG 579

Query: 315 TEIKKSELLIYNSNID-DNGTFVCVAENQAGSTSS 348
           T      L+I N   + D  T+ CVA+NQ G ++ 
Sbjct: 580 T------LIIENVERNSDQATYTCVAKNQEGYSAR 608

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 18/133 (13%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPIQNESMSASESHAVYST 311
                      +  G +  + C + +        ++W  D              + V  +
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 198

Query: 312 EEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAGSTS--SNYTIRIVLKEENVE----VV 364
                    EL I      D   ++ C  +++    +  S    R+V+ E        VV
Sbjct: 199 --------GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVV 250

Query: 365 TVFPLEYVLIVSG 377
           ++   +       
Sbjct: 251 SLAKFDMKTYSGS 263

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 54.6 bits (131), Expect = 1e-07
 Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 26/115 (22%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
           ++        + CK S  P  +I W+  DG  + +             + +G       L
Sbjct: 49  IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD------VPGLRQISSDGK------L 96

Query: 323 LIYNSNIDD------NGTFVCVAENQAGSTSSN-------YTIRIVLKEENVEVV 364
           +      +D         + C+A NQ GS  S                     V+
Sbjct: 97  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 151

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 9/124 (7%)

Query: 235 PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVP 294
                   +KQ +I E      +      + IQEGK ++L C V   P  +++WL +   
Sbjct: 98  EAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 157

Query: 295 IQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           +       ++   +      T    +   I   +  D+G +  V +N+ GS +S++T+ +
Sbjct: 158 LAQ-----TDHCNLKFEAGRT----AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208

Query: 355 VLKE 358
            + E
Sbjct: 209 FIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 11/106 (10%)

Query: 268 EGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN 326
             + + L   V+  + + K+ W  +G  I+      S+      T E        L I  
Sbjct: 16  TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY-----SDRVKTGVTGEQ-----IWLQINE 65

Query: 327 SNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYV 372
              +D G +V    +          +     +E            +
Sbjct: 66  PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 111

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 252 ACEPQIT--PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309
           A  P          L ++   N +L+CKV+  P+  + W   G  I     +    + + 
Sbjct: 2   AMAPHFKEELRN--LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII----ADGLKYRIQ 55

Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
             + G      +L+I +   DD   +   A NQ GS S   ++ + +  +
Sbjct: 56  EFKGGY----HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK 101

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 14/105 (13%)

Query: 255 PQITPSTFY-----LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309
            +I           +    G+ VS+    S  P+  ITW      I N     +  + V 
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN-----NGHYQVI 154

Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
            T   T    S +        D G +V  A+N+ G       + +
Sbjct: 155 VTRSFT----SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
            CP+ C C     +  V C N  L +V  G+  + Q L    N +  L    F    LVN
Sbjct: 5   GCPSQCSC----DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDH--LVN 58

Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
           LQ++Y +  +++ I +  F  LT L  LD + N L+++P   F +  SL  + L  NP
Sbjct: 59  LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 74.1 bits (182), Expect = 5e-16
 Identities = 30/98 (30%), Positives = 35/98 (35%), Gaps = 14/98 (14%)

Query: 172 SLEWLKLDNNKITTISGSNILPTG-------LHGIDLHHNPWTCDCLLIGLRRWLESTKT 224
               L L  N +T       LP G       L    L  NPW CDC L+ LR WL     
Sbjct: 32  DTTELVLTGNNLTA------LPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPE 85

Query: 225 PMAI-DPICSVPPRLSSVTIKQLSIDELACEPQITPST 261
                D  C  PP L    +  L+ DEL       P +
Sbjct: 86  RAPYRDLRCVAPPALRGRLLPYLAEDELRAACAPGPLS 123

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 30/135 (22%)

Query: 18  CPTSCICKWKGGKQTVECVNKSL--ITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLV 75
           CP  C C        V+C  + L   ++      +T  L  TGNNL  L         L 
Sbjct: 2   CPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDA--LP 55

Query: 76  NLQKIYLSR------CRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT 129
            L+  +L        CR+                +     +        + D   +    
Sbjct: 56  ALRTAHLGANPWRCDCRL----------------VPLRAWLAGRPERAPYRDLRCVAPPA 99

Query: 130 LSGNPIKQIKTGAFQ 144
           L G  +  +     +
Sbjct: 100 LRGRLLPYLAEDELR 114

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
            ++ EG +V L C++SAIP  K+ W  +   +Q      ++  ++Y    G       LL
Sbjct: 25  KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN----TDRISLYQDNTGR----VTLL 76

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           I + N  D G +   A N+AG T+ N  + +
Sbjct: 77  IKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 75.0 bits (185), Expect = 8e-16
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
           ACP+ C C       TV+C  KSL +V  G+   TQVL    N +  L    F +  L  
Sbjct: 2   ACPSQCSC----SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR--LTQ 55

Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
           L ++ L   +++V+ +  F  LT L  L  + N L+++P   F +  SL  + L  NP
Sbjct: 56  LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.7 bits (197), Expect = 9e-16
 Identities = 32/156 (20%), Positives = 50/156 (32%), Gaps = 18/156 (11%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
                L  T NN+ TL   +       NL  +     +++ +D      LT L  L+   
Sbjct: 64  TGLTKLICTSNNITTLDLSQ-----NTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDT 115

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
           N L  +        P L  L  + N + +I        + L  L+        I      
Sbjct: 116 NKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK--ITKLDVT 167

Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
               L  L    NKIT +  S      L+ ++   N
Sbjct: 168 PQTQLTTLDCSFNKITELDVSQ--NKLLNRLNCDTN 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 32/178 (17%), Positives = 54/178 (30%), Gaps = 35/178 (19%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
                L+   NN+  L          + L  +  S  +++ ID      LT L   D S 
Sbjct: 191 KLLNRLNCDTNNITKLDLN-----QNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSV 242

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIK-------------------QIKTGAFQPLSYL 149
           N L  +   T      L  L      +                    +IK       + L
Sbjct: 243 NPLTELDVSTLS---KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQL 299

Query: 150 VTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
             L+    GI  ++         L +L L+N ++T +  S+   T L  +   +    
Sbjct: 300 YLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDVSHN--TKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 33/157 (21%), Positives = 49/157 (31%), Gaps = 18/157 (11%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
                L+   N L  L   +        L  +  +R  ++ ID       T L +LD   
Sbjct: 106 TKLTYLNCDTNKLTKLDVSQ-----NPLLTYLNCARNTLTEID---VSHNTQLTELDCHL 157

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
           N   T           L  L  S N I ++          L  L      I  ++     
Sbjct: 158 NKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LN 209

Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
               L +L   +NK+T I  + +  T L   D   NP
Sbjct: 210 QNIQLTFLDCSSNKLTEIDVTPL--TQLTYFDCSVNP 244

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 15/157 (9%)

Query: 48  DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS 107
           D N          ++       ++  L  L  +      I+ +       LT L  L  +
Sbjct: 17  DDNFASEVAAAFEMQATDTISEEQ--LATLTSLDCHNSSITDMT--GIEKLTGLTKLICT 72

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF 167
            N + T+         +L  L    N +  +      PL+ L  L      +  ++    
Sbjct: 73  SNNITTLD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD---V 123

Query: 168 VGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
                L +L    N +T I  S+   T L  +D H N
Sbjct: 124 SQNPLLTYLNCARNTLTEIDVSHN--TQLTELDCHLN 158

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 10/132 (7%)

Query: 76  NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
           N      +   +   D+ +   L  L  LD  ++ +  +          L KL  + N I
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNI 76

Query: 136 KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG 195
             +        + L  L      +  ++      L  L +L  D NK+T +  S      
Sbjct: 77  TTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQ--NPL 128

Query: 196 LHGIDLHHNPWT 207
           L  ++   N  T
Sbjct: 129 LTYLNCARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.0 bits (164), Expect = 8e-12
 Identities = 31/229 (13%), Positives = 56/229 (24%), Gaps = 23/229 (10%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
                 D + N L  L            L  ++  +  +  ID       T L+      
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLS-----KLTTLHCIQTDLLEID---LTHNTQLIYFQAEG 284

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV 168
              + +          L  L      I ++          LV L L+   +  ++     
Sbjct: 285 C--RKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELD---VS 336

Query: 169 GLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAI 228
               L+ L   N  I   S    +P  L+                     L    +P  +
Sbjct: 337 HNTKLKSLSCVNAHIQDFSSVGKIPA-LNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395

Query: 229 D------PICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKN 271
           D       I      +       ++ + L+ +      TF  E      
Sbjct: 396 DQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVG 444

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P IT   F        +  +   V   P+  + W ++G  +       ++ H    TE  
Sbjct: 5   PTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY- 60

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                  L + N    +NG +  +A+N+ G      +   +
Sbjct: 61  ----HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 249 DELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAV 308
              A  P IT       I+ G  V + CK    P   I W+ +   +         S+  
Sbjct: 105 KTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVD-------MSNPR 157

Query: 309 YSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
           YS ++G       L I NS  +D G + CVAEN  G+  S  T   V 
Sbjct: 158 YSLKDGF------LQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 61.3 bits (149), Expect = 7e-11
 Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 10/116 (8%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
            P+I        ++ G   S  C     P   I W  +G  +          + V     
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVS----GTQSRYTVLEQPG 61

Query: 314 GTEIKKSELLIYNSNI-DDNGTFVCVAENQAGST-SSNYTIRIVLKEENVEVVTVF 367
           G  I    L I       D+  + CVAEN  G   S++ T+ I   ++      V 
Sbjct: 62  GISI----LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVI 113

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
             +  G+N   +  V + P A++ W  +GV +Q        S   Y+   G       L 
Sbjct: 18  HRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQE------SSKIHYTNTSGV----LTLE 67

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSS 348
           I + + DD+GT+  V  N  G  S 
Sbjct: 68  ILDCHTDDSGTYRAVCTNYKGEASD 92

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
            +I EG  V+  C+V+  P+ KI W  DG  I  +    S+ + +    +GT      L 
Sbjct: 18  YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPK----SDHYTIQRDLDGT----CSLH 69

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSN 349
              S +DD+G +  +A N  G  S  
Sbjct: 70  TTASTLDDDGNYTIMAANPQGRISCT 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P I        +       L CK +  P   I+WL +G                   E+G
Sbjct: 9   PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP------GRDPRATIQEQG 62

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           T      L I N  I D GT+ CVA + +G TS +  + +
Sbjct: 63  T------LQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.1 bits (193), Expect = 3e-15
 Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 35/172 (20%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
           P    +    N+LK L +        ++L+ I      +  +     + L  L  +   +
Sbjct: 195 PFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILEELPE--LQNLPFLTTIYADN 246

Query: 109 NVLQTVPSD---------------TFPDYP-SLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
           N+L+T+P                   P+ P SL  L +S N    +          L  L
Sbjct: 247 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL----PPNLYYL 302

Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
             S   I  + D       SLE L + NNK+  +      P  L  +    N
Sbjct: 303 NASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL---PPRLERLIASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.4 bits (186), Expect = 2e-14
 Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 27/170 (15%)

Query: 49  PNTQVLDYTGNNLKTLHNE-----KFQKMGL---------VNLQKIYLSRCRISVIDSKA 94
           P+ + L  + N+L  L                          L+ + +S  ++  +    
Sbjct: 91  PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-- 148

Query: 95  FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL 154
            +  + L  +D  +N L+ +P       PSL  +    N ++++     Q L +L  +  
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYA 202

Query: 155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
               ++ +         SLE +   NN +  +     L   L  I   +N
Sbjct: 203 DNNSLKKL----PDLPLSLESIVAGNNILEELPELQNL-PFLTTIYADNN 247

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 23/164 (14%), Positives = 57/164 (34%), Gaps = 33/164 (20%)

Query: 60  NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS-------------------KAFRGLTN 100
             + +   + +        ++ L+   +S +                     +  + L +
Sbjct: 56  EQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKS 115

Query: 101 LVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIE 160
           L+  + +   L  +P       P L  L +S N ++++     Q  S+L  +++    ++
Sbjct: 116 LLVDNNNLKALSDLP-------PLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLK 166

Query: 161 VIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
            + D       SLE++   NN++  +         L  I   +N
Sbjct: 167 KLPD----LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 23/135 (17%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
           + L+ + N L  L            L+++  S   ++ +         NL  L   +N L
Sbjct: 320 EELNVSNNKLIELPAL------PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPL 369

Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171
           +      FPD P  ++     + + ++          L  L +    +    D      +
Sbjct: 370 RE-----FPDIPESVEDLRMNSHLAEVPEL----PQNLKQLHVETNPLREFPDI----PE 416

Query: 172 SLEWLKLDNNKITTI 186
           S+E L++++ ++   
Sbjct: 417 SVEDLRMNSERVVDP 431

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 33/150 (22%)

Query: 72  MGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS 131
           +    LQ+       ++ +  +A   + +  +   + +  +        +   +    L 
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 132 GNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI----- 186
               +Q              LEL+  G+  + +        LE L    N +T +     
Sbjct: 67  DCLDRQ-----------AHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELPQ 111

Query: 187 ----------SGSNI--LPTGLHGIDLHHN 204
                     +   +  LP  L  + + +N
Sbjct: 112 SLKSLLVDNNNLKALSDLPPLLEYLGVSNN 141

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 25/119 (21%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS---------------KAFR 96
           + L  + N+L  +           NL+++++    +                    +   
Sbjct: 340 ERLIASFNHLAEVPEL------PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393

Query: 97  GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELS 155
              NL  L    N L+  P        S+  L ++   +      A +    L      
Sbjct: 394 LPQNLKQLHVETNPLREFP----DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 76.5 bits (188), Expect = 3e-15
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 9/124 (7%)

Query: 235 PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVP 294
                   +KQ +I E      +      + IQEGK ++L C V   P  +++WL +   
Sbjct: 203 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 262

Query: 295 IQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           + +      +   +      T    +   I   +  D+G +  V +N+ GS +S++T+ +
Sbjct: 263 LAS-----DDHCNLKFEAGRT----AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313

Query: 355 VLKE 358
            + E
Sbjct: 314 FIPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 69.2 bits (169), Expect = 8e-13
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 19/128 (14%)

Query: 265 EIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           E+    NV L CKV+ I  E  I W  D   I  +          +  ++G       LL
Sbjct: 17  EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK--------HDFKDGI----CTLL 64

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVVTVFPLEYVLIVSG 377
           I   +  D G +  + ++  G   S   +       ++++      ++   L+      G
Sbjct: 65  ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEG 124

Query: 378 IISVCSLV 385
           I     + 
Sbjct: 125 IQLYSFVT 132

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 12/122 (9%)

Query: 240 SVTIKQLSIDELACEPQITPSTFYLEIQ-EGKNVSLLCKVSAI-PEAKITWLFDGVPIQN 297
            +  +      +    +I  S   L+IQ   + + L   V+    + K+ W  +G  I+ 
Sbjct: 92  KLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY 151

Query: 298 ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
                S+      T E     +  L I     +D G +V    +          +     
Sbjct: 152 -----SDRVKTGVTGE-----QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAY 201

Query: 358 EE 359
           +E
Sbjct: 202 DE 203

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 71.7 bits (176), Expect = 3e-15
 Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 14/120 (11%)

Query: 239 SSVTIKQLSIDELACEPQITPSTFY---LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPI 295
           S    + ++I E+A  P+I            + G+ ++L+      P  ++ W   G P+
Sbjct: 6   SGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL 65

Query: 296 QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                    S     T +      +   +  +   D+G +    + +    ++   IR+V
Sbjct: 66  D-------TSRVHVRTSDFD----TVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
           P    L+     L    ++ F+   L +LQ + +    +  +     +    L  L  + 
Sbjct: 81  PGRVALELRSVPLPQFPDQAFR---LSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLAR 136

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNP--------IKQIKT-GAFQPLSYLVTLELSKCGI 159
           N L+ +P  +      L +L++   P        +      G  Q L  L +L L   GI
Sbjct: 137 NPLRALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTI 186
             +  A+   L +L+ LK+ N+ ++ +
Sbjct: 196 RSL-PASIANLQNLKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 31/172 (18%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMG-LVNLQKIYLSRC-RISVI--------DSKAFRGLTNL 101
           + L    N L+ L       +  L  L+++ +  C  ++ +         S   +GL NL
Sbjct: 130 ETLTLARNPLRALPAS----IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 102 VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC-GIE 160
             L      ++++P+    +  +L  L +  +P+  +   A   L  L  L+L  C  + 
Sbjct: 186 QSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALR 243

Query: 161 VIEDAAFVGLDSLEWLKL-DNNKITTISGSNILP------TGLHGIDLHHNP 205
                 F G   L+ L L D + + T      LP      T L  +DL    
Sbjct: 244 NYPP-IFGGRAPLKRLILKDCSNLLT------LPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 20/143 (13%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH-NV 110
           Q L      +++L         L NL+ + +    +S +   A   L  L +LD      
Sbjct: 186 QSLRLEWTGIRSLPASIAN---LQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTA 241

Query: 111 LQTVPSDTFPDYPSLMKLTLSG-NPIKQIKTGAFQP-----LSYLVTLELSKC-GIEVIE 163
           L+  P   F     L +L L   + +  +      P     L+ L  L+L  C  +  + 
Sbjct: 242 LRNYP-PIFGGRAPLKRLILKDCSNLLTL------PLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 164 DAAFVGLDSLEWLKLDNNKITTI 186
                 L +   + +  +    +
Sbjct: 295 SL-IAQLPANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 23/155 (14%)

Query: 52  QVLDYTG-NNLKTLHNE----------------KFQKMGLVNLQKIYLSRCR--ISVIDS 92
           + L + G   L+  H+                    +    N  +I     R   +  D 
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL 74

Query: 93  KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
                    V L+     L   P   F     L  +T+    + ++     Q  + L TL
Sbjct: 75  LEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLMEL-PDTMQQFAGLETL 132

Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKL-DNNKITTI 186
            L++  +  +   +   L+ L  L +    ++T +
Sbjct: 133 TLARNPLRALPA-SIASLNRLRELSIRACPELTEL 166

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 21/132 (15%), Positives = 35/132 (26%), Gaps = 23/132 (17%)

Query: 76  NLQKIYLSRCR--ISVIDS------------------KAFRGLTNLVDLDFSHNVLQTVP 115
             + +Y           D                          N      +   L+   
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 116 SDTFP-DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLE 174
                   P  + L L   P+ Q    AF+ LS+L  + +   G+  + D        LE
Sbjct: 73  DLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELPD-TMQQFAGLE 130

Query: 175 WLKLDNNKITTI 186
            L L  N +  +
Sbjct: 131 TLTLARNPLRAL 142

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 70.0 bits (172), Expect = 6e-15
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
             +          K +  P     W  DG  I              S ++G       L 
Sbjct: 16  TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT------QGGKYKLSEDKGG----FFLE 65

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSN 349
           I+ ++  D+G + C  +N AGS SS+
Sbjct: 66  IHKTDTSDSGLYTCTVKNSAGSVSSS 91

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 73.2 bits (180), Expect = 6e-15
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 14/106 (13%)

Query: 254 EPQITPSTFYLE---IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYS 310
            PQ  P     E      G  + L       P   +TW      +QN     SE+  + +
Sbjct: 100 TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQN-----SENITIEN 154

Query: 311 TEEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           TE       + L++ N       G +     N  G+  +   + I 
Sbjct: 155 TEHY-----THLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 72.4 bits (178), Expect = 9e-15
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           +  + G+   L C++   P   I W   G  +       S  + +  + +G       L 
Sbjct: 17  VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQ-----SRKYKM--SSDGR---THTLT 66

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           +     +D G + C+A N+ G   ++  + +
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 70.1 bits (172), Expect = 7e-15
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           + + EG++    C     P   +TWL  G  +       S  H V +T+       S   
Sbjct: 24  MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST-----SARHQVTTTKYK-----STFE 73

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           I +    D G +  V EN  G   + +T+ I
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 71.8 bits (176), Expect = 7e-15
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 9/111 (8%)

Query: 239 SSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
               +++++ ++   +P  T +   +E+ EG      CKV   P+ ++ W  D  P++  
Sbjct: 26  EDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE- 84

Query: 299 SMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
               S    +   EEG       L I     DD+  + C A N  G  +  
Sbjct: 85  ----SRHFQIDYDEEGN----CSLTISEVCGDDDAKYTCKAVNSLGEATCT 127

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 70.1 bits (172), Expect = 8e-15
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 15/121 (12%)

Query: 244 KQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSAS 303
           +QL++ E    P IT +        G+++ + C  S  P  +I W  D   +        
Sbjct: 1   RQLTVLERV-APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV------E 53

Query: 304 ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE--NV 361
           +S  V             L I     +D G + C A +  G         I   +E  N+
Sbjct: 54  DSGIVLKDGNRN------LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 107

Query: 362 E 362
           E
Sbjct: 108 E 108

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 69.8 bits (171), Expect = 8e-15
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
             +     V   C     P   + WL +G   +            Y            L+
Sbjct: 18  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ-----EHRIGGYKVRNQ----HWSLI 68

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           + +    D G + CV EN+ GS +  Y + +V
Sbjct: 69  MESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
             + EG++  L C V   P  +ITWL +G PIQ        + +              L 
Sbjct: 21  CAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ-------YARSTCEAGVAE------LH 67

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           I ++  +D+GT+ C+AEN  G  S +  + +
Sbjct: 68  IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P I        ++  +  ++LC  S  P+ +ITW  D +P+         S+     ++ 
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVD-------TSNNNGRIKQL 161

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
                  L I  S   D G + CVA N AG+  S
Sbjct: 162 RSESIGALQIEQSEESDQGKYECVATNSAGTRYS 195

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 69.1 bits (169), Expect = 2e-13
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 10/114 (8%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+ T +        G   S +C+ +  P  KI W   G  + N          +   +  
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN-----QRFEVIEFDDGS 61

Query: 315 TEIKKSELLIYNSNI-DDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVF 367
             +    L I       D   + CVA N  G  S +  + ++ +++        
Sbjct: 62  GSV----LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTI 111

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 16/118 (13%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P        +++  G++ +  C V+     KITW  D   I+        ++ +   E  
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP-----GGNYKMTLVENT 60

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVVTV 366
                + L +      D G + C A N AG  S +  +      R + K E   +V  
Sbjct: 61  -----ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ 113

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 72.5 bits (178), Expect = 4e-14
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
           +++ ++    CK+   PE K+ W  D   IQ      S    +   E       + L +Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQE-----SSKFRMSFVESV-----AVLEMY 160

Query: 326 NSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
           N +++D+G + C A N AGS SS+ ++          K   VE +
Sbjct: 161 NLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL 205

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 69.0 bits (169), Expect = 7e-13
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P        +E  +G +V L C++   P  +++W  D   +++      + + +    E 
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS-----GKKYKI--MSEN 245

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                + + I N +  D G + C A N  GS +   +I +
Sbjct: 246 F---LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 16/116 (13%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P        +E  +G +V L C++   P  +++W  D   ++                E 
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR-------SGKKYKIMSEN 437

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
                + + I N +  D G + C A N  GS +   +I      R V K  ++  V
Sbjct: 438 FL---TSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTV 490

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 17/117 (14%)

Query: 255 PQIT-PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P+          +++ ++    CK+   PE K+ W  D   IQ        S    S  E
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ------ESSKFRMSFVE 344

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
                 + L +YN +++D+G + C A N AGS SS+ ++          K   VE +
Sbjct: 345 SV----AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL 397

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
           +L++ E    P        +++  G++ +  C V+     KITW  D   I+        
Sbjct: 188 KLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP-----GG 242

Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           ++ +   E       + L +      D G + C A N AG  S +  + +
Sbjct: 243 NYKMTLVENT-----ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 71.8 bits (176), Expect = 4e-13
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+       +    G+ V L   +       + W  D   I  ES      +   S  E 
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES-----DNIWISYSEN 532

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                + L    +   + G + C  +N+AG+     T+ ++
Sbjct: 533 I----ATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 71.4 bits (175), Expect = 5e-13
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 19/119 (15%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P       ++E   G+ ++L CKV   PE +I W  +   ++    SA      +     
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLR----SAPAYKMQFKNNVA 61

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI---------RIVLKEENVEVV 364
           +      L+I   +  D G + C AEN  G+ +S+  +             K ++V   
Sbjct: 62  S------LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHET 114

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 71.0 bits (174), Expect = 6e-13
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 12/132 (9%)

Query: 246 LSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASES 305
           L I E    P        +    G  V+  C+++     +++W  DG  +++       +
Sbjct: 93  LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKD-----DAN 147

Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVT 365
                         + L I  ++    G + C A N  G+ SS  + ++ L E  V    
Sbjct: 148 LQTSFIHNV-----ATLQILQTDQSHVGQYNCSASNPLGTASS--SAKLTLSEHEVPPFF 200

Query: 366 VFPLEYVLIVSG 377
                 V +  G
Sbjct: 201 DLKPVSVDLALG 212

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 71.9 bits (176), Expect = 2e-14
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 3/108 (2%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P     +    +  G    L C      P ++ +W  DG+ +       + +    S   
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT- 163

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENV 361
             + K  +L+       D+G + C A+N  G+   +    +   E NV
Sbjct: 164 -IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNV 210

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
             +  +   +++ E +++ L C  S     ++ W F            S+        + 
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQI--TAPYADR 59

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                S +   +    DNG + C+   + G      +I + 
Sbjct: 60  VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 71.3 bits (175), Expect = 2e-14
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P  T     + + EG   +    +S  P  +++W  DG  I     +++      S  +G
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVIS----TSTLPGVQISFSDG 61

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
                ++L I      ++G +   A N +G  +S   + +  +  
Sbjct: 62  R----AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 14/112 (12%)

Query: 245 QLSIDELACEPQIT--PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA 302
           +L +      P       +  + +++G  V L  +V+ IP   + +  DG  IQ+     
Sbjct: 94  ELLVKAETAPPNFVQRLQS--MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS----- 146

Query: 303 SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           S    +    +        LLI  +  +D+GT+   A N  G  +S   + +
Sbjct: 147 SLDFQISQEGDL-----YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 9/107 (8%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
             +     V   C     P   + WL +G                Y            L+
Sbjct: 29  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF-----KQEHRIGGYKVRNQH----WSLI 79

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLE 370
           + +    D G + CV EN+ GS +  Y + +V +  +  ++      
Sbjct: 80  MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 64.9 bits (158), Expect = 7e-12
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE-L 322
                G +V  +CKV +  +  I W+       ++       +       G     +E L
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 187

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
            ++N    D G ++C   N  G  + +  + ++ K++
Sbjct: 188 ALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 70.5 bits (173), Expect = 4e-14
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 249 DELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAV 308
           ++L   P IT     ++    +  + +C V + P+ +I+W  + + I             
Sbjct: 2   EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILI-------KLFDTR 54

Query: 309 YSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
           YS  E        L I +    D+G + C A N  G    +     V 
Sbjct: 55  YSIREN----GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK 98

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 67.1 bits (164), Expect = 6e-13
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+IT     ++I EG    L C     P+  ++W+     ++       E+  +   E G
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-------ENSRIAVLESG 153

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           +      L I+N   +D G + CVA+N  G+  S      V
Sbjct: 154 S------LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 70.6 bits (173), Expect = 4e-14
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 12/101 (11%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
              +   +F    + G+ ++  C+ S  PE  I+W  +G  I+       E+        
Sbjct: 98  AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-------ENEKYILKGS 150

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                 +EL + N    D G +VC A N+AG       +++
Sbjct: 151 N-----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                     E ++G++  ++C+VS+ P   ++WL+    +   S      +        
Sbjct: 3   LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS-----DNRFAMLANN 57

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
                  L I N N  D G + C    +A        I +++
Sbjct: 58  N------LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 93

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 68.3 bits (167), Expect = 4e-14
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P++       E +      +   V   P   + WL +G P++   +   E +      EG
Sbjct: 9   PRVV---SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                  LL       +NG +  +A+N  G+ +       +
Sbjct: 66  C------LLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 100

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 68.3 bits (167), Expect = 5e-14
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 12/100 (12%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P I        +       L C  +  P   I W  DGV +       ++   +   E G
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVS------TQDSRIKQLENG 62

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  L I  + + D G + C+A   +G  + +  I +
Sbjct: 63  V------LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 67.7 bits (166), Expect = 6e-14
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           PQI       +++ G++V L  KV+       TW+     IQ      SE   V ++E G
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE-----SEHMKVENSENG 62

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                S+L I  +  +  G +  + EN+ GS  +   + +V
Sbjct: 63  -----SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 70.4 bits (172), Expect = 7e-14
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
             +  S   + I E   V L C  S     ++ W FD           ++  A  S E+ 
Sbjct: 5   VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITA--SYEDR 62

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                + +   +   +D GT+ C+   + G++     ++++
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 68.1 bits (166), Expect = 5e-13
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P             G    L C      P ++ TW  DG+ +     +   + A  ++  
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT---NPKSTRAFSNSSY 164

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  EL+    +  D G + C A N  G+  ++  +R+
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 69.9 bits (171), Expect = 8e-14
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 11/101 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                +    E +EG++  ++C V +     I W   G  +        +          
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI-----LKKDVRFIVLSNN 155

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                  L I      D GT+ C     A    +   I+++
Sbjct: 156 Y------LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIP-EAKITWLF-DGVPIQNESMSASESHAVYSTE 312
            Q+       EI  G++   LC+V+    +  I+W   +G  +        +  +V   +
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS----PNQQRISVVWND 58

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
           + +    S L IYN+NIDD G + CV   + G+ S 
Sbjct: 59  DDS----STLTIYNANIDDAGIYKCVVTAEDGTQSE 90

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 70.7 bits (173), Expect = 8e-14
 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 11/123 (8%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
            ++      L +     V   C  +  P   I+WL +G   + E                
Sbjct: 18  ERMDKKL--LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL-------- 67

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLI 374
              ++  L++ +    D G + CV EN+ GS    YT+ ++ +  +  ++          
Sbjct: 68  -RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 126

Query: 375 VSG 377
           V G
Sbjct: 127 VLG 129

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 62.3 bits (151), Expect = 6e-11
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE--L 322
               G +V   CKV +  +  I WL       ++       +        +E  +++  L
Sbjct: 125 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
            + N +  D G ++C A N  G     + + +
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 70.2 bits (172), Expect = 9e-14
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 14/86 (16%)

Query: 265 EIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
            +  G+   + C+     PE  I+W  DG P+        +     +   G       L+
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-------DKDERITIRGGK------LM 168

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSN 349
           I  +   D G +VCV  N  G   S 
Sbjct: 169 ITYTRKSDAGKYVCVGTNMVGERESE 194

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 247 SIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESH 306
           S+ +    P+I      L + +G+  +L CK    P   I W   G  ++ +        
Sbjct: 2   SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61

Query: 307 AVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
            +     G+ +    ++    +  D G +VCVA N  G   S
Sbjct: 62  ML--LPSGS-LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 74.0 bits (181), Expect = 9e-14
 Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 13/116 (11%)

Query: 239 SSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
               ++QL++ E    P IT +        G+++ + C  S  P  +I W  D   +   
Sbjct: 652 RHCVVRQLTVLERV-APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV-- 708

Query: 299 SMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                +S  V             L I     +D G + C A +  G         I
Sbjct: 709 ----EDSGIVLKDGNRN------LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 69.8 bits (170), Expect = 2e-12
 Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 15/114 (13%)

Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
            + + E       +     +E   G+ V +  K    P  +I W  +G+P+         
Sbjct: 321 FVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPL-------ES 373

Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
           +H + +           L I   +  D G +  +  N       ++ + +V+  
Sbjct: 374 NHTIKAG--------HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV 419

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 63.6 bits (154), Expect = 2e-10
 Identities = 13/101 (12%), Positives = 34/101 (33%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
             +   +  +E+  G+ + L C         I + ++    +++            +   
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 284

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
            +   S L I      D G + C A +   +  ++  +R+ 
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 60.2 bits (145), Expect = 2e-09
 Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 11/123 (8%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+++     L I+    + + C+     +  + WL+      +E         V    +G
Sbjct: 32  PRLSIQKDILTIKANTTLQITCRG----QRDLDWLWPNNQSGSEQ-----RVEVTECSDG 82

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLI 374
                  L I     +D G + C       ++     ++         V     + Y+  
Sbjct: 83  LFC--KTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITE 140

Query: 375 VSG 377
              
Sbjct: 141 NKN 143

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 59.4 bits (143), Expect = 3e-09
 Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKK----- 319
           +  E ++VSL C         +TW   G       +    +    + +   ++       
Sbjct: 560 QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSN 619

Query: 320 -----SELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
                  + + N+++ D G +VC+A+++          ++ + E 
Sbjct: 620 STNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER 664

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 21/127 (16%), Positives = 33/127 (25%), Gaps = 27/127 (21%)

Query: 255 PQITPSTFY---LEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYS 310
           PQI   +        Q G   +L C V AIP    I W +          S + S     
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480

Query: 311 TEEGTEIK-----------------------KSELLIYNSNIDDNGTFVCVAENQAGSTS 347
             E                            K+   +     + +  + C A N+ G   
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540

Query: 348 SNYTIRI 354
              +  +
Sbjct: 541 RVISFHV 547

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 54.8 bits (131), Expect = 8e-08
 Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 14/124 (11%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQNESMSASESHAVYSTEE 313
                   Y+   + K V + C  S       +   +       +    S          
Sbjct: 129 VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS------- 181

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVL 373
                K    I +  I   G   C A+    S  S   I +V+    +  V + P   + 
Sbjct: 182 -----KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI-VVVVGYRIYDVVLSPSHGIE 235

Query: 374 IVSG 377
           +  G
Sbjct: 236 LSVG 239

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
             Q   S        G++V+L+C     PE  ++W  DG PI+N      +      +++
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN---EEEDDEKHIFSDD 252

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
                 SEL I N + +D   +VC+AEN+AG   ++  +++  K
Sbjct: 253 S-----SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 11/104 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                +    E +EG++  ++C V +     I W   G  +        +          
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDV-----ILKKDVRFIVLSNN 155

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
                  L I      D GT+ C     A    +   I++++  
Sbjct: 156 Y------LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV 193

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 17/118 (14%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIP-EAKITWL-FDGVPIQNESMSASESHAVYSTE 312
            Q+       EI  G++   LC+V+    +  I+W   +G  +       S       + 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS- 61

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYT-------IRIVLKEENVEV 363
                  S L IYN+NIDD G + CV   + G+ S           +         E 
Sbjct: 62  -------STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEF 112

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 264 LEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
              +EG +V  +CK+    +  ++TW F    ++N            + E+G     + L
Sbjct: 11  AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSE------KYEITYEDGV----AIL 60

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
            + +    D+GT+ C   N  G  SS   + +
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 16/111 (14%)

Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
            L +      P+ +      EI  G NV++ C     P   + W+     +         
Sbjct: 196 NLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLT-------- 247

Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                      ++     ++  +++ D+  + CVA +  G   +   I + 
Sbjct: 248 --------PEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVK 290

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 11/123 (8%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P I        ++  +  ++LC  S  P+ +ITW  D +P+      ++ +  +     G
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVD----PSASNGRIKQLRSG 164

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLI 374
                  L I +S   D G + CVA N AG   S+    + ++ +NV            I
Sbjct: 165 A------LQIESSEETDQGKYECVATNSAGVRYSS-PANLYVRVQNVAPRFSILPMSHEI 217

Query: 375 VSG 377
           + G
Sbjct: 218 MPG 220

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+            G   S +C+ +  P+ ++TW   G  +     ++     +   E  
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-----NSQRFETIEFDESA 61

Query: 315 TEIKKSELLIYNSNI-DDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVF 367
             +    L I       D   + CVA+N  G  + +  + ++ +++        
Sbjct: 62  GAV----LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNI 111

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 6/101 (5%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P IT         EG++  + CK    P  +  W      +  E  ++S    + + E  
Sbjct: 93  PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY 152

Query: 315 TEIKKSELLIYNSNI-DDNGTFVCVAENQAGSTSSNYTIRI 354
                +EL I N  I +D G + C A N  GS S +  +R+
Sbjct: 153 -----TELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 24/119 (20%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKIT--WLFDGVPIQNESMSASESHAVYST 311
           EP+I  S   +       V+L C +++     +   W  +GV +       + +    S 
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVEL-------TATRKNASN 55

Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
                    E  I     +D+G + CV      +  +N TI       I   + +    
Sbjct: 56  --------MEYRINKPRAEDSGEYHCVYHF-VSAPKANATIEVKAAPDITGHKRSENKN 105

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 71.2 bits (174), Expect = 2e-13
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 9/114 (7%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           L +     V   C  +  P   I+WL +G   + E             ++ +      L+
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH---RIGGIKLRHQQWS------LV 183

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSG 377
           + +    D G + CV EN+ GS    YT+ ++ +  +  ++          V G
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 237

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 63.1 bits (153), Expect = 8e-11
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE---L 322
              G +V   CKV +  +  I WL       ++       +       G      E   L
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL 293

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV-LKEENVE 362
            ++N   +D G + C+A N  G +  +  + ++  +EE VE
Sbjct: 294 SLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 15/97 (15%)

Query: 264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
           L    G  V L C      P     W+ DG  +                 E   +    L
Sbjct: 18  LVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL--------------VPSERVLVGPQRL 63

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
            + N++ +D+G + C                      
Sbjct: 64  QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSS 100

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 67.0 bits (163), Expect = 2e-13
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 3/122 (2%)

Query: 248 IDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESM---SASE 304
           +   +       +    +   G +V L C+    P  +I W F+G    +        + 
Sbjct: 15  VPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGAR 74

Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVV 364
              V+      +   S + I     +D GT+ C A N           R+        V+
Sbjct: 75  LDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVL 134

Query: 365 TV 366
            +
Sbjct: 135 VL 136

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 28/184 (15%)

Query: 21  SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKI 80
           +C+     G   +      L T+ + +  +   L    NNL +L            L+ +
Sbjct: 36  ACLNN---GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL------PPELRTL 86

Query: 81  YLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT 140
            +S  +++ +      GL  L         L  +PS        L KL + GN +  +  
Sbjct: 87  EVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTSLPV 138

Query: 141 GAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGID 200
                   L  L +S   +  +          L  L   NN++T++      P+GL  + 
Sbjct: 139 L----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLPML---PSGLQELS 187

Query: 201 LHHN 204
           +  N
Sbjct: 188 VSDN 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 34/173 (19%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
           P  Q L  + N L +L            L K++    +++ +        + L +L  S 
Sbjct: 141 PGLQELSVSDNQLASLPAL------PSELCKLWAYNNQLTSLPM----LPSGLQELSVSD 190

Query: 109 NVLQTVPSD---------------TFPDYP-SLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
           N L ++P+                + P  P  L +L +SGN +  +        S L  L
Sbjct: 191 NQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELKEL 246

Query: 153 ELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP 205
            +S   +  +          L  L +  N++T +  S I  +    ++L  NP
Sbjct: 247 MVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 22/167 (13%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL 111
           Q L  + N L +L            L K++    R++ + +      + L +L  S N L
Sbjct: 184 QELSVSDNQLASLPTL------PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRL 233

Query: 112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD 171
            ++P         L +L +SGN +  +        S L++L + +  +  + ++  + L 
Sbjct: 234 TSLP----VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPES-LIHLS 284

Query: 172 SLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT-CDCLLIGLRR 217
           S   + L+ N ++  +        +     +  P    D       R
Sbjct: 285 SETTVNLEGNPLSERTLQA--LREITSAPGYSGPIIRFDMAGASAPR 329

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 265 EIQEGKNVSLLC-KVSAIPEAKITWLFDGVPIQ-NESMSASESHAVYSTEEGTEIKKSEL 322
            + +G+   L C     IPE  + W+ DGVP+   ++MS   S  V   + G       L
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN------L 172

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
           LI N    D G + C+A+N  G+  S+Y   IV 
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 64.9 bits (158), Expect = 6e-12
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+I      L +++ +  +L CKV   PE  I W  DG P+     +  +       ++G
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVS----TNEKKSHRVQFKDG 65

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGST-SSNYTIRI 354
                    +      D G + CVA+N+ G   S + +++I
Sbjct: 66  ALF--FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 69.8 bits (171), Expect = 4e-13
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 12/106 (11%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
              +   +F    + G+ ++  C+ S  PE  I+W  +G  I+       E+        
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-------ENEKYILKGS 246

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
                 +EL + N    D G +VC A N+AG       +++ ++  
Sbjct: 247 N-----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                     E ++G++  ++C+VS+ P   ++WL+    +   S      +        
Sbjct: 99  LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS-----DNRFAMLANN 153

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
                  L I N N  D G + C    +A        I +++
Sbjct: 154 N------LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 189

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
            Q+T S   +E+  G++    C     PE+   +   G  I +      +   V S    
Sbjct: 5   LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR--- 61

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
                  L IYN+NI+D G + C A +  G T  
Sbjct: 62  -------LTIYNANIEDAGIYRCQATDAKGQTQE 88

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 68.4 bits (167), Expect = 4e-13
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 25/118 (21%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           + QI       ++  G  + L C     P     W  + +P+ +E+              
Sbjct: 118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------- 163

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV------LKEENVEVVT 365
                K   ++   +++  GT+ C   N   S  S     I+         +N E  T
Sbjct: 164 -----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 19/94 (20%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
            +IT +     +  G+ V L C+ +  P  +  W      I N +               
Sbjct: 19  SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--------------- 63

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
                SEL+    ++ D G +VC   N      S
Sbjct: 64  ----TSELIFNAVHVKDAGFYVCRVNNNFTFEFS 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+I  ++  ++I+ G   +L       P+   TW              +    V +    
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAAL-----APELLVDAKSST 57

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           T      +   ++   D+G +    +N+ G   + + + +
Sbjct: 58  T-----SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
             ++  +   L + +G+ V L C V  + E  I W+ DG  +QN          +Y    
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQN-------LDQLYIPVS 54

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGS-TSSNYTI------RIVLKEENVEV 363
                   L + +    D G + C  E+   +  S    +         ++ +++ V
Sbjct: 55  EQHWIGF-LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAV 110

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 21/95 (22%)

Query: 264 LEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
           L +       L C+    PE   I W      I   +                    S  
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------------------PSPS 148

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
           ++  + +  +  F C A N  G  SS  T  + L+
Sbjct: 149 VLNVTGVTQSTMFSCEAHNLKGLASSR-TATVHLQ 182

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 70.7 bits (173), Expect = 5e-13
 Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P        L +  G++  L+C+ +  P+  + W+ +G P+Q+     +  +        
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQS-----APPNPNREVAGD 367

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           T      ++  ++ I     + C   N+ G   +N  + ++
Sbjct: 368 T------IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 10/124 (8%)

Query: 255 PQITPSTF-YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P IT  +     +    N+ + C+    P     W  +          A +         
Sbjct: 17  PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFN----IAKDPRVSMRRRS 72

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVL 373
           GT +   +        +  G + C A N+ G+  SN   RI L+     +     L+ V+
Sbjct: 73  GTLV--IDFRSGGRPEEYEGEYQCFARNKFGTALSN---RIRLQVSKSPLWPKENLDPVV 127

Query: 374 IVSG 377
           +  G
Sbjct: 128 VQEG 131

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 15/100 (15%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           PQ T S+    +  G ++ L C  S +P   I W   G  + +         A +     
Sbjct: 225 PQGTASS--QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS-------DKAKFENFNK 275

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  L I N + +D+G + C+A N+ GS     ++R+
Sbjct: 276 A------LRITNVSEEDSGEYFCLASNKMGSIRHTISVRV 309

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 14/87 (16%)

Query: 264 LEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
           + +QEG  ++L C     +P   I W+   +         ++   V     G       L
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP------ITQDKRVSQGHNGD------L 173

Query: 323 LIYN-SNIDDNGTFVCVAENQAGSTSS 348
              N    D    + C A      T  
Sbjct: 174 YFSNVMLQDMQTDYSCNARFHFTHTIQ 200

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 71.5 bits (175), Expect = 5e-13
 Identities = 27/128 (21%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
              T S  Y   + G N+SL C  ++ P A+ +WL DG   Q+                 
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT---------------- 425

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLI 374
                 EL I N    ++G + C A N A   S      I +  E  +          + 
Sbjct: 426 -----QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVE 480

Query: 375 VSGIISVC 382
               ++  
Sbjct: 481 DKDAVAFT 488

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 66.1 bits (161), Expect = 3e-11
 Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 23/138 (16%)

Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
            L++      P I+P       + G+N++L C  ++ P A+ +W  +G   Q+       
Sbjct: 196 ILNVLYGPDAPTISPLN--TSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST------ 247

Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVV 364
                           EL I N  ++++G++ C A N     +      I +  E  +  
Sbjct: 248 ---------------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPF 292

Query: 365 TVFPLEYVLIVSGIISVC 382
                   +     +++ 
Sbjct: 293 ITSNNSNPVEDEDAVALT 310

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 65.4 bits (159), Expect = 4e-11
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 21/124 (16%)

Query: 231 ICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF 290
           +C +   +S+     +++D L        S        G N++L C  ++ P  + +W  
Sbjct: 536 VCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI 595

Query: 291 DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY 350
           +G+P Q+                        L I     ++NGT+ C   N A   +++ 
Sbjct: 596 NGIPQQHT---------------------QVLFIAKITPNNNGTYACFVSNLATGRNNSI 634

Query: 351 TIRI 354
              I
Sbjct: 635 VKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 14/143 (9%)

Query: 231 ICSVPPRLSSVTIKQLSIDELACEPQITPSTF-YLEIQEGKNVSLLCKVSAIPEAKITWL 289
              V                    P+ + S+     +++   V+  C+      A   W 
Sbjct: 87  TLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWW 145

Query: 290 FDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
            +   +              S    T      L ++N   +D  ++ C  +N   +  S+
Sbjct: 146 VNNQSLP------VSPRLQLSNGNRT------LTLFNVTRNDTASYKCETQNPVSARRSD 193

Query: 350 YTIRIVLKEENVEVVTVFPLEYV 372
             I  VL   +   ++     Y 
Sbjct: 194 SVILNVLYGPDAPTISPLNTSYR 216

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.0 bits (132), Expect = 7e-08
 Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 6/123 (4%)

Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESM------SASESHAVY 309
           ++T  +    + EGK V LL           +W        N  +      +   +    
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPL 369
            +        + LLI N   +D G +                   V  E     ++    
Sbjct: 61  YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120

Query: 370 EYV 372
           + V
Sbjct: 121 KPV 123

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 239 SSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
           +  T+  +++     +P IT +     +++   V+L C+          W  +   +   
Sbjct: 275 NRTTVTTITVYAEPPKPFITSNNSN-PVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVS 332

Query: 299 SMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
                      S +  T      L + +   +D G + C  +N+     S+  I  VL
Sbjct: 333 P------RLQLSNDNRT------LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVL 378

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 13/95 (13%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                S     +++   V+  C+  A       W  +G  +              S    
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLP------VSPRLQLSNGNR 520

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
           T      L ++N   +D   +VC  +N   +  S+
Sbjct: 521 T------LTLFNVTRNDARAYVCGIQNSVSANRSD 549

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 71.3 bits (174), Expect = 5e-13
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 20/114 (17%)

Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
             T S+   EI + +      +  A P+ + TW F       E       +         
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGY--------- 378

Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEV 363
                 +  + ++    G ++  AEN     +  +T+      +++ +    + 
Sbjct: 379 -----SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQA 427

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 67.4 bits (164), Expect = 9e-12
 Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                    +E+    +++L   V A       W+F    +  +     ++  V S    
Sbjct: 49  SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS---- 104

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  ++I        G ++   +++A + +  +T+ I
Sbjct: 105 -------MVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 62.4 bits (151), Expect = 3e-10
 Identities = 16/119 (13%), Positives = 25/119 (21%), Gaps = 14/119 (11%)

Query: 260 STFYLEIQ-------EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
             F L I+       E       C     P    TW        N +   +E        
Sbjct: 406 KMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKAN 465

Query: 313 EGTEIK-KSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
                +  S   +  S         C A N  G++     +        +         
Sbjct: 466 RKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGGTKHHH 524

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 62.0 bits (150), Expect = 4e-10
 Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           PQ T     L ++ G+ + + CK   +     +TW  +   ++  +     ++    +  
Sbjct: 230 PQTTLPQ--LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY----STN 283

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
            T I+     + +   +D G + C +      ++ 
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL 318

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 23/124 (18%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
              T    Y    E +  +L+C   ++PE  + W+      +       ES AV   EE 
Sbjct: 141 LLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGE---SCKEESPAVVKKEEK 196

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAG-STSSNYTIRIVLKEENVEVVTVFPLEYVL 373
              +                  C A N+ G   +  +TI       ++       L  + 
Sbjct: 197 VLHE-----------LFGTDIRCCARNELGRECTRLFTI-------DLNQTPQTTLPQLF 238

Query: 374 IVSG 377
           +  G
Sbjct: 239 LKVG 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.2 bits (174), Expect = 6e-13
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 30/162 (18%)

Query: 49  PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH 108
           P   VL+ T N L +L           +L+ +     R+S +         +L  LD  +
Sbjct: 80  PQITVLEITQNALISLPEL------PASLEYLDACDNRLSTLPEL----PASLKHLDVDN 129

Query: 109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP--LSYLVTLELSKCGIEVIEDAA 166
           N L  +P         L  +    N +  +      P   + L  L +    +  + +  
Sbjct: 130 NQLTMLPELP----ALLEYINADNNQLTML------PELPTSLEVLSVRNNQLTFLPE-- 177

Query: 167 FVGLDSLEWLKLDNNKITT----ISGSNILPTGLHGIDLHHN 204
               +SLE L +  N + +       ++             N
Sbjct: 178 --LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN 217

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 21/149 (14%)

Query: 59  NNLKTLHNEKFQKMG-LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSD 117
           N +   + + F              +R     +  +    +    +L  +   L ++P +
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDN 77

Query: 118 TFPDYPSLMKLTLSGNPIKQIKTGAFQP--LSYLVTLELSKCGIEVIEDAAFVGLDSLEW 175
                P +  L ++ N +  +      P   + L  L+     +  + +       SL+ 
Sbjct: 78  LP---PQITVLEITQNALISL------PELPASLEYLDACDNRLSTLPEL----PASLKH 124

Query: 176 LKLDNNKITTISGSNILPTGLHGIDLHHN 204
           L +DNN++T +     LP  L  I+  +N
Sbjct: 125 LDVDNNQLTMLPE---LPALLEYINADNN 150

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 15/111 (13%)

Query: 100 NLVDL--DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP----LSYLVTLE 153
           N   L  +  +N +    +D F  +    K  L G    +  +         ++    L+
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVS---LLKECLINQFSELQ 65

Query: 154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
           L++  +  + D        +  L++  N + ++      P  L  +D   N
Sbjct: 66  LNRLNLSSLPDNLP---PQITVLEITQNALISLPEL---PASLEYLDACDN 110

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 64.4 bits (157), Expect = 6e-13
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 19/105 (18%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           E Q+        +  G  V+L C+V A P  +I W+ DGVP+                  
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-------------- 55

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
                   L++      D GT+ CVA + +     +  + I + E
Sbjct: 56  -----SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 20/105 (19%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           + QI       ++  G  + L C     P     W  + +P+ +E+              
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------- 48

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
                K   ++   +++  GT+ C   N   S  S   + I++ E
Sbjct: 49  -----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK-KVEIIIDE 87

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 64.0 bits (156), Expect = 7e-13
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 15/108 (13%)

Query: 247 SIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESH 306
           ++ E A    +      L +  G  + L C++       I WL DGV +           
Sbjct: 2   TLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVES-------- 52

Query: 307 AVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                   T I   E+ + +S   D+G + CV  + +GS ++ +++ +
Sbjct: 53  ------NRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
                       +  G  + L C++       I WL DGV +              +   
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQL--------------AESN 47

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
            T I   E+ + +S   D+G + CV  + +GS ++ +++ + 
Sbjct: 48  RTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 69.9 bits (171), Expect = 9e-13
 Identities = 23/124 (18%), Positives = 34/124 (27%), Gaps = 13/124 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
            +    T  +    G  V L C+V   P   I W  +   +            V     G
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNP----IPGDSRVVVLPSG 177

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL---KEENVEVVTVFPLEY 371
                  L I      D+G + C A N A + + N     +L              P   
Sbjct: 178 A------LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV 231

Query: 372 VLIV 375
           + I 
Sbjct: 232 IAIE 235

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 29/115 (25%), Positives = 40/115 (34%), Gaps = 18/115 (15%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                    +   EGK+  L C VS  P    TWL     IQ            YS   G
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ-------LRSKKYSLLGG 274

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEV 363
                S LLI N   DD+GT+ CV   +  + S++  +        +    N+  
Sbjct: 275 -----SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYA 324

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P        L   E  ++   C VS  P   + W+ +G  +         S         
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV-------IPSDYFQIVGGS 365

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                  L I      D G + CVAEN+AG+  S+  + + 
Sbjct: 366 N------LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 7/105 (6%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
                         G NV L C   +      I W  DG+ +        +         
Sbjct: 22  LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILA----LGMDDRKQQLPNG 77

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
              I    +L    +  D G + C A      +  + T ++++  
Sbjct: 78  SLLI--QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 69.9 bits (171), Expect = 9e-13
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           + +++G++V++ CKV+ +P   + W  +  P+              +  +        L+
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR---------ATVTDSG------LV 363

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           I      D G + C A N+ G       +++
Sbjct: 364 IKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 9/105 (8%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           EP     +  +  + G    + C   + P     +  +G  +          H   S   
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG-- 269

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
                   LL   +  +D G + C  +N  G     +++++ +  
Sbjct: 270 ------KRLLFKTTLPEDEGVYTCEVDNGVGKPQK-HSLKLTVVS 307

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 19/118 (16%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P +      +  +E     L C +    +  K +W  DG        +  E +A    +E
Sbjct: 7   PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSY-----NWQEHNAALRKDE 61

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN-------YTIRIVLKEENVEVV 364
           G+      L+       D G + C AE  AG  SS        Y I    K      +
Sbjct: 62  GS------LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI 113

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 10/118 (8%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
                 T      EG+   L C + +A P+  ITW          +        + +  +
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 160

Query: 314 GTEIKKSELLIYN---SNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFP 368
           G       L        ++ D   +VC A+N A           +             
Sbjct: 161 GN------LYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGE 212

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 70.1 bits (171), Expect = 1e-12
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P ++ S     ++EG+  ++ C +  +      TW  +    + +    S  H  ++ E 
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYER 271

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
                 + L I ++ ++D+G F+C A N  GS +   T+ +V K
Sbjct: 272 Q-----ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK 310

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 68.9 bits (168), Expect = 3e-12
 Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 8/102 (7%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+I             N  L C  +  PE  I W F     Q  S S            G
Sbjct: 413 PEIL------TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466

Query: 315 TEIKK--SELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
               K   +  I +S    NGT  C A N  G TS+ +    
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF 508

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 67.8 bits (165), Expect = 5e-12
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 15/120 (12%)

Query: 255 PQITPSTFY---LEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYS 310
             I         + + +G+NV L+ +  A P+     W++      +            S
Sbjct: 311 GFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD-----KWEDYPKS 365

Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
             E      SEL +      + GT+  +  N   + +  + +       I+  +  V  +
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGM 425

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 54.3 bits (130), Expect = 9e-08
 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 25/113 (22%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P I P    L ++ G  + LLC         + W F+ +   NE+               
Sbjct: 37  PSIHPGKSDLIVRVGDEIRLLCTD----PGFVKWTFEILDETNEN--------------- 77

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI---RIVLKEENVEVV 364
              K++E +   +   + G + C  ++   ++   +     ++ L + ++   
Sbjct: 78  ---KQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGK 127

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 14/123 (11%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
            ++      L  +E  +  + C ++  PE     L              +   +   + G
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLT-DPEVTNYSLKGC----QGKPLPKDLRFIPDPKAG 169

Query: 315 TEIKKSELLIYN-SNIDDNGTFVCVAENQAGS-TSSNYTIRIVLKEENVEVVTVFPLEYV 372
                  ++I +           C  + +  S  S  + +++    + V VV+V    Y+
Sbjct: 170 -------IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYL 222

Query: 373 LIV 375
           L  
Sbjct: 223 LRE 225

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 11/113 (9%)

Query: 255 PQIT-PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P++  P   Y    EG  V++ C+V A P A I+W  DG  +       S +++      
Sbjct: 20  PKLQGPVAVY--TWEGNQVNITCEVFAYPSATISWFRDGQLLP------SSNYSNIKIYN 71

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV 366
                 S L +   + +D G + C A N+ G  S  + +       +  +  V
Sbjct: 72  TPS--ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV 122

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 68.2 bits (166), Expect = 1e-12
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 8/130 (6%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           PQ T     +++         C      P A+ITW  D   + N S        V     
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTS-------QVPGFLS 170

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVL 373
           GT    S  ++  S+  D     C  E+++       T+ + +       ++ +   + L
Sbjct: 171 GTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYL 230

Query: 374 IVSGIISVCS 383
             +     C 
Sbjct: 231 GQNEATLTCD 240

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 61.3 bits (148), Expect = 3e-10
 Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 18/104 (17%)

Query: 252 ACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYS 310
             E  I+              +L C   + PE     W     P+               
Sbjct: 216 PPEVSISGYD-NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP-------------- 260

Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  + ++LLI   +   N T +C   N  G+  +  T+++
Sbjct: 261 --PFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 13/106 (12%)

Query: 264 LEIQEGKNVSLLCKVSAIPE-----AKITWLFDGVPIQ--------NESMSASESHAVYS 310
           +    G +V+L C +          +++TW   G              S S S+     +
Sbjct: 10  VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69

Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
              G E++ + L ++   ++D G + C+       + S      VL
Sbjct: 70  ARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 14/100 (14%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P         E   G ++   C  S  P   + WL DG P+              +++  
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL--------------ASQNR 340

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
            E+   EL      ++D+G + CVAEN+ G+  ++  + +
Sbjct: 341 IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 19/127 (14%)

Query: 255 PQIT---PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYST 311
           P        T + E    + V+L C+  A P A   W  +G  ++          + Y  
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELK------MGPDSRYRL 58

Query: 312 EEGTEIKKSELLIYNS-NIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLE 370
             G       L+I N     D G++ CVA N  G+  S       L+   ++  +    +
Sbjct: 59  VAGD------LVISNPVKAKDAGSYQCVATNARGTVVSR---EASLRFGFLQEFSAEERD 109

Query: 371 YVLIVSG 377
            V I  G
Sbjct: 110 PVKITEG 116

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 16/101 (15%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                         G+ V+L C     P  +I W        ++ +S+            
Sbjct: 208 SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL--------- 258

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                  L I N + +D GT+ C AEN  G  +    I I 
Sbjct: 259 -------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 15/112 (13%)

Query: 264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
           ++I EG  V   C      P     WL +  P    +    +     S   G       L
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPA----DGRRFVSQTTGN------L 160

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTS----SNYTIRIVLKEENVEVVTVFPLE 370
            I  +   D G + C A +     +    S ++   +  E+  +       +
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 11/92 (11%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           L ++  +     C+VS   +    W  +GV ++        S  +  +  G   +  +L+
Sbjct: 18  LTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVR-------PSKRITISHVG---RFHKLV 66

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           I +   +D G +  V +  A S S+      +
Sbjct: 67  IDDVRPEDEGDYTFVPDGYALSLSAKLNFLEI 98

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 13/89 (14%)

Query: 265 EIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           E+    NV L CKV+ I  E  I W  D   I  +          +  ++G       LL
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK--------HDFKDGI----CTLL 174

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTI 352
           I   +  D G +  + ++  G   S   +
Sbjct: 175 ITEFSKKDAGIYEVILKDDRGKDKSRLKL 203

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 264 LEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
           +EI E   V    +   +   AK+ ++F+   I          + ++       I   E+
Sbjct: 12  VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE-----GPKYKMHIDRNTGII---EM 63

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSS 348
            +     +D GT+    ++   +  S
Sbjct: 64  FMEKLQDEDEGTYTFQLQDGKATNHS 89

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 14/94 (14%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           + +   ++V   CK +  P+    WL +G P+               T +  +I++  L 
Sbjct: 305 IHVAMEESVFWECKANGRPKPTYRWLKNGDPL--------------LTRDRIQIEQGTLN 350

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
           I   N+ D G + CVAEN+ G   S+  + ++ +
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 63.3 bits (154), Expect = 9e-11
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 16/99 (16%)

Query: 255 PQIT---PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYST 311
           P          +    E K V L C+V   P+  I W  +G  +             YS 
Sbjct: 6   PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVD------IGMDFRYSV 59

Query: 312 EEGTEIKKSELLIYNSN-IDDNGTFVCVAENQAGSTSSN 349
            +G+      LLI N N   D GT+ C+A N  G+  S 
Sbjct: 60  VDGS------LLINNPNKTQDAGTYQCIATNSFGTIVSR 92

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEE 313
                    +  ++G  V L C     P   I W   DG PI  ++     +        
Sbjct: 206 KIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG------- 258

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                   L I N   +D G++ CVAEN  G   +   +  
Sbjct: 259 -------ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF 292

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 13/86 (15%)

Query: 264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
           + ++ G+ + LLC       E    W+F+  P         ++    S E G       L
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS------YQDNRRFVSQETGN------L 159

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSS 348
            I      D G + CV  N   +   
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKV 185

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 68.2 bits (166), Expect = 4e-12
 Identities = 12/100 (12%), Positives = 33/100 (33%), Gaps = 11/100 (11%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                    +E+    +++L   V A       W+F    +  +     ++  V      
Sbjct: 49  SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV------ 102

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  ++I        G ++   +++A + +  +T+ I
Sbjct: 103 -----VSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 64.3 bits (156), Expect = 6e-11
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 14/100 (14%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
              T S+   EI + +      +  A P+ + TW F       E       +        
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGY-------- 378

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  +  + ++    G ++  AEN     +  +T+ I
Sbjct: 379 ------SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 62.8 bits (152), Expect = 2e-10
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 12/115 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCK-VSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           PQ T    +L  + G+ + + CK V       +TW  +   ++  +     ++    +  
Sbjct: 230 PQTTLPQLFL--KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY----STN 283

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY-----TIRIVLKEENVEV 363
            T I+     + +   +D G + C +      ++         I      E+ E+
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEI 338

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
              T    Y    E +  +L+C   ++PE  + W+      ++              E  
Sbjct: 141 LLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESC-----------KEESP 188

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
             +KK E +++           C A N+ G   +      +
Sbjct: 189 AVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDL 226

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
           ++ +G  + L  +++   +A++ WL +G  IQ        S + Y  E      K  L I
Sbjct: 27  QVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQ-------MSGSKYIFES--IGAKRTLTI 76

Query: 325 YNSNIDDNGTFVCVAENQAGSTS 347
              ++ D+  + CV   +  ST 
Sbjct: 77  SQCSLADDAAYQCVVGGEKCSTE 99

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+   +       EG  +++ C V + P A I W  D + +  ++   + +   YST   
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKN---TTNLKTYSTG-- 155

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
              +K  L I  ++ +D G + C A N  G+    Y + + 
Sbjct: 156 ---RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 10/117 (8%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           +P I          E   V+L+C     P  +ITW              S    +    +
Sbjct: 1   QPHIIQLKN-ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI------RIVLKEENVEVV 364
                 S L I +  + D+G + C A ++ G    +  +      + +  +      
Sbjct: 60  HG---SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSW 113

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 62.6 bits (152), Expect = 4e-12
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 255 PQIT-PSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTE 312
           P I+   T +     G+   + C + + P   +I W +    +     S +       T 
Sbjct: 15  PIISSTQTQH--ALHGEKGQIKCFIRSTPPPDRIAWSWKENVL----ESGTSGRYTVETI 68

Query: 313 EGTEIKKSELLIYNSNIDDNGT-FVCVAENQAGSTSSNYTIRI 354
              E   S L I N    D  T + C A N  GS +    ++ 
Sbjct: 69  STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
            +  P+   ++ + G + +L C+V+   + ++TW  DG  +         S  V     G
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLS-------SSSKVRVEAVG 63

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
                  L++  +   + G + C A  Q  S  
Sbjct: 64  ---CTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 5e-12
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 48  DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRIS----VIDSKAFRGLTNLVD 103
            P  +VL     +      E+ +      L  + LS         +I +        L  
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRV--FPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 104 LDFSHNVLQTVP---SDTFPDYPSLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCGI 159
           L   +  ++T     S        L  L LS N ++      +    S L +L LS  G+
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 160 EVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT 207
           + +          L  L L  N++      + LP  +  + L  NP+ 
Sbjct: 266 KQVPKGLPA---KLSVLDLSYNRLDRNPSPDELPQ-VGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 5e-11
 Identities = 26/145 (17%), Positives = 39/145 (26%), Gaps = 31/145 (21%)

Query: 42  TVVEGMDPNTQVLDYTGNNLKTLHNEKFQ-KMGLVNLQKIYLSRCRIS-VIDSKAFRGLT 99
            +     P  QVL      ++T            V LQ + LS   +     + +    +
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGI 159
            L  L+ S   L+ VP         L  L LS N + +       P              
Sbjct: 254 QLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN------PS------------- 291

Query: 160 EVIEDAAFVGLDSLEWLKLDNNKIT 184
                     L  +  L L  N   
Sbjct: 292 -------PDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 29/166 (17%), Positives = 48/166 (28%), Gaps = 13/166 (7%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR----GLTNLVDLDFS 107
           Q L      +         +    +L  + L     +  D+            L  L  +
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ----IKTGAFQPLSYLVTLELSKCGIEVIE 163
                    +    +P+L  L LS NP       I          L  L L   G+E   
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 164 D---AAFVGLDSLEWLKLDNNKITTI--SGSNILPTGLHGIDLHHN 204
               A       L+ L L +N +     + S   P+ L+ ++L   
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           L ++   N +L+CKV+  P+  + W   G  I  +       + +   + G      +L+
Sbjct: 14  LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD----GLKYRIQEFKGGY----HQLI 65

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSS 348
           I +   DD   +   A NQ GS S 
Sbjct: 66  IASVTDDDATVYQVRATNQGGSVSG 90

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 65.6 bits (160), Expect = 9e-12
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 14/106 (13%)

Query: 255 PQITPSTFY-----LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309
            +I           +    G+ VS+    S  P+  ITW      I N     +  + V 
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN-----NGHYQVI 154

Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
            T   T    S +        D G +V  A+N+ G       + + 
Sbjct: 155 VTRSFT----SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 62.3 bits (151), Expect = 7e-12
 Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 264 LEIQEGKNVSLLCKVSAIPEA---KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
             ++ G++++ + KV A        I W F G  +   S +        + E  + +   
Sbjct: 17  GTVKVGEDITFIAKVKAEDLLRKPTIKW-FKGKWMDLASKAGKHLQLKETFERHSRVYTF 75

Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFP 368
           E+ I  +  +  G + C    +    S ++ + +         +   P
Sbjct: 76  EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGP 123

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 61.2 bits (149), Expect = 7e-12
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           +E+  G+      ++S  P+    W   G P+         S      E+G   KK  L+
Sbjct: 15  VEVFVGETAHFEIELSE-PDVHGQWKLKGQPLA-------ASPDCEIIEDG---KKHILI 63

Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
           ++N  +   G     A N   +
Sbjct: 64  LHNCQLGMTGEVSFQAANTKSA 85

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 65.5 bits (159), Expect = 9e-12
 Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P ++       +++G   +++C +  +       WL      Q+ +     S   +   +
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNS---WHRGD 245

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
               ++  L I ++ +DD+G F+C A N  GS +   T+++V
Sbjct: 246 FNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 16/112 (14%), Positives = 41/112 (36%), Gaps = 14/112 (12%)

Query: 266 IQEGKNVSLLCKVSAIPEAKITWL-FDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
            +E  +  + C ++    ++ + +  DG  +       ++   V + + G  IK  +   
Sbjct: 103 GKEDSDALVRCPLTDPQVSQYSLIECDGKSLP------TDLTFVPNPKAGITIKNVK--- 153

Query: 325 YNSNIDDNGTFVCVAENQAGS-TSSNYTIRIVLKEENVEVVTVFPLEYVLIV 375
                       C A+       S  +T+++    + + VV+V    ++L  
Sbjct: 154 ---RAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKK 202

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 21/96 (21%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P I P+   L ++ G  +SL C         + W F     +                  
Sbjct: 13  PSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEM----------------- 51

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY 350
            E KK+E +   +     GT+ C   N   S+   +
Sbjct: 52  VENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVF 87

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 66.0 bits (160), Expect = 1e-11
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 17/128 (13%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P   P T+ L   +   + L C +  A     ITW  +   +  +               
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTK------------ 176

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVL 373
                   L+I+N  ++D+G + C          ++  +        + V+      + L
Sbjct: 177 -YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCK---ILTVIPSQDHRFKL 232

Query: 374 IVSGIISV 381
           I+   I+V
Sbjct: 233 ILDPKINV 240

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 10/122 (8%)

Query: 238 LSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAK----ITWLFDGV 293
           +     K L++               + +  G+  ++ C   +         I W     
Sbjct: 212 IVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSG 271

Query: 294 PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG-TFVCVAENQAGSTSSNYTI 352
            I        +            I ++ L   N   +  G T+ C   N     +   T+
Sbjct: 272 WIIG-----LDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326

Query: 353 RI 354
            +
Sbjct: 327 VL 328

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 63.4 bits (154), Expect = 1e-11
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 14/101 (13%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
              I      +    G+NV+L C     P   I W     P+         S A  ST  
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP--------STAEISTSG 164

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                   L I+N  ++D G + C AEN  G       I +
Sbjct: 165 AV------LKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 253 CEPQITPSTFYLEIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASESHAVYS 310
            +P        + ++EGK + LLC        +    WL +  P+    ++  +   V S
Sbjct: 7   LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVF---ITMDKRRFV-S 62

Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
              G       L I N    D G + C   + + + S       ++
Sbjct: 63  QTNGN------LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLI 102

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 65.4 bits (159), Expect = 2e-11
 Identities = 16/133 (12%), Positives = 40/133 (30%), Gaps = 9/133 (6%)

Query: 241 VTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNES 299
           +        E         S   +EI E   V    +       AK+ ++F+   I    
Sbjct: 94  LKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE-- 151

Query: 300 MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
                 + ++           E+ +     +D GT+    ++   +  S   +   + ++
Sbjct: 152 ---GPKYKMHIDRNT---GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 205

Query: 360 NVEVVTVFPLEYV 372
             +       E++
Sbjct: 206 LQKEAEFQRQEWI 218

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P        ++     +++  C     P+++ +W  D V  ++     S    V      
Sbjct: 4   PFTKEVVVNVDDDGVISLNFECDKMT-PKSEFSWSKDYVSTED-----SPRLEVE----- 52

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
           ++  K+++   +  +DD G + C   +  G  SS       LK 
Sbjct: 53  SKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKR 96

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 14/120 (11%)

Query: 234 VPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDG 292
           V  +L      Q         P         E+    NV L CKV+ I  E  I W  D 
Sbjct: 202 VFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDE 260

Query: 293 VPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI 352
             I  +          +  ++G       LLI   +  D G +  + ++  G   S   +
Sbjct: 261 REISVDEK--------HDFKDGI----CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P            E  +  +   V   P   + WLF+G  +   S   +E     + E  
Sbjct: 4   PASVQL---HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET- 59

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
             ++   L +      +NG +  +A N  G  S++     +  
Sbjct: 60  --VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 63.3 bits (153), Expect = 2e-11
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAK--ITWLFDGVPIQNESMSASESHAVYST 311
           +  ++PS   +E+  G+ + L C             W +     Q++ +   +      +
Sbjct: 106 DVVLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 164

Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           E   +   S L I      D G + C A +   +  ++  +R+ 
Sbjct: 165 E--MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 12/124 (9%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
                    Y+   + K V + C  S I    ++          +      +   + +++
Sbjct: 9   SVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARY---PEKRFVPDGNRISWDSKK 64

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVL 373
           G         I +  I   G   C A+    S  S   I +V+    +  V + P   + 
Sbjct: 65  G-------FTIPSYMISYAGMVFCEAKINDESYQSIMYI-VVVVGYRIYDVVLSPSHGIE 116

Query: 374 IVSG 377
           +  G
Sbjct: 117 LSVG 120

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
             +  GK + L C++S        W  +G+P+Q       ES  +   ++G   +  +L+
Sbjct: 17  QTVNLGKEICLKCEISENIP--GKWTKNGLPVQ-------ESDRLKVVQKG---RIHKLV 64

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
           I N+  +D G +V   +    +  +   + 
Sbjct: 65  IANALTEDEGDYVFAPDAYNVTLPAKVHVI 94

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 254 EPQIT--PSTFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYS 310
           E      P    +    G   +L C++       ++ WL DG  ++    + ++      
Sbjct: 2   ESPFVGNPGN--ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59

Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
            ++   +    L I +  + D G + C+      +  S
Sbjct: 60  EQDDWIVVSQ-LRITSLQLSDTGQYQCLVFLGHQTFVS 96

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 61.1 bits (148), Expect = 8e-11
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 18/103 (17%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P          +      +L C+    PE   + WL D VP+                  
Sbjct: 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP-------------- 152

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
                  +  ++   ++   +F C A N  G T+S      VL
Sbjct: 153 ---GHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVL 192

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
                G+ V L C+VS   +A + W  +G  I                 EG   KK  L+
Sbjct: 17  TTAYCGERVELECEVSE-DDANVKWFKNGEEIIP-----GPKSRYRIRVEG---KKHILI 67

Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
           I  +   D   +  +      S
Sbjct: 68  IEGATKADAAEYSVMTTGGQSS 89

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 60.5 bits (146), Expect = 2e-11
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
            ++PS   +E+  G+ + L C         I + ++    +++            +    
Sbjct: 11  VLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 69

Query: 316 EIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
           +   S L I      D G + C A +   +  ++  +R+  K
Sbjct: 70  KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 64.7 bits (157), Expect = 2e-11
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTE 316
           ++P+   +E+  G  + L+C V+        W ++G  I  +     E +          
Sbjct: 212 VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 271

Query: 317 IKKSE--LLIYNSNI-DDNGTFVCVAENQAGSTSS 348
                  L I           F C A+N  G  ++
Sbjct: 272 RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 306

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 19/98 (19%)

Query: 266 IQEGKNVSLLC------KVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKK 319
           +    +  L+C      K       K+ W  D  P+  +++                  K
Sbjct: 115 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-------------FSGVK 161

Query: 320 SELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
             L++ N      G + C A           T  I   
Sbjct: 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 12/123 (9%)

Query: 268 EGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN 326
             +     C ++       ITW  D          ++E  +     +        L    
Sbjct: 19  ANEIDVRPCPLNPNEHKGTITWYKDDSKT----PVSTEQASRIHQHKEK------LWFVP 68

Query: 327 SNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGIIS-VCSLV 385
           + ++D+G + CV  N +       + + V  E N+        +  L V+G    VC  +
Sbjct: 69  AKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYM 128

Query: 386 LIF 388
             F
Sbjct: 129 EFF 131

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 60.0 bits (145), Expect = 2e-11
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAK---ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
            E+  G +++   +V+     K   + W F G  +   S          S +  +++   
Sbjct: 14  GEVTVGGSITFSARVAGASLLKPPVVKW-FKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72

Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           EL I ++     G++ C    +     SN+ + + 
Sbjct: 73  ELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           +++QEG + +  C++S      + W  D  P+       +E + +   + G       L 
Sbjct: 23  VDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA-----NELNEI-DAQPGGYHV---LT 73

Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
           +    + D+GT    A +Q  S
Sbjct: 74  LRQLALKDSGTIYFEAGDQRAS 95

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 64.3 bits (156), Expect = 3e-11
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
             ++ +     +++G+N++L+C V         W +            ++          
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYH-- 239

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
               +S L I ++ ++D+GT+ C              I I + E
Sbjct: 240 ---IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 16/120 (13%)

Query: 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTE 316
           +TP    L +       L C       A + W         E   A +            
Sbjct: 3   VTPPGPELVLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFS-------- 50

Query: 317 IKKSELLIYNSNIDDNGTFVCVAENQAGS-TSSNYTIRIVLKEENVEVVTVFPLEYVLIV 375
              S L + N    D G + C   +  G  T     + I + +  V  +     E  + +
Sbjct: 51  ---SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFL 107

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 22/126 (17%)

Query: 259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIK 318
               ++ + E   +++ C+V+  P+  +T       +             Y  + G    
Sbjct: 100 AEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDV--------ALPVPYDHQRGF--- 147

Query: 319 KSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGI 378
                   S I ++ +++C          S+      L+  ++  V+V  ++ V+     
Sbjct: 148 --------SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSIN-VSVNAVQTVVRQGEN 198

Query: 379 ISV-CS 383
           I++ C 
Sbjct: 199 ITLMCI 204

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 62.0 bits (150), Expect = 3e-11
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEE 313
           P++        I EG+   L+CK  ++P      W           M+ SES    S+ +
Sbjct: 84  PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143

Query: 314 GTEIKKSELLIYNSNI-DDNGTFVCVAENQAGSTSSNYTIRI 354
           G    +SEL I N N+  D G + C   +  GS  +  T+R+
Sbjct: 144 G----RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 49.3 bits (117), Expect = 7e-07
 Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 22/102 (21%)

Query: 268 EGKNVSLLCKVSA--IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
            G  + L C ++          WL  GV ++ +++                    +    
Sbjct: 12  LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----------------GQKTEFK 54

Query: 326 NSNIDDNGTFVCVAENQAGSTSS---NYTIRIVLKEENVEVV 364
             + D  G + CV   +   T++   +   R+   + +  + 
Sbjct: 55  VDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHIN 96

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
             +  G++V L C++S      + WL D   I+      S+ + V    EG     + L+
Sbjct: 18  QWVAPGEDVELRCELSRAG-TPVHWLKDRKAIRK-----SQKYDV--VCEG---TMAMLV 66

Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
           I  +++ D G + C  E    +
Sbjct: 67  IRGASLKDAGEYTCEVEASKST 88

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 60.1 bits (145), Expect = 3e-11
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 8/105 (7%)

Query: 251 LACE----PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKIT--WLFDGVPIQNESMSASE 304
             C+    PQIT          G +VS  C  ++  ++ +T  W  D   +Q+       
Sbjct: 3   FVCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQD--AEMEN 60

Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
              + +         + L + N      G + CV  N  GS+ S 
Sbjct: 61  YAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 29/109 (26%)

Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
            L I E   +P+I+            N +L C+V    + ++    DG  ++        
Sbjct: 99  DLKIQERVSKPKIS--------WTCINTTLTCEVMNGTDPELNLYQDGKHLKLS------ 144

Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
                            ++ +      +  F C A N+    SS   + 
Sbjct: 145 ---------------QRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 13/97 (13%)

Query: 269 GKNVSLLCKVSAIPEAK--ITWLFDG-----VPIQNESMSASESHAVYSTEEGTEIKKSE 321
           G++++L      + +    I W            + E  +  E       + GT      
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT------ 67

Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
           L I +   DD   +     +  G         + ++E
Sbjct: 68  LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQE 104

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 20/100 (20%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                      +  G+     C+ +  P   ++W+ DG  I +                 
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--------------- 352

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                S L I +   +D G + C   N   S  ++  +++
Sbjct: 353 -----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 58.8 bits (142), Expect = 3e-09
 Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 18/145 (12%)

Query: 225 PMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEA 284
            +  +   S       +T    S       P +      LE+     +SLLC     P  
Sbjct: 187 RLTGETRLSATKGRLVITEPISSSAPRT--PALVQKP--LELMVAHTISLLCPAQGFPAP 242

Query: 285 KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG 344
              W         +            +          L+I ++ ++D+G ++CV  N  G
Sbjct: 243 SFRWYKFIEGTTRKQAVVLNDRVKQVS--------GTLIIKDAVVEDSGKYLCVVNNSVG 294

Query: 345 STSSNYTI------RIVLKEENVEV 363
             S    +         +      V
Sbjct: 295 GESVETVLTVTAPLSAKIDPPTQTV 319

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 29/126 (23%)

Query: 255 PQIT--PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF-DGVPIQNESMSASESHAVYST 311
           P     P+   ++        + CK S  P  +I W+  DG  + +             +
Sbjct: 4   PVFLKEPTN-RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD------VPGLRQIS 56

Query: 312 EEGTEIKKSELLIYNSNIDDN------GTFVCVAENQAGSTSSN-------YTIRIVLKE 358
            +G       L+      +D         + C+A NQ GS  S                 
Sbjct: 57  SDGK------LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110

Query: 359 ENVEVV 364
               V+
Sbjct: 111 NKEHVI 116

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 15/120 (12%), Positives = 30/120 (25%), Gaps = 14/120 (11%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPIQNESMSASESHAVYST 311
                      +  G +  + C + +        ++W  D              + V   
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV--L 161

Query: 312 EEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAGST--SSNYTIRIVLKEENVEVVTVFP 368
             G       L I      D   ++ C  +++       S    R+V+ E         P
Sbjct: 162 PSGE------LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP 215

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.2 bits (158), Expect = 4e-11
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 32/169 (18%)

Query: 39  SLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
              + ++ +DP  +         K L      KM   +++ ++L+   ++V+       L
Sbjct: 406 QYFSTLKAVDP-MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQL 462

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCG 158
             +  LD SHN L+ +P         L  L  S N ++ +                   G
Sbjct: 463 LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD------------------G 503

Query: 159 IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNP 205
           +          L  L+ L L NN++   +    L     L  ++L  N 
Sbjct: 504 VA--------NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 23  ICKWKGGKQTVECVNKSLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKI 80
           + K +     V  +    +TV+  ++       LD + N L+ L         L  L+ +
Sbjct: 435 VLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAA---LRCLEVL 491

Query: 81  YLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS-DTFPDYPSLMKLTLSGNPIKQI 138
             S   +  +D      L  L +L   +N LQ   +       P L+ L L GN + Q 
Sbjct: 492 QASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 19/168 (11%)

Query: 47  MDPNTQVLDYTGNNLKTL--HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDL 104
                Q    +   L+ L   N+      ++ ++ +         +        + L  +
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-----FSTLKAV 414

Query: 105 DFSH--------NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK 156
           D           +      S    +Y  +  L L+   +  +     + L  +  L+LS 
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSH 472

Query: 157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
             +  +  A    L  LE L+  +N +  + G   LP  L  + L +N
Sbjct: 473 NRLRALPPA-LAALRCLEVLQASDNALENVDGVANLPR-LQELLLCNN 518

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 63.4 bits (154), Expect = 4e-11
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           PQI      L    G+   ++C  +         L  G       +++      Y     
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV-- 244

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                  L +   +  D G + CVA N  G+ ++    ++V
Sbjct: 245 -----RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 59.6 bits (144), Expect = 8e-10
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 19/100 (19%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P I PS   L ++ G+ V+L C  +      + W     P       +  S         
Sbjct: 5   PVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGST-------- 52

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  L   N+   + GT+ C       + S+   + +
Sbjct: 53  -------LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 264 LEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
           + + EG+   L C ++    +  ++ + +G            S                 
Sbjct: 99  VTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP------------WRGF 146

Query: 323 LIYNSNIDDNGTFVCVAENQA-GSTSSNYTIRIVLKEENVEVVTVFPLEYVLIV 375
           +I  + + D+ T+VC        STS+   +++         + + P + V I 
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIR 200

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
            ++  G  V +  +VS    A++ W+ +GV +       S        ++G    +  L+
Sbjct: 18  QQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTR---EDSFKARYRFKKDGK---RHILI 70

Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
             +   +D G +  +       
Sbjct: 71  FSDVVQEDRGRYQVITNGGQCE 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 11/85 (12%)

Query: 264 LEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
           +E+ EG++ S  C +S         W   G  +         S    +T +G   +K  L
Sbjct: 18  MEVLEGESCSFECVLSHESASDPAMWTVGGKTVG-------SSSRFQATRQG---RKYIL 67

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTS 347
           ++  +   D G  V          S
Sbjct: 68  VVREAAPSDAGEVVFSVRGLTSKAS 92

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           L     + V L C++S   +   TW  DG  ++       ES  +    +G   +K  L+
Sbjct: 20  LTFTTSERVVLTCELSR-VDFPATWYKDGQKVE-------ESELLVVKMDG---RKHRLI 68

Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
           +  + + D+G F C  E  +  
Sbjct: 69  LPEAKVQDSGEFECRTEGVSAF 90

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
            ++ +G  V  + +++  P+ ++ W  +G  I+        S       +G    +  L 
Sbjct: 18  YQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIR-------PSTKYIFEHKGC---QRILF 66

Query: 324 IYNSNIDDNGTFVCVAENQAGSTS 347
           I N  + D+  +   A ++  ST 
Sbjct: 67  INNCQMTDDSEYYVTAGDEKCSTE 90

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+I      L + +G+  +L CK    P   I W   G  ++ +         +     G
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL--PSG 67

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
           +      ++    +  D G +VCVA N  G   S+
Sbjct: 68  SLF-FLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 14/137 (10%)

Query: 216 RRWLESTKTPMAIDPICSV----PPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKN 271
            ++    +    +  I +       R    +I+    D    +P+     +  E+ EG++
Sbjct: 440 TKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQS 499

Query: 272 VSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDD 331
            +  C+V A     +TW  D   ++           +             L I     DD
Sbjct: 500 ANFYCRVIASSPPVVTWHKDDRELKQ------SVKYMKRYNGN----DYGLTINRVKGDD 549

Query: 332 NGTFVCVAENQAGSTSS 348
            G +   A+N  G+   
Sbjct: 550 KGEYTVRAKNSYGTKEE 566

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 240 SVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNES 299
           S++I+      +   P +T     L    G+   ++C  S++      +L       N  
Sbjct: 172 SISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN----NTK 227

Query: 300 MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           ++  +    ++       K   L +   +    G + CVA N  G  S++   R+V
Sbjct: 228 LAIPQQSDFHNNRYQ---KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 19/100 (19%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P I PS   L ++ G  V+L C         + W     P        S S         
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVG----NGSVEWDGPPSPHWTLYSDGSSSI-------- 52

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  L   N+   + GT+ C         S+   + +
Sbjct: 53  -------LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 16/115 (13%)

Query: 264 LEIQEGKNVSLLCKVSA-IPEAKITWL-FDGVPIQNESMSASESHAVYSTEEGTEIKKSE 321
           + + E ++  L C ++  + EA ++ +   G P+         ++  +S   G       
Sbjct: 99  VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLM------RHTNYSFSPWHG------- 145

Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSSN-YTIRIVLKEENVEVVTVFPLEYVLIV 375
             I+ +    +  + C A        S    +++         +T+ P E V I 
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIR 200

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 11/84 (13%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           +E+  G       +       K+ W   G  I         S+      EG    +  L 
Sbjct: 18  VEVAAGSPAVFEAETER-AGVKVRWQRGGSDIS-------ASNKYGLATEG---TRHTLT 66

Query: 324 IYNSNIDDNGTFVCVAENQAGSTS 347
           +      D G++  +A +      
Sbjct: 67  VREVGPADQGSYAVIAGSSKVKFD 90

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
            E  EG   +L C++S    A + W      ++       +       ++G    + EL 
Sbjct: 18  KEASEGATATLQCELS--KVAPVEWKKGPETLR-------DGGRYSLKQDG---TRCELQ 65

Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
           I++ ++ D G + C+   +  S
Sbjct: 66  IHDLSVADAGEYSCMCGQERTS 87

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 11/82 (13%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           L+++E       CK    P A +TW    + ++      S  H    ++EG       L 
Sbjct: 18  LQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRA-----SGKHQP--SQEG---LTLRLT 66

Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
           I      D+ T+ C        
Sbjct: 67  ISALEKADSDTYTCDIGQAQSR 88

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 56.3 bits (136), Expect = 6e-10
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 246 LSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASES 305
            S  +++          Y+     + V L C++   P A++ W  DG  +        ES
Sbjct: 5   SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDGEEVV-------ES 56

Query: 306 HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
            A+   +E        L++    ++D+G ++C  ++++ S +
Sbjct: 57  PALLLQKED---TVRRLVLPAVQLEDSGEYLCEIDDESASFT 95

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.4 bits (139), Expect = 7e-10
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 90  IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYL 149
           + ++    +  LV LD   +    +   T  ++ +L  L+L    +  +       L  L
Sbjct: 18  LRNRTPAAVRELV-LDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISVSN--LPKLPKL 73

Query: 150 VTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNP 205
             LELS+  I    D     L +L  L L  NK+  IS    L     L  +DL +  
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 37  NKSLITVVEGMD---PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK 93
            KS    +EG+     N + L      L ++ N    K  L  L+K+ LS  RI      
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPK--LPKLKKLELSENRIFGGLDM 89

Query: 94  AFRGLTNLVDLDFSHNVLQTVPS-DTFPDYPSLMKLTLSGNPIKQIK 139
               L NL  L+ S N L+ + + +       L  L L    +  + 
Sbjct: 90  LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 59.5 bits (144), Expect = 7e-10
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 19/103 (18%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
              +          EG+ ++L C          + +  +G   +    +           
Sbjct: 82  RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN----------- 130

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                  S L I  +NI  NGT+ C    +   TS+  ++ + 
Sbjct: 131 -------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 24/109 (22%)

Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF-----DGVPIQNES 299
            +++ EL   P +  S     + EG  V+L C+   + +     L+         ++  +
Sbjct: 162 SVTVKELFPAPVLNASVT-SPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN 220

Query: 300 MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
            S                  SE  I  +  +D+G + C A  + G+   
Sbjct: 221 TS------------------SEYQILTARREDSGLYWCEAATEDGNVLK 251

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 21/99 (21%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
             IT    ++ + + + V+L C+V  +P  +   W  +G   Q  +              
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST-------------- 47

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI 352
                     I +++++D+G + C       S      I
Sbjct: 48  ------PSYRITSASVNDSGEYRCQRGLSGRSDPIQLEI 80

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 60.3 bits (145), Expect = 8e-10
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 240 SVTIKQLSIDELACEPQITP--STFYLEIQEGKNVSLLCKV----SAIPEAKITWLFDGV 293
           ++T+K +   + A  P I         E + G+ + + C V          ++ W  DG 
Sbjct: 210 TLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGK 269

Query: 294 PIQNESMSASESHAVYSTEEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAGSTSSNYTI 352
              + ++  + + ++  +    E +   L I   ++ D   ++VC A +  G  +    +
Sbjct: 270 KPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329

Query: 353 RI 354
           + 
Sbjct: 330 KQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 18/141 (12%)

Query: 253 CEPQITPSTFYLEIQEGKNVSLLC-----------KVSAIPEAKITWLFDGVPIQN-ESM 300
           C+     +   +++ E +   + C             +      + W +        E +
Sbjct: 6   CDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPI 65

Query: 301 SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEEN 360
           +        S E+        L    + ++D G + C+  N    +   + + +V K+  
Sbjct: 66  NFRLPENRISKEKDV------LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSC 119

Query: 361 VEVVTVFPLEYVLIVSGIISV 381
                  P+  + I  GI  +
Sbjct: 120 FNSPMKLPVHKLYIEYGIQRI 140

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 19/127 (14%)

Query: 248 IDELACEPQITPSTFYLEIQEGKNVSLLC-----KVSAIPEAKITWLFDGVPIQNESMSA 302
           + + +C         +    E     + C        +  +  ITW      IQN +   
Sbjct: 114 VQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI 173

Query: 303 SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVE 362
            E                 L    + I +NG + CV        + + T  + +K     
Sbjct: 174 PEG--------------MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSP 219

Query: 363 VVTVFPL 369
              V P+
Sbjct: 220 KNAVPPV 226

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.2 bits (141), Expect = 9e-10
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 7/130 (5%)

Query: 77  LQKIYLSRCRISVIDSKAFRGLTNL--VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP 134
           + K    +  I + + +     T    V+L      ++ + + T     +   L LS N 
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNN 59

Query: 135 IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT 194
           I++I   +   +  L  L L +  I+ IE+   V  D+LE L +  N+I ++SG   L  
Sbjct: 60  IEKIS--SLSGMENLRILSLGRNLIKKIENLDAV-ADTLEELWISYNQIASLSGIEKLVN 116

Query: 195 GLHGIDLHHN 204
            L  + + +N
Sbjct: 117 -LRVLYMSNN 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 40  LITVVEGMD--PNTQVLDYTGNNLKTLHN-EKFQKMGLVNLQKIYLSRCRISVIDSKAFR 96
            I  +  +    N ++L    N +K + N +         L+++++S  +I+ +      
Sbjct: 59  NIEKISSLSGMENLRILSLGRNLIKKIENLDAVAD----TLEELWISYNQIASL--SGIE 112

Query: 97  GLTNLVDLDFSHNVLQTVPS-DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSY 148
            L NL  L  S+N +      D       L  L L+GNP+            Y
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 33/155 (21%)

Query: 53  VLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ 112
           ++  T   ++            V  +++ L   +I VI++     L     +DFS N ++
Sbjct: 1   MVKLTAELIEQAAQYT----NAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR 55

Query: 113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDS 172
            +  D FP    L  L ++ N I +I  G  Q                         L  
Sbjct: 56  KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ------------------------ALPD 89

Query: 173 LEWLKLDNNKITTISGSNILP--TGLHGIDLHHNP 205
           L  L L NN +  +   + L     L  + +  NP
Sbjct: 90  LTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 11/150 (7%)

Query: 40  LITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRG 97
           LI            + LD  G  +  + N       L     I  S   I  +D   F  
Sbjct: 8   LIEQAAQYTNAVRDRELDLRGYKIPVIENLGAT---LDQFDAIDFSDNEIRKLDG--FPL 62

Query: 98  LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT-GAFQPLSYLVTLELSK 156
           L  L  L  ++N +  +        P L +L L+ N + ++        L  L  L + +
Sbjct: 63  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

Query: 157 CGIEVIED-AAFVGLDSLEWLK-LDNNKIT 184
             +   +    +V +  +  ++ LD  K+ 
Sbjct: 123 NPVTNKKHYRLYV-IYKVPQVRVLDFQKVK 151

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 59.3 bits (143), Expect = 2e-09
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 17/120 (14%)

Query: 268 EGKNVSLLCK-------VSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
           EG+ V+L C         S  P   +TW  +            E       ++G      
Sbjct: 32  EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPG----EEETRMWAQDGA----- 82

Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGIIS 380
            L +  +  +D+GT+VC   N +     +  +R+    +       +P    L  SG++ 
Sbjct: 83  -LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLV 141

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 16/109 (14%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLC-----KVSAIPEAKITWLFDGVPIQNESMSASESHAV 308
           +  +   ++   +    +  L+C           + KI W  D + +          +  
Sbjct: 120 DAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK-------DNEK 172

Query: 309 YSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
           + +  GT    + LL+++  ++D G + CV          N T  I L+
Sbjct: 173 FLSVRGT----THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELR 217

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSA---IPEAKITW-LFDGVPIQNESMSA--SESHAV 308
           P I      +    G  +++ CKV      P   + W   +   I++       +E    
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286

Query: 309 YSTEEGTEIKKSELLIYNSNIDDNGT-FVCVAENQAGSTSSNYTIRIVLKEE 359
             +E      +  L+      +D    F CV  N         T+R  +KE 
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ----TLRTTVKEH 334

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           LE+ EG   +L C +S++  A + W +    ++               +EG      EL+
Sbjct: 18  LEVLEGGAATLRCVLSSVA-APVKWCYGNNVLR-------PGDKYSLRQEG---AMLELV 66

Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
           + N    D+G + C   +Q  S
Sbjct: 67  VRNLRPQDSGRYSCSFGDQTTS 88

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 19/103 (18%)

Query: 255 PQIT-PSTFYLEIQEGKNVSLLCKVSA-IPEAKITWL-FDGVPIQNESMSASESHAVYST 311
             +T        ++ G +V+ +C   +  P   + W       + + +M           
Sbjct: 10  IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM----------D 59

Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
             G       L I N    D GT+VC   N         T+ +
Sbjct: 60  FNGI------LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 37  NKSLITVVEGMD---PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK 93
           ++S    +EG+       + L      L ++ N    K  L  L+K+ LS  R+S     
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPK--LNKLKKLELSDNRVSGGLEV 82

Query: 94  AFRGLTNLVDLDFSHNVLQTVPS-DTFPDYPSLMKLTLSGNPIKQIK 139
                 NL  L+ S N ++ + + +      +L  L L    +  + 
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 90  IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYL 149
           + ++    +  LV LD S +    +   T  ++  L  L+     +  I       L+ L
Sbjct: 11  LRNRTPSDVKELV-LDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKL 66

Query: 150 VTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILP--TGLHGIDLHHNP 205
             LELS   +    +       +L  L L  NKI  +S    L     L  +DL +  
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 56.1 bits (134), Expect = 5e-09
 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 14/121 (11%)

Query: 232 CSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFD 291
            +     +     +    +   E      T Y     G  V L C     P ++I W  +
Sbjct: 91  DAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHN 148

Query: 292 GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAGSTSSNY 350
              I  +    +               +  L +   S ++ +G +VC         ++ Y
Sbjct: 149 DKNIGGDEDDKNIGS-----------DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFY 197

Query: 351 T 351
            
Sbjct: 198 L 198

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 47.6 bits (112), Expect = 4e-06
 Identities = 16/102 (15%), Positives = 25/102 (24%), Gaps = 20/102 (19%)

Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
           + QE  +V L C         ITW  DG  I                       K +  +
Sbjct: 14  DYQEDGSVLLTCDA---EAKNITWFKDGKMIGF-----------------LTEDKKKWNL 53

Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV 366
            ++  D  G + C            Y       +   +    
Sbjct: 54  GSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKK 95

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 12/82 (14%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
            E  EG    L C++S    A + W      +++      + H++   ++G    + EL 
Sbjct: 29  EEATEGATAVLRCELS--KMAPVEWWKGHETLRD-----GDRHSL--RQDG---ARCELQ 76

Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
           I     +D G ++C+   +  S
Sbjct: 77  IRGLVAEDAGEYLCMCGKERTS 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 7e-09
 Identities = 88/604 (14%), Positives = 175/604 (28%), Gaps = 167/604 (27%)

Query: 37  NKSLITV-----VEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID 91
            K +++V     V+  D    V D   + L     +            + L       + 
Sbjct: 18  YKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FWTLL 72

Query: 92  SKAFRGLTNLV------DLDFSHNVLQTVPSDT--------------FPDYPSLMKLTLS 131
           SK    +   V      +  F  + ++T                   + D     K  +S
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 132 -GNPIKQIKTGAFQ--PLSYLVTLELSKCG-----IEVIEDAAF------------VG-- 169
              P  +++    +  P   ++   +   G     ++V                  +   
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 170 ------LDSLE--WLKLDNNKITTISGSNILPTGLHGI-----DLHHNPWTCDCLLIGLR 216
                 L+ L+    ++D N  +    S+ +   +H I      L  +    +CLL+ L 
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LL 251

Query: 217 R-WLESTKTPMAIDPIC---------SVPPRLSSVTIKQLSIDELAC--EPQITPSTF-- 262
                + K   A +  C          V   LS+ T   +S+D  +    P    S    
Sbjct: 252 NVQ--NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 263 YLEIQ------EGKNVSLLCKVSAIPEAKI-------TWLFDGVPIQNESMSAS------ 303
           YL+ +      E    +   ++S I E+          W           + +S      
Sbjct: 310 YLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 304 -ESHAVYST----EEGTEIKKSELLIY--NSNIDDNGTFV-------CVAENQAGSTSSN 349
            E   ++           I    L +   +    D    V        V +    ST S 
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 350 YTIRIVLKEENVEVVTV-------------FPLEYVL-------IVSGI---ISVCSLVL 386
            +I + LK +      +             F  + ++         S I   +       
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 387 IF-LLVLCFLCFRRKKKKLKKKDESDKNVNGSNENVVKNLRESPKYTSVNATSATCMDKV 445
              L  + FL FR  ++K++  D +  N +GS  N ++ L+    Y              
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRH-DSTAWNASGSILNTLQQLK---FY-------------- 530

Query: 446 NGGYII-ADGHNDMMLYATDSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESV--DKD 502
              YI   D   + ++ A    +     N+       +  +I     L+ + E++  +  
Sbjct: 531 -KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LRIA----LMAEDEAIFEEAH 584

Query: 503 RRAQ 506
           ++ Q
Sbjct: 585 KQVQ 588

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
             ++  +   +  +   +++ C V+A P   + WL             + +  V   ++G
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE---PAPTAANGGVMKEKDG 161

Query: 315 T-EIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY 350
           +  +     +  +     +    CV +N        Y
Sbjct: 162 SLSVA----VDLSLPKPWHLPVTCVGKNDKEEAHGVY 194

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 269 GKNVSLLC---KVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEI-------K 318
           G+ V+L     +VS  PE +++W   G   +   +       ++                
Sbjct: 6   GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65

Query: 319 KSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
              L++  +NI  +G ++C  +      +    + +V
Sbjct: 66  TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV 102

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 13/102 (12%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P  T        + G +  L C+        +  W          +              
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT------------PW 169

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
             E+    + + N++ + +GT+ C  +N+ GS      + +V
Sbjct: 170 LAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 18/117 (15%)

Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPE----AKITWLFDGVPIQNESMSASESHAVYST 311
            IT     +E  +G+   L CK +  PE      I WL      Q               
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 312 EEGTEIKKSE--------------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           +      K                + + N  + D GT+ C  +   G  +  + + +
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV 118

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 11/101 (10%), Positives = 24/101 (23%), Gaps = 9/101 (8%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
                     + Q+ K +   C  +   P + ++W                         
Sbjct: 136 EGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ--------EIRNPN 187

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           GT    S   +  S      +  C+          + T+ +
Sbjct: 188 GTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV 228

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 18/91 (19%)

Query: 266 IQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
             +  +V L CK  A P A +  W      +                 +G E +   L  
Sbjct: 244 YLQRMDVKLTCKADANPPATEYHWTTLNGSL----------------PKGVEAQNRTLFF 287

Query: 325 YNS-NIDDNGTFVCVAENQAGSTSSNYTIRI 354
               N    GT++C A N  G+ S    + I
Sbjct: 288 KGPINYSLAGTYICEATNPIGTRSGQVEVNI 318

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 17/144 (11%), Positives = 37/144 (25%), Gaps = 15/144 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVS----AIPEAKITWLFDGVPIQNESMSASESHAVYS 310
            Q+      +    G +V L C  +    ++   ++TW       +      + S  V  
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74

Query: 311 TEE--------GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVE 362
                              + +    ++D G ++C           +    + L      
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQ---LNLTVMAKP 131

Query: 363 VVTVFPLEYVLIVSGIISVCSLVL 386
              +   + VL          LV 
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVA 155

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 8/91 (8%), Positives = 22/91 (24%), Gaps = 20/91 (21%)

Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
            + +G++++L  +        +                                   L +
Sbjct: 108 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG--------------------KTLSV 147

Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
               + D+GT+ C              I ++
Sbjct: 148 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 53.1 bits (127), Expect = 4e-08
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 267 QEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE----- 321
           ++G  V L C  S     +  W          +  +  +       +  + ++S      
Sbjct: 8   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67

Query: 322 --LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEV 363
             L+I N  I+D+ T++C  E+Q               + ++  
Sbjct: 68  FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQ 111

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 53.2 bits (127), Expect = 4e-08
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 12/122 (9%)

Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNESMS 301
           Q+ I     +P+I  S     ++ GK +++ C V+        +I  L     ++++   
Sbjct: 85  QVEIYSFPKDPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL 141

Query: 302 ASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENV 361
                    T+        E+       D     VC A+       S  T+R  +KE  V
Sbjct: 142 EDADRKSLETKS------LEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQV 195

Query: 362 EV 363
            +
Sbjct: 196 YI 197

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 13/105 (12%)

Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
            Q G +VSL C  +       +W        N  ++              E   S L + 
Sbjct: 13  AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVT-------------NEGTTSTLTMN 59

Query: 326 NSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLE 370
             +  +  +++C A  ++        + I    ++ E+    PLE
Sbjct: 60  PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLE 104

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 19/86 (22%)

Query: 265 EIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           E QEG+ + L C      P  K+T+  +G   +   +                       
Sbjct: 96  EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD------------------PTFS 137

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSN 349
           I  +N   +G + C         SS 
Sbjct: 138 IPQANHSHSGDYHCTGNIGYTLFSSK 163

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 21/94 (22%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEE 313
             +     ++ + +  +V+L C+ +  PE+  I W  +G  I   +              
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT-------------- 50

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
                      + +N +D+G + C     + S  
Sbjct: 51  ------QPSYRFKANNNDSGEYTCQTGQTSLSDP 78

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 7/105 (6%)

Query: 250 ELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY 309
           ++            +         L C+    P+A++ W        ++ +S   +    
Sbjct: 112 KVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSD----HQVLSGKTTTTNS 167

Query: 310 STEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
             EE      S L I   N   N  F C         +    + I
Sbjct: 168 KREEKLFNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVI 209

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 52.4 bits (125), Expect = 8e-08
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
            G +VSL C        ++  +   +       S     A    E+    K     I + 
Sbjct: 16  VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL-FHIPSV 74

Query: 328 NIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEV 363
            + D+G + C+    A       T+++      ++ 
Sbjct: 75  QVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDT 110

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
              +   T  LE+     V L C+    P A+++W        N S+ A+ SH    T E
Sbjct: 103 ASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQ-------NVSVPANTSHIR--TPE 153

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           G     S L +       +  F C+  N      ++  I  
Sbjct: 154 GLYQVTSVLRLKPQ---PSRNFSCMFWNAHMKELTSAIIDP 191

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 53.0 bits (126), Expect = 9e-08
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 13/113 (11%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
                +   +++ EG ++++ C  +    A +TW       +N     +        + G
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG-TYQPLANKNQFG 195

Query: 315 TEIKKSE------------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                SE            L+I  + I D G   C      G   ++ +  I+
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL 248

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAK---ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
           + ++ GK+  ++ KV+         I W F G  ++  S S +      S    + +   
Sbjct: 22  VSVETGKDAVVVAKVNGKELPDKPTIKW-FKGKWLELGSKSGARFSFKESHNSASNVYTV 80

Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           EL I    + D G +    + +    S  + I +
Sbjct: 81  ELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 25/102 (24%)

Query: 255 PQITPSTF--YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
           P++            E    + +C+    P  ++  L DG                    
Sbjct: 184 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL---------------- 227

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                            D  GT++C A +  G  +   T+ +
Sbjct: 228 -------PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 22/102 (21%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P         E+ EG  V++ C+       +     +GVP Q                  
Sbjct: 99  PAPNVILTKPEVSEGTEVTVKCEAH----PRAKVTLNGVPAQ------------------ 136

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
               +++LL+  +  D+  +F C A  +      +      L
Sbjct: 137 PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL 178

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 40.8 bits (95), Expect = 9e-04
 Identities = 10/103 (9%), Positives = 26/103 (25%), Gaps = 17/103 (16%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPIQNESMSASESHAVYST 311
           PQ+        ++     +++C +  +    EA++        +               T
Sbjct: 7   PQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-----------T 52

Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                      +   +  +      C       S  +  T+ I
Sbjct: 53  YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 95

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 9/136 (6%)

Query: 74  LVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQ-TVPSDTFPDYPSLMKLTLS 131
              LQ + +S  ++S    S+A    T L  L+ S N     +P        SL  L+L+
Sbjct: 222 CSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLA 277

Query: 132 GNPIK-QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT-TISGS 189
            N    +I          L  L+LS           F     LE L L +N  +  +   
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 190 NILP-TGLHGIDLHHN 204
            +L   GL  +DL  N
Sbjct: 338 TLLKMRGLKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 30/180 (16%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNV 110
             LD + N+L               L+ + +S   +           L +L  LD S N 
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 111 LQ-TVPSD--TFPDYPSLMKLTLSGN------PIKQIK------------TG---AFQPL 146
           +                L  L +SGN       + +              +         
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDC 222

Query: 147 SYLVTLELSKCGIE-VIEDAAFVGLDSLEWLKLDNNKIT-TISGSNILPTGLHGIDLHHN 204
           S L  L++S   +       A      L+ L + +N+    I    +    L  + L  N
Sbjct: 223 SALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 38/172 (22%), Positives = 60/172 (34%), Gaps = 27/172 (15%)

Query: 47  MDPNTQVLDYTGNNLK-TLHNEKFQKMGLVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDL 104
           +  +   LD + NN    +      +     LQ++YL     +  I        + LV L
Sbjct: 366 LSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELVSL 423

Query: 105 DFSHNVLQ-TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP----LSYLVTLELSKCGI 159
             S N L  T+PS        L  L L  N +     G        +  L TL L    +
Sbjct: 424 HLSFNYLSGTIPSS-LGSLSKLRDLKLWLNML----EGEIPQELMYVKTLETLILDFNDL 478

Query: 160 E-VIEDAAFVGLDSLEWLKLDNNKITTISGSNILP------TGLHGIDLHHN 204
              I  +      +L W+ L NN+   ++G   +P        L  + L +N
Sbjct: 479 TGEI-PSGLSNCTNLNWISLSNNR---LTGE--IPKWIGRLENLAILKLSNN 524

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 3e-06
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 57/197 (28%)

Query: 20  TSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQK 79
            +  C + G    V C +  +             +D +   L    +             
Sbjct: 37  KNP-CTFDG----VTCRDDKVT-----------SIDLSSKPLNVGFSA------------ 68

Query: 80  IYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ-TVPSDTFPDYPSLMKLTLSGNPIKQI 138
                       S +   LT L  L  S++ +  +V    F    SL  L LS N +   
Sbjct: 69  -----------VSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSL--- 112

Query: 139 KTGAFQP------LSYLVTLELSKCGIE-VIEDAAFVGLDSLEWLKLDNNKIT-TISGSN 190
            +G           S L  L +S   ++   + +  + L+SLE L L  N I+       
Sbjct: 113 -SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 191 ILPTGLHG---IDLHHN 204
           +L  G      + +  N
Sbjct: 172 VLSDGCGELKHLAISGN 188

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 31/137 (22%)

Query: 74  LVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG 132
              L+ + LS    S  +       +  L  LD S N      S   P   SL  L+ S 
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF----SGELP--ESLTNLSAS- 369

Query: 133 NPIKQIKTGAFQPLSYLVTLELSKCGI--EVIEDAAFVGLDSLEWLKLDNNKIT-TISGS 189
                           L+TL+LS       ++ +      ++L+ L L NN  T  I  +
Sbjct: 370 ----------------LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

Query: 190 --NILPTGLHGIDLHHN 204
             N   + L  + L  N
Sbjct: 414 LSNC--SELVSLHLSFN 428

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 21/86 (24%)

Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
           E  N +L C+V    + ++        +++                       +  +   
Sbjct: 109 ECSNATLTCEVLEGTDVELKLYQGKEHLRSL---------------------RQKTMSYQ 147

Query: 328 NIDDNGTFVCVAENQAGSTSSNYTIR 353
             +    F C A N+    S    + 
Sbjct: 148 WTNLRAPFKCKAVNRVSQESEMEVVN 173

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 11/97 (11%)

Query: 268 EGKNVSLLCKVSAIPEAK--ITWLFDGVPI---QNESMSASESHAVYSTEEGTEIKKSEL 322
            G  ++L      + +    + W      +   + +     +S A      G       L
Sbjct: 10  LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD------L 63

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
            I N   DD+GT+     +  G+   N  + + + E 
Sbjct: 64  KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM 100

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 29/109 (26%)

Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE 304
            + + E+  +P I          E  N +L C+V    + ++        +++       
Sbjct: 99  TMEVYEMVSKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLR----- 145

Query: 305 SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
                           +  +     +    F C A N+    S    + 
Sbjct: 146 ----------------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 178

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 29/116 (25%)

Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
            + +G++++L  +        +                                   L +
Sbjct: 107 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG--------------------KTLSV 146

Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTI---------RIVLKEENVEVVTVFPLEY 371
               + D+GT+ C              I          IV K+E  +V   FPL +
Sbjct: 147 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAF 202

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 51.7 bits (123), Expect = 4e-07
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 267 QEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS------ 320
           ++G  V L C  S     +  W          +  +  +       +  + ++S      
Sbjct: 7   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66

Query: 321 -ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEV 363
             L+I N  I+D+ T++C  E+Q               + ++  
Sbjct: 67  FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQ 110

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 51.8 bits (123), Expect = 5e-07
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 25/102 (24%)

Query: 255 PQITPSTF--YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
           P++            E    + +C+    P  ++  L DG       +   ES  V    
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF----PLPIGESVTV---- 420

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                            D  GT++C A +  G  +   T+ +
Sbjct: 421 ---------------TRDLEGTYLCRARSTQGEVTREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 45.2 bits (106), Expect = 7e-05
 Identities = 11/103 (10%), Positives = 23/103 (22%), Gaps = 16/103 (15%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNESMSASESHAVYST 311
            ++  +        GKN++L C+V          +  L     ++ E      +      
Sbjct: 87  ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA------ 140

Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  +    +          F C  E              
Sbjct: 141 -------EVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 22/102 (21%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P         E+ EG  V++ C+     +  +  +                         
Sbjct: 284 PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR----------------- 326

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
                ++LL+  +  D+  +F C A  +      +      L
Sbjct: 327 -----AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL 363

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 19/110 (17%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           +  ++PS   + +  G +V + C  S      +                         +E
Sbjct: 1   QTSVSPSK--VILPRGGSVLVTCSTSCDQPMLLGI-----------------ETPLPKKE 41

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEV 363
                 +  +   SN+ ++   +C +    G +++   + +    E VE+
Sbjct: 42  LLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVEL 91

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 49.7 bits (118), Expect = 7e-07
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 15/119 (12%)

Query: 232 CSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFD 291
             +       T   +         Q         ++E  +V+L C  +    A I WLF+
Sbjct: 88  LDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND-IGANIQWLFN 146

Query: 292 GVPIQ-NESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
              +Q  E M+ S++              S L I     +D G + C   N      SN
Sbjct: 147 SQSLQLTERMTLSQN-------------NSILRIDPIKREDAGEYQCEISNPVSVRRSN 192

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 8/118 (6%)

Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGT 315
           ++T      ++ E  NV LL     +      W        ++ + A           G 
Sbjct: 1   EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEI-ARFVPNSNMNFTGQ 59

Query: 316 EIKKSE-------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV 366
                E       LL     + D G +     ++    +       V +      + V
Sbjct: 60  AYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQV 117

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 49.8 bits (118), Expect = 8e-07
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 8/115 (6%)

Query: 254 EPQITPSTFYLEI-QEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYST 311
             +++P+   L + ++       C      P  KITW  +G  ++       E +    T
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177

Query: 312 EE---GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEV 363
                G     S L +     D + +F C A     S       R+     ++ +
Sbjct: 178 VREASGLLSLTSTLYLRLRKDDRDASFHCAAHY---SLPEGRHGRLDSPTFHLTL 229

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 20/94 (21%)

Query: 266 IQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
            +E   + L C         K+T+L +G   +    +                  S+  I
Sbjct: 100 FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHN------------------SDFHI 141

Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
             + + D+G++ C     + + SS  T+ I + +
Sbjct: 142 PKATLKDSGSYFCRGLVGSKNVSSE-TVNITITQ 174

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 20/95 (21%)

Query: 265 EIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
            + EG+ + L C         K+ +  DG  ++    +                    + 
Sbjct: 96  VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN------------------HNIS 137

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
           I N+ ++D+GT+ C  +       S   + I + +
Sbjct: 138 ITNATVEDSGTYYCTGKVWQLDYESE-PLNITVIK 171

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 21/94 (22%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEE 313
           P+++ +  +  I +G+NV+L C  +   E     W  +G   +  +              
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN-------------- 50

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS 347
                 S L I N+  +D+G + C  +    S  
Sbjct: 51  ------SSLNIVNAKFEDSGEYKCQHQQVNESEP 78

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 24/115 (20%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIP----EAKITWLFDGVPIQNESMSASESHAVYS 310
             ++  +       G   +L   V+           TW  D  P +N +           
Sbjct: 3   FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT----------- 51

Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVT 365
                    + L + ++  ++ G++    ++    TS    + ++ + E +  +T
Sbjct: 52  ---------ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNIT 97

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 32/199 (16%), Positives = 60/199 (30%), Gaps = 49/199 (24%)

Query: 36  VNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID---- 91
           ++  +           Q LD     L      +     L   Q + L  C ++       
Sbjct: 1   MSLDI-----------QSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDI 48

Query: 92  SKAFRGLTNLVDLDFSHNVLQ-----------TVPSDTFPDYPSLMKLTLSGNPI----- 135
           S A R    L +L+   N L              PS        + KL+L    +     
Sbjct: 49  SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS------CKIQKLSLQNCCLTGAGC 102

Query: 136 KQIKTGAFQPLSYLVTLELSKC-----GIEVIEDAAFVGLDSLEWLKLDNNKITTISGSN 190
             + +   + L  L  L LS       G++++ +        LE L+L+   ++  S   
Sbjct: 103 GVL-SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 191 ILP-----TGLHGIDLHHN 204
           +            + + +N
Sbjct: 162 LASVLRAKPDFKELTVSNN 180

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 27/153 (17%), Positives = 44/153 (28%), Gaps = 23/153 (15%)

Query: 76  NLQKIYLSRCRISVID----SKAFRGLTNLVDLDFSHNVLQTVP----SDTFPDYP-SLM 126
            L+K+ L  C +S       +   R   +  +L  S+N +             D P  L 
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 127 KLTLSGNPIK----QIKTGAFQPLSYLVTLELSKC-----GIEVIEDAAFVGLDSLEWLK 177
            L L    +     +   G     + L  L L        G+  +          L  L 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 178 LDNNKITTISGSNI---LP--TGLHGIDLHHNP 205
           +    IT     ++   L     L  + L  N 
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 26/160 (16%)

Query: 76  NLQKIYLSRCRISVIDSKAF-RGL----TNLVDLDFSHNVLQTVP----SDTFPDYPSLM 126
           +L+++ L+   +    ++     L      L  L               S        L+
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344

Query: 127 KLTLSGNPI-----KQIKTGAFQPLSYLVTLELSKCGI--EVIED--AAFVGLDSLEWLK 177
           +L +S N +     +++  G  QP S L  L L+ C +         A  +   SL  L 
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404

Query: 178 LDNNKITTISGSNIL-------PTGLHGIDLHHNPWTCDC 210
           L NN +   +G   L          L  + L+   W+ + 
Sbjct: 405 LSNNCLGD-AGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 20/116 (17%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
             +         +E   + L C         K+T+L +G   +    +            
Sbjct: 89  GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHN------------ 136

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN-YTIRIVLKEENVEVVTVFP 368
                 S+  I  + + D+G++ C     + + SS    I I        + + FP
Sbjct: 137 ------SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTISSFFP 186

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           +++ +G++      +S     + TW  +G  +++                  +  +  L+
Sbjct: 18  VQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLI 75

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
           ++     D+G  V  +       S+  TI+
Sbjct: 76  LHAVKHQDSGALVGFSCPG-VQDSAALTIQ 104

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 17/129 (13%)

Query: 257 ITPSTFYLEIQEGKNVSLLCKVSAIPE---AKITWLFDGVPIQNESMSASESHAVYSTEE 313
           +      L ++ G    + C + +  E    K+ W+F       E    S    + S + 
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180

Query: 314 GTEIKKSE--------------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
            +  +                 + +      D G + C        +     + +V  E 
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEF 240

Query: 360 NVEVVTVFP 368
              +    P
Sbjct: 241 QRTISPTPP 249

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 13/125 (10%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNES----MSASESHA 307
           P +T S+  L +  G++V + C V         ++ WLF               ++ S  
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 308 VYSTEEGTEIKKSE------LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENV 361
               +  + +          LL+ +    D G + C    +  S      + + +  E  
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEP 125

Query: 362 EVVTV 366
             + V
Sbjct: 126 RDLRV 130

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 22/183 (12%), Positives = 49/183 (26%), Gaps = 38/183 (20%)

Query: 170 LDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAID 229
           L  + W K   +K+  +  S           ++ +  +    +  L    E         
Sbjct: 23  LKEVLWKK-QKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE----- 76

Query: 230 PICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWL 289
                P    ++    L + E+  +P I          E  N +L C+V    + ++   
Sbjct: 77  --MESPNITDTMKF-FLYVLEMVSKPMIY--------WECSNATLTCEVLEGTDVELKLY 125

Query: 290 FDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
                +++                       +  +     +    F C A N+    S  
Sbjct: 126 QGKEHLRSLR---------------------QKTMSYQWTNLRAPFKCKAVNRVSQESEM 164

Query: 350 YTI 352
             +
Sbjct: 165 EVV 167

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
               TPS    EI       ++C  S   PE  ++WL +G  +   + + S+       E
Sbjct: 106 ADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQ-----DPE 160

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  S+L     N+  N +F+C+ +      +  +    
Sbjct: 161 TELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQTFNWNT 199

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 46/168 (27%)

Query: 76  NLQKIYLSRCRISVIDSKAF-RGL----TNLVDLDFSHN------------VLQTVPSDT 118
           ++  + LS   +   +S    + L     N+  L+ S N             L  +P   
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF-- 109

Query: 119 FPDYPSLMKLTLSGNPI-----KQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGL--- 170
                ++  L L  N        + K       + + +L L       +   +   L   
Sbjct: 110 -----TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND---LGIKSSDELIQI 161

Query: 171 -----DSLEWLKLDNNKITTISGSNI------LPTGLHGIDLHHNPWT 207
                 ++  L L  N + + + + +      +P  +  +DL  N   
Sbjct: 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 27/169 (15%), Positives = 45/169 (26%), Gaps = 36/169 (21%)

Query: 72  MGLVNLQKIYLSRCRISVIDSKAF----RGLTNLVDLDFSHNVLQ----TVPSDTFPDYP 123
           M   +++   L    I+  D K+         ++ ++  S N +        S+      
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 124 SLMKLTLSGNPIKQIKT----------GAFQPLSYLVTLELSKCGIEVIEDAAFVGL--- 170
            L     S     ++K            A      L T+ LS            +     
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 171 -DSLEWLKLDNNKITTISGSNI--------------LPTGLHGIDLHHN 204
              LE L L NN +   +G+ I                  L  I    N
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 24/169 (14%), Positives = 43/169 (25%), Gaps = 43/169 (25%)

Query: 76  NLQKIYLSRCRISVIDSKAFRGL----------TNLVDLDFSHNVL--QTVP--SDTFPD 121
           +L+    S      +  +    L            L  +  S N           D    
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 122 YPSLMKLTLSGNPI-------------KQIKTGAFQPLSYLVTLELSKCGIEVIEDA--- 165
           +  L  L L  N +             +       +    L ++   +  +E   +    
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE---NGSMK 177

Query: 166 ----AFVGLDSLEWLKLDNNKITTISGSNILPTGLHG------IDLHHN 204
                F     L  +K+  N I      ++L  GL        +DL  N
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 59  NNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL----TNLVDLDFSHNVLQTV 114
             +  L +E  +    +  + I         +D+  F+ +     NLV LD S     T+
Sbjct: 185 GAMGKLEDEIMK--AGLQPRDINFL-TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI 241

Query: 115 PSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV-TLELSKCGIEVIEDAAFVGLDSL 173
           P  TF     L+K+ L  N +K I    F     L  TLEL    +  IE  AF+G D+L
Sbjct: 242 PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299

Query: 174 EWLKLDNNKITTISGS 189
            ++    +KITT+   
Sbjct: 300 RYVLATGDKITTLGDE 315

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 7/104 (6%)

Query: 87  ISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPL 146
            +  +  AF     L        +   +  +          +       K +    F+ +
Sbjct: 164 KNRWEHFAFIEGEPLETTIQVGAM-GKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLI 221

Query: 147 SY----LVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI 186
                 LV+L++SK     I D  F     L  +KL  + + TI
Sbjct: 222 RDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL-PHNLKTI 264

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 23/113 (20%)

Query: 245 QLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAI----PEAKITWLFDGVPIQNESM 300
            L +  L  +P I         + G+   L C +       P    +W  + +   +   
Sbjct: 117 NLEVTALIEKPDIHFLEPL---ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPET 173

Query: 301 SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
           + S                SEL +     D      C  + Q    ++  T++
Sbjct: 174 TRS----------------SELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ 210

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 29/253 (11%), Positives = 59/253 (23%), Gaps = 29/253 (11%)

Query: 103 DLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK-CGIEV 161
              +    +  + +     +  L   T  G   K ++ G  +       +E+        
Sbjct: 361 KYHYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAA 420

Query: 162 IEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLES 221
           I+            L  +  K+   S   +    L   +++       CL+    R    
Sbjct: 421 IQT---------MSLDAERRKLYVSSQWEVSQVPLDLCEVYGGG-CHGCLMS---RDPYC 467

Query: 222 TKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAI 281
                    I S    +           E             + +       L C +   
Sbjct: 468 GWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPME-S 526

Query: 282 PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA-E 340
             A  +W       Q            + +          L I N      G + C A E
Sbjct: 527 RHATYSWRHKENVEQ-------SCEPGHQSPNCI------LFIENLTAQQYGHYFCEAQE 573

Query: 341 NQAGSTSSNYTIR 353
                 + ++ + 
Sbjct: 574 GSYFREAQHWQLL 586

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 25/134 (18%)

Query: 59  NNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNV------LQ 112
           N+L T   +K+       +Q I  +   I  I      GL  +  +            L+
Sbjct: 51  NHLPTGPLDKY------KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE 104

Query: 113 TVPSDTFPDYPSLMKLTLSGNP------IKQIKTGAFQPLSYLVTLELSKC-GIEVIEDA 165
            + S       S++++ +          I  +          L  L LS   G++  E  
Sbjct: 105 RL-SQLENLQKSMLEMEIISCGNVTDKGIIALH-----HFRNLKYLFLSDLPGVKEKEKI 158

Query: 166 AFVGLDSLEWLKLD 179
                 SL  L+L 
Sbjct: 159 VQAFKTSLPSLELK 172

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 30/170 (17%)

Query: 49  PNTQVLDYTGNNL-----KTLHNEKFQKMGLVNLQKIYLSRCRIS-VIDSKAFRGLTNLV 102
                L  T  N+       L         +  L  +  S   +S  +   +   L NLV
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQ-------IKTLVTLDFSYNALSGTLPP-SISSLPNLV 152

Query: 103 DLDFSHNVLQ-TVPSDTFPDYPSLMK-LTLSGNPIKQIKTGAFQPLSY----LVTLELSK 156
            + F  N +   +P  ++  +  L   +T+S N +    TG   P ++    L  ++LS+
Sbjct: 153 GITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRL----TGKI-PPTFANLNLAFVDLSR 206

Query: 157 CGIE-VIEDAAFVGLDSLEWLKLDNNKIT-TISGSNILPTGLHGIDLHHN 204
             +E       F    + + + L  N +   +     L   L+G+DL +N
Sbjct: 207 NMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNN 254

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQNESMSASESHAVYSTE 312
             +T  T  + ++EG+ ++L C  S    + + WL         NE      S       
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
              ++    + + N  + D G + C+  + + ST  
Sbjct: 62  SANQLS---ITVPNVTLQDEGVYKCLHYSDSVSTKE 94

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 16/116 (13%)

Query: 256 QITPSTFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           Q+ P    + +  G +  L C+++ A   A + W      +                   
Sbjct: 9   QVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV---------------Q 53

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLE 370
           ++  +S L + N+++   GT VCV      +      + +      + V     + 
Sbjct: 54  SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVP 109

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 43.4 bits (101), Expect = 3e-04
 Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG-------VPIQNESMSASESHA 307
           P +   T    +  G+ V++ C        K   L+         V   +  ++ + +  
Sbjct: 113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGR 172

Query: 308 VYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTV 366
           +    +GT      ++I    + D G ++C A + + S   N  ++++  E  +    +
Sbjct: 173 IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 253 CEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
                      +E+  G+  +  C       A       G+ +++  +   +  +     
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 222

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                  +   + N+   D G + C+   + G   SNY   +V
Sbjct: 223 -------ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 43.2 bits (100), Expect = 3e-04
 Identities = 37/191 (19%), Positives = 61/191 (31%), Gaps = 18/191 (9%)

Query: 179 DNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRL 238
            N  +   S S ++   L     H     C       R    +   P A           
Sbjct: 462 GNRFVYAGSNSGVVQAPLAFCGKHGTCEDCV----LARDPYCAWSPPTATCVALHQTESP 517

Query: 239 SSVTIKQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNE 298
           S   I+++S D   C  +   S      + G    L C   +   A++ W F    ++ E
Sbjct: 518 SRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE 576

Query: 299 SMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA-ENQAGSTSSNYTIRIVLK 357
           S             +        LLI+N +  D+G + C++ E     T      + VL+
Sbjct: 577 S-----PKYGLMGRKN-------LLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLE 624

Query: 358 EENVEVVTVFP 368
            + V    V P
Sbjct: 625 VKVVPKPVVAP 635

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 22/101 (21%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
             Q+T  +   +      + L C V  A       W   G  + ++              
Sbjct: 110 NIQVTNHSQLFQ-NMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP------------- 155

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
                  +  + ++  I     + C+AEN   + S + + +
Sbjct: 156 -------NLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQ 189

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 40.4 bits (94), Expect = 9e-04
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 268 EGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS-----E 321
            G++V+L  +  A  +   ITWLF+   +       ++S  ++ T      + +      
Sbjct: 12  LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71

Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENVEVVTVFPLEYVLIVSGIISV 381
           L + N  ++D G++      +  +  S+YT+RI+ +  N+  VT     +  +   +   
Sbjct: 72  LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNI-QVTNHSQLFQNMTCELHLT 130

Query: 382 CSLV 385
           CS+ 
Sbjct: 131 CSVE 134

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
             IT + + + I  G  V L C     P ++I W  +   I  +    +           
Sbjct: 8   GGITQTPYKVSIS-GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGS-------- 56

Query: 315 TEIKKSELLIYN-SNIDDNGTFVCVAENQAGSTSSNYT 351
               +  L +   S ++ +G +VC         ++ Y 
Sbjct: 57  ---DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL 91

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 231 ICSVPPRLSSVTIKQLSIDELACEPQITPSTFYL-EIQEGKNVSLLCKVSAI--PEAKIT 287
           IC V          + + +                 ++    V++ C+V        ++T
Sbjct: 196 ICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLT 255

Query: 288 WLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA-GST 346
           WL +G   + E+ S          ++GT    S LL+  S   D+    C  E+    + 
Sbjct: 256 WLENGNVSRTETASTVT-----ENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAV 310

Query: 347 SSNYTIRI 354
           S ++ +++
Sbjct: 311 SKSHDLKV 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	767
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.96
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.91
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.89
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.77
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.73
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.73
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.72
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.71
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.71
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.7
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.7
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.69
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.69
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.67
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.67
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.63
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.6
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.6
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.59
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.59
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.59
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.58
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.53
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.53
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.51
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.43
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.41
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.38
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.38
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.38
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.36
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.33
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.3
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.26
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.25
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.05
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.94
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.87
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.63
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.54
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.53
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.5
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.46
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.38
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.38
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.37
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.36
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.33
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.32
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.32
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.31
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.31
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.3
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.3
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.27
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.26
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.24
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.23
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.22
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.22
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.22
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.18
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.16
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.12
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.1
1he7_A	126	High affinity nerve growth factor receptor; transf	98.09
2ens_A	96	Advanced glycosylation END product-specific recept	98.07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.07
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.02
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.01
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.99
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	97.99
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	97.95
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	97.91
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	97.9
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.87
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	97.87
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	97.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.87
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	97.86
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	97.86
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	97.84
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	97.83
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.81
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.8
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	97.8
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	97.77
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	97.76
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	97.75
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	97.73
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.7
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	97.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.69
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	97.68
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	97.67
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.67
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	97.66
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	97.66
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	97.64
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	97.61
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	97.6
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	97.6
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	97.59
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	97.55
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	97.55
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	97.55
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	97.54
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	97.52
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	97.52
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	97.52
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	97.51
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	97.51
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	97.5
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	97.49
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	97.48
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	97.47
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	97.47
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	97.47
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	97.47
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	97.46
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	97.46
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	97.45
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	97.45
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	97.43
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	97.43
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	97.42
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	97.42
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	97.42
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	97.42
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	97.42
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	97.4
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	97.39
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	97.39
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	97.38
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	97.37
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	97.37
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	97.36
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	97.36
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	97.35
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	97.35
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	97.34
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	97.33
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	97.33
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	97.33
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	97.32
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	97.31
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	97.31
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	97.31
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	97.3
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	97.3
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	97.29
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	97.29
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	97.29
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	97.29
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	97.28
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	97.28
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	97.28
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	97.28
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	97.27
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	97.26
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	97.26
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	97.25
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	97.25
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	97.25
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	97.23
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	97.22
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	97.21
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	97.2
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	97.2
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	97.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.19
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	97.18
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	97.17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	97.17
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	97.15
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	97.15
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	97.14
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	97.13
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	97.13
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	97.13
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	97.11
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	97.09
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	97.09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	97.07
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	97.06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	97.05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	97.04
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	97.03
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	97.03
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	97.01
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	97.0
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	96.99
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	96.99
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	96.98
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	96.97
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	96.96
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	96.95
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	96.94
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.94
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	96.93
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	96.92
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	96.91
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	96.91
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	96.9
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	96.89
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	96.89
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	96.89
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	96.89
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	96.89
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	96.89
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	96.88
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	96.87
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	96.87
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	96.86
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	96.86
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	96.85
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	96.83
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	96.83
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	96.83
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	96.82
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	96.82
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	96.81
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	96.8
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	96.8
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	96.79
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	96.78
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	96.78
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	96.78
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	96.77
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	96.75
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	96.74
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	96.73
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	96.7
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	96.69
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	96.68
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	96.67
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	96.66
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	96.66
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	96.65
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	96.61
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	96.61
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	96.61
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	96.6
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	96.59
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	96.59
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	96.57
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	96.55
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	96.54
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	96.54
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	96.54
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	96.53
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	96.53
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	96.53
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	96.53
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	96.53
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	96.53
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	96.52
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	96.52
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	96.52
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	96.52
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	96.52
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	96.49
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	96.48
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	96.48
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	96.48
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	96.47
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.47
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	96.46
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	96.44
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	96.44
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	96.44
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	96.42
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	96.42
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	96.4
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	96.4
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	96.4
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	96.39
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	96.37
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	96.37
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	96.37
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	96.36
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	96.35
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	96.35
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	96.34
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	96.33
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	96.33
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	96.33
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	96.33
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	96.33
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	96.32
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	96.3
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	96.29
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	96.28
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	96.27
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	96.26
1xt5_A	135	Variable region-containing chitin-binding protein	96.26
3khq_A	133	B-cell antigen receptor complex-associated protei	96.26
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	96.25
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	96.23
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	96.23
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	96.22
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	96.22
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	96.2
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	96.19
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	96.19
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	96.18
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	96.18
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	96.18
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	96.17
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	96.17
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	96.17
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	96.15
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	96.15
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	96.14
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	96.14
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	96.14
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	96.13
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	96.13
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	96.13
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	96.12
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	96.11
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	96.11
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	96.11
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	96.1
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	96.1
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	96.02
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	96.02
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	96.0
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	95.99
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	95.97
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	95.95
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	95.95
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	95.94
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	95.94
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	95.94
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	95.91
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	95.9
3sob_L	237	Antibody light chain; beta propeller, protein bind	95.89
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	95.88
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	95.88
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	95.88
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	95.88
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	95.87
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	95.87
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	95.86
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	95.86
3sob_L	237	Antibody light chain; beta propeller, protein bind	95.84
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	95.83
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	95.81
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	95.8
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	95.8
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	95.77
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	95.77
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	95.77
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	95.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.75
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	95.75
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	95.74
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	95.72
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	94.7
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	95.71
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	95.7
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	95.7
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	95.69
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	95.68
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	95.68
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	95.68
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	95.65
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	95.65
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	95.64
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	95.64
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	95.61
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	95.61
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	95.61
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	95.6
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	95.58
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	95.57
3umt_A	256	SCFV heavy chain and light chain; stability engine	95.52
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	95.5
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	95.49
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	95.49
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	95.47
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	95.46

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=3e-38  Score=356.33  Aligned_cols=329  Identities=29%  Similarity=0.530  Sum_probs=244.4

Q ss_pred             ccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccc
Q psy12044         15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKA   94 (767)
Q Consensus        15 ~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~   94 (767)
                      +..||..|.|...  ...|+|.+.++..+|.+++++++.|+|++|.|+.+.+..|..  +++|+.|+|++|.|+.+.+.+
T Consensus        32 ~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~i~~~~  107 (440)
T 3zyj_A           32 AQTCPSVCSCSNQ--FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKH--LRHLEILQLSRNHIRTIEIGA  107 (440)
T ss_dssp             -CCCCSSSEECTT--SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSS--CSSCCEEECCSSCCCEECGGG
T ss_pred             cccCCCCCEeCCC--CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhC--CCCCCEEECCCCcCCccChhh
Confidence            4689999999753  357999999999999999999999999999999988888874  788888888888888887777


Q ss_pred             ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCccccc----------------------------------
Q psy12044         95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT----------------------------------  140 (767)
Q Consensus        95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~----------------------------------  140 (767)
                      |.++++|++|+|++|+|+.+++..|..+++|+.|+|++|.|+.+++                                  
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  187 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL  187 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred             ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence            8888888888888887777776666666666666666665554433                                  


Q ss_pred             -------------------------------------CCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcc
Q psy12044        141 -------------------------------------GAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI  183 (767)
Q Consensus       141 -------------------------------------~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~L  183 (767)
                                                           ..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|
T Consensus       188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             CEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             CeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence                                                 2333334444444444444444455566677777888888888


Q ss_pred             ccccCCCC-CCCCcccccCCCCCCCchhhhhhhhhhhccCCCCC-ccCCCCCCCCCCCCCcccccccccccCC-CCCCCC
Q psy12044        184 TTISGSNI-LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPM-AIDPICSVPPRLSSVTIKQLSIDELACE-PQITPS  260 (767)
Q Consensus       184 t~ip~~~~-~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~-~~~~~C~~p~~l~g~~i~~l~~~~l~C~-P~i~~~  260 (767)
                      +.++...+ .+++|+.|+|++|+|.|||.+.|+..|++...... .....|..|..+.|..+..++...+.|. |.+...
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P~i~~~  347 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEP  347 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCCCCCEEEC
T ss_pred             CccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCCCCccccc
Confidence            87776654 46889999999999999999999999998764332 2457899999999999999999999997 555556


Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeec-cCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPI-QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l-~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      +....+.+|+.+++.|.+ +.|.|.+.|.++++.+ ......    ..+...      ..++|.|.+++.+|.|.|+|+|
T Consensus       348 ~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~----~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a  416 (440)
T 3zyj_A          348 PADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYK----VRIAVL------SDGTLNFTNVTVQDTGMYTCMV  416 (440)
T ss_dssp             CCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCC----SSEEEC------TTCCEEESSCCSTTCEEEEEEE
T ss_pred             ccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCC----ceEEEc------cCCeEEEccCChhhCEEEEEEE
Confidence            667889999999999999 5789999999854333 221110    011111      1246999999999999999999


Q ss_pred             ccCCCCcccceEEEEEeec
Q psy12044        340 ENQAGSTSSNYTIRIVLKE  358 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~~~~  358 (767)
                      .|..|.+.+.+.+.|....
T Consensus       417 ~N~~G~~~~~~~~~v~~~~  435 (440)
T 3zyj_A          417 SNSVGNTTASATLNVTGTH  435 (440)
T ss_dssp             ECSSCEEEEEEEEEEC---
T ss_pred             EcCCCcEEEEEEEEEeccc
Confidence            9999999888888776644

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=6e-38  Score=355.07  Aligned_cols=329  Identities=27%  Similarity=0.491  Sum_probs=248.3

Q ss_pred             ccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccc
Q psy12044         15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKA   94 (767)
Q Consensus        15 ~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~   94 (767)
                      ...||..|.|.+.  ...|+|.+.++..+|.+++++++.|+|++|.|+++.+..|.+  +++|+.|+|++|.|+++.+..
T Consensus        43 ~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~~~~~~  118 (452)
T 3zyi_A           43 PQNCPSVCSCSNQ--FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRH--LHHLEVLQLGRNSIRQIEVGA  118 (452)
T ss_dssp             -CCCCTTSEECSS--SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTT
T ss_pred             cCCCCCCCEECCC--CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCC--CCCCCEEECCCCccCCcChhh
Confidence            4689999999864  357999999999999999999999999999999998888874  888888888888888888888


Q ss_pred             ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccC---------------------------------
Q psy12044         95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG---------------------------------  141 (767)
Q Consensus        95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~---------------------------------  141 (767)
                      |.++++|++|+|++|.|+.+++..|..+++|+.|+|++|.|+.+++.                                 
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  198 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL  198 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred             ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence            88888888888888888877777777777777777776666554432                                 


Q ss_pred             --------------------------------------CcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcc
Q psy12044        142 --------------------------------------AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI  183 (767)
Q Consensus       142 --------------------------------------~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~L  183 (767)
                                                            .|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|
T Consensus       199 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             CEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence                                                  233333444444444444444455566667777777888888


Q ss_pred             ccccCCCC-CCCCcccccCCCCCCCchhhhhhhhhhhccCCCCC-ccCCCCCCCCCCCCCcccccccccccCC-CCCCCC
Q psy12044        184 TTISGSNI-LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPM-AIDPICSVPPRLSSVTIKQLSIDELACE-PQITPS  260 (767)
Q Consensus       184 t~ip~~~~-~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~-~~~~~C~~p~~l~g~~i~~l~~~~l~C~-P~i~~~  260 (767)
                      +.++...+ .+++|+.|+|++|+|.|+|.+.|+..|++...... .....|..|..+.|..+..++...+.|. |.+...
T Consensus       279 ~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P~i~~~  358 (452)
T 3zyi_A          279 SSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDA  358 (452)
T ss_dssp             SCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCCCCCSBC
T ss_pred             CccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccCcccccc
Confidence            87776654 46789999999999999999999999998653322 2456899999999999999999999997 556666


Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCe-eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV-PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~-~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      +....+.+|+.+++.|.+.  |.|.+.|.++++ .+......    ..+...      ..++|.|.+++.+|.|.|+|.|
T Consensus       359 ~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~----~~~~~~------~~g~L~i~~v~~~D~G~Y~C~a  426 (452)
T 3zyi_A          359 PRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRH----PRISVL------NDGTLNFSHVLLSDTGVYTCMV  426 (452)
T ss_dssp             CCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCC----SSCEEC------TTSCEECSSCCTTCCEEEEEEE
T ss_pred             cccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCC----CCEEEC------CCCeEEEeecCHHHCEEEEEEE
Confidence            6778899999999999998  999999998543 33221110    011111      1246999999999999999999


Q ss_pred             ccCCCCcccceEEEEEeecc
Q psy12044        340 ENQAGSTSSNYTIRIVLKEE  359 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~~~~~  359 (767)
                      .|..|...+.+.+.|...+.
T Consensus       427 ~N~~G~~~~~~~l~v~~~~~  446 (452)
T 3zyi_A          427 TNVAGNSNASAYLNVSTAGT  446 (452)
T ss_dssp             ECSSCEEEEEEEEEC-----
T ss_pred             EcCCCcEEEEEEEEEEcccc
Confidence            99999988888877765443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=100.00  E-value=6e-37  Score=337.03  Aligned_cols=319  Identities=26%  Similarity=0.411  Sum_probs=262.4

Q ss_pred             hccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcc
Q psy12044         14 IVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK   93 (767)
Q Consensus        14 ~~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~   93 (767)
                      ...+||..|.|.+    ..++|++.++..+|..++..++.|+|++|.|+++.+..|.. .+.+|+.|+|++|+|+.+.+.
T Consensus         8 ~~~~Cp~~C~C~~----~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~~   82 (361)
T 2xot_A            8 SVVSCPANCLCAS----NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSE   82 (361)
T ss_dssp             CCTTCCTTCEEET----TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEECTT
T ss_pred             cCCCCCCCCEECC----CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhh-cccccCEEECCCCcCCccChh
Confidence            4568999999985    47999999999999999999999999999999999988851 289999999999999999999


Q ss_pred             cccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhh---cCC
Q psy12044         94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAF---VGL  170 (767)
Q Consensus        94 ~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~---~~l  170 (767)
                      .|.++++|++|+|++|+|+.+++..|..+++|+.|+|++|.|+.+.+..|..+++|+.|+|++|.|+.++...|   ..+
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l  162 (361)
T 2xot_A           83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL  162 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----C
T ss_pred             hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998877   569


Q ss_pred             CCCCeeeccCCccccccCCCC-CCCC--cccccCCCCCCCchhhhhhh-hhhhccCCC---CCccCCCCCCCCCCCCCcc
Q psy12044        171 DSLEWLKLDNNKITTISGSNI-LPTG--LHGIDLHHNPWTCDCLLIGL-RRWLESTKT---PMAIDPICSVPPRLSSVTI  243 (767)
Q Consensus       171 ~~L~~L~Ls~N~Lt~ip~~~~-~~~~--L~~L~Ls~N~l~C~c~l~~l-~~~l~~~~~---~~~~~~~C~~p~~l~g~~i  243 (767)
                      ++|+.|+|++|+|+.++...+ .++.  ++.|+|++|+|.|+|.+.|+ ..|......   .......|..|..+.+  +
T Consensus       163 ~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~--~  240 (361)
T 2xot_A          163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHN--I  240 (361)
T ss_dssp             TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCCEE--G
T ss_pred             CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHHcC--c
Confidence            999999999999998885432 2333  47899999999999999986 567755431   2235678998876543  2


Q ss_pred             cccccccccCCCCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEE
Q psy12044        244 KQLSIDELACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL  323 (767)
Q Consensus       244 ~~l~~~~l~C~P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~  323 (767)
                      ..+  ..+.|.+   ..+..+++.+|+.+.+.|.+.+ |.|.+.|.+++..+......   ...+..       ..++|.
T Consensus       241 ~~~--~~~~C~~---~~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~---~~r~~~-------~~~~L~  304 (361)
T 2xot_A          241 FSL--DFFNCSE---YKESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGS---NGSVSV-------RNGDLF  304 (361)
T ss_dssp             GGC--CCTTCCS---CCCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCS---SSSEEE-------ETTEEE
T ss_pred             ccc--ccccCCC---ccccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeeccc---CCceEe-------ecCeEE
Confidence            222  2677876   2334568899999999999999 99999999966543322110   001111       235799


Q ss_pred             EeeeccCCCCceeEeeccCCCCcccceEEEEE
Q psy12044        324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       324 I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V~  355 (767)
                      |.+++.+|.|.|+|.|.|..|.....+.+.|.
T Consensus       305 I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  336 (361)
T 2xot_A          305 FKKVQVEDGGVYTCYAMGETFNETLSVELKVY  336 (361)
T ss_dssp             ESSCCTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EeecCcccCEEEEEEEecCCCccEEEEEEEEE
Confidence            99999999999999999999888777766663

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-33  Score=317.78  Aligned_cols=324  Identities=27%  Similarity=0.467  Sum_probs=226.2

Q ss_pred             cCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccc
Q psy12044         16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF   95 (767)
Q Consensus        16 ~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f   95 (767)
                      .+||..|.|...  ...|+|.+.++..+|..++++++.|+|++|.|+++.+..|..  +++|+.|+|++|.|+++.|.+|
T Consensus         1 ~~Cp~~C~C~~~--~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~   76 (477)
T 2id5_A            1 TGCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFAS--FPHLEELELNENIVSAVEPGAF   76 (477)
T ss_dssp             CCCSTTCEEETT--TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTT--CTTCCEEECTTSCCCEECTTTT
T ss_pred             CcccCCCeECCC--CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccC--CCCCCEEECCCCccCEeChhhh
Confidence            379999999743  357999999999999999999999999999999998888874  8888888888888888888888


Q ss_pred             cCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCc------------------------CCCCCccE
Q psy12044         96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAF------------------------QPLSYLVT  151 (767)
Q Consensus        96 ~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~------------------------~~l~~L~~  151 (767)
                      .++++|++|+|++|.|+.+++..|..+++|+.|+|++|.++++.+..|                        ..+++|+.
T Consensus        77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  156 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ  156 (477)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred             hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence            888888888888888888777777777777777776666554433332                        22333333


Q ss_pred             EeccCCCccccch-------------------------------------------------------------------
Q psy12044        152 LELSKCGIEVIED-------------------------------------------------------------------  164 (767)
Q Consensus       152 L~Ls~N~L~~i~~-------------------------------------------------------------------  164 (767)
                      |+|++|.++++++                                                                   
T Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  236 (477)
T 2id5_A          157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL  236 (477)
T ss_dssp             EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred             EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence            3333332222211                                                                   


Q ss_pred             -----hhhcCCCCCCeeeccCC------------------------------------------------ccccccCCCC
Q psy12044        165 -----AAFVGLDSLEWLKLDNN------------------------------------------------KITTISGSNI  191 (767)
Q Consensus       165 -----~~~~~l~~L~~L~Ls~N------------------------------------------------~Lt~ip~~~~  191 (767)
                           ..|..+++|+.|+|++|                                                +|+.++...+
T Consensus       237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  316 (477)
T 2id5_A          237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF  316 (477)
T ss_dssp             CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred             cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence                 11222233333333333                                                3333332221


Q ss_pred             -CCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCccccccc----ccccCC-CCCCC-Cccce
Q psy12044        192 -LPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSI----DELACE-PQITP-STFYL  264 (767)
Q Consensus       192 -~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~----~~l~C~-P~i~~-~~~~~  264 (767)
                       .+++|+.|+|++|+|.|+|.+.|+..|...... ......|..|..+.|..+.++..    ..+.|. |.+.. .+...
T Consensus       317 ~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~-~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~i~~~~~~~~  395 (477)
T 2id5_A          317 HSVGNLETLILDSNPLACDCRLLWVFRRRWRLNF-NRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQV  395 (477)
T ss_dssp             SCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCC-TTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEEESCCSCEEE
T ss_pred             CCCcccCEEEccCCCccCccchHhHHhhhhcccc-CccCceeCCchHHcCCchhhCccccccceeEeccccccccccccE
Confidence             235677788999999999999999887653322 23467899999999998877654    357786 33332 34667


Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+.+|+.+.+.|.+.+.|.|.++|.+++..+......    ..+....      .++|.|.++..+|.|.|+|.|.|..|
T Consensus       396 ~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~----~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~g  465 (477)
T 2id5_A          396 FVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSN----GRLTVFP------DGTLEVRYAQVQDNGTYLCIAANAGG  465 (477)
T ss_dssp             EEETTCCEEECCCEEEESCCEEEEECTTSCBC-----------CEECT------TSCEEESSCCSTTCEEEEEEEEETTE
T ss_pred             EEeCCCeEEEEEeccccCCCEEEEEECCccccccCCC----ceEEeCC------CCEEEEeeCChHHCEEEEEEEEeCCC
Confidence            8899999999999999999999999987655321110    1111111      24699999999999999999999999


Q ss_pred             CcccceEEEE
Q psy12044        345 STSSNYTIRI  354 (767)
Q Consensus       345 ~s~~s~sL~V  354 (767)
                      .....+.+.|
T Consensus       466 ~~~~~~~l~V  475 (477)
T 2id5_A          466 NDSMPAHLHV  475 (477)
T ss_dssp             EEEEEEEEEE
T ss_pred             cEEEEEEEEE
Confidence            8776666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.96  E-value=6e-29  Score=254.30  Aligned_cols=210  Identities=27%  Similarity=0.476  Sum_probs=161.1

Q ss_pred             ccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccc
Q psy12044         15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKA   94 (767)
Q Consensus        15 ~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~   94 (767)
                      +..||+.|.|.|    ..|+|++.++..+|..++++++.|+|++|.|+++++..|..  +++|+.|+|++|.|+++.+..
T Consensus         2 ~~~CP~~C~C~~----~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~--l~~L~~L~Ls~N~i~~~~~~~   75 (220)
T 2v9t_B            2 SLHCPAACTCSN----NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSP--YKKLRRIDLSNNQISELAPDA   75 (220)
T ss_dssp             CCCSCTTSEEET----TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTT--CTTCCEEECCSSCCCEECTTT
T ss_pred             CCCCCCCCEECC----CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhC--CCCCCEEECCCCcCCCcCHHH
Confidence            568999999987    46999999999999998888889998888888887777763  777888888888777777777


Q ss_pred             ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCC
Q psy12044         95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLE  174 (767)
Q Consensus        95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~  174 (767)
                      |.++++|++|+|++|.|+.+++..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|.|+++++..|.      
T Consensus        76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------  149 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS------  149 (220)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT------
T ss_pred             hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh------
Confidence            77777777777777777777766666666666666666666666655555555555555555555544443333      


Q ss_pred             eeeccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccCC
Q psy12044        175 WLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE  254 (767)
Q Consensus       175 ~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C~  254 (767)
                                       .+++|+.|+|++|+|.|+|.+.|+..|+...... .....|..|..++|..+.+++..++.|.
T Consensus       150 -----------------~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~-~~~~~C~~P~~l~g~~l~~l~~~~~~c~  211 (220)
T 2v9t_B          150 -----------------PLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIE-TSGARCTSPRRLANKRIGQIKSKKFRCS  211 (220)
T ss_dssp             -----------------TCTTCCEEECCSSCEECSGGGHHHHHHHHHCCCB-CSCCBEEESGGGTTCBGGGSCGGGCCC-
T ss_pred             -----------------CCCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCC-ccCCCcCCchHHcCCchhhCCHHHCcCc
Confidence                             3456777888999999999999999998875432 3567899999999999999999999885

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.95  E-value=5.7e-28  Score=247.07  Aligned_cols=211  Identities=29%  Similarity=0.519  Sum_probs=159.5

Q ss_pred             ccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCc-hhhhccCCCCccEEEccCCCCCccCcc
Q psy12044         15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHN-EKFQKMGLVNLQKIYLSRCRISVIDSK   93 (767)
Q Consensus        15 ~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~-~~f~~~~L~~L~~L~Ls~N~L~~i~p~   93 (767)
                      ..+||+.|.|.|.    .++|++..+..+|..++..++.|+|++|.|+++.+ ..|..  +++|+.|+|++|.|+++.+.
T Consensus         2 ~~~CP~~C~C~~~----~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~--l~~L~~L~L~~N~i~~i~~~   75 (220)
T 2v70_A            2 SLACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKK--LPQLRKINFSNNKITDIEEG   75 (220)
T ss_dssp             --CCCTTCEEETT----EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGG--CTTCCEEECCSSCCCEECTT
T ss_pred             CCCCCCCCEECCC----EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhcc--CCCCCEEECCCCcCCEECHH
Confidence            4689999999974    69999999999999988888899999999888754 44553  67777777777777777776


Q ss_pred             cccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCC
Q psy12044         94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL  173 (767)
Q Consensus        94 ~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L  173 (767)
                      +|.++++|++|+|++|.|+++++..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|.|+++.+..|.     
T Consensus        76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----  150 (220)
T 2v70_A           76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD-----  150 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-----
T ss_pred             HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-----
Confidence            777777777777777777777766666666666666666666666666666555566555555555555444443     


Q ss_pred             CeeeccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccC
Q psy12044        174 EWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELAC  253 (767)
Q Consensus       174 ~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C  253 (767)
                                        .+++|+.|+|++|+|.|+|.+.|+..|+..... ....+.|..|..++|..+.+++...+.|
T Consensus       151 ------------------~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~-~~~~~~C~~P~~l~g~~l~~l~~~~~~~  211 (220)
T 2v70_A          151 ------------------TLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRI-VTGNPRCQKPYFLKEIPIQDVAIQDFTC  211 (220)
T ss_dssp             ------------------TCTTCCEEECCSCCEECSGGGHHHHHHHHHSCC-BCCCCEEEESGGGTTEEGGGSCGGGCCC
T ss_pred             ------------------CCCCCCEEEecCcCCcCCCchHHHHHHHHhcCc-cccCCccCCChHHCCCChhhCCHHHccc
Confidence                              345667788899999999999999999986543 3456789999999999999999888887


Q ss_pred             CC
Q psy12044        254 EP  255 (767)
Q Consensus       254 ~P  255 (767)
                      ..
T Consensus       212 ~~  213 (220)
T 2v70_A          212 DD  213 (220)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.6e-27  Score=249.79  Aligned_cols=233  Identities=30%  Similarity=0.538  Sum_probs=161.7

Q ss_pred             CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc
Q psy12044         17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR   96 (767)
Q Consensus        17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~   96 (767)
                      +||..|.|.... ...++|++.++..+|..+++++++|+|++|.|+.+++..|..  +++|+.|+|++|.|+++.+..|.
T Consensus         1 ~CP~~C~C~~~~-~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~   77 (285)
T 1ozn_A            1 PCPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFT   77 (285)
T ss_dssp             CCCTTCEEECSS-SCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTT
T ss_pred             CcCCCceECCCC-CeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHccc--CCCCCEEECCCCccceeCHhhcC
Confidence            699999997543 578999999999999999889999999999988888777764  66777777777766666666666


Q ss_pred             CCCCCCEEEccCCC-CCCCCCCCCCCCCC------------------------CcEEECCCCcCcccccCCcCCCCCccE
Q psy12044         97 GLTNLVDLDFSHNV-LQTVPSDTFPDYPS------------------------LMKLTLSGNPIKQIKTGAFQPLSYLVT  151 (767)
Q Consensus        97 ~L~~L~~L~Ls~N~-Lt~l~p~~f~~l~~------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~  151 (767)
                      ++++|++|+|++|. ++.+.+..|..+++                        |+.|+|++|.++.+++..|..+++|+.
T Consensus        78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  157 (285)
T 1ozn_A           78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH  157 (285)
T ss_dssp             TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence            66666666666664 55554444544444                        455555555555444444555566666


Q ss_pred             EeccCCCccccchhhhcCCCCCCeeeccCCccccccCC-------------------------CCCCCCcccccCCCCCC
Q psy12044        152 LELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS-------------------------NILPTGLHGIDLHHNPW  206 (767)
Q Consensus       152 L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~-------------------------~~~~~~L~~L~Ls~N~l  206 (767)
                      |+|++|.|+++++..|..+++|+.|+|++|.|+.+.+.                         +...++|+.|+|++|+|
T Consensus       158 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             EECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            66666666655554455555555555555555443211                         11235677788899999


Q ss_pred             CchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCccccccccccc-C
Q psy12044        207 TCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELA-C  253 (767)
Q Consensus       207 ~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~-C  253 (767)
                      .|+|.+.|+..|++.... ......|..|..+.|..+.++...++. |
T Consensus       238 ~c~~~~~~~~~~l~~~~~-~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          238 VCDCRARPLWAWLQKFRG-SSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             ECSGGGHHHHHHHHHCCS-EECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             cCCCCcHHHHHHHHhccc-ccCccccCCchHhCCcChhhcCHHHhccC
Confidence            999999999999987653 235678999999999999988887765 5

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.95  E-value=5.9e-27  Score=243.90  Aligned_cols=203  Identities=30%  Similarity=0.539  Sum_probs=188.0

Q ss_pred             cCCCCC--ceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcc
Q psy12044         16 SACPTS--CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK   93 (767)
Q Consensus        16 ~~CP~~--C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~   93 (767)
                      .+||..  |.|..  +...++|++..+..+|..++++++.|+|++|.|+++.+..|..  +++|+.|+|++|.|+++.+.
T Consensus         2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~   77 (251)
T 3m19_A            2 KTCETVTGCTCNE--GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRG--LTKLTWLNLDYNQLQTLSAG   77 (251)
T ss_dssp             --CHHHHSSEEEG--GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECTTSCCCCCCTT
T ss_pred             ccCCCCCceEcCC--CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcC--cccCCEEECCCCcCCccCHh
Confidence            369997  99953  2467999999999999999999999999999999999988884  89999999999999999999


Q ss_pred             cccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCC
Q psy12044         94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL  173 (767)
Q Consensus        94 ~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L  173 (767)
                      .|.++++|++|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|
T Consensus        78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  157 (251)
T 3m19_A           78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL  157 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999889999999


Q ss_pred             CeeeccCCccccccCCCC-CCCCcccccCCCCCCCch-hhhhhhhhhhccC
Q psy12044        174 EWLKLDNNKITTISGSNI-LPTGLHGIDLHHNPWTCD-CLLIGLRRWLEST  222 (767)
Q Consensus       174 ~~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l~C~-c~l~~l~~~l~~~  222 (767)
                      +.|+|++|+|+.+++..+ .+++|+.|+|++|+|.|+ |.+.|+..|+...
T Consensus       158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~  208 (251)
T 3m19_A          158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN  208 (251)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence            999999999999987544 568999999999999999 9999999998765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=5.6e-25  Score=234.40  Aligned_cols=200  Identities=26%  Similarity=0.407  Sum_probs=173.1

Q ss_pred             CceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc----------
Q psy12044         21 SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI----------   90 (767)
Q Consensus        21 ~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i----------   90 (767)
                      .|.|..-...+.++|.+.++..+|..++++++.|+|++|.|+++.+..|..  +++|+.|+|++|.|+.+          
T Consensus         3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~l~~L~   80 (290)
T 1p9a_G            3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQVDGTLPVLG   80 (290)
T ss_dssp             SSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTT--CTTCCEEECTTSCCCEEECCSCCTTCC
T ss_pred             cccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhc--CCCCCEEECCCCccCcccCCCCCCcCC
Confidence            476765445688999999999999999999999999999999998877764  55565555555555433          


Q ss_pred             -----------CcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCc
Q psy12044         91 -----------DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGI  159 (767)
Q Consensus        91 -----------~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L  159 (767)
                                 .|..+.++++|++|+|++|+|+++++..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|+|
T Consensus        81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence                       244577888899999999999999888899999999999999999999988889999999999999999


Q ss_pred             cccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccC
Q psy12044        160 EVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLEST  222 (767)
Q Consensus       160 ~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~  222 (767)
                      +.+++..|..+++|+.|+|++|+|+.+|..++...+|+.|+|++|+|.|+|.+.|+..|+...
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~  223 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence            999988888999999999999999999999888889999999999999999999999999865

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.9e-25  Score=238.78  Aligned_cols=224  Identities=26%  Similarity=0.433  Sum_probs=153.8

Q ss_pred             CCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc-------
Q psy12044         18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI-------   90 (767)
Q Consensus        18 CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i-------   90 (767)
                      ||..|.|.|.    .++|++.++..+|..+++++++|+|++|.|+.++...|..  +++|+.|+|++|.|+.+       
T Consensus         1 CP~~C~C~~~----~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~   74 (306)
T 2z66_A            1 CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDK--LTQLTKLSLSSNGLSFKGCCSQSD   74 (306)
T ss_dssp             CCTTCEEETT----EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTT--CTTCSEEECCSSCCCEEEEEEHHH
T ss_pred             CcCCCeeCCC----EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhc--cccCCEEECCCCccCcccCccccc
Confidence            9999999985    5999999999999999999999999999998888766653  55555555555554421       


Q ss_pred             ------------------------------------------Cc-ccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         91 ------------------------------------------DS-KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        91 ------------------------------------------~p-~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                                                                .+ ..|..+++|++|+|++|.+++..+..|..+++|+.
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence                                                      11 23444555555555555554444444444445555


Q ss_pred             EECCC-------------------------CcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCc
Q psy12044        128 LTLSG-------------------------NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNK  182 (767)
Q Consensus       128 L~Ls~-------------------------N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~  182 (767)
                      |+|++                         |.++++.+..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|.
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            55554                         44444444555555666666666666666655556666667777777777


Q ss_pred             cccccCC-CCCC-CCcccccCCCCCCCchhhhhhhhhhhccCCCC--CccCCCCCCCCCCCCCcccccc
Q psy12044        183 ITTISGS-NILP-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTP--MAIDPICSVPPRLSSVTIKQLS  247 (767)
Q Consensus       183 Lt~ip~~-~~~~-~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~--~~~~~~C~~p~~l~g~~i~~l~  247 (767)
                      |+.+.+. +... .+|+.|+|++|+|.|+|.+.|+..|+......  ......|..|..+.|..+..++
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~  303 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN  303 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGCC
T ss_pred             CcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeeec
Confidence            7655433 3333 58999999999999999999999999865432  2357789999999998887663

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=3.8e-24  Score=225.10  Aligned_cols=223  Identities=26%  Similarity=0.504  Sum_probs=153.9

Q ss_pred             CCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCC
Q psy12044         20 TSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT   99 (767)
Q Consensus        20 ~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~   99 (767)
                      ..|.|..  ....++|++.++..+|..++++++.|+|++|.|+.+++..|..  +++|+.|+|++|.|+.+.+..|.+++
T Consensus        10 ~~C~c~~--~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~i~~~~~~~l~   85 (270)
T 2o6q_A           10 GVCSCNN--NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHR--LTKLRLLYLNDNKLQTLPAGIFKELK   85 (270)
T ss_dssp             CSBEEET--TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSS--CTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred             CCCEeCC--CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcC--CCCCCEEECCCCccCeeChhhhcCCC
Confidence            4688853  2468999999999999999888999999999988888777763  66667766666666666555555555


Q ss_pred             CCCEEEccCCCCCCCCCCC------------------------CCCCCCCcEEECCCCcCcccccCCcCCCCCccEEecc
Q psy12044        100 NLVDLDFSHNVLQTVPSDT------------------------FPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELS  155 (767)
Q Consensus       100 ~L~~L~Ls~N~Lt~l~p~~------------------------f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  155 (767)
                      +|++|+|++|.|+.+++..                        |..+++|+.|+|++|.|+.+++..|..+++|+.|+|+
T Consensus        86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A           86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY  165 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence            5666555555555555444                        4445555555555555555555556666677777777


Q ss_pred             CCCccccchhhhcCCCCCCeeeccCCccccccCCCC-CCCCcccccCCCCCCCchhh-hhhhhhhhccCCC---CCccCC
Q psy12044        156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI-LPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTKT---PMAIDP  230 (767)
Q Consensus       156 ~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~~---~~~~~~  230 (767)
                      +|.|+.+++..|..+++|+.|+|++|+|+.++...+ ..++|+.|+|++|+|.|+|. +.++..|+.....   ......
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~  245 (270)
T 2o6q_A          166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTA  245 (270)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCC
T ss_pred             CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCcccc
Confidence            777777766667777788888888888887776544 46789999999999999997 7788888765422   122345


Q ss_pred             CCCCCCCCCCCccccccccc
Q psy12044        231 ICSVPPRLSSVTIKQLSIDE  250 (767)
Q Consensus       231 ~C~~p~~l~g~~i~~l~~~~  250 (767)
                      .|..    .+..+.++...+
T Consensus       246 ~C~~----~~~~~~~~~~~~  261 (270)
T 2o6q_A          246 GCEK----GGKAVLEITEKD  261 (270)
T ss_dssp             BBSS----SCSBGGGCCTTT
T ss_pred             ccCC----CCeEeEEecchh
Confidence            6754    345555554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=4.1e-24  Score=233.43  Aligned_cols=219  Identities=29%  Similarity=0.438  Sum_probs=150.7

Q ss_pred             hhccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCc
Q psy12044         13 KIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS   92 (767)
Q Consensus        13 ~~~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p   92 (767)
                      ..+..|+..|.|.|.+   .++|++..+..+|..+++++++|+|++|.|+++++..|..  +++|+.|+|++|.|+++.+
T Consensus        19 ~~~~~~~~~~~C~~~~---~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~   93 (353)
T 2z80_A           19 KEESSNQASLSCDRNG---ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQR--CVNLQALVLTSNGINTIEE   93 (353)
T ss_dssp             --------CCEECTTS---EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTSCCCEECT
T ss_pred             CccCCCccCCCCCCCe---EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhcc--CCCCCEEECCCCccCccCH
Confidence            4567899999999965   4899999999999999888999999999888887766764  6777777777777777666


Q ss_pred             ccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCccccc--------------------------CCcCCC
Q psy12044         93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT--------------------------GAFQPL  146 (767)
Q Consensus        93 ~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~--------------------------~~~~~l  146 (767)
                      .+|.++++|++|+|++|.|+++++..|..+++|+.|+|++|.++.++.                          ..|..+
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  173 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL  173 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence            666666666666666666666555445555555555555555554433                          333334


Q ss_pred             CCccEEeccCCCccccchh-------------------------------------------------------------
Q psy12044        147 SYLVTLELSKCGIEVIEDA-------------------------------------------------------------  165 (767)
Q Consensus       147 ~~L~~L~Ls~N~L~~i~~~-------------------------------------------------------------  165 (767)
                      ++|+.|+|++|.++++.+.                                                             
T Consensus       174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~  253 (353)
T 2z80_A          174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK  253 (353)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCE
T ss_pred             CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhc
Confidence            4444444444444333221                                                             


Q ss_pred             ------------------hhcCCCCCCeeeccCCccccccCCC-CCCCCcccccCCCCCCCchhh-hhhhhhhhccCCCC
Q psy12044        166 ------------------AFVGLDSLEWLKLDNNKITTISGSN-ILPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTKTP  225 (767)
Q Consensus       166 ------------------~~~~l~~L~~L~Ls~N~Lt~ip~~~-~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~~~  225 (767)
                                        .+..+++|+.|+|++|+|+.++..+ ..+++|+.|+|++|+|.|+|. +.|+..|+......
T Consensus       254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~  333 (353)
T 2z80_A          254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK  333 (353)
T ss_dssp             EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTT
T ss_pred             cccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhcccc
Confidence                              2344567888888888888888776 467899999999999999996 88999999887666


Q ss_pred             CccCCCCCCCC
Q psy12044        226 MAIDPICSVPP  236 (767)
Q Consensus       226 ~~~~~~C~~p~  236 (767)
                      ......|..|.
T Consensus       334 ~~~~~~C~~p~  344 (353)
T 2z80_A          334 EQGSAKCSGSG  344 (353)
T ss_dssp             EESCCBBTTTC
T ss_pred             CCCCcccCCCC
Confidence            55677888763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.91  E-value=7.8e-24  Score=211.58  Aligned_cols=187  Identities=28%  Similarity=0.525  Sum_probs=130.3

Q ss_pred             CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc
Q psy12044         17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR   96 (767)
Q Consensus        17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~   96 (767)
                      +||..|.|.|    +.++|++.++..+|..++.+++.|+|++|.|+++++..                         .|.
T Consensus         1 ~CP~~C~C~~----~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~-------------------------~~~   51 (192)
T 1w8a_A            1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG-------------------------LFG   51 (192)
T ss_dssp             CCCTTSEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSC-------------------------SGG
T ss_pred             CcCCCCEECC----CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCcc-------------------------ccc
Confidence            5999999998    45999999999999888777777777777777665531                         233


Q ss_pred             CCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCee
Q psy12044         97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL  176 (767)
Q Consensus        97 ~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L  176 (767)
                      .+++|++|+|++|.|+++.+..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++.+..|..+      
T Consensus        52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------  125 (192)
T 1w8a_A           52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL------  125 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC------
T ss_pred             cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC------
Confidence            44444445555555555544555555555555555555555555555555566666666666665555444433      


Q ss_pred             eccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccCCCC
Q psy12044        177 KLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQ  256 (767)
Q Consensus       177 ~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C~P~  256 (767)
                                       ++|+.|+|++|+|.|+|.+.|+..|+..... ....+.|..|..+++..+.++..+++.|.+.
T Consensus       126 -----------------~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~-~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          126 -----------------NSLTSLNLASNPFNCNCHLAWFAEWLRKKSL-NGGAARCGAPSKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             -----------------TTCCEEECTTCCBCCSGGGHHHHHHHHHHCC-SGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred             -----------------CCCCEEEeCCCCccCcCcchHHHHHHHHcCC-CCCCCCCCCChHHcCCChhhCcHhhcCcCCC
Confidence                             3455667788889999999999999887533 3356789999999999999999999999744

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.91  E-value=7.5e-24  Score=212.08  Aligned_cols=184  Identities=28%  Similarity=0.477  Sum_probs=123.7

Q ss_pred             cCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccc
Q psy12044         16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF   95 (767)
Q Consensus        16 ~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f   95 (767)
                      ..||..|.|.+    ..++|++.++..+|..++++++.|+|++|.|+.++ ..|..  +++|+.|+|++|.|+.+     
T Consensus         2 ~~CP~~C~C~~----~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~~--l~~L~~L~Ls~N~i~~i-----   69 (193)
T 2wfh_A            2 SRCPTECTCLD----TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELSN--YKHLTLIDLSNNRISTL-----   69 (193)
T ss_dssp             --CCTTCEEET----TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-GGGGG--CTTCCEEECCSSCCCCC-----
T ss_pred             CCCCCCCEeCC----CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-HHhhc--ccCCCEEECCCCcCCEe-----
Confidence            47999999986    46999999999999888888888888887777555 33432  45555555555555544     


Q ss_pred             cCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCe
Q psy12044         96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW  175 (767)
Q Consensus        96 ~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~  175 (767)
                                         ++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+.+++..|..+     
T Consensus        70 -------------------~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-----  125 (193)
T 2wfh_A           70 -------------------SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL-----  125 (193)
T ss_dssp             -------------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-----
T ss_pred             -------------------CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcC-----
Confidence                               44445555555555555555555555445555555555555555554444333333     


Q ss_pred             eeccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccCC
Q psy12044        176 LKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACE  254 (767)
Q Consensus       176 L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C~  254 (767)
                                        ++|+.|+|++|+|.|+|.+.|+..|+..... ......|..|..++|..+.+++...+.|.
T Consensus       126 ------------------~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~-~~~~~~C~~P~~l~g~~l~~~~~~~~~~~  185 (193)
T 2wfh_A          126 ------------------SALSHLAIGANPLYCDCNMQWLSDWVKSEYK-EPGIARCAGPGEMADKLLLTTPSKKFTCA  185 (193)
T ss_dssp             ------------------TTCCEEECCSSCEECSGGGHHHHHHHHHSSC-CCSCCBEEESGGGTTCBTTTSCGGGCCC-
T ss_pred             ------------------ccccEEEeCCCCeecCCcCHHHHHHHHhccC-CCCCcCcCCchHHCCCCcccCChHHeeeh
Confidence                              3455677889999999999999999987532 23557899999999999999988877664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.91  E-value=9e-24  Score=230.05  Aligned_cols=232  Identities=21%  Similarity=0.357  Sum_probs=178.1

Q ss_pred             EEEccCC-CCCCCCCCCCCCCCCCcEEECCC-CcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC
Q psy12044        103 DLDFSHN-VLQTVPSDTFPDYPSLMKLTLSG-NPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN  180 (767)
Q Consensus       103 ~L~Ls~N-~Lt~l~p~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~  180 (767)
                      .++++++ .|+.++.  |..+.+|+.|+|++ |.|+++++..|..+++|+.|+|++|+|+++++..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566666 6776654  77777788888875 888888777788888888888888888888888888888888888888


Q ss_pred             CccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCc-cCCCCCCCCCCCCCcccccccccccCC-CCCC
Q psy12044        181 NKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMA-IDPICSVPPRLSSVTIKQLSIDELACE-PQIT  258 (767)
Q Consensus       181 N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~-~~~~C~~p~~l~g~~i~~l~~~~l~C~-P~i~  258 (767)
                      |+|+.+++..+....|+.|+|.+|+|.|+|.+.|+..|+........ ....|..|..+..     +.  ...|. |.+.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~-----l~--~~~c~~P~i~  162 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAH-----MP--NASCGVPTLK  162 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSC-----CC--CTTCCCCEEE
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHhc-----CC--cccCCCCcee
Confidence            88888888777655699999999999999999999999987655433 6788988874432     22  25675 5555


Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC-ceeE
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG-TFVC  337 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G-tY~C  337 (767)
                      ..+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+.....            .......+.|.|.++...|.| .|.|
T Consensus       163 ~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~------------~~~~~~~~~L~i~~v~~~D~G~~Y~C  230 (347)
T 2ifg_A          163 VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM------------KSGGLPSLGLTLANVTSDLNRKNVTC  230 (347)
T ss_dssp             EECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC------------CCCCSSEEEEEEESCCSTTTTCCEEE
T ss_pred             ccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc------------cceecccceEEEeeCChHHCCCeEEE
Confidence            555667889999999999999999999999997754321110            011234568999999999999 9999


Q ss_pred             eeccCCCCcccceEEEEE
Q psy12044        338 VAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       338 vA~N~~G~s~~s~sL~V~  355 (767)
                      .+.|..|.....+.+.|.
T Consensus       231 ~a~n~~g~~~~~~~l~V~  248 (347)
T 2ifg_A          231 WAENDVGRAEVSVQVNVS  248 (347)
T ss_dssp             CCEETTEECCEEECCCCB
T ss_pred             EEEcCCCCEEEEEEEEEc
Confidence            999998887665555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.8e-23  Score=220.26  Aligned_cols=213  Identities=27%  Similarity=0.420  Sum_probs=153.6

Q ss_pred             CCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCC
Q psy12044         20 TSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT   99 (767)
Q Consensus        20 ~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~   99 (767)
                      .+|.|.+..  ..++|.+.++..+|..+++++++|+|++|.|+++.+..|..  +++|+.|+|++|.|+.+.+..|.+++
T Consensus         1 ~~C~~~~~~--~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~   76 (276)
T 2z62_A            1 EPCVEVVPN--ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLS   76 (276)
T ss_dssp             CCSEEEETT--TEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTT--CTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred             CCceeccCC--ceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhcc--ccCCcEEECCCCcCCccCHHHccCCc
Confidence            368887643  67999999999999999999999999999999988877774  78888888888888888777788888


Q ss_pred             CCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccc-hhhhcCCCCCC----
Q psy12044        100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE-DAAFVGLDSLE----  174 (767)
Q Consensus       100 ~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~-~~~~~~l~~L~----  174 (767)
                      +|++|+|++|.|+++.+..|..+++|+.|+|++|.++++.+..+..+++|+.|+|++|.++++. +..|..+++|+    
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L  156 (276)
T 2z62_A           77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  156 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence            8888888888887777666666666666666666666655545555555555555555554432 33344444444    


Q ss_pred             -----------------------------------------------eeeccCCccccccCCCC-CCCCcccccCCCCCC
Q psy12044        175 -----------------------------------------------WLKLDNNKITTISGSNI-LPTGLHGIDLHHNPW  206 (767)
Q Consensus       175 -----------------------------------------------~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l  206 (767)
                                                                     .|+|++|+|+.++...+ ..++|+.|+|++|+|
T Consensus       157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence                                                           44444455554544432 357888999999999


Q ss_pred             Cchhh-hhhhhhhhccCCCCCccCCCCCCCC
Q psy12044        207 TCDCL-LIGLRRWLESTKTPMAIDPICSVPP  236 (767)
Q Consensus       207 ~C~c~-l~~l~~~l~~~~~~~~~~~~C~~p~  236 (767)
                      .|+|. +.|+..|+............|..+.
T Consensus       237 ~c~c~~l~~l~~~~~~~~~~~~~~~~C~~~~  267 (276)
T 2z62_A          237 DCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  267 (276)
T ss_dssp             CCCTTTTHHHHHHHHHTGGGBCSCCBBTTTC
T ss_pred             cccCCchHHHHHHHHhcccccCCCceeeCCC
Confidence            99996 7888999887655555566787754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.4e-23  Score=210.01  Aligned_cols=161  Identities=31%  Similarity=0.558  Sum_probs=129.6

Q ss_pred             CCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccC
Q psy12044         18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRG   97 (767)
Q Consensus        18 CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~   97 (767)
                      ||..|.|.|.+    ++|.+.++..+|..+++++++|+|++|.|+++++..|..  +++|+.|+|++|+|+.+.+..|..
T Consensus         1 Cp~~C~C~~~~----v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~   74 (208)
T 2o6s_A            1 CPSRCSCSGTT----VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDE--LTSLTQLYLGGNKLQSLPNGVFNK   74 (208)
T ss_dssp             CCTTCEEETTE----EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT--CTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCCEECCCE----EEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcc--cccCcEEECCCCccCccChhhcCC
Confidence            99999999854    999999999999999999999999999999888877764  788888888888888887777888


Q ss_pred             CCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeee
Q psy12044         98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLK  177 (767)
Q Consensus        98 L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~  177 (767)
                      +++|++|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+
T Consensus        75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence            88888888888888888777777788888888888888777776677777777777777777776666566666666666


Q ss_pred             ccCCccc
Q psy12044        178 LDNNKIT  184 (767)
Q Consensus       178 Ls~N~Lt  184 (767)
                      |++|.+.
T Consensus       155 l~~N~~~  161 (208)
T 2o6s_A          155 LHDNPWD  161 (208)
T ss_dssp             CCSCCBC
T ss_pred             ecCCCee
Confidence            6665443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.89  E-value=3.1e-22  Score=205.58  Aligned_cols=175  Identities=30%  Similarity=0.565  Sum_probs=122.2

Q ss_pred             CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc
Q psy12044         17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR   96 (767)
Q Consensus        17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~   96 (767)
                      .....|.|.|.+    |+|++..+..+|..++++|++|+|++|.|+++.+..|..  +++|+.|+|++|.|+.+.+..|.
T Consensus        12 ~~~~~~~Cs~~~----v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~L~~N~l~~i~~~~~~   85 (229)
T 3e6j_A           12 ACPSQCSCSGTT----VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDS--LINLKELYLGSNQLGALPVGVFD   85 (229)
T ss_dssp             CCCTTCEEETTE----EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCCEEeCCE----eEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhC--ccCCcEEECCCCCCCCcChhhcc
Confidence            455689999854    999999999999988888888888888887777666653  66666666666666666555566


Q ss_pred             CCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCee
Q psy12044         97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL  176 (767)
Q Consensus        97 ~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L  176 (767)
                      ++++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+.++                         ..+..+++|+.|
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-------------------------~~~~~l~~L~~L  140 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-------------------------RGIERLTHLTHL  140 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-------------------------TTGGGCTTCSEE
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC-------------------------cccccCCCCCEE
Confidence            6666666666666666665555555555555555555555332                         234455666666


Q ss_pred             eccCCccccccCCC-CCCCCcccccCCCCCCCchhh-hhhhhhhhccC
Q psy12044        177 KLDNNKITTISGSN-ILPTGLHGIDLHHNPWTCDCL-LIGLRRWLEST  222 (767)
Q Consensus       177 ~Ls~N~Lt~ip~~~-~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~  222 (767)
                      +|++|+|+.++... ..+++|+.|+|++|+|.|+|. +.++..|+...
T Consensus       141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~  188 (229)
T 3e6j_A          141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH  188 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC
Confidence            66666666665442 245678888999999999996 88888888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.88  E-value=5.8e-23  Score=223.60  Aligned_cols=313  Identities=16%  Similarity=0.215  Sum_probs=186.5

Q ss_pred             CCCCc-eecccCCeeEEEecCC-CccccccCCC--CCccEEEeeC-CCCCCCCchhhhccCCCCccEEEccCCCCCccCc
Q psy12044         18 CPTSC-ICKWKGGKQTVECVNK-SLITVVEGMD--PNTQVLDYTG-NNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS   92 (767)
Q Consensus        18 CP~~C-~C~~~g~~~~v~C~~~-~L~~iP~~l~--~~L~~L~Ls~-N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p   92 (767)
                      ||..| .|.|.    .|+|++. +|..||. +.  .+|+.|+|++ |.|+++++..|..  |++|+.|+|++|+|+++.+
T Consensus         1 cp~~c~~C~~~----~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~--l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A            1 CPDACCPHGSS----GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRG--LGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             CCSSSCCSSSS----CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS--CCCCSEEECCSSCCCEECT
T ss_pred             CCCcCccccCC----EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc--ccCCCEEECCCCccceeCH
Confidence            99999 99874    4899998 8999998 74  4699999996 9999999888874  8899999999999999988


Q ss_pred             ccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCccccc-CCcCCCCCccEEeccCCCccccchhhhcCCC
Q psy12044         93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIEDAAFVGLD  171 (767)
Q Consensus        93 ~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~  171 (767)
                      .+|.+|++|+.|+|++|+|+++++..|..+. |+.|+|.+|.+..... ..|..+.......+..+.++...+.      
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~------  146 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG------  146 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS------
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh------
Confidence            8899999999999999999998888887766 9999999998875432 1111111111122233333333332      


Q ss_pred             CCCeeeccCCccccccCCCCCCCCcccccCCCCC--CCchhhh--hhhhhhhccCCCCCccCCCC--CCCCCCCCCcccc
Q psy12044        172 SLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP--WTCDCLL--IGLRRWLESTKTPMAIDPIC--SVPPRLSSVTIKQ  245 (767)
Q Consensus       172 ~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~--l~C~c~l--~~l~~~l~~~~~~~~~~~~C--~~p~~l~g~~i~~  245 (767)
                      .|+.+.+..+..-.+.   ..+..+..  ..|..  |.|...-  ...+.|.............-  .....+.-..+..
T Consensus       147 ~l~~l~~~~c~~P~i~---~~~~~~~v--~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~  221 (347)
T 2ifg_A          147 PLAHMPNASCGVPTLK---VQVPNASV--DVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTS  221 (347)
T ss_dssp             CSSCCCCTTCCCCEEE---EECCSSCC--BTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCS
T ss_pred             HHhcCCcccCCCCcee---ccCCceEE--eCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCCh
Confidence            2222222221110000   00011111  11222  2232110  11234554432211100000  0000011111122


Q ss_pred             cccc-cccCCCCC-------------CCCc--cceeecccccccccccccccCCCcEEEeecCeeccCCCccccccccee
Q psy12044        246 LSID-ELACEPQI-------------TPST--FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVY  309 (767)
Q Consensus       246 l~~~-~l~C~P~i-------------~~~~--~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~  309 (767)
                      -+.. .+.|...-             ...+  .......|..+.|.|.+.+.|.|.+.|.+++..+.......     ..
T Consensus       222 ~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~-----~~  296 (347)
T 2ifg_A          222 DLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIF-----TE  296 (347)
T ss_dssp             TTTTCCEEECCEETTEECCEEECCCCBEEEEEEECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEE-----EE
T ss_pred             HHCCCeEEEEEEcCCCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCccee-----eE
Confidence            2223 34453110             0001  12234568899999999999999999999988776432210     11


Q ss_pred             ecc--cCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceEEEE
Q psy12044        310 STE--EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       310 ~~~--~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V  354 (767)
                      ...  .+.....+.|.|.++...|.|.|+|.|.|..|...+.+.+.|
T Consensus       297 ~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  343 (347)
T 2ifg_A          297 FLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF  343 (347)
T ss_dssp             ECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECS
T ss_pred             EEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEe
Confidence            111  122345678999999999999999999999998776665544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=2.1e-22  Score=207.63  Aligned_cols=183  Identities=24%  Similarity=0.380  Sum_probs=167.8

Q ss_pred             cCCCCCceecc-cCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCC-CCccCcc
Q psy12044         16 SACPTSCICKW-KGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCR-ISVIDSK   93 (767)
Q Consensus        16 ~~CP~~C~C~~-~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~-L~~i~p~   93 (767)
                      ..||..|.|.+ ..  ..|+|.+  +..+|. ++.+++.|+|++|+|+++++..|..  +++|+.|+|++|. ++.+.+.
T Consensus         2 ~~cp~~C~C~~~~~--~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~--l~~L~~L~l~~n~~l~~i~~~   74 (239)
T 2xwt_C            2 GCSSPPCECHQEED--FRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSN--LPNISRIYVSIDVTLQQLESH   74 (239)
T ss_dssp             -CCSSSCSEEECST--TEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTTT--CTTCCEEEEECCSSCCEECTT
T ss_pred             CCCCCCCeeCCCCc--ceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHccC--CCCCcEEeCCCCCCcceeCHh
Confidence            57999999975 43  6788976  889999 9999999999999999999988874  8999999999997 9999888


Q ss_pred             cccCCCCCCEEEccC-CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCcc---EEeccCC-Cccccchhhhc
Q psy12044         94 AFRGLTNLVDLDFSH-NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV---TLELSKC-GIEVIEDAAFV  168 (767)
Q Consensus        94 ~f~~L~~L~~L~Ls~-N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~---~L~Ls~N-~L~~i~~~~~~  168 (767)
                      +|.++++|++|+|++ |.|+.+++..|..+++|+.|+|++|.+++++.  |..+.+|+   .|+|++| .++.+++..|.
T Consensus        75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~  152 (239)
T 2xwt_C           75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQ  152 (239)
T ss_dssp             TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred             HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCccccc
Confidence            999999999999999 99999999999999999999999999999765  88888888   9999999 99999998999


Q ss_pred             CCCCCC-eeeccCCccccccCCCCCCCCcccccCCCCC-CC
Q psy12044        169 GLDSLE-WLKLDNNKITTISGSNILPTGLHGIDLHHNP-WT  207 (767)
Q Consensus       169 ~l~~L~-~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~-l~  207 (767)
                      .+++|+ .|+|++|+|+.++...+...+|+.|+|++|+ +.
T Consensus       153 ~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~  193 (239)
T 2xwt_C          153 GLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT  193 (239)
T ss_dssp             TTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCC
T ss_pred             chhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcc
Confidence            999999 9999999999999888777899999999995 75

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=3.8e-22  Score=233.11  Aligned_cols=217  Identities=22%  Similarity=0.298  Sum_probs=178.0

Q ss_pred             eEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCc-hhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044         31 QTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHN-EKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS  107 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~-~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls  107 (767)
                      +.++.++..+..+|..+  .++|+.|+|++|.+.++.+ ..|..  +++|+.|+|++|.+.+..+..|.++++|++|+|+
T Consensus       379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  456 (606)
T 3vq2_A          379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS--LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA  456 (606)
T ss_dssp             CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT--CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhc--cccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence            45666677777777555  5789999999999988877 56663  8999999999999999999999999999999999


Q ss_pred             CCCCCC-CCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccc
Q psy12044        108 HNVLQT-VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTI  186 (767)
Q Consensus       108 ~N~Lt~-l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~i  186 (767)
                      +|.+++ ..|..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|+|+.+
T Consensus       457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  536 (606)
T 3vq2_A          457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS  536 (606)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred             CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence            999998 5778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC-CcccccCCCCCCCchhhhhhhhhhhccCCCCC--ccCCCCCCCCCCCCCcccccccc
Q psy12044        187 SGSNILPT-GLHGIDLHHNPWTCDCLLIGLRRWLESTKTPM--AIDPICSVPPRLSSVTIKQLSID  249 (767)
Q Consensus       187 p~~~~~~~-~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~--~~~~~C~~p~~l~g~~i~~l~~~  249 (767)
                      |..+...+ +|+.|++++|+|.|+|.+.|+..|+.......  .....|..|..+.|..+.+++..
T Consensus       537 p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~  602 (606)
T 3vq2_A          537 KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNS  602 (606)
T ss_dssp             ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC----------------
T ss_pred             CHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCChHhCCCEeeecccc
Confidence            98866554 69999999999999999999999997754332  36788999999999988887655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=1.2e-21  Score=228.74  Aligned_cols=217  Identities=23%  Similarity=0.372  Sum_probs=181.7

Q ss_pred             EEecCCCccccccCC--CCCccEEEeeCCCCCCCCc-hhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         33 VECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHN-EKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        33 v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~-~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      +++.......++..+  .++++.++++.+.+....+ ..|.  .+.+|+.++++.|.+....+..+..+++|+.|+|++|
T Consensus       402 L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~--~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N  479 (635)
T 4g8a_A          402 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  479 (635)
T ss_dssp             EECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             hhccccccccccccccccccccchhhhhccccccccccccc--cccccccccccccccccccccccccchhhhhhhhhhc
Confidence            333333333333333  4678888888777665443 4454  4889999999999999999999999999999999999


Q ss_pred             C-CCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        110 V-LQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       110 ~-Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      . +..+.|..|..+++|+.|+|++|+|+++++..|.++++|+.|+|++|+|+++++..|..+++|+.|+|++|+|+.+++
T Consensus       480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence            8 556778899999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCC-C-CCcccccCCCCCCCchhhhhhhhhhhccCCCCC--ccCCCCCCCCCCCCCcccccccccccCC
Q psy12044        189 SNIL-P-TGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPM--AIDPICSVPPRLSSVTIKQLSIDELACE  254 (767)
Q Consensus       189 ~~~~-~-~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~--~~~~~C~~p~~l~g~~i~~l~~~~l~C~  254 (767)
                      ..+. . .+|+.|+|++|+|.|||.+.|+..|++......  .....|..|..++|..+.+++   ++|.
T Consensus       560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~---~~C~  626 (635)
T 4g8a_A          560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN---ITCQ  626 (635)
T ss_dssp             SCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC---CCC-
T ss_pred             HHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec---cCCC
Confidence            6553 3 689999999999999999999999998765432  356889999999999988874   4564

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=2.6e-21  Score=225.98  Aligned_cols=188  Identities=25%  Similarity=0.341  Sum_probs=164.3

Q ss_pred             cCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccc
Q psy12044         16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF   95 (767)
Q Consensus        16 ~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f   95 (767)
                      ..|..+|.|...  ..+++|++++|+.||.++++++++|+|++|.|+++++..|.+  +++|++|+|++|+|+++.+.+|
T Consensus        21 p~~~~~c~~~~~--~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~--l~~L~~L~Ls~N~i~~i~~~~f   96 (635)
T 4g8a_A           21 PESWEPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAY   96 (635)
T ss_dssp             ----CCSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTTT
T ss_pred             CCCCCCccccCC--CCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhC--CCCCCEEECCCCcCCCcChhHh
Confidence            345557888653  368999999999999999999999999999999999999985  9999999999999999999999


Q ss_pred             cCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcccc-chhhhcCCCCCC
Q psy12044         96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI-EDAAFVGLDSLE  174 (767)
Q Consensus        96 ~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i-~~~~~~~l~~L~  174 (767)
                      .++++|++|+|++|+|+++++..|.++++|++|+|++|.|+++++..|+++++|+.|+|++|.|+.+ .+..+..+++|+
T Consensus        97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A           97 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             cCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999876 467788999999


Q ss_pred             eeeccCCccccccCCCCC-C----CCcccccCCCCCCC
Q psy12044        175 WLKLDNNKITTISGSNIL-P----TGLHGIDLHHNPWT  207 (767)
Q Consensus       175 ~L~Ls~N~Lt~ip~~~~~-~----~~L~~L~Ls~N~l~  207 (767)
                      .|+|++|+|+.+++..+. +    ..+..++++.|.+.
T Consensus       177 ~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          177 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             EEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             hhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence            999999999987654321 1    22345677778775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=2.2e-21  Score=229.90  Aligned_cols=182  Identities=24%  Similarity=0.382  Sum_probs=114.8

Q ss_pred             CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCC--------CCCCCCCCCcEEECCCCcCcccccCCcCC
Q psy12044         74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS--------DTFPDYPSLMKLTLSGNPIKQIKTGAFQP  145 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p--------~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  145 (767)
                      +++|+.|+|++|+|+++.+..|.++++|++|+|++|.++++..        ..|..+++|+.|+|++|.++.+++..|.+
T Consensus       479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~  558 (680)
T 1ziw_A          479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD  558 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence            6677777777777777766677777777777777777765422        23666777777777777777777777778


Q ss_pred             CCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC--CCCCcccccCCCCCCCchhhh-hhhhhhhccC
Q psy12044        146 LSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI--LPTGLHGIDLHHNPWTCDCLL-IGLRRWLEST  222 (767)
Q Consensus       146 l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~--~~~~L~~L~Ls~N~l~C~c~l-~~l~~~l~~~  222 (767)
                      +++|+.|+|++|.|+.+++..|..+++|+.|+|++|+|+.+++..+  .+++|+.|+|++|+|.|+|.+ .|+..|+...
T Consensus       559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~  638 (680)
T 1ziw_A          559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET  638 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC
T ss_pred             ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhc
Confidence            8888888888888888877777778888888888888887776543  357899999999999999996 9999998765


Q ss_pred             CCCC---ccCCCCCCCCCCCCCcccccccccccCCC
Q psy12044        223 KTPM---AIDPICSVPPRLSSVTIKQLSIDELACEP  255 (767)
Q Consensus       223 ~~~~---~~~~~C~~p~~l~g~~i~~l~~~~l~C~P  255 (767)
                      ....   .....|..|..++|..+.+++...+.|.+
T Consensus       639 ~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~  674 (680)
T 1ziw_A          639 HTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSA  674 (680)
T ss_dssp             ------------------------------------
T ss_pred             CcccccccCCcEECCchHHCCCcccccChhhcCCCc
Confidence            4332   24678999999999999999988777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=5.5e-20  Score=193.57  Aligned_cols=188  Identities=28%  Similarity=0.467  Sum_probs=167.2

Q ss_pred             eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      -+.+.+.+..+..++. .-.++|++|+|++|.|+++.  .+.  .+++|+.|+|++|.|+++.+..|.++++|++|+|++
T Consensus        43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            3567888877777663 22689999999999999874  455  389999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      |.|+++++..|..+++|+.|+|++|.++++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|+|+.+++
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            99999999999999999999999999999999889999999999999999999999889999999999999999999887


Q ss_pred             CC-CCCCCcccccCCCCCCCchhh-hhhhhhhhcc
Q psy12044        189 SN-ILPTGLHGIDLHHNPWTCDCL-LIGLRRWLES  221 (767)
Q Consensus       189 ~~-~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~  221 (767)
                      .. ..+++|+.|+|++|+|.|+|. +.++..|...
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~  233 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK  233 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             HHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHh
Confidence            64 467899999999999999996 6666666544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=3.2e-20  Score=200.48  Aligned_cols=185  Identities=28%  Similarity=0.505  Sum_probs=167.2

Q ss_pred             hhccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCc
Q psy12044         13 KIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS   92 (767)
Q Consensus        13 ~~~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p   92 (767)
                      .....||..|.|.+    +.++|++..+..+|..+++.++.|+|++|.|+++++..|.+  +++|+.|+|++|.|+++.|
T Consensus        20 ~~~~~cp~~c~c~l----~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~   93 (330)
T 1xku_A           20 PMGPVCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN--LKNLHTLILINNKISKISP   93 (330)
T ss_dssp             --CCCCCTTCEEET----TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTT--CTTCCEEECCSSCCCCBCT
T ss_pred             cccCCCCCCCcCCC----eEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhcc--CCCCCEEECCCCcCCeeCH
Confidence            34467999999997    45999999999999999999999999999999999988874  8999999999999999999


Q ss_pred             ccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccc--cchhhhcCC
Q psy12044         93 KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEV--IEDAAFVGL  170 (767)
Q Consensus        93 ~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~--i~~~~~~~l  170 (767)
                      ..|.++++|++|+|++|.|+.++...+   ++|+.|+|++|.++++.+..|..+++|+.|+|++|.++.  +.+..|..+
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  170 (330)
T 1xku_A           94 GAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM  170 (330)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred             HHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence            999999999999999999998775543   799999999999999998889999999999999999964  677789999


Q ss_pred             CCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCc
Q psy12044        171 DSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       171 ~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C  208 (767)
                      ++|+.|++++|.++.++....  ++|+.|+|++|.+..
T Consensus       171 ~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          171 KKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITK  206 (330)
T ss_dssp             TTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCE
T ss_pred             CCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCc
Confidence            999999999999999987654  789999999998863

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.83  E-value=3.9e-20  Score=181.68  Aligned_cols=165  Identities=32%  Similarity=0.587  Sum_probs=107.2

Q ss_pred             CCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccC
Q psy12044         18 CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRG   97 (767)
Q Consensus        18 CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~   97 (767)
                      ||..|.|.|.+    ++|.+.++..+|..++++++.|+|++|.|+++++..|                          ..
T Consensus         1 Cp~~C~C~~~~----l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~--------------------------~~   50 (177)
T 2o6r_A            1 CPSRCSCSGTE----IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF--------------------------DK   50 (177)
T ss_dssp             CCTTCEEETTE----EECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTT--------------------------TT
T ss_pred             CcCCCEeCCCE----EEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHh--------------------------cC
Confidence            99999999854    9999999988888777777777776666665554444                          44


Q ss_pred             CCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeee
Q psy12044         98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLK  177 (767)
Q Consensus        98 L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~  177 (767)
                      +++|++|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+       
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-------  123 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL-------  123 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-------
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCC-------
Confidence            4455555555555555555555555566666666666665555555555555555555555555444333333       


Q ss_pred             ccCCccccccCCCCCCCCcccccCCCCCCCchhh-hhhhhhhhccCCCCCccCCCCCCC
Q psy12044        178 LDNNKITTISGSNILPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTKTPMAIDPICSVP  235 (767)
Q Consensus       178 Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~~~~~~~~~C~~p  235 (767)
                                      ++|+.|+|++|+|.|+|. +.++..|+............|..+
T Consensus       124 ----------------~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~~  166 (177)
T 2o6r_A          124 ----------------TSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS  166 (177)
T ss_dssp             ----------------TTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBBTTT
T ss_pred             ----------------cccCEEEecCCCeeccCccHHHHHHHHhhCccccccCcEeCCC
Confidence                            455566777788889997 788888888765544566677653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=4.3e-20  Score=199.76  Aligned_cols=181  Identities=30%  Similarity=0.529  Sum_probs=164.5

Q ss_pred             ccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccc
Q psy12044         15 VSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKA   94 (767)
Q Consensus        15 ~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~   94 (767)
                      ...||..|.|.+.    .++|++..+..+|..++++++.|+|++|.|+++.+..|..  +++|+.|+|++|.|+++.+..
T Consensus        24 ~~~cp~~c~c~l~----~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~   97 (332)
T 2ft3_A           24 SAMCPFGCHCHLR----VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKG--LQHLYALVLVNNKISKIHEKA   97 (332)
T ss_dssp             -CCCCSSCEEETT----EEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECGGG
T ss_pred             cCCCCCCCcccCC----EEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhC--CCCCcEEECCCCccCccCHhH
Confidence            4679999999974    5999999999999999999999999999999999888874  899999999999999999999


Q ss_pred             ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccc--cchhhhcCCCC
Q psy12044         95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEV--IEDAAFVGLDS  172 (767)
Q Consensus        95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~--i~~~~~~~l~~  172 (767)
                      |.++++|++|+|++|.|+.++...+   ++|++|+|++|.++.+++..|..+++|+.|+|++|.++.  +.+..|..+ +
T Consensus        98 ~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~  173 (332)
T 2ft3_A           98 FSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K  173 (332)
T ss_dssp             STTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred             hhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence            9999999999999999998876544   799999999999999998889999999999999999964  677778877 9


Q ss_pred             CCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        173 LEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       173 L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |+.|++++|+++.++....  ++|+.|+|++|.+.
T Consensus       174 L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          174 LNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ  206 (332)
T ss_dssp             CSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC
T ss_pred             cCEEECcCCCCCccCcccc--CCCCEEECCCCcCC
Confidence            9999999999999987654  68999999999876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=5.6e-20  Score=206.93  Aligned_cols=162  Identities=30%  Similarity=0.479  Sum_probs=148.8

Q ss_pred             CCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEec
Q psy12044         75 VNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL  154 (767)
Q Consensus        75 ~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  154 (767)
                      .+|+.|+|++|.+.++.+..|..+++|++|+|++|.|+++++..|..+++|+.|+|++|.++++.+..|..+++|+.|+|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccchhhhcCCCCCCeeeccCCccccccCCCC-CCCCcccccCCCCCCCchhh-hhhhhhhhccCCCCCccCCCC
Q psy12044        155 SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI-LPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTKTPMAIDPIC  232 (767)
Q Consensus       155 s~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~~~~~~~~~C  232 (767)
                      ++|.|+++.+..|..+++|+.|+|++|+|+.++...+ .+++|+.|+|++|+|.|+|. +.|+..|+............|
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~c  434 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC  434 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTTEESCCBB
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCccceeeeeee
Confidence            9999999999999999999999999999999988654 57899999999999999998 788899998776655566677


Q ss_pred             CCCC
Q psy12044        233 SVPP  236 (767)
Q Consensus       233 ~~p~  236 (767)
                      ..+.
T Consensus       435 ~~~~  438 (455)
T 3v47_A          435 SGSG  438 (455)
T ss_dssp             TTTC
T ss_pred             cCCC
Confidence            7643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=208.72  Aligned_cols=200  Identities=22%  Similarity=0.308  Sum_probs=167.9

Q ss_pred             EEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc--CcccccCCCCCCEEEccC
Q psy12044         32 TVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI--DSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        32 ~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i--~p~~f~~L~~L~~L~Ls~  108 (767)
                      .++.++..+..++. .-.++|++|+|++|.+++..+..+..  +++|+.|+|++|+|+++  .|..|..+++|++|+|++
T Consensus       306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~  383 (520)
T 2z7x_B          306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH--LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ  383 (520)
T ss_dssp             EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCC--CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred             EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhcc--CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence            34444444444432 44678999999999999977777774  89999999999999984  457799999999999999


Q ss_pred             CCCCC-CCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044        109 NVLQT-VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS  187 (767)
Q Consensus       109 N~Lt~-l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip  187 (767)
                      |.+++ ++...|..+++|+.|+|++|.+++..+..+.  ++|+.|+|++|.|+.++.. +..+++|+.|+|++|+|+.+|
T Consensus       384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~  460 (520)
T 2z7x_B          384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVP  460 (520)
T ss_dssp             SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCC
T ss_pred             CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchh-hhcCCCCCEEECCCCcCCccC
Confidence            99998 6666788999999999999999887665553  7899999999999977665 458999999999999999999


Q ss_pred             CC-CCCCCCcccccCCCCCCCchhhhhhh-hhhhccCCCCCccCCCCCCCC
Q psy12044        188 GS-NILPTGLHGIDLHHNPWTCDCLLIGL-RRWLESTKTPMAIDPICSVPP  236 (767)
Q Consensus       188 ~~-~~~~~~L~~L~Ls~N~l~C~c~l~~l-~~~l~~~~~~~~~~~~C~~p~  236 (767)
                      .. +..+++|+.|+|++|+|.|+|.+.|+ ..|+.........+..|..|.
T Consensus       461 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p~  511 (520)
T 2z7x_B          461 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  511 (520)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTC
T ss_pred             HHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCcc
Confidence            87 55678999999999999999999999 999988766556778898874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=2e-20  Score=218.63  Aligned_cols=197  Identities=25%  Similarity=0.395  Sum_probs=140.6

Q ss_pred             CCccEEEeeCCCCCCCCch-hhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCC---CCCCCCCCCCC
Q psy12044         49 PNTQVLDYTGNNLKTLHNE-KFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT---VPSDTFPDYPS  124 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~-~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~---l~p~~f~~l~~  124 (767)
                      ++|+.|+|++|.+.+..+. .|.  .+++|+.|+|++|.+.+..+..|..+++|++|+|++|.+++   ..+..|..+++
T Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~  477 (606)
T 3t6q_A          400 PQLELLDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR  477 (606)
T ss_dssp             TTCSEEECTTCCEECCTTCCTTT--TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred             ccCCeEECCCCcCCCcccchhhh--CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence            4555556665555544332 243  25666666666666666666666666667777776666655   22244666677


Q ss_pred             CcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCC-CCCCCcccccCCC
Q psy12044        125 LMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSN-ILPTGLHGIDLHH  203 (767)
Q Consensus       125 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~-~~~~~L~~L~Ls~  203 (767)
                      |+.|+|++|.++++.+..|..+++|+.|+|++|.|+++.+..|..+++| .|+|++|+|+.+++.. ..+++|+.|++++
T Consensus       478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  556 (606)
T 3t6q_A          478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ  556 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred             ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence            7777777777777777777777888888888888888777778778888 8888888888766553 2357889999999


Q ss_pred             CCCCchhhhhhhhhhhccCCCC--CccCCCCCCCCCCCCCccccccc
Q psy12044        204 NPWTCDCLLIGLRRWLESTKTP--MAIDPICSVPPRLSSVTIKQLSI  248 (767)
Q Consensus       204 N~l~C~c~l~~l~~~l~~~~~~--~~~~~~C~~p~~l~g~~i~~l~~  248 (767)
                      |+|.|+|.+.|+..|+......  ......|..|..++|..+.+++.
T Consensus       557 N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~  603 (606)
T 3t6q_A          557 NPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL  603 (606)
T ss_dssp             CCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCCC
T ss_pred             CCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeeec
Confidence            9999999999999999865322  23567899999999998888754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=5.1e-20  Score=207.27  Aligned_cols=167  Identities=25%  Similarity=0.392  Sum_probs=147.0

Q ss_pred             cCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCc-cCccc
Q psy12044         16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV-IDSKA   94 (767)
Q Consensus        16 ~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~-i~p~~   94 (767)
                      ..||..|.|.+    ..++|++.++..+|. +++++++|+|++|.|+++.+..|.+  +++|+.|+|++|.+.+ +.+..
T Consensus         2 ~p~~~~c~~~~----~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~L~~n~~~~~i~~~~   74 (455)
T 3v47_A            2 DPGTSECSVIG----YNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSR--LQDLQFLKVEQQTPGLVIRNNT   74 (455)
T ss_dssp             -----CCEEET----TEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSS--CTTCCEEECCCCSTTCEECTTT
T ss_pred             CCccceeEEEc----cccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhcc--CccccEEECcCCcccceECccc
Confidence            46888999874    469999999999999 8899999999999999998888884  8999999999999984 55778


Q ss_pred             ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccc--cCCcCCCCCccEEeccCCCccccchhh-hcCCC
Q psy12044         95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK--TGAFQPLSYLVTLELSKCGIEVIEDAA-FVGLD  171 (767)
Q Consensus        95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L~Ls~N~L~~i~~~~-~~~l~  171 (767)
                      |.++++|++|+|++|.++++.+..|..+++|++|+|++|.+++..  ...|..+++|+.|+|++|.|+++.+.. |..++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            999999999999999999999999999999999999999999843  445899999999999999999997765 88999


Q ss_pred             CCCeeeccCCccccccCC
Q psy12044        172 SLEWLKLDNNKITTISGS  189 (767)
Q Consensus       172 ~L~~L~Ls~N~Lt~ip~~  189 (767)
                      +|+.|+|++|.++.+.+.
T Consensus       155 ~L~~L~L~~n~l~~~~~~  172 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEE  172 (455)
T ss_dssp             TCCEEECTTCCBSCCCTT
T ss_pred             cccEEeCCCCcccccChh
Confidence            999999999999977654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=4.9e-20  Score=215.26  Aligned_cols=189  Identities=23%  Similarity=0.277  Sum_probs=167.2

Q ss_pred             cCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccc
Q psy12044         16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF   95 (767)
Q Consensus        16 ~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f   95 (767)
                      ..|+..|.|...  ...++|.+.++..+|..++..+++|+|++|.|+++.+..|..  +++|++|+|++|.|..+.|.+|
T Consensus         2 ~~~~~~C~~~~~--~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~~~~~~~   77 (606)
T 3t6q_A            2 TSSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSR--LINLTFLDLTRCQIYWIHEDTF   77 (606)
T ss_dssp             ----CCCEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTT--CTTCSEEECTTCCCCEECTTTT
T ss_pred             ccccCceecccC--CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhcc--CccceEEECCCCccceeChhhc
Confidence            468999999743  368999999999999999999999999999999999988984  9999999999999999999999


Q ss_pred             cCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCe
Q psy12044         96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW  175 (767)
Q Consensus        96 ~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~  175 (767)
                      .++++|++|+|++|.++++.|..|..+++|++|+|++|.++++.+..|..+++|+.|+|++|.++++....+..+++|+.
T Consensus        78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  157 (606)
T 3t6q_A           78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV  157 (606)
T ss_dssp             TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred             cCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence            99999999999999999999999999999999999999999998888999999999999999999976555666999999


Q ss_pred             eeccCCccccccCC-CCCCCCcc--cccCCCCCCCc
Q psy12044        176 LKLDNNKITTISGS-NILPTGLH--GIDLHHNPWTC  208 (767)
Q Consensus       176 L~Ls~N~Lt~ip~~-~~~~~~L~--~L~Ls~N~l~C  208 (767)
                      |+|++|.++.+++. +..+.+|+  .|++++|.+..
T Consensus       158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             EEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence            99999999987543 34556777  78999998864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=5.7e-20  Score=200.69  Aligned_cols=184  Identities=24%  Similarity=0.349  Sum_probs=158.7

Q ss_pred             CCCCC-ceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCc-cCccc
Q psy12044         17 ACPTS-CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV-IDSKA   94 (767)
Q Consensus        17 ~CP~~-C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~-i~p~~   94 (767)
                      +||+. |.|.+    .+|+|++.+++.||.++++++++|+|++|+|+.+++..|..  +++|+.|+|++|.+.+ +.+.+
T Consensus         1 gCp~~~C~C~~----~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~--l~~L~~L~Ls~N~i~~~i~~~~   74 (350)
T 4ay9_X            1 GCHHRICHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSG--FGDLEKIEISQNDVLEVIEADV   74 (350)
T ss_dssp             -CCCSSSEEET----TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTT--CTTCCEEEEECCTTCCEECTTS
T ss_pred             CCCCCccEeeC----CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcC--CCCCCEEECcCCCCCCccChhH
Confidence            69985 99986    46999999999999999999999999999999999999984  9999999999999865 55678


Q ss_pred             ccCCCCCCE-EEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccC-CCccccchhhhcCCC-
Q psy12044         95 FRGLTNLVD-LDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK-CGIEVIEDAAFVGLD-  171 (767)
Q Consensus        95 f~~L~~L~~-L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~L~~i~~~~~~~l~-  171 (767)
                      |.++++|.+ +.++.|+|+.+++..|..+++|+.|++++|.|+.+++..+....++..|++.+ +.+..++...|..+. 
T Consensus        75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~  154 (350)
T 4ay9_X           75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF  154 (350)
T ss_dssp             BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred             hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence            999998875 66678999999999999999999999999999999887777777888888865 578888877777764 


Q ss_pred             CCCeeeccCCccccccCCCCCCCCcccccCCC-CCC
Q psy12044        172 SLEWLKLDNNKITTISGSNILPTGLHGIDLHH-NPW  206 (767)
Q Consensus       172 ~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~-N~l  206 (767)
                      .|+.|+|++|+|+.|+...+...+|..|++.+ |.+
T Consensus       155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l  190 (350)
T 4ay9_X          155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL  190 (350)
T ss_dssp             SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTC
T ss_pred             hhhhhccccccccCCChhhccccchhHHhhccCCcc
Confidence            57889999999999888887777888888875 444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.80  E-value=3.4e-19  Score=208.15  Aligned_cols=185  Identities=26%  Similarity=0.373  Sum_probs=162.9

Q ss_pred             CCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCC
Q psy12044         19 PTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL   98 (767)
Q Consensus        19 P~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L   98 (767)
                      ..+|.|...  ...++|++.++..+|..+++++++|+|++|.|+++.+..|.+  +++|+.|+|++|.|+++.+.+|.++
T Consensus         4 ~~~c~~~~~--~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~i~~~~~~~l   79 (606)
T 3vq2_A            4 LNPCIEVVP--NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSN--FSELQWLDLSRCEIETIEDKAWHGL   79 (606)
T ss_dssp             --CCEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CCCceecCC--CCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccC--CccCcEEeCCCCcccccCHHHhhch
Confidence            344777543  367999999999999999999999999999999999988884  8999999999999999999999999


Q ss_pred             CCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcccc-chhhhcCCCCCCeee
Q psy12044         99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI-EDAAFVGLDSLEWLK  177 (767)
Q Consensus        99 ~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i-~~~~~~~l~~L~~L~  177 (767)
                      ++|++|+|++|.|+++.|..|..+++|++|+|++|.++++++..|..+++|+.|+|++|.++++ .|..|..+++|+.|+
T Consensus        80 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~  159 (606)
T 3vq2_A           80 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD  159 (606)
T ss_dssp             TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred             hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence            9999999999999999999999999999999999999999988899999999999999999874 477899999999999


Q ss_pred             ccCCccccccCCCC-CCCC----cccccCCCCCCC
Q psy12044        178 LDNNKITTISGSNI-LPTG----LHGIDLHHNPWT  207 (767)
Q Consensus       178 Ls~N~Lt~ip~~~~-~~~~----L~~L~Ls~N~l~  207 (767)
                      |++|+++.+++..+ .+.+    +..|++++|.+.
T Consensus       160 Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~  194 (606)
T 3vq2_A          160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID  194 (606)
T ss_dssp             CCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC
T ss_pred             ccCCcceecChhhhhhhhccccccceeeccCCCcc
Confidence            99999998765533 2222    346777777765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=8.6e-19  Score=203.34  Aligned_cols=189  Identities=22%  Similarity=0.279  Sum_probs=159.2

Q ss_pred             EEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccC--cccccCCCCCCEEEccC
Q psy12044         32 TVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID--SKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        32 ~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~--p~~f~~L~~L~~L~Ls~  108 (767)
                      .++.++..+..++. .-.++|++|+|++|.|++..+..+..  +++|+.|+|++|+|+++.  |..|.++++|++|+|++
T Consensus       335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST--LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCS--CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             EEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcc--cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            34444444443332 44678999999999999988877874  899999999999999865  46789999999999999


Q ss_pred             CCCCC-CCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044        109 NVLQT-VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS  187 (767)
Q Consensus       109 N~Lt~-l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip  187 (767)
                      |.+++ ++...|..+++|+.|+|++|.+++..+..+.  ++|+.|+|++|.|+.++...+ .+++|+.|+|++|+|+.+|
T Consensus       413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~  489 (562)
T 3a79_B          413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVP  489 (562)
T ss_dssp             SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCC
T ss_pred             CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCC
Confidence            99998 7777799999999999999999887665543  789999999999998877655 8999999999999999999


Q ss_pred             CC-CCCCCCcccccCCCCCCCchhhhhhhhh-hhccCCCC
Q psy12044        188 GS-NILPTGLHGIDLHHNPWTCDCLLIGLRR-WLESTKTP  225 (767)
Q Consensus       188 ~~-~~~~~~L~~L~Ls~N~l~C~c~l~~l~~-~l~~~~~~  225 (767)
                      .. +..+++|+.|+|++|+|.|+|.+.|+.. |.......
T Consensus       490 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~  529 (562)
T 3a79_B          490 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV  529 (562)
T ss_dssp             TTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCc
Confidence            87 5567899999999999999999999965 87665433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=2.4e-19  Score=218.11  Aligned_cols=214  Identities=26%  Similarity=0.409  Sum_probs=140.5

Q ss_pred             eEEEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044         31 QTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS  107 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls  107 (767)
                      +.++.++..+..++...   .++|+.|+|++|.|+++.+..|..  +++|+.|+|++|.|+++.+..|.++++|+.|+|+
T Consensus       269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG--LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT--CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC--CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            44555555555554332   356666666666666666666653  6666666666666666666666666666666666


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEECCCCcCcccc------------------------------------------------
Q psy12044        108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK------------------------------------------------  139 (767)
Q Consensus       108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~------------------------------------------------  139 (767)
                      +|.|+.+.+..|..+++|+.|+|++|.++++.                                                
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~  426 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP  426 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC
Confidence            66666666555555555555555555443211                                                


Q ss_pred             ----------------------------------------------cCCcCCCCCccEEeccCCCccccchhhhcCCCCC
Q psy12044        140 ----------------------------------------------TGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL  173 (767)
Q Consensus       140 ----------------------------------------------~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L  173 (767)
                                                                    +..|..+++|+.|+|++|.|+++++..|..+++|
T Consensus       427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  506 (844)
T 3j0a_A          427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL  506 (844)
T ss_dssp             TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred             ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence                                                          1224456677777777777777777778888888


Q ss_pred             CeeeccCCccccccCCCCC--------------------CCCcccccCCCCCCCchhhhhhhhhhhccCCCCCc---cCC
Q psy12044        174 EWLKLDNNKITTISGSNIL--------------------PTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMA---IDP  230 (767)
Q Consensus       174 ~~L~Ls~N~Lt~ip~~~~~--------------------~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~---~~~  230 (767)
                      +.|+|++|+|+.+++..+.                    ..+|+.|++++|+|.|+|.+.|+..|+...+....   ...
T Consensus       507 ~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~  586 (844)
T 3j0a_A          507 RGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADI  586 (844)
T ss_dssp             SEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGC
T ss_pred             heeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccC
Confidence            8888888888877665432                    13567788999999999999999999876554332   455


Q ss_pred             CCCCCCCCCCCccccc
Q psy12044        231 ICSVPPRLSSVTIKQL  246 (767)
Q Consensus       231 ~C~~p~~l~g~~i~~l  246 (767)
                      .|..|..+.|..+.++
T Consensus       587 ~C~~p~~~~g~~l~~~  602 (844)
T 3j0a_A          587 YCVYPDSFSGVSLFSL  602 (844)
T ss_dssp             CCSSCSSSCSCCTTTC
T ss_pred             ccCCchhhCCCccccC
Confidence            7888777776655443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=2.9e-19  Score=211.74  Aligned_cols=182  Identities=27%  Similarity=0.408  Sum_probs=166.3

Q ss_pred             CceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCC
Q psy12044         21 SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTN  100 (767)
Q Consensus        21 ~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~  100 (767)
                      +|.|.+    ..++|++.++..+|..+++++++|+|++|.|+++++..|.+  +++|+.|+|++|.++++.+.+|.++++
T Consensus         1 ~C~~~~----~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~   74 (680)
T 1ziw_A            1 KCTVSH----EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFNTISKLEPELCQKLPM   74 (680)
T ss_dssp             ---CBS----SEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGG--GTTCSEEECCSSCCCCCCTTHHHHCTT
T ss_pred             CceeEC----CeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhC--CCcCcEEECCCCccCccCHHHHhcccC
Confidence            478874    57999999999999999999999999999999999998985  899999999999999999999999999


Q ss_pred             CCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC
Q psy12044        101 LVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN  180 (767)
Q Consensus       101 L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~  180 (767)
                      |++|+|++|.|+.+++..|..+++|++|+|++|.++++++..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++
T Consensus        75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  154 (680)
T 1ziw_A           75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN  154 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred             cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence            99999999999999988999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             CccccccCCC---CCCCCcccccCCCCCCCc
Q psy12044        181 NKITTISGSN---ILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       181 N~Lt~ip~~~---~~~~~L~~L~Ls~N~l~C  208 (767)
                      |.++.+++..   ....+|+.|++++|.+..
T Consensus       155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          155 NKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             SCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             CcccccCHHHhhccccccccEEECCCCcccc
Confidence            9999887542   245789999999998863

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=2.8e-18  Score=172.73  Aligned_cols=167  Identities=25%  Similarity=0.417  Sum_probs=150.8

Q ss_pred             cEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECC
Q psy12044         52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS  131 (767)
Q Consensus        52 ~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls  131 (767)
                      +.++++++.++.++...     ..+|+.|+|++|.|+.+.+..|.++++|++|+|++|+|+++++..|..+++|++|+|+
T Consensus        10 ~~v~c~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-----PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCccCCCCCC-----CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            57888999999887554     3589999999999999988889999999999999999999999889999999999999


Q ss_pred             CCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCC-CCCCCcccccCCCCCCCchh
Q psy12044        132 GNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSN-ILPTGLHGIDLHHNPWTCDC  210 (767)
Q Consensus       132 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~-~~~~~L~~L~Ls~N~l~C~c  210 (767)
                      +|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+.++... ..+++|+.|+|++|+|.|+|
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence            99999999988999999999999999999999988999999999999999999998864 45789999999999999999


Q ss_pred             h-hhhhhhhhccCC
Q psy12044        211 L-LIGLRRWLESTK  223 (767)
Q Consensus       211 ~-l~~l~~~l~~~~  223 (767)
                      . +.++..|.....
T Consensus       165 ~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          165 PGIRYLSEWINKHS  178 (208)
T ss_dssp             TTTHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHhCC
Confidence            6 667766665543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.77  E-value=5.7e-19  Score=189.83  Aligned_cols=181  Identities=23%  Similarity=0.338  Sum_probs=92.1

Q ss_pred             CCceecccCCeeEEEecCC--------------Ccc---ccccCC--CCCccEEEeeC-CCCCCCCchhhhccCCCCccE
Q psy12044         20 TSCICKWKGGKQTVECVNK--------------SLI---TVVEGM--DPNTQVLDYTG-NNLKTLHNEKFQKMGLVNLQK   79 (767)
Q Consensus        20 ~~C~C~~~g~~~~v~C~~~--------------~L~---~iP~~l--~~~L~~L~Ls~-N~L~~l~~~~f~~~~L~~L~~   79 (767)
                      ..|.|.|.|    |.|...              .+.   .+|..+  .++|++|+|++ |.+.+..+..|.+  +++|++
T Consensus        32 ~~C~~~w~g----v~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~--l~~L~~  105 (313)
T 1ogq_A           32 DCCNRTWLG----VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--LTQLHY  105 (313)
T ss_dssp             CTTTTCSTT----EEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG--CTTCSE
T ss_pred             CCCcCCCcc----eEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc--CCCCCE
Confidence            357677987    777532              222   233333  34455555553 5555444444442  455555


Q ss_pred             EEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCC-CccEEeccCCC
Q psy12044         80 IYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS-YLVTLELSKCG  158 (767)
Q Consensus        80 L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~  158 (767)
                      |+|++|.|++..|..|.++++|++|+|++|.|++..|..|..+++|++|+|++|.+++..+..+..+. +|+.|+|++|.
T Consensus       106 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             EECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence            55555555555555555555555555555555554445555555555555555555544444454444 55555555555


Q ss_pred             ccccchhhhcCCCCCCeeeccCCcccccc-CCCCCCCCcccccCCCCCCC
Q psy12044        159 IEVIEDAAFVGLDSLEWLKLDNNKITTIS-GSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       159 L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip-~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      +++..+..|..+. |+.|+|++|.|+.+. ..+..+++|+.|+|++|.+.
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence            5554444454444 555555555555322 22333445555555555543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.77  E-value=7.9e-19  Score=203.03  Aligned_cols=203  Identities=27%  Similarity=0.433  Sum_probs=166.6

Q ss_pred             eEEEecCCCcccc---ccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCc-ccccCCCCCCEE
Q psy12044         31 QTVECVNKSLITV---VEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS-KAFRGLTNLVDL  104 (767)
Q Consensus        31 ~~v~C~~~~L~~i---P~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p-~~f~~L~~L~~L  104 (767)
                      +.++.++..+..+   |..+  .++|++|+|++|.+.++++. +.  .+++|+.|+|++|.+.+..+ ..|..+++|++|
T Consensus       350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE--TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc--ccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            3455555555443   2222  46778888888887777665 54  37888999999988888765 568899999999


Q ss_pred             EccCCCCCCCCCCCCCCCCCCcEEECCCCcCc-ccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcc
Q psy12044        105 DFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK-QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI  183 (767)
Q Consensus       105 ~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~L  183 (767)
                      +|++|.+++..+..|..+++|+.|+|++|.++ +..+..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|+|
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence            99999999999899999999999999999998 56677899999999999999999999898999999999999999999


Q ss_pred             ccccCCC-CCCCCcccccCCCCCCCchhhhhhhh-hhhccCCCCCccCCCCCCCC
Q psy12044        184 TTISGSN-ILPTGLHGIDLHHNPWTCDCLLIGLR-RWLESTKTPMAIDPICSVPP  236 (767)
Q Consensus       184 t~ip~~~-~~~~~L~~L~Ls~N~l~C~c~l~~l~-~~l~~~~~~~~~~~~C~~p~  236 (767)
                      +.+++.. ..+++|+.|++++|+|.|+|...|+. .|+............|..|.
T Consensus       507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~~C~~~~  561 (570)
T 2z63_A          507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  561 (570)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCCBBTTTC
T ss_pred             CCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCchhhCCCC
Confidence            9988764 46789999999999999999988887 99887654444444887763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.77  E-value=1.6e-18  Score=200.50  Aligned_cols=184  Identities=26%  Similarity=0.371  Sum_probs=164.8

Q ss_pred             CceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCC
Q psy12044         21 SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTN  100 (767)
Q Consensus        21 ~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~  100 (767)
                      .|.|...  ...++|.+.++..+|..++++++.|+|++|.|+++.+..|..  +++|+.|+|++|.|+++.+.+|.++++
T Consensus         2 ~c~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~i~~i~~~~~~~l~~   77 (570)
T 2z63_A            2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSH   77 (570)
T ss_dssp             CSEEEET--TTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTT--CSSCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CccccCC--CcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhC--CCCceEEECCCCcCCccCcccccCchh
Confidence            5777643  367999999999999999999999999999999999988884  999999999999999999999999999


Q ss_pred             CCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcccc-chhhhcCCCCCCeeecc
Q psy12044        101 LVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI-EDAAFVGLDSLEWLKLD  179 (767)
Q Consensus       101 L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i-~~~~~~~l~~L~~L~Ls  179 (767)
                      |++|+|++|.++.+++..|..+++|++|+|++|.++.+++..|..+++|+.|+|++|.++++ .|..|..+++|+.|+++
T Consensus        78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~  157 (570)
T 2z63_A           78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (570)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence            99999999999999999999999999999999999999888899999999999999999985 47789999999999999


Q ss_pred             CCccccccCCC-CCCCCc----ccccCCCCCCCc
Q psy12044        180 NNKITTISGSN-ILPTGL----HGIDLHHNPWTC  208 (767)
Q Consensus       180 ~N~Lt~ip~~~-~~~~~L----~~L~Ls~N~l~C  208 (767)
                      +|.++.+++.. ..+.+|    ..|++++|.+..
T Consensus       158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~  191 (570)
T 2z63_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (570)
T ss_dssp             TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred             CCccceecHHHccchhccchhhhhcccCCCCcee
Confidence            99999876542 233444    678899998763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.76  E-value=1.3e-18  Score=200.47  Aligned_cols=181  Identities=28%  Similarity=0.390  Sum_probs=161.7

Q ss_pred             ceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCC
Q psy12044         22 CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNL  101 (767)
Q Consensus        22 C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L  101 (767)
                      |.|.|.+   +++|++++++.+|..+++++++|+|++|.|+++.+..|..  +++|++|+|++|.|+++.+.+|.++++|
T Consensus         2 ~~C~~~~---~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   76 (549)
T 2z81_A            2 LSCDASG---VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRA--CANLQVLILKSSRINTIEGDAFYSLGSL   76 (549)
T ss_dssp             CEECTTS---EEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSS--CTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccCCCCc---eEECCCCccccccccCCCCccEEECcCCccCccChhhhhc--CCcccEEECCCCCcCccChhhccccccC
Confidence            4566654   3577889999999999999999999999999999888874  8999999999999999999999999999


Q ss_pred             CEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCccc-ccCCcCCCCCccEEeccCCC-ccccchhhhcCCCCCCeeecc
Q psy12044        102 VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCG-IEVIEDAAFVGLDSLEWLKLD  179 (767)
Q Consensus       102 ~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~-L~~i~~~~~~~l~~L~~L~Ls  179 (767)
                      ++|+|++|.|+++++..|..+++|++|+|++|.++++ .+..|..+++|+.|+|++|. +..+++..|..+++|+.|+|+
T Consensus        77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A           77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence            9999999999999988899999999999999999975 35678999999999999998 677777789999999999999


Q ss_pred             CCcccc-ccCCCCCCCCcccccCCCCCCC
Q psy12044        180 NNKITT-ISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       180 ~N~Lt~-ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      +|.++. ++..+....+|+.|++++|.+.
T Consensus       157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          157 ALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCcccccChhhhhccccCceEecccCccc
Confidence            999996 4555666788999999998865

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=6.4e-18  Score=194.78  Aligned_cols=201  Identities=24%  Similarity=0.301  Sum_probs=154.2

Q ss_pred             eeEEEecCCCccccccCC---CCCccEEEeeCCCCCCCCch---hhhccCCCCccEEEccCCCCCccCc--ccccCCCCC
Q psy12044         30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNE---KFQKMGLVNLQKIYLSRCRISVIDS--KAFRGLTNL  101 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~---~f~~~~L~~L~~L~Ls~N~L~~i~p--~~f~~L~~L  101 (767)
                      -+.++.++..+..+|..+   .++|+.|+|++|.+++..+.   .+.  .+++|+.|+|++|.|+++.+  ..|..+++|
T Consensus       312 L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L  389 (549)
T 2z81_A          312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG--AWPSLQTLVLSQNHLRSMQKTGEILLTLKNL  389 (549)
T ss_dssp             CCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT--SSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred             ceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhh--ccccCcEEEccCCcccccccchhhhhcCCCC
Confidence            355677777777787655   57888888888888875432   233  37788888888888887643  457788888


Q ss_pred             CEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCC-----------------cCCCCCccEEeccCCCccccch
Q psy12044        102 VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA-----------------FQPLSYLVTLELSKCGIEVIED  164 (767)
Q Consensus       102 ~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~-----------------~~~l~~L~~L~Ls~N~L~~i~~  164 (767)
                      ++|+|++|+|+.++ ..+..+++|+.|+|++|.++.++...                 +..+++|+.|+|++|+|+.++.
T Consensus       390 ~~L~Ls~N~l~~lp-~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~  468 (549)
T 2z81_A          390 TSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD  468 (549)
T ss_dssp             CEEECTTCCCCCCC-SCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred             CEEECCCCCCccCC-hhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC
Confidence            88888888888654 45677777777777777776554321                 1367889999999999997765


Q ss_pred             hhhcCCCCCCeeeccCCccccccCC-CCCCCCcccccCCCCCCCchhh-hhhhhhhhccCCCCCccCCCCCCC
Q psy12044        165 AAFVGLDSLEWLKLDNNKITTISGS-NILPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTKTPMAIDPICSVP  235 (767)
Q Consensus       165 ~~~~~l~~L~~L~Ls~N~Lt~ip~~-~~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~~~~~~~~~C~~p  235 (767)
                        +..+++|+.|+|++|+|+++++. +..+++|+.|+|++|+|.|+|. +.|+..|+............|..|
T Consensus       469 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~~C~~~  539 (549)
T 2z81_A          469 --ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS  539 (549)
T ss_dssp             --GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCCBBTTT
T ss_pred             --cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccccCCCCeECCC
Confidence              45689999999999999988876 4467899999999999999999 577888998776655677788876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=3.2e-17  Score=170.19  Aligned_cols=153  Identities=25%  Similarity=0.379  Sum_probs=142.6

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT  129 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~  129 (767)
                      +.+.++++++.++.++....     .+|+.|+|++|.|+++.+..|.++++|++|+|++|.|+++++..|..+++|+.|+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCeEEecCCCCccccCCCCC-----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            56789999999999886543     5899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC-CCCCCCcccccCCCCCCC
Q psy12044        130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS-NILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~-~~~~~~L~~L~Ls~N~l~  207 (767)
                      |++|.|+.+++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|+|+.++.. +..+++|+.|+|++|.+.
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            999999999999999999999999999999999998899999999999999999999885 446789999999999987

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.73  E-value=3.2e-17  Score=176.95  Aligned_cols=172  Identities=23%  Similarity=0.354  Sum_probs=133.4

Q ss_pred             eEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCc--cCcccccCCCCCCEEEccC
Q psy12044         31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV--IDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~--i~p~~f~~L~~L~~L~Ls~  108 (767)
                      +.++.++..+..+|..+.++|++|++++|.|+++.+..|..  +++|+.|+|++|.+..  ..+..|.++++|++|+|++
T Consensus       103 ~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          103 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG--LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             CEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTT--CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             CEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcC--CccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            45666666777777777777777777777777777777763  7788888888887754  5667777888888888888


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      |.++.++...+   ++|+.|+|++|.++++.+..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|.|+.+|.
T Consensus       181 n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~  257 (330)
T 1xku_A          181 TNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  257 (330)
T ss_dssp             SCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             CccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence            88877664432   678888888888888877778888888888888888888877778888888888888888888887


Q ss_pred             CCCCCCCcccccCCCCCCC
Q psy12044        189 SNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       189 ~~~~~~~L~~L~Ls~N~l~  207 (767)
                      .+..+++|+.|+|++|++.
T Consensus       258 ~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          258 GLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             TTTTCSSCCEEECCSSCCC
T ss_pred             hhccCCCcCEEECCCCcCC
Confidence            7777788888888888876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.73  E-value=5.3e-18  Score=182.23  Aligned_cols=175  Identities=19%  Similarity=0.151  Sum_probs=140.8

Q ss_pred             eeEEEecCCCcc-ccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCC-CCCEEE
Q psy12044         30 KQTVECVNKSLI-TVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT-NLVDLD  105 (767)
Q Consensus        30 ~~~v~C~~~~L~-~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~-~L~~L~  105 (767)
                      -+.++.++..+. .+|..+  .++|++|+|++|.|++..+..|..  +++|+.|+|++|.|++..|..|..+. +|++|+
T Consensus       103 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~  180 (313)
T 1ogq_A          103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS--LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred             CCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc--CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence            356777777776 666655  578999999999999877777774  88999999999999988888888887 899999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc-
Q psy12044        106 FSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT-  184 (767)
Q Consensus       106 Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt-  184 (767)
                      |++|.+++..|..|..+. |+.|+|++|.+++..+..|..+++|+.|+|++|.+++.++. +..+++|+.|+|++|+|+ 
T Consensus       181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred             CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence            999988887777787776 88888888888888777888888888888888888877665 677788888888888887 


Q ss_pred             cccCCCCCCCCcccccCCCCCCCc
Q psy12044        185 TISGSNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       185 ~ip~~~~~~~~L~~L~Ls~N~l~C  208 (767)
                      .+|..+..+++|+.|+|++|++..
T Consensus       259 ~~p~~l~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          259 TLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             cCChHHhcCcCCCEEECcCCcccc
Confidence            556556666778888888887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.73  E-value=4e-17  Score=171.35  Aligned_cols=167  Identities=26%  Similarity=0.421  Sum_probs=149.4

Q ss_pred             ceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCC
Q psy12044         22 CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNL  101 (767)
Q Consensus        22 C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L  101 (767)
                      ..|.|.+  ....|..            +++.++++++.|+.++...     ..+|+.|+|++|.|+.+.+..|.++++|
T Consensus         3 ~~C~~~~--~~C~c~~------------~~~~l~~~~~~l~~ip~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L   63 (270)
T 2o6q_A            3 ALCKKDG--GVCSCNN------------NKNSVDCSSKKLTAIPSNI-----PADTKKLDLQSNKLSSLPSKAFHRLTKL   63 (270)
T ss_dssp             CCBGGGT--CSBEEET------------TTTEEECTTSCCSSCCSCC-----CTTCSEEECCSSCCSCCCTTSSSSCTTC
T ss_pred             ccCCCCC--CCCEeCC------------CCCEEEccCCCCCccCCCC-----CCCCCEEECcCCCCCeeCHHHhcCCCCC
Confidence            4588987  2345532            4678999999999987643     2579999999999999988899999999


Q ss_pred             CEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCC
Q psy12044        102 VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNN  181 (767)
Q Consensus       102 ~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N  181 (767)
                      ++|+|++|.|+.+++..|..+++|+.|+|++|.++.+++..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|
T Consensus        64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence            99999999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             ccccccCCC-CCCCCcccccCCCCCCC
Q psy12044        182 KITTISGSN-ILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       182 ~Lt~ip~~~-~~~~~L~~L~Ls~N~l~  207 (767)
                      .|+.++... ..+++|+.|+|++|.+.
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          144 ELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCccCHhHccCCcccceeEecCCcCc
Confidence            999998774 45789999999999886

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.73  E-value=1.2e-17  Score=203.04  Aligned_cols=180  Identities=25%  Similarity=0.246  Sum_probs=153.7

Q ss_pred             CceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCC-ccCcccccCCC
Q psy12044         21 SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRIS-VIDSKAFRGLT   99 (767)
Q Consensus        21 ~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~-~i~p~~f~~L~   99 (767)
                      .|.|.    ...++|++.++..+|. ++++++.|+|++|.|+++.+..|.+  +++|+.|+|++|.+. .+.+.+|.+++
T Consensus         1 ~C~~~----~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~--l~~L~~LdLs~n~~~~~i~~~~f~~L~   73 (844)
T 3j0a_A            1 SCSFD----GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPF--LEQLQLLELGSQYTPLTIDKEAFRNLP   73 (844)
T ss_dssp             CCBTT----TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSS--CCSCSEEEECTTCCCCEECTTTTSSCT
T ss_pred             CceEe----ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcc--cccCeEEeCCCCCCccccCHHHhcCCC
Confidence            47776    3689999999999999 9999999999999999999988985  999999999999554 45588999999


Q ss_pred             CCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccC--CcCCCCCccEEeccCCCccccch-hhhcCCCCCCee
Q psy12044        100 NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG--AFQPLSYLVTLELSKCGIEVIED-AAFVGLDSLEWL  176 (767)
Q Consensus       100 ~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~--~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~~L~~L  176 (767)
                      +|++|+|++|.|+++.|..|..+++|+.|+|++|.+++..+.  .|..+++|+.|+|++|.++++.+ ..|..+++|+.|
T Consensus        74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            999999999999999999999999999999999999985443  48999999999999999998865 578999999999


Q ss_pred             eccCCccccccCCCC-CC--CCcccccCCCCCCC
Q psy12044        177 KLDNNKITTISGSNI-LP--TGLHGIDLHHNPWT  207 (767)
Q Consensus       177 ~Ls~N~Lt~ip~~~~-~~--~~L~~L~Ls~N~l~  207 (767)
                      +|++|.++.+.+..+ ..  .+|+.|+|++|.+.
T Consensus       154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred             ECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence            999999986644322 11  45666666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.72  E-value=9.1e-18  Score=180.56  Aligned_cols=175  Identities=23%  Similarity=0.313  Sum_probs=143.2

Q ss_pred             EEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCC
Q psy12044         32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL  111 (767)
Q Consensus        32 ~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~L  111 (767)
                      .++.++..+..++..  ++|++|++++|.|+++....     +++|+.|+|++|.|+++.+..|..+++|++|+|++|.|
T Consensus        84 ~L~Ls~n~l~~l~~~--~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           84 TLDLNNNYVQELLVG--PSIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             EEECCSSEEEEEEEC--TTCCEEECCSSCCSEEEECC-----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             EEECcCCccccccCC--CCcCEEECCCCccCCcCccc-----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence            344444444444432  55666666666666655433     56899999999999999888899999999999999999


Q ss_pred             CCCCCCCC-CCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCC
Q psy12044        112 QTVPSDTF-PDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSN  190 (767)
Q Consensus       112 t~l~p~~f-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~  190 (767)
                      +++.+..+ ..+++|+.|+|++|.|+.++..  ..+++|+.|+|++|.|+++++. |..+++|+.|+|++|+|+.++..+
T Consensus       157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~  233 (317)
T 3o53_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL  233 (317)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTC
T ss_pred             CcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHh
Confidence            99877766 4789999999999999988543  3589999999999999998775 888999999999999999999888


Q ss_pred             CCCCCcccccCCCCCCCchhhhhhhh
Q psy12044        191 ILPTGLHGIDLHHNPWTCDCLLIGLR  216 (767)
Q Consensus       191 ~~~~~L~~L~Ls~N~l~C~c~l~~l~  216 (767)
                      ..+++|+.|+|++|+|.|+|...++.
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHh
Confidence            78899999999999999987665553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.72  E-value=9.7e-18  Score=194.48  Aligned_cols=162  Identities=25%  Similarity=0.306  Sum_probs=133.6

Q ss_pred             HhhhccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc
Q psy12044         11 IIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI   90 (767)
Q Consensus        11 ~~~~~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i   90 (767)
                      ++....+|+..|.|..   ...++|++.++..+|..+++++++|+|++|.|+++++..|..  +++|+.|+|++|.|+++
T Consensus        17 ~~~~~~~~~~~~~~~~---~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~~   91 (562)
T 3a79_B           17 ALALIVGSMTPFSNEL---ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISF--LSELRVLRLSHNRIRSL   91 (562)
T ss_dssp             -------------------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTT--CTTCCEEECCSCCCCEE
T ss_pred             HHHHHhccccccccCC---CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhcc--CCCccEEECCCCCCCcC
Confidence            3455567777777863   378999999999999999999999999999999999988984  89999999999999999


Q ss_pred             CcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccc-cCCcCCCCCccEEeccCCCccccchhhhcC
Q psy12044         91 DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK-TGAFQPLSYLVTLELSKCGIEVIEDAAFVG  169 (767)
Q Consensus        91 ~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~  169 (767)
                      .|.+|.++++|++|+|++|.|+.++..   .+++|+.|+|++|.++++. +..|.++++|+.|+|++|.|+...   +..
T Consensus        92 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~  165 (562)
T 3a79_B           92 DFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLP  165 (562)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGG
T ss_pred             CHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhh
Confidence            999999999999999999999987755   7999999999999999976 478999999999999999998753   455


Q ss_pred             CCCC--CeeeccCCcc
Q psy12044        170 LDSL--EWLKLDNNKI  183 (767)
Q Consensus       170 l~~L--~~L~Ls~N~L  183 (767)
                      +.+|  +.|+|++|.+
T Consensus       166 l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          166 VAHLHLSCILLDLVSY  181 (562)
T ss_dssp             GTTSCEEEEEEEESSC
T ss_pred             hhhceeeEEEeecccc
Confidence            5555  9999999998

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=3.1e-17  Score=168.81  Aligned_cols=173  Identities=25%  Similarity=0.305  Sum_probs=156.1

Q ss_pred             eeEEEecCCCccccccCC---CCCccEEEeeCCC-CCCCCchhhhccCCCCccEEEccC-CCCCccCcccccCCCCCCEE
Q psy12044         30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNN-LKTLHNEKFQKMGLVNLQKIYLSR-CRISVIDSKAFRGLTNLVDL  104 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~-L~~l~~~~f~~~~L~~L~~L~Ls~-N~L~~i~p~~f~~L~~L~~L  104 (767)
                      -+.++.++..+..+|...   .++|++|+|++|. ++.+++..|..  +++|+.|+|++ |.|+.+.+..|.++++|++|
T Consensus        33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~--l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN--LSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES--CTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC--CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            567899999999998743   5789999999997 99999988874  89999999999 99999999999999999999


Q ss_pred             EccCCCCCCCCCCCCCCCCCCc---EEECCCC-cCcccccCCcCCCCCcc-EEeccCCCccccchhhhcCCCCCCeeecc
Q psy12044        105 DFSHNVLQTVPSDTFPDYPSLM---KLTLSGN-PIKQIKTGAFQPLSYLV-TLELSKCGIEVIEDAAFVGLDSLEWLKLD  179 (767)
Q Consensus       105 ~Ls~N~Lt~l~p~~f~~l~~L~---~L~Ls~N-~l~~l~~~~~~~l~~L~-~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls  179 (767)
                      +|++|.+++++.  |..+++|+   .|+|++| .++.+++..|..+++|+ .|+|++|.|+.+++..|.. .+|+.|+|+
T Consensus       111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            999999999764  88899998   9999999 99999999999999999 9999999999888877776 899999999


Q ss_pred             CCc-cccccCCCC-CC-CCcccccCCCCCCC
Q psy12044        180 NNK-ITTISGSNI-LP-TGLHGIDLHHNPWT  207 (767)
Q Consensus       180 ~N~-Lt~ip~~~~-~~-~~L~~L~Ls~N~l~  207 (767)
                      +|+ |+.++...+ .. ++|+.|+|++|++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            995 999987655 45 79999999999986

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=1.2e-17  Score=190.76  Aligned_cols=159  Identities=23%  Similarity=0.304  Sum_probs=136.3

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCC-CCCCCcE
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFP-DYPSLMK  127 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~-~l~~L~~  127 (767)
                      ++|+.|+|++|.|+++++.     .+++|+.|+|++|.|+++.+..|.++++|+.|+|++|.|+++++..|. .+++|+.
T Consensus        99 ~~L~~L~L~~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~  173 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH  173 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred             CCcCEEECcCCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence            4555556666666555543     257899999999999999898999999999999999999998887775 7899999


Q ss_pred             EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |+|++|.|+++++  +..+++|+.|+|++|.|+++++. |..+++|+.|+|++|.|+.+|..+..+++|+.|+|++|++.
T Consensus       174 L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          174 LNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             EecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            9999999999865  44689999999999999998876 88899999999999999999988888899999999999999


Q ss_pred             chhhhhhh
Q psy12044        208 CDCLLIGL  215 (767)
Q Consensus       208 C~c~l~~l  215 (767)
                      |+|...++
T Consensus       251 c~~~~~~~  258 (487)
T 3oja_A          251 CGTLRDFF  258 (487)
T ss_dssp             HHHHHHHH
T ss_pred             CcchHHHH
Confidence            98765444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=4.3e-17  Score=171.37  Aligned_cols=171  Identities=27%  Similarity=0.389  Sum_probs=154.3

Q ss_pred             eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      -+.++.++..+..++. .-.++|++|+|++|.|+++++..|..  +++|+.|+|++|.|+++.+..|..+++|++|+|++
T Consensus        65 L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  142 (272)
T 3rfs_A           65 VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDK--LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH  142 (272)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcC--CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence            4678888888887752 22678999999999999999988874  89999999999999999998899999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      |.|+++++..|..+++|+.|+|++|.++++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.+...  
T Consensus       143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--  220 (272)
T 3rfs_A          143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--  220 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--
T ss_pred             CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--
Confidence            999999999899999999999999999999998899999999999999999999998899999999999999988743  


Q ss_pred             CCCCCCCcccccCCCCCCCc
Q psy12044        189 SNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       189 ~~~~~~~L~~L~Ls~N~l~C  208 (767)
                          .+.|+.|++..|.+..
T Consensus       221 ----~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          221 ----CPGIRYLSEWINKHSG  236 (272)
T ss_dssp             ----TTTTHHHHHHHHHTGG
T ss_pred             ----CcHHHHHHHHHHhCCC
Confidence                3468888888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.71  E-value=4.8e-17  Score=175.79  Aligned_cols=170  Identities=25%  Similarity=0.300  Sum_probs=104.0

Q ss_pred             EEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCc--cCcccccCCCCCCEEEccCC
Q psy12044         32 TVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV--IDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        32 ~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~--i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      .++.++..+..+|..+.++|++|+|++|.|+.+++..|..  +++|+.|+|++|.++.  ..+..|..+ +|+.|+|++|
T Consensus       106 ~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          106 KLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSG--LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA  182 (332)
T ss_dssp             EEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSS--CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred             EEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCC--CccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence            3444444444555444455555555555555555444442  4555555555555532  444444444 5555555555


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      .+++++...+   ++|+.|+|++|.++++.+..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|+.+|..
T Consensus       183 ~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  259 (332)
T 2ft3_A          183 KLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG  259 (332)
T ss_dssp             BCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             CCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence            5555443221   4666777777777777666677777777777777777777776677777777777777777777766


Q ss_pred             CCCCCCcccccCCCCCCC
Q psy12044        190 NILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       190 ~~~~~~L~~L~Ls~N~l~  207 (767)
                      +..+++|+.|+|++|++.
T Consensus       260 l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             GGGCTTCCEEECCSSCCC
T ss_pred             hhcCccCCEEECCCCCCC
Confidence            666677777777777765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.70  E-value=2.1e-17  Score=177.38  Aligned_cols=155  Identities=18%  Similarity=0.151  Sum_probs=81.3

Q ss_pred             CccEEEeeCCCCCCCCchhh--hccCCCCccEEEccCCCCCccCcccccCC-----CCCCEEEccCCCCCCCCCCCCCCC
Q psy12044         50 NTQVLDYTGNNLKTLHNEKF--QKMGLVNLQKIYLSRCRISVIDSKAFRGL-----TNLVDLDFSHNVLQTVPSDTFPDY  122 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f--~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L-----~~L~~L~Ls~N~Lt~l~p~~f~~l  122 (767)
                      +|++|+|++|.|++..+..+  .  .+++|+.|+|++|.|+++ |..|..+     ++|++|+|++|.|+++++..|..+
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEA--TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSC--CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CccEEEccCCcccchhHHHHHHh--cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            45555555555554333332  2  255566666666665555 4444444     556666666666665555555566


Q ss_pred             CCCcEEECCCCcCccc---c-cCCcCCCCCccEEeccCCCcccc---chhhhcCCCCCCeeeccCCcccccc--CCCCCC
Q psy12044        123 PSLMKLTLSGNPIKQI---K-TGAFQPLSYLVTLELSKCGIEVI---EDAAFVGLDSLEWLKLDNNKITTIS--GSNILP  193 (767)
Q Consensus       123 ~~L~~L~Ls~N~l~~l---~-~~~~~~l~~L~~L~Ls~N~L~~i---~~~~~~~l~~L~~L~Ls~N~Lt~ip--~~~~~~  193 (767)
                      ++|+.|+|++|++.+.   + ...+..+++|+.|+|++|.|+++   ....+..+++|+.|+|++|+|++++  .....+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            6666666666655442   1 11124555666666666655522   2233345556666666666665543  122234


Q ss_pred             CCcccccCCCCCCC
Q psy12044        194 TGLHGIDLHHNPWT  207 (767)
Q Consensus       194 ~~L~~L~Ls~N~l~  207 (767)
                      ++|+.|+|++|.+.
T Consensus       253 ~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK  266 (312)
T ss_dssp             TTCCEEECTTSCCS
T ss_pred             CCCCEEECCCCccC
Confidence            55666666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.70  E-value=5.8e-17  Score=175.41  Aligned_cols=174  Identities=17%  Similarity=0.154  Sum_probs=150.1

Q ss_pred             CeeEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044         29 GKQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF  106 (767)
Q Consensus        29 ~~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L  106 (767)
                      .-..++.++..+..+|..+  .++|++|+|++|.|+.++ ..+..  +++|+.|+|++|.|+. +|..|.++++|++|+|
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~~~~--l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQ--FAGLETLTLARNPLRA-LPASIASLNRLRELSI  157 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCC-SCGGG--GTTCSEEEEESCCCCC-CCGGGGGCTTCCEEEE
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchh-HHHhc--cCCCCEEECCCCcccc-CcHHHhcCcCCCEEEC
Confidence            3567999999999999877  679999999999999665 45553  8999999999999995 4778999999999999


Q ss_pred             cCCCCCCCCCCCCCC---------CCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeee
Q psy12044        107 SHNVLQTVPSDTFPD---------YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLK  177 (767)
Q Consensus       107 s~N~Lt~l~p~~f~~---------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~  177 (767)
                      ++|.+.+..|..+..         +++|+.|+|++|.|+.++ ..|..+++|+.|+|++|.|+++++ .|..+++|+.|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEE
Confidence            998888877776654         999999999999999665 468999999999999999998776 588999999999


Q ss_pred             ccCCccc-cccCCCCCCCCcccccCCCCCCCc
Q psy12044        178 LDNNKIT-TISGSNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       178 Ls~N~Lt-~ip~~~~~~~~L~~L~Ls~N~l~C  208 (767)
                      |++|++. .++..+..+++|+.|+|++|.+..
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence            9998877 556666778999999999998764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=2.9e-16  Score=183.56  Aligned_cols=131  Identities=21%  Similarity=0.358  Sum_probs=105.6

Q ss_pred             eeEEEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044         30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF  106 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L  106 (767)
                      ...+++.+..+..+|..+   .++|+.|+|++|.|+++++..|..  +++|+.|+|++|.|+++.+..|.++++|++|+|
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC--CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            367888888888888765   578888888888888888877774  788888888888888888888888888888888


Q ss_pred             cCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcccc
Q psy12044        107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI  162 (767)
Q Consensus       107 s~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i  162 (767)
                      ++|.|+.+++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            88888888877778888888888888888888777777777777777777766543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.70  E-value=2e-16  Score=174.63  Aligned_cols=177  Identities=19%  Similarity=0.293  Sum_probs=142.3

Q ss_pred             eeEEEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044         30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF  106 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L  106 (767)
                      -+.++..+..+..+|..+   .++|++|+|++|.|+++++..|..  +++|+.|+|++|.|+++.+..|.++++|++|+|
T Consensus        47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC--CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            467888888888898765   578999999999999988888874  889999999999999988888899999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchh---------------------
Q psy12044        107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDA---------------------  165 (767)
Q Consensus       107 s~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~---------------------  165 (767)
                      ++|.|+.+++..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|.++++...                     
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~  204 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  204 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence            99999988887788889999999999999888888888888888888888877654321                     


Q ss_pred             --------------------------------------hhcCCCCCCeeeccCCccccccC-CCCCCCCcccccCCCCCC
Q psy12044        166 --------------------------------------AFVGLDSLEWLKLDNNKITTISG-SNILPTGLHGIDLHHNPW  206 (767)
Q Consensus       166 --------------------------------------~~~~l~~L~~L~Ls~N~Lt~ip~-~~~~~~~L~~L~Ls~N~l  206 (767)
                                                            .+..+++|+.|+|++|.|+.+.+ .+..+++|+.|+|++|.+
T Consensus       205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  284 (390)
T ss_dssp             SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred             CcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence                                                  23445677778888888876643 344567788888888877


Q ss_pred             Cc
Q psy12044        207 TC  208 (767)
Q Consensus       207 ~C  208 (767)
                      ..
T Consensus       285 ~~  286 (390)
T 3o6n_A          285 VA  286 (390)
T ss_dssp             CE
T ss_pred             cc
Confidence            53

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.69  E-value=8.5e-17  Score=157.29  Aligned_cols=115  Identities=33%  Similarity=0.589  Sum_probs=78.5

Q ss_pred             CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc
Q psy12044         17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR   96 (767)
Q Consensus        17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~   96 (767)
                      +||..|.|.|    +.++|++..+..+|..++++++.|+|++|.|+++.+..|..  +++|+.|+|++|+|+++.+..|.
T Consensus         2 ~CP~~C~C~~----~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~l~~~~f~   75 (170)
T 3g39_A            2 ACPSQCSCSG----TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR--LTQLTRLDLDNNQLTVLPAGVFD   75 (170)
T ss_dssp             CCC-CCEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT--CTTCSEEECCSSCCCCCCTTTTT
T ss_pred             cCcCcCCcCC----CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcC--cccCCEEECCCCCcCccChhhcc
Confidence            7999999987    45999999999999888777777777777777776666653  56666666666666666555566


Q ss_pred             CCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcc
Q psy12044         97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ  137 (767)
Q Consensus        97 ~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~  137 (767)
                      ++++|++|+|++|+|+++++..|..+++|+.|+|++|.++.
T Consensus        76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            66666666666666666555555555555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.69  E-value=1.5e-16  Score=175.80  Aligned_cols=171  Identities=22%  Similarity=0.356  Sum_probs=150.7

Q ss_pred             EEecCCCccccccCC-CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCC
Q psy12044         33 VECVNKSLITVVEGM-DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVL  111 (767)
Q Consensus        33 v~C~~~~L~~iP~~l-~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~L  111 (767)
                      +.+........+..+ ..+++.|++++|.++.++...|..  +++|+.|+|++|.|+.+.+..|..+++|++|+|++|.+
T Consensus        28 i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l  105 (390)
T 3o6n_A           28 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS--FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI  105 (390)
T ss_dssp             ECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHH--CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eecccccccccccccccCCceEEEecCCchhhCChhHhcc--cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC
Confidence            333333333333333 578999999999999999988885  89999999999999999998999999999999999999


Q ss_pred             CCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC
Q psy12044        112 QTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI  191 (767)
Q Consensus       112 t~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~  191 (767)
                      +++++..|..+++|+.|+|++|.++.+++..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|.++.++.  .
T Consensus       106 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~  183 (390)
T 3o6n_A          106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--S  183 (390)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--G
T ss_pred             CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--c
Confidence            99999999999999999999999999998888999999999999999999999899999999999999999998753  3


Q ss_pred             CCCCcccccCCCCCCC
Q psy12044        192 LPTGLHGIDLHHNPWT  207 (767)
Q Consensus       192 ~~~~L~~L~Ls~N~l~  207 (767)
                      ..++|+.|++++|.+.
T Consensus       184 ~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          184 LIPSLFHANVSYNLLS  199 (390)
T ss_dssp             GCTTCSEEECCSSCCS
T ss_pred             cccccceeeccccccc
Confidence            4578888888888775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.69  E-value=1.2e-16  Score=172.82  Aligned_cols=155  Identities=19%  Similarity=0.275  Sum_probs=137.4

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      ..+++.|+|++|.|+.++...+.   +++|++|+|++|.|+ .+|..|..+++|++|+|++|.|+.+ |..|..+++|+.
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~---l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFR---LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGG---GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCE
T ss_pred             ccceeEEEccCCCchhcChhhhh---CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCE
Confidence            57899999999999988776543   899999999999999 5678899999999999999999955 567999999999


Q ss_pred             EECCCCcCcccccCCcCC---------CCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCccc
Q psy12044        128 LTLSGNPIKQIKTGAFQP---------LSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHG  198 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~---------l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~  198 (767)
                      |+|++|.+.+..+..+..         +++|+.|+|++|.|+.++ ..|..+++|+.|+|++|.|+.++..+..+++|+.
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~  233 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence            999998888777766654         999999999999999654 5699999999999999999999988778899999


Q ss_pred             ccCCCCCCCc
Q psy12044        199 IDLHHNPWTC  208 (767)
Q Consensus       199 L~Ls~N~l~C  208 (767)
                      |+|++|.+..
T Consensus       234 L~Ls~n~~~~  243 (328)
T 4fcg_A          234 LDLRGCTALR  243 (328)
T ss_dssp             EECTTCTTCC
T ss_pred             EECcCCcchh
Confidence            9999998864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.69  E-value=5.1e-17  Score=195.63  Aligned_cols=178  Identities=21%  Similarity=0.140  Sum_probs=132.4

Q ss_pred             eeEEEecCCCcc-ccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044         30 KQTVECVNKSLI-TVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF  106 (767)
Q Consensus        30 ~~~v~C~~~~L~-~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L  106 (767)
                      -+.++..+..+. .+|..+  .++|+.|+|++|.+++..+..+.+  +++|+.|+|++|++++..|.+|..+++|++|+|
T Consensus       444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  521 (768)
T 3rgz_A          444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN--CTNLNWISLSNNRLTGEIPKWIGRLENLAILKL  521 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc--CCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence            355677666666 556554  567888888888888777777764  778888888888888888888888888888888


Q ss_pred             cCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccC---------------------------------------------
Q psy12044        107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG---------------------------------------------  141 (767)
Q Consensus       107 s~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~---------------------------------------------  141 (767)
                      ++|.+++..|..|..+++|+.|+|++|.+++..|.                                             
T Consensus       522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (768)
T 3rgz_A          522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS  601 (768)
T ss_dssp             CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred             CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence            88888877777788888888888888777644332                                             


Q ss_pred             -------------------------CcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc-cccCCCCCCCC
Q psy12044        142 -------------------------AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT-TISGSNILPTG  195 (767)
Q Consensus       142 -------------------------~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt-~ip~~~~~~~~  195 (767)
                                               .|..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|+|+ .||..+..+++
T Consensus       602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~  681 (768)
T 3rgz_A          602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG  681 (768)
T ss_dssp             GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence                                     2333566777888888888777777777888888888888877 56666666777


Q ss_pred             cccccCCCCCCCch
Q psy12044        196 LHGIDLHHNPWTCD  209 (767)
Q Consensus       196 L~~L~Ls~N~l~C~  209 (767)
                      |+.|+|++|.++..
T Consensus       682 L~~LdLs~N~l~g~  695 (768)
T 3rgz_A          682 LNILDLSSNKLDGR  695 (768)
T ss_dssp             CCEEECCSSCCEEC
T ss_pred             CCEEECCCCcccCc
Confidence            77888888877643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=1.7e-16  Score=185.58  Aligned_cols=172  Identities=23%  Similarity=0.361  Sum_probs=151.2

Q ss_pred             EEEecCCCccccccCC-CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCC
Q psy12044         32 TVECVNKSLITVVEGM-DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNV  110 (767)
Q Consensus        32 ~v~C~~~~L~~iP~~l-~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~  110 (767)
                      .+.|........+..+ ..+++.|++++|.++.+++..|..  +++|+.|+|++|.|+++.+..|..+++|++|+|++|.
T Consensus        33 ~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  110 (597)
T 3oja_B           33 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS--FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA  110 (597)
T ss_dssp             EECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHH--CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             eecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHcc--CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc
Confidence            3444444433333333 578999999999999999998885  8999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCC
Q psy12044        111 LQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSN  190 (767)
Q Consensus       111 Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~  190 (767)
                      |+++++..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+.++.. 
T Consensus       111 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-  189 (597)
T 3oja_B          111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS-  189 (597)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG-
T ss_pred             CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh-
Confidence            9999999999999999999999999999998899999999999999999999999999999999999999999987633 


Q ss_pred             CCCCCcccccCCCCCCC
Q psy12044        191 ILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       191 ~~~~~L~~L~Ls~N~l~  207 (767)
                       .+++|+.|++++|.+.
T Consensus       190 -~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          190 -LIPSLFHANVSYNLLS  205 (597)
T ss_dssp             -GCTTCSEEECCSSCCS
T ss_pred             -hhhhhhhhhcccCccc
Confidence             4467777888877765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=1.1e-16  Score=175.38  Aligned_cols=152  Identities=27%  Similarity=0.278  Sum_probs=140.7

Q ss_pred             cEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc-CCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEEC
Q psy12044         52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR-GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTL  130 (767)
Q Consensus        52 ~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~-~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~L  130 (767)
                      +.++++++.|+.++....     ..|+.|+|++|.|+++.+..|. ++++|+.|+|++|+|+++++..|..+++|+.|+|
T Consensus        21 ~~l~c~~~~l~~iP~~~~-----~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP-----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC-----TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcCccCccCC-----CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            478999999999886543     4689999999999999999898 9999999999999999999999999999999999


Q ss_pred             CCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC----CCCCcccccCCCCCC
Q psy12044        131 SGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI----LPTGLHGIDLHHNPW  206 (767)
Q Consensus       131 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~----~~~~L~~L~Ls~N~l  206 (767)
                      ++|.|+.+++..|..+++|+.|+|++|.|+.+.+..|..+++|+.|+|++|+|+.++...+    .+++|+.|+|++|.+
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999998764    468999999999998


Q ss_pred             Cc
Q psy12044        207 TC  208 (767)
Q Consensus       207 ~C  208 (767)
                      ..
T Consensus       176 ~~  177 (361)
T 2xot_A          176 KK  177 (361)
T ss_dssp             CC
T ss_pred             Cc
Confidence            73

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=8.1e-17  Score=170.05  Aligned_cols=159  Identities=25%  Similarity=0.349  Sum_probs=79.7

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT  129 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~  129 (767)
                      +|++|+|++|.++++.+..|..  +++|+.|+|++|.|+.+.+..|..+++|++|+|++|.|+++++..|..+++|+.|+
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRG--LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCEECHhHhhC--CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence            4444444444444444444432  44444444444444444444444444455555555544444444444455555555


Q ss_pred             CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCch
Q psy12044        130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~  209 (767)
                      |++|.++++.+..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.+..-.........++.+....|.+.|.
T Consensus       184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~  263 (285)
T 1ozn_A          184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS  263 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred             CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccC
Confidence            55555555544455555555555555555555555555555555555555555542221111112355566778888875


Q ss_pred             h
Q psy12044        210 C  210 (767)
Q Consensus       210 c  210 (767)
                      -
T Consensus       264 ~  264 (285)
T 1ozn_A          264 L  264 (285)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=2.5e-16  Score=160.46  Aligned_cols=132  Identities=30%  Similarity=0.413  Sum_probs=123.5

Q ss_pred             cEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECC
Q psy12044         52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS  131 (767)
Q Consensus        52 ~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls  131 (767)
                      +.++++++.|+.++....     .+|+.|+|++|.|+.+.+..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|+
T Consensus        14 ~~v~c~~~~l~~iP~~l~-----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcCcCCCccC-----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            478999999999876532     589999999999999999899999999999999999999999999999999999999


Q ss_pred             CCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        132 GNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       132 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      +|.|+.+++..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|+.++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            999999999999999999999999999999999999999999999999999998764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.67  E-value=1.1e-16  Score=192.63  Aligned_cols=178  Identities=23%  Similarity=0.212  Sum_probs=158.5

Q ss_pred             eeEEEecCCCcc-ccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044         30 KQTVECVNKSLI-TVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF  106 (767)
Q Consensus        30 ~~~v~C~~~~L~-~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L  106 (767)
                      -+.++.++..+. .+|..+  .++|++|+|++|++++..+..+..  +++|+.|+|++|.+++.+|..|..+++|+.|+|
T Consensus       468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  545 (768)
T 3rgz_A          468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR--LENLAILKLSNNSFSGNIPAELGDCRSLIWLDL  545 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred             ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence            467888888887 566655  689999999999999988888885  899999999999999999999999999999999


Q ss_pred             cCCCCCCCCCC---------------------------------------------------------------------
Q psy12044        107 SHNVLQTVPSD---------------------------------------------------------------------  117 (767)
Q Consensus       107 s~N~Lt~l~p~---------------------------------------------------------------------  117 (767)
                      ++|.+++..|.                                                                     
T Consensus       546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~  625 (768)
T 3rgz_A          546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS  625 (768)
T ss_dssp             CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred             CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence            99988765443                                                                     


Q ss_pred             -CCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc-cccCCCCCCCC
Q psy12044        118 -TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT-TISGSNILPTG  195 (767)
Q Consensus       118 -~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt-~ip~~~~~~~~  195 (767)
                       .|..+++|+.|+|++|.+++.+|..|+.+++|+.|+|++|.|++.+|..|..+++|+.|+|++|+|+ .||..+..+.+
T Consensus       626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~  705 (768)
T 3rgz_A          626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM  705 (768)
T ss_dssp             CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred             hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence             3445678999999999999999999999999999999999999999999999999999999999999 66777777889


Q ss_pred             cccccCCCCCCCch
Q psy12044        196 LHGIDLHHNPWTCD  209 (767)
Q Consensus       196 L~~L~Ls~N~l~C~  209 (767)
                      |+.|+|++|++.+.
T Consensus       706 L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          706 LTEIDLSNNNLSGP  719 (768)
T ss_dssp             CSEEECCSSEEEEE
T ss_pred             CCEEECcCCccccc
Confidence            99999999999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.67  E-value=2.6e-16  Score=154.59  Aligned_cols=119  Identities=31%  Similarity=0.564  Sum_probs=84.1

Q ss_pred             hccCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcc
Q psy12044         14 IVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSK   93 (767)
Q Consensus        14 ~~~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~   93 (767)
                      ++.+||..|.|..    ..++|++..+..+|..++++|+.|+|++|.|+++++..|..  +++|+.|+|++|+|+++.+.
T Consensus         2 ~~~~CP~~C~C~~----~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~i~~~   75 (174)
T 2r9u_A            2 HSAGCPSQCSCDQ----TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDH--LVNLQQLYFNSNKLTAIPTG   75 (174)
T ss_dssp             CCCSSCTTSEECS----SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCCCCCCEECC----cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcC--CcCCCEEECCCCCCCccChh
Confidence            3578999999974    57999999999999888888888888888777777666653  66666666666666666555


Q ss_pred             cccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCccc
Q psy12044         94 AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQI  138 (767)
Q Consensus        94 ~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l  138 (767)
                      .|.++++|+.|+|++|+|+++++..|..+++|+.|+|++|.+...
T Consensus        76 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           76 VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            566666666666666666666655555566666666666655433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.67  E-value=5e-16  Score=166.48  Aligned_cols=166  Identities=22%  Similarity=0.290  Sum_probs=141.0

Q ss_pred             eeEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044         30 KQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS  107 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls  107 (767)
                      -+.+++.+..+..+|. +  .++|+.|+|++|.|+++.+  +.  .+++|+.|+|++|.|+++.  .|..+++|++|+|+
T Consensus        43 L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           43 ITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT  115 (308)
T ss_dssp             CCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred             cCEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence            4678888888887763 4  6789999999999998877  55  3889999999999998863  58899999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044        108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS  187 (767)
Q Consensus       108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip  187 (767)
                      +|.|+++++  |..+++|+.|+|++|.++++.+  +..+++|+.|+|++|.|+++.+  +..+++|+.|+|++|.|+.++
T Consensus       116 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             TSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence            999998764  8889999999999999998876  7888999999999999998776  888999999999999999887


Q ss_pred             CCCCCCCCcccccCCCCCCCch
Q psy12044        188 GSNILPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       188 ~~~~~~~~L~~L~Ls~N~l~C~  209 (767)
                      . +..+++|+.|+|++|.+...
T Consensus       190 ~-l~~l~~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          190 P-LASLPNLIEVHLKNNQISDV  210 (308)
T ss_dssp             G-GGGCTTCCEEECTTSCCCBC
T ss_pred             h-hcCCCCCCEEEccCCccCcc
Confidence            6 45668899999999988743

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=6.1e-17  Score=173.72  Aligned_cols=175  Identities=16%  Similarity=0.133  Sum_probs=145.3

Q ss_pred             eeEEEecCCCcc-ccccCC----CCCccEEEeeCCCCCCCCchhhhcc---CCCCccEEEccCCCCCccCcccccCCCCC
Q psy12044         30 KQTVECVNKSLI-TVVEGM----DPNTQVLDYTGNNLKTLHNEKFQKM---GLVNLQKIYLSRCRISVIDSKAFRGLTNL  101 (767)
Q Consensus        30 ~~~v~C~~~~L~-~iP~~l----~~~L~~L~Ls~N~L~~l~~~~f~~~---~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L  101 (767)
                      -+.++.++..+. .+|..+    .++|++|+|++|.|+++ +..+..+   .+++|+.|+|++|.|+++.+..|..+++|
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence            356777777776 577654    67899999999999999 5666541   12899999999999999999999999999


Q ss_pred             CEEEccCCCCCCCC--CC--CCCCCCCCcEEECCCCcCccc---ccCCcCCCCCccEEeccCCCccccch-hhhcCCCCC
Q psy12044        102 VDLDFSHNVLQTVP--SD--TFPDYPSLMKLTLSGNPIKQI---KTGAFQPLSYLVTLELSKCGIEVIED-AAFVGLDSL  173 (767)
Q Consensus       102 ~~L~Ls~N~Lt~l~--p~--~f~~l~~L~~L~Ls~N~l~~l---~~~~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~~L  173 (767)
                      ++|+|++|++.+..  +.  .+..+++|+.|+|++|.|+++   ....+..+++|+.|+|++|.|++.++ ..+..+++|
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence            99999999987641  12  247899999999999999944   33445678999999999999999774 456678999


Q ss_pred             CeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        174 EWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       174 ~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      +.|+|++|+|+.+|..++  ++|+.|+|++|.+.
T Consensus       256 ~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          256 NSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD  287 (312)
T ss_dssp             CEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC
T ss_pred             CEEECCCCccChhhhhcc--CCceEEECCCCCCC
Confidence            999999999999988776  78999999999987

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.66  E-value=3.1e-16  Score=168.03  Aligned_cols=165  Identities=21%  Similarity=0.311  Sum_probs=148.1

Q ss_pred             eeEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044         30 KQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS  107 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls  107 (767)
                      -+.++.++..+..++. +  .++|++|+|++|.|++++  .+.  .+++|+.|+|++|.|+++.+  |..+++|++|+|+
T Consensus        65 L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~  137 (308)
T 1h6u_A           65 LIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLD  137 (308)
T ss_dssp             CCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhc--CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECC
Confidence            4678999988888886 4  578999999999999985  455  38999999999999999743  9999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044        108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS  187 (767)
Q Consensus       108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip  187 (767)
                      +|.++++.+  +..+++|+.|+|++|.++++.+  +..+++|+.|+|++|.|+++.+  +..+++|+.|+|++|+|+.++
T Consensus       138 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          138 LNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred             CCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence            999999876  8899999999999999999876  8899999999999999999876  888999999999999999888


Q ss_pred             CCCCCCCCcccccCCCCCCCc
Q psy12044        188 GSNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       188 ~~~~~~~~L~~L~Ls~N~l~C  208 (767)
                      + +..+++|+.|+|++|++.+
T Consensus       212 ~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          212 P-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G-GTTCTTCCEEEEEEEEEEC
T ss_pred             c-ccCCCCCCEEEccCCeeec
Confidence            5 5667899999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=4.7e-16  Score=165.34  Aligned_cols=151  Identities=22%  Similarity=0.241  Sum_probs=121.4

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL  128 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L  128 (767)
                      ++++.|+++++.|+.++...+     ++|+.|+|++|.|+++.+..|.++++|+.|+|++|.|+++.+.  ..+++|+.|
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             CCccEEECCCCCCCcCCCCCC-----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            579999999999999886543     5799999999999999999999999999999999999887653  567778888


Q ss_pred             ECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC-CCCCcccccCCCCCCC
Q psy12044        129 TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI-LPTGLHGIDLHHNPWT  207 (767)
Q Consensus       129 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l~  207 (767)
                      +|++|.|+.++. .+..+++|+.|+|++|.|+++++..|..+++|+.|+|++|+|+.++...+ .+++|+.|+|++|.+.
T Consensus        83 ~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            888888776643 56677778888888888877777777777778888888887777776654 4567777777777776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=1e-16  Score=194.11  Aligned_cols=117  Identities=19%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             CcccccCCCCCCEEEccCCCCCC-----------------CCCCCCC--CCCCCcEEECCCCcCcccccCCcCCCCCccE
Q psy12044         91 DSKAFRGLTNLVDLDFSHNVLQT-----------------VPSDTFP--DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT  151 (767)
Q Consensus        91 ~p~~f~~L~~L~~L~Ls~N~Lt~-----------------l~p~~f~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  151 (767)
                      +|..|.++++|+.|+|++|.|++                 .+|..+.  .+++|+.|+|++|.+.+..|..|.++++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            34456666666666666666665                 1334444  6666666666666666555555666666666


Q ss_pred             EeccCCC-ccc-cchhhhcCCC-------CCCeeeccCCccccccC--CCCCCCCcccccCCCCCCC
Q psy12044        152 LELSKCG-IEV-IEDAAFVGLD-------SLEWLKLDNNKITTISG--SNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       152 L~Ls~N~-L~~-i~~~~~~~l~-------~L~~L~Ls~N~Lt~ip~--~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |+|++|. |++ ..|..+..+.       +|+.|+|++|+|+.+|.  .+..+++|+.|+|++|.+.
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc
Confidence            6666665 555 4443333333       66666666666665555  4455556666666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=4.7e-16  Score=155.33  Aligned_cols=151  Identities=15%  Similarity=0.133  Sum_probs=131.6

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      .++|+.|++++|.|+.++  .+..  +++|+.|+|++|.++.+  ..|..+++|++|+|++|.+++..+..|..+++|+.
T Consensus        43 l~~L~~L~l~~n~i~~l~--~l~~--l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT--GIEY--AHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT--TGGG--CTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             cCCccEEeccCCCccChH--HHhc--CCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            467999999999999877  3553  89999999999977765  46899999999999999999877788999999999


Q ss_pred             EECCCCcCcccccCCcCCCCCccEEeccCCC-ccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCG-IEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPW  206 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l  206 (767)
                      |+|++|.+++..+..|..+++|+.|+|++|. ++.++  .+..+++|+.|+|++|.|+.++ .+..+++|+.|++++|++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence            9999999998777789999999999999998 87775  5889999999999999999987 555678999999999987


Q ss_pred             C
Q psy12044        207 T  207 (767)
Q Consensus       207 ~  207 (767)
                      .
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=5.1e-16  Score=165.09  Aligned_cols=165  Identities=24%  Similarity=0.337  Sum_probs=127.3

Q ss_pred             eEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         31 QTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      +.+++++..+..++. .-.++|++|+|++|.|+++.+  +.  .+++|+.|+|++|.|+.+.  .+..+++|++|+|++|
T Consensus        49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHN  122 (291)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTS
T ss_pred             cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCCh--hhccCCCCCEEECCCC
Confidence            567777777777653 115778888888888888776  54  3788888888888888753  3788888888888888


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      .|+.+  ..+..+++|+.|+|++|.++++  ..+..+++|+.|+|++|.|+++.+  +..+++|+.|+|++|.|+.++. 
T Consensus       123 ~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-  195 (291)
T 1h6t_A          123 GISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-  195 (291)
T ss_dssp             CCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-
T ss_pred             cCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-
Confidence            88876  3577788888888888888877  357778888888888888888766  7778888888888888888764 


Q ss_pred             CCCCCCcccccCCCCCCCc
Q psy12044        190 NILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       190 ~~~~~~L~~L~Ls~N~l~C  208 (767)
                      +..+++|+.|++++|++.+
T Consensus       196 l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          196 LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GTTCTTCSEEEEEEEEEEC
T ss_pred             hccCCCCCEEECcCCcccC
Confidence            4566788888888887753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.64  E-value=1.3e-15  Score=148.86  Aligned_cols=120  Identities=28%  Similarity=0.474  Sum_probs=90.9

Q ss_pred             CCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC
Q psy12044        101 LVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN  180 (767)
Q Consensus       101 L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~  180 (767)
                      .+.|++++|.|+.++...   .++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|+++++..|..+++|+.|+|++
T Consensus        11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            456677777776665432   25677777777777777777777777777777777777777777777778888888888


Q ss_pred             CccccccCC-CCCCCCcccccCCCCCCCchhh-hhhhhhhhccCC
Q psy12044        181 NKITTISGS-NILPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTK  223 (767)
Q Consensus       181 N~Lt~ip~~-~~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~  223 (767)
                      |+|+.+++. +..+++|+.|+|++|+|.|+|. +.|+..|+....
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~  132 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHP  132 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCc
Confidence            888877765 3456788999999999999995 999999988754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=9.3e-16  Score=160.68  Aligned_cols=162  Identities=24%  Similarity=0.301  Sum_probs=137.4

Q ss_pred             EecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCC
Q psy12044         34 ECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ  112 (767)
Q Consensus        34 ~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt  112 (767)
                      .+....+..++. .-.++|+.|++++|.|+.++  .+..  +++|+.|+|++|.|+++.+  |..+++|++|+|++|+|+
T Consensus        25 ~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~--l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~   98 (263)
T 1xeu_A           25 NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQF--FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK   98 (263)
T ss_dssp             HHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGG--CTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS
T ss_pred             HhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhh--CCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC
Confidence            344455555552 12578999999999999887  4553  8999999999999999866  999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCC
Q psy12044        113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL  192 (767)
Q Consensus       113 ~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~  192 (767)
                      ++++.  .. ++|+.|+|++|.|+++.  .+..+++|+.|+|++|.|+++.  .+..+++|+.|+|++|.|+.+ ..+..
T Consensus        99 ~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~  170 (263)
T 1xeu_A           99 NLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTR  170 (263)
T ss_dssp             CCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred             CcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhcc
Confidence            98653  33 89999999999999985  4889999999999999999985  588999999999999999988 55667


Q ss_pred             CCCcccccCCCCCCCch
Q psy12044        193 PTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       193 ~~~L~~L~Ls~N~l~C~  209 (767)
                      +++|+.|++++|++.|.
T Consensus       171 l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          171 LKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCCCCEEEEEEEEEECC
T ss_pred             CCCCCEEeCCCCcccCC
Confidence            78999999999998764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.63  E-value=3e-16  Score=184.90  Aligned_cols=117  Identities=14%  Similarity=0.111  Sum_probs=86.8

Q ss_pred             CcccccCCCCCCEEEccCCCCCCC-----------------CCCCCC--CCCCCcEEECCCCcCcccccCCcCCCCCccE
Q psy12044         91 DSKAFRGLTNLVDLDFSHNVLQTV-----------------PSDTFP--DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT  151 (767)
Q Consensus        91 ~p~~f~~L~~L~~L~Ls~N~Lt~l-----------------~p~~f~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  151 (767)
                      +|..|+++++|++|+|++|.|++.                 .|..+.  .+++|+.|+|++|.+.+..|..|.++++|+.
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            456677777888888888887773                 556666  7778888888888777777777777778888


Q ss_pred             EeccCCC-ccc-cchhhhcCC------CCCCeeeccCCccccccC--CCCCCCCcccccCCCCCCC
Q psy12044        152 LELSKCG-IEV-IEDAAFVGL------DSLEWLKLDNNKITTISG--SNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       152 L~Ls~N~-L~~-i~~~~~~~l------~~L~~L~Ls~N~Lt~ip~--~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |+|++|. +++ ..|..+..+      ++|+.|+|++|+|+.+|.  .+..+++|+.|+|++|.+.
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc
Confidence            8888776 776 556556555      777788888887777776  5666677777777777766

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.63  E-value=6.6e-16  Score=176.93  Aligned_cols=145  Identities=25%  Similarity=0.286  Sum_probs=133.9

Q ss_pred             eEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCC
Q psy12044         31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNV  110 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~  110 (767)
                      +.++|++.++..+|..+++++++|+|++|.|+++.+..|..  +++|+.|+|++|+|+++.|..|.++++|++|+|++|.
T Consensus         3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILS--LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTT--CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCcccccccccccccEEECCCCcccccChhhccc--cccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            57999999999999999999999999999999999988884  8999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCcEEECCCCcCccc-ccCCcCCCCCccEEeccCCCccccchhhhcCCCCC--CeeeccCCcc
Q psy12044        111 LQTVPSDTFPDYPSLMKLTLSGNPIKQI-KTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL--EWLKLDNNKI  183 (767)
Q Consensus       111 Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L--~~L~Ls~N~L  183 (767)
                      |+.++..   .+++|++|+|++|.++++ .+..|..+++|+.|+|++|.|++.   .|..+.+|  +.|+|++|.+
T Consensus        81 l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           81 LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred             eeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccc
Confidence            9987654   799999999999999985 467899999999999999999873   46777888  9999999998

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=154.75  Aligned_cols=132  Identities=23%  Similarity=0.411  Sum_probs=121.0

Q ss_pred             cEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCc-ccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEEC
Q psy12044         52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDS-KAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTL  130 (767)
Q Consensus        52 ~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p-~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~L  130 (767)
                      +.|++++|.|+.++....     ..++.|+|++|.|+++.+ ..|..+++|+.|+|++|.|+++++..|..+++|+.|+|
T Consensus        14 ~~l~~s~n~l~~iP~~~~-----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP-----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCCcccCccCCC-----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            479999999999876442     467899999999999854 56899999999999999999999999999999999999


Q ss_pred             CCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        131 SGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       131 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      ++|.|+++++..|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++|+|+.+++
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence            9999999999999999999999999999999999999999999999999999998754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.62  E-value=5.4e-16  Score=166.08  Aligned_cols=157  Identities=15%  Similarity=0.092  Sum_probs=127.2

Q ss_pred             CCccEEEeeCCCCCCCCchhh--hccCCCCccEEEccCCCCCccCc----ccccCCCCCCEEEccCCCCCCCCCCCCCCC
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKF--QKMGLVNLQKIYLSRCRISVIDS----KAFRGLTNLVDLDFSHNVLQTVPSDTFPDY  122 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f--~~~~L~~L~~L~Ls~N~L~~i~p----~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l  122 (767)
                      ++|++|+|++|.+.+..+..+  .  .+++|+.|+|++|.|++..+    ..+..+++|++|+|++|.|+++++..|..+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEA--TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSC--CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             CceeEEEeeCCEeccchhhhhhhc--cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            569999999999998877776  4  48899999999999987544    345678899999999999999998899999


Q ss_pred             CCCcEEECCCCcCcc---ccc-CCcCCCCCccEEeccCCCccccchh---hhcCCCCCCeeeccCCccccc-cCCCCCC-
Q psy12044        123 PSLMKLTLSGNPIKQ---IKT-GAFQPLSYLVTLELSKCGIEVIEDA---AFVGLDSLEWLKLDNNKITTI-SGSNILP-  193 (767)
Q Consensus       123 ~~L~~L~Ls~N~l~~---l~~-~~~~~l~~L~~L~Ls~N~L~~i~~~---~~~~l~~L~~L~Ls~N~Lt~i-p~~~~~~-  193 (767)
                      ++|+.|+|++|++.+   +.. ..+..+++|+.|+|++|.|+.+...   .+..+++|+.|+|++|+|+.+ |..+... 
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            999999999999875   332 2346788999999999999765442   356788999999999999877 5555544 


Q ss_pred             --CCcccccCCCCCCC
Q psy12044        194 --TGLHGIDLHHNPWT  207 (767)
Q Consensus       194 --~~L~~L~Ls~N~l~  207 (767)
                        ++|+.|+|++|.+.
T Consensus       249 ~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CCTTCCCEECCSSCCC
T ss_pred             CcCcCCEEECCCCCCC
Confidence              68999999999887

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.1e-15  Score=148.33  Aligned_cols=144  Identities=22%  Similarity=0.259  Sum_probs=124.7

Q ss_pred             ccccCCCCCccEEEeeCCCCC-CCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCC
Q psy12044         42 TVVEGMDPNTQVLDYTGNNLK-TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFP  120 (767)
Q Consensus        42 ~iP~~l~~~L~~L~Ls~N~L~-~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~  120 (767)
                      .++...+++++.|+|++|.|+ +..+..+..  +++|+.|+|++|.|+.+  ..|..+++|++|+|++|.|++..+..+.
T Consensus        17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~~~~--l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   92 (168)
T 2ell_A           17 ELRNRTPAAVRELVLDNCKSNDGKIEGLTAE--FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE   92 (168)
T ss_dssp             HHTTSCTTSCSEEECCSCBCBTTBCSSCCGG--GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred             hhccCCcccCCEEECCCCCCChhhHHHHHHh--CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence            445566789999999999998 333444553  88999999999999988  6799999999999999999997777777


Q ss_pred             CCCCCcEEECCCCcCccccc-CCcCCCCCccEEeccCCCccccch---hhhcCCCCCCeeeccCCccccccCC
Q psy12044        121 DYPSLMKLTLSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIED---AAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       121 ~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~---~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      .+++|+.|+|++|.|++++. ..+..+++|+.|+|++|.|+++++   ..|..+++|+.|++++|.+..++..
T Consensus        93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            79999999999999999764 678899999999999999999887   6788999999999999999988754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.61  E-value=3.4e-15  Score=175.91  Aligned_cols=153  Identities=19%  Similarity=0.226  Sum_probs=101.3

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCC-------CCCEEEccCCCCCCCCCCCCC--
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT-------NLVDLDFSHNVLQTVPSDTFP--  120 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~-------~L~~L~Ls~N~Lt~l~p~~f~--  120 (767)
                      +|+.|+|++|.|+.++...+..  +++|+.|+|++|.|+.+.+..|..+.       +|+.|+|++|.|+.++ ..+.  
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~~~~--l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~  510 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKELFST--GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-DDFRAT  510 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHHHHT--TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-GGGSTT
T ss_pred             CCCEEECcCCccCcCCHHHHcc--CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC-hhhhhc
Confidence            5666666666666666555542  56677777777777655444444332       6777777777777544 3343  


Q ss_pred             CCCCCcEEECCCCcCcccccCCcCCCCCccEEec------cCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCC
Q psy12044        121 DYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLEL------SKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPT  194 (767)
Q Consensus       121 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L------s~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~  194 (767)
                      .+++|+.|+|++|.|+++ |..+..+++|+.|+|      ++|.+.+..|..|..+++|+.|+|++|+|+.||..+.  +
T Consensus       511 ~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~  587 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--P  587 (636)
T ss_dssp             TCTTCCEEECCSSCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--T
T ss_pred             cCCCcCEEECCCCCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--C
Confidence            677777777777777773 445666777777777      4466666666677777777777777777777776644  5


Q ss_pred             CcccccCCCCCCCc
Q psy12044        195 GLHGIDLHHNPWTC  208 (767)
Q Consensus       195 ~L~~L~Ls~N~l~C  208 (767)
                      +|+.|+|++|++.|
T Consensus       588 ~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          588 NISVLDIKDNPNIS  601 (636)
T ss_dssp             TCCEEECCSCTTCE
T ss_pred             cCCEEECcCCCCcc
Confidence            77777777777765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=3.7e-15  Score=172.71  Aligned_cols=154  Identities=19%  Similarity=0.221  Sum_probs=126.3

Q ss_pred             CeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         29 GKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        29 ~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      .-..++|++.++..+|..++++|+.|+|++|.|+.++ .     .+++|+.|+|++|.|+++ |. |.+  +|+.|+|++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E-----LPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c-----ccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECCC
Confidence            3578999999999999999999999999999999877 2     268999999999999995 44 655  899999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      |.|++++.    .+++|+.|+|++|.|++++.    .+++|+.|+|++|.|++++.  |.  ++|+.|+|++|+|+.+|.
T Consensus       130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          130 NQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred             CcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence            99999665    57889999999999988665    46788899999998888665  54  788888888888888877


Q ss_pred             CCCCCCCc-------ccccCCCCCCC
Q psy12044        189 SNILPTGL-------HGIDLHHNPWT  207 (767)
Q Consensus       189 ~~~~~~~L-------~~L~Ls~N~l~  207 (767)
                       +..  +|       +.|+|++|.+.
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             -CC----------CCEEEECCSSCCC
T ss_pred             -HHH--hhhcccccceEEecCCCcce
Confidence             332  66       88888888876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.60  E-value=3.1e-15  Score=157.09  Aligned_cols=133  Identities=24%  Similarity=0.301  Sum_probs=113.5

Q ss_pred             eeEEEecCCCccccccC-C--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044         30 KQTVECVNKSLITVVEG-M--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF  106 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~-l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L  106 (767)
                      -+.++.++..+..++.. +  .++|++|+|++|.|+++.+..|..  +++|+.|+|++|.|+++.+..|.++++|++|+|
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC--CcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46788888888888763 3  578999999999999988888874  889999999999999998888999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCcEEECCCCcCcccc-cCCcCCCCCccEEeccCCCccccch
Q psy12044        107 SHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK-TGAFQPLSYLVTLELSKCGIEVIED  164 (767)
Q Consensus       107 s~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~L~~i~~  164 (767)
                      ++|.++++.+..|..+++|+.|+|++|.++.+. +..|..+++|+.|+|++|.|+++++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            999999988878888999999999999998854 6678888888888888888877654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.60  E-value=6.3e-15  Score=159.65  Aligned_cols=167  Identities=20%  Similarity=0.191  Sum_probs=98.5

Q ss_pred             eEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         31 QTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      +.++..+..+..++. .-.++|+.|++++|.+.++..  +.  .+++|+.|++++|.+..+.+  +..+++|++|+|++|
T Consensus       158 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN  231 (347)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             cEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--cc--CCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence            456666666655553 225667777777777776655  33  25666666666666665543  556666666666666


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      .++.+++  +..+++|+.|+|++|.++.+.  .+..+++|+.|+|++|.++++.  .+..+++|+.|+|++|.++.+++.
T Consensus       232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          232 KITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             ccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChh
Confidence            6666554  556666666666666666552  3555666666666666666552  355566666666666666544322


Q ss_pred             -CCCCCCcccccCCCCCCCch
Q psy12044        190 -NILPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       190 -~~~~~~L~~L~Ls~N~l~C~  209 (767)
                       +..+++|+.|+|++|++...
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCC
T ss_pred             HhhccccCCEEEccCCccccc
Confidence             23345566666666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.60  E-value=2.8e-15  Score=168.50  Aligned_cols=153  Identities=26%  Similarity=0.296  Sum_probs=135.9

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT  129 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~  129 (767)
                      ....++.+++.|+.++....     .+|+.|+|++|+|+.+.+..|.++++|++|+|++|.|+.+.+..|..+++|+.|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS-----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC-----TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcCcCCCCCC-----CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence            35678999999999887543     5799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC-CccccccCCC-CCCCCcccccCCCCCCC
Q psy12044        130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN-NKITTISGSN-ILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~-N~Lt~ip~~~-~~~~~L~~L~Ls~N~l~  207 (767)
                      |++|.|+.+++..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++ |.++.++... ..+++|+.|+|++|.+.
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            999999999999999999999999999999999988888889999999988 5666776643 35678888888888776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=3.6e-15  Score=172.83  Aligned_cols=157  Identities=19%  Similarity=0.237  Sum_probs=137.7

Q ss_pred             eeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      -+.++++++.+..+| .++++|+.|+|++|.|++++.  +.    .+|+.|+|++|.|+++..    .+++|+.|+|++|
T Consensus        82 L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~----~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           82 ITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LP----ASLKHLDVDNNQLTMLPE----LPALLEYINADNN  150 (571)
T ss_dssp             CSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CC----TTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred             CCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hh----cCCCEEECCCCcCCCCCC----cCccccEEeCCCC
Confidence            567999999999999 888999999999999999776  54    289999999999999644    6899999999999


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCC-------CeeeccCCc
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL-------EWLKLDNNK  182 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L-------~~L~Ls~N~  182 (767)
                      .|++++.    .+++|+.|+|++|.|++++.  |.  ++|+.|+|++|.|+.++.  |..  +|       +.|+|++|+
T Consensus       151 ~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          151 QLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             CCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSC
T ss_pred             ccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCc
Confidence            9999764    57899999999999999766  55  899999999999998766  443  67       999999999


Q ss_pred             cccccCCCCCCCCcccccCCCCCCCch
Q psy12044        183 ITTISGSNILPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       183 Lt~ip~~~~~~~~L~~L~Ls~N~l~C~  209 (767)
                      |+.||..++.+++|+.|+|++|++.+.
T Consensus       219 l~~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          219 ITHIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             CCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             ceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence            999999888899999999999999864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.60  E-value=4.6e-15  Score=167.30  Aligned_cols=154  Identities=27%  Similarity=0.250  Sum_probs=137.7

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT  129 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~  129 (767)
                      ....++.+++.++.++...     ..+|+.|+|++|.|+++.+..|.++++|+.|+|++|.|+++.+..|..+++|+.|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGI-----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCcEEEECCCCcCccCCCC-----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence            3567899999999888643     35899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC-CccccccCCC-CCCCCcccccCCCCCCC
Q psy12044        130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN-NKITTISGSN-ILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~-N~Lt~ip~~~-~~~~~L~~L~Ls~N~l~  207 (767)
                      |++|.|+.+++..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++ |.+..++... ..+.+|+.|+|++|.+.
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            999999999999999999999999999999999988899999999999998 5777777653 35678889999988876


Q ss_pred             c
Q psy12044        208 C  208 (767)
Q Consensus       208 C  208 (767)
                      .
T Consensus       210 ~  210 (452)
T 3zyi_A          210 D  210 (452)
T ss_dssp             S
T ss_pred             c
Confidence            3

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.60  E-value=2.6e-15  Score=160.79  Aligned_cols=159  Identities=16%  Similarity=0.082  Sum_probs=118.0

Q ss_pred             CccEEEeeCCCCCCCCch-hhhccCCCCccEEEccCCCCCccCcccc--cCCCCCCEEEccCCCCCCCCC----CCCCCC
Q psy12044         50 NTQVLDYTGNNLKTLHNE-KFQKMGLVNLQKIYLSRCRISVIDSKAF--RGLTNLVDLDFSHNVLQTVPS----DTFPDY  122 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~-~f~~~~L~~L~~L~Ls~N~L~~i~p~~f--~~L~~L~~L~Ls~N~Lt~l~p----~~f~~l  122 (767)
                      .++.|.+.++.++...-. .+....+++|+.|+|++|.+.+..|..+  ..+++|++|+|++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            467788888877642211 1111125678999999999888888777  888899999999998887544    234568


Q ss_pred             CCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcccc---ch-hhhcCCCCCCeeeccCCccccccCC----CCCCC
Q psy12044        123 PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVI---ED-AAFVGLDSLEWLKLDNNKITTISGS----NILPT  194 (767)
Q Consensus       123 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i---~~-~~~~~l~~L~~L~Ls~N~Lt~ip~~----~~~~~  194 (767)
                      ++|+.|+|++|.++++++..|..+++|+.|+|++|.+.+.   .. ..+..+++|+.|+|++|+|+.++..    +..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            8899999999999888888888889999999999987652   22 2235788899999999988866542    22457


Q ss_pred             CcccccCCCCCCCc
Q psy12044        195 GLHGIDLHHNPWTC  208 (767)
Q Consensus       195 ~L~~L~Ls~N~l~C  208 (767)
                      +|+.|+|++|.+..
T Consensus       225 ~L~~L~Ls~N~l~~  238 (310)
T 4glp_A          225 QPHSLDLSHNSLRA  238 (310)
T ss_dssp             CCSSEECTTSCCCC
T ss_pred             CCCEEECCCCCCCc
Confidence            88889999988864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.59  E-value=6.8e-16  Score=176.15  Aligned_cols=175  Identities=17%  Similarity=0.183  Sum_probs=148.7

Q ss_pred             eEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc-CCCCCCEEEccCC
Q psy12044         31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR-GLTNLVDLDFSHN  109 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~-~L~~L~~L~Ls~N  109 (767)
                      ..++.+++.+..++...+++|+.|+|++|.|+++.+..|..  +++|+.|+|++|.|+++.+..|. .+++|+.|+|++|
T Consensus       102 ~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             CEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGG--GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcC--CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            45667777777777777789999999999999999888875  89999999999999998888886 7999999999999


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc--ccc
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT--TIS  187 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt--~ip  187 (767)
                      .|+++++  +..+++|+.|+|++|.|+++++. |..+++|+.|+|++|.|++++. .+..+++|+.|+|++|.+.  .++
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             ccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCcCcchH
Confidence            9999864  34689999999999999999875 8899999999999999998765 5888999999999999998  555


Q ss_pred             CCCCCCCCcccccCC-------CCCCCchhh
Q psy12044        188 GSNILPTGLHGIDLH-------HNPWTCDCL  211 (767)
Q Consensus       188 ~~~~~~~~L~~L~Ls-------~N~l~C~c~  211 (767)
                      ..+...+.|..|++.       .|++.|.|.
T Consensus       256 ~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             HHHHhCCCCcEEeccccccccCCCcccccCC
Confidence            555555667777775       666666653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=8.5e-15  Score=150.00  Aligned_cols=128  Identities=23%  Similarity=0.245  Sum_probs=104.6

Q ss_pred             ccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccC
Q psy12044         77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK  156 (767)
Q Consensus        77 L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  156 (767)
                      .+.++.+++.++.+... +  .++|+.|+|++|.|+++.+..|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++
T Consensus        21 ~~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            44566666666665432 2  26777888888888887777788888888888888888888777788888888888888


Q ss_pred             CCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       157 N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |.|+++++..|..+++|+.|+|++|+|+.+|..+..+++|+.|+|++|.+.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC
Confidence            888888888888899999999999999999988888899999999999987

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.59  E-value=1.3e-15  Score=162.26  Aligned_cols=178  Identities=20%  Similarity=0.229  Sum_probs=145.6

Q ss_pred             eEEEecCCCcccccc--CC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCc-cCcccccCCCCCCEEE
Q psy12044         31 QTVECVNKSLITVVE--GM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV-IDSKAFRGLTNLVDLD  105 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~--~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~-i~p~~f~~L~~L~~L~  105 (767)
                      +.++.++..+..++.  .+  .++|++|+|++|.+.++.+..|..  +++|+.|+|++|.+++ ..|..|..+++|++|+
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT--CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc--CcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            445555666665553  22  467888888888888888777774  8899999999999987 5678899999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCC-CCCeeeccCCccc
Q psy12044        106 FSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLD-SLEWLKLDNNKIT  184 (767)
Q Consensus       106 Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~-~L~~L~Ls~N~Lt  184 (767)
                      |++|.|+++.+..|..+++|+.|+|++|.++++.+..|..+++|+.|+|++|.|++..+..+..++ +|+.|+|++|.++
T Consensus       182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            999999999999999999999999999999999988899999999999999999999998888884 9999999999998


Q ss_pred             cccCCCC---CCCCcccccCCCCCCCchh
Q psy12044        185 TISGSNI---LPTGLHGIDLHHNPWTCDC  210 (767)
Q Consensus       185 ~ip~~~~---~~~~L~~L~Ls~N~l~C~c  210 (767)
                      .......   .....+.+.+..+.+.|..
T Consensus       262 ~~c~~~~~~~~l~~~~~~~~~~~~~~C~~  290 (306)
T 2z66_A          262 CTCEHQSFLQWIKDQRQLLVEVERMECAT  290 (306)
T ss_dssp             CSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred             cccChHHHHHHHHhhhhhhccccccccCC
Confidence            5432111   1134455667778888853

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.59  E-value=1.1e-15  Score=164.12  Aligned_cols=170  Identities=22%  Similarity=0.255  Sum_probs=109.0

Q ss_pred             EEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         33 VECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        33 v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      .+.+...+..++..+   .++|++|+|++|.|+++.+..|..  +++|+.|+|++|.|++..+  |..+++|++|+|++|
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP--FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTT--CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhC--CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            344444454444333   346788888888888877777764  7788888888888877654  777777777777777


Q ss_pred             CCCCCCCC----------------CCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhc-CCCC
Q psy12044        110 VLQTVPSD----------------TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFV-GLDS  172 (767)
Q Consensus       110 ~Lt~l~p~----------------~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~-~l~~  172 (767)
                      .|+++++.                ....+++|+.|+|++|.++++.+..|..+++|+.|+|++|.|+++.+..+. .+++
T Consensus        91 ~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  170 (317)
T 3o53_A           91 YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (317)
T ss_dssp             EEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             ccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence            76654321                011234566666666666666666666666677777777776666555543 5666


Q ss_pred             CCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        173 LEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       173 L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |+.|+|++|.|+.++... .+++|+.|+|++|.+.
T Consensus       171 L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          171 LEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             CCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCC
T ss_pred             CCEEECCCCcCccccccc-ccccCCEEECCCCcCC
Confidence            777777777766665433 3556667777776665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.59  E-value=2.1e-15  Score=164.31  Aligned_cols=151  Identities=23%  Similarity=0.293  Sum_probs=136.3

Q ss_pred             EEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCC
Q psy12044         53 VLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSG  132 (767)
Q Consensus        53 ~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~  132 (767)
                      ..+++++.++.++...+     ++|+.|+|++|.|+.+.+..|.++++|++|+|++|.|+++.+..|..+++|++|+|++
T Consensus        35 ~c~~~~~~l~~iP~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGLT-----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             EEECCSTTCSSCCTTCC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EeeCCCCCccccccccc-----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            47889999999987543     5899999999999999888999999999999999999999999999999999999999


Q ss_pred             CcCcccccCCcCCCCCccEEeccCCCccccch-hhhcCCCCCCeeeccCC-ccccccCC-CCCCCCcccccCCCCCCCc
Q psy12044        133 NPIKQIKTGAFQPLSYLVTLELSKCGIEVIED-AAFVGLDSLEWLKLDNN-KITTISGS-NILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       133 N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N-~Lt~ip~~-~~~~~~L~~L~Ls~N~l~C  208 (767)
                      |.++++++..|..+++|+.|+|++|.++.++. ..|..+++|+.|+|++| .++.+++. +..+++|+.|++++|.+..
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            99999988889999999999999999999887 67889999999999999 58887654 4567899999999998863

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.59  E-value=3.2e-15  Score=174.71  Aligned_cols=164  Identities=25%  Similarity=0.340  Sum_probs=118.5

Q ss_pred             eEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         31 QTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      +.+++++..+..++. ..+++|+.|+|++|.|+++++  +..  +++|+.|+|++|.|+++.  .|..+++|+.|+|++|
T Consensus        46 ~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~--l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTN--LKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             CCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGG--CTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTS
T ss_pred             CEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hcc--CCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCC
Confidence            345666666666653 125677888888888877766  443  777888888888777753  4777788888888888


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      .|+.+.  .|..+++|+.|+|++|.|+++  ..|..+++|+.|+|++|.|+++++  |..+++|+.|+|++|.|+.++ .
T Consensus       120 ~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~  192 (605)
T 1m9s_A          120 GISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-A  192 (605)
T ss_dssp             CCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-G
T ss_pred             CCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-H
Confidence            877753  467777888888888887777  357777788888888888877766  777778888888888887774 3


Q ss_pred             CCCCCCcccccCCCCCCC
Q psy12044        190 NILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       190 ~~~~~~L~~L~Ls~N~l~  207 (767)
                      +..+++|+.|+|++|++.
T Consensus       193 l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             GTTCTTCSEEECCSEEEE
T ss_pred             HccCCCCCEEEccCCcCc
Confidence            455677778888877765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.59  E-value=4.2e-15  Score=174.14  Aligned_cols=165  Identities=21%  Similarity=0.250  Sum_probs=138.4

Q ss_pred             CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc
Q psy12044         17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR   96 (767)
Q Consensus        17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~   96 (767)
                      +||..|.|...+ ...++|++.++..+|..++++|+.|+|++|.|+.++.      .+++|+.|+|++|+|+.+..    
T Consensus        30 ~~~~~~~c~~~~-l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~----   98 (622)
T 3g06_A           30 VVQKMRACLNNG-NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV----   98 (622)
T ss_dssp             HHHHHHHHHHHC-CCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC----
T ss_pred             cCcccccccCCC-CcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC----
Confidence            577788887643 5789999999999999999999999999999998876      16899999999999998754    


Q ss_pred             CCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCee
Q psy12044         97 GLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL  176 (767)
Q Consensus        97 ~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L  176 (767)
                      .+++|++|+|++|.|++++.    .+++|+.|+|++|.|+.++..    +++|+.|+|++|.|++++.    .+.+|+.|
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L  166 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKL  166 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEE
T ss_pred             CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEE
Confidence            77999999999999999875    568899999999999987652    4889999999999988753    35678888


Q ss_pred             eccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        177 KLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       177 ~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      +|++|.|+.++   ..+++|+.|+|++|.+.
T Consensus       167 ~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          167 WAYNNQLTSLP---MLPSGLQELSVSDNQLA  194 (622)
T ss_dssp             ECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred             ECCCCCCCCCc---ccCCCCcEEECCCCCCC
Confidence            88888888877   23467888888888776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=8e-15  Score=143.86  Aligned_cols=119  Identities=27%  Similarity=0.477  Sum_probs=89.7

Q ss_pred             CEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCC
Q psy12044        102 VDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNN  181 (767)
Q Consensus       102 ~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N  181 (767)
                      +.|++++|.|+.++... .  ++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~~iP~~~-~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-P--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-C--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCc-C--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56677777776665432 2  56777777777777777777777777777777777777777766777788888888888


Q ss_pred             ccccccCC-CCCCCCcccccCCCCCCCchhh-hhhhhhhhccCC
Q psy12044        182 KITTISGS-NILPTGLHGIDLHHNPWTCDCL-LIGLRRWLESTK  223 (767)
Q Consensus       182 ~Lt~ip~~-~~~~~~L~~L~Ls~N~l~C~c~-l~~l~~~l~~~~  223 (767)
                      +|+.++.. +..+++|+.|+|++|+|.|+|. +.|+..|+....
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~  135 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHT  135 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhcc
Confidence            88877776 4456788999999999999996 889999987653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.58  E-value=1.1e-14  Score=154.83  Aligned_cols=148  Identities=24%  Similarity=0.298  Sum_probs=133.1

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      .++|+.|++++|.|..+..  +..  +++|+.|+|++|.|+++.+  +..+++|++|+|++|.|++++  .+..+++|+.
T Consensus        45 l~~L~~L~l~~~~i~~~~~--~~~--l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~  116 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQG--IQY--LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKS  116 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGG--CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCE
T ss_pred             cCcccEEEccCCCcccChh--Hhc--CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCE
Confidence            4679999999999998854  553  8999999999999999866  999999999999999999865  3889999999


Q ss_pred             EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |+|++|.++.+.  .+..+++|+.|+|++|.|+++  ..+..+++|+.|+|++|+|+.+++ +..+++|+.|+|++|.+.
T Consensus       117 L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          117 LSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence            999999999973  588899999999999999998  468899999999999999999877 667789999999999987


Q ss_pred             c
Q psy12044        208 C  208 (767)
Q Consensus       208 C  208 (767)
                      .
T Consensus       192 ~  192 (291)
T 1h6t_A          192 D  192 (291)
T ss_dssp             B
T ss_pred             C
Confidence            4

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=6.7e-15  Score=146.91  Aligned_cols=147  Identities=20%  Similarity=0.240  Sum_probs=127.7

Q ss_pred             eeEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044         30 KQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS  107 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls  107 (767)
                      -+.+++++..+..+| .+  .++|++|++++|.++.+.  .+.  .+++|+.|+|++|.+++..+..|..+++|++|+|+
T Consensus        46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            467899998998888 44  689999999999887764  455  38999999999999999778889999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEECCCCc-CcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccc
Q psy12044        108 HNVLQTVPSDTFPDYPSLMKLTLSGNP-IKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITT  185 (767)
Q Consensus       108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~  185 (767)
                      +|.+++..+..|..+++|+.|+|++|. ++.++  .+..+++|+.|+|++|.|+++.  .+..+++|+.|++++|+|..
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            999998777889999999999999998 77775  5889999999999999999976  58899999999999999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.57  E-value=7.9e-15  Score=166.20  Aligned_cols=137  Identities=23%  Similarity=0.336  Sum_probs=113.8

Q ss_pred             CccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEecc
Q psy12044         76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELS  155 (767)
Q Consensus        76 ~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  155 (767)
                      +|+.|+|++|.|+.+.+..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.++++.+..|..+++|+.|+|+
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS  304 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence            45555666666776666678889999999999999999998899999999999999999999999999999999999999


Q ss_pred             CCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCchhhh
Q psy12044        156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLL  212 (767)
Q Consensus       156 ~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l  212 (767)
                      +|.|+++++..|..+++|+.|+|++|.+..-....+....+..+.+.++...|.+..
T Consensus       305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          305 GNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             SSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred             CCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence            999999999999999999999999999985433222223344567788899997654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=8.6e-15  Score=177.30  Aligned_cols=173  Identities=18%  Similarity=0.162  Sum_probs=148.6

Q ss_pred             eeEEEecCCCccc------------------cccCC----CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCC-
Q psy12044         30 KQTVECVNKSLIT------------------VVEGM----DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCR-   86 (767)
Q Consensus        30 ~~~v~C~~~~L~~------------------iP~~l----~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~-   86 (767)
                      -+.++.++..+..                  +|..+    .++|+.|+|++|.+.+..+..|.+  +++|+.|+|++|+ 
T Consensus       450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~--L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD--LPELQSLNIACNRG  527 (876)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG--CSSCCEEECTTCTT
T ss_pred             CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC--CCCCCEEECcCCCC
Confidence            4678888888887                  89876    489999999999999888888885  8999999999998 


Q ss_pred             CCc-cCcccccCC-------CCCCEEEccCCCCCCCCCC--CCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccC
Q psy12044         87 ISV-IDSKAFRGL-------TNLVDLDFSHNVLQTVPSD--TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK  156 (767)
Q Consensus        87 L~~-i~p~~f~~L-------~~L~~L~Ls~N~Lt~l~p~--~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  156 (767)
                      |++ .+|..|..+       ++|+.|+|++|.|+.+ |.  .|..+++|+.|+|++|.++.++  .|..+++|+.|+|++
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCS
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcC
Confidence            998 667655554       4999999999999954 45  7999999999999999999665  799999999999999


Q ss_pred             CCccccchhhhcCCCC-CCeeeccCCccccccCCCCCCC--CcccccCCCCCCCc
Q psy12044        157 CGIEVIEDAAFVGLDS-LEWLKLDNNKITTISGSNILPT--GLHGIDLHHNPWTC  208 (767)
Q Consensus       157 N~L~~i~~~~~~~l~~-L~~L~Ls~N~Lt~ip~~~~~~~--~L~~L~Ls~N~l~C  208 (767)
                      |.|+.+ +..|..+++ |+.|+|++|.|+.+|..+....  +|+.|+|++|.+..
T Consensus       605 N~l~~l-p~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          605 NQIEEI-PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             SCCSCC-CTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             Cccccc-hHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence            999954 456888998 9999999999999987665544  49999999999863

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=9.3e-15  Score=141.76  Aligned_cols=132  Identities=23%  Similarity=0.195  Sum_probs=119.0

Q ss_pred             CCCccEEEccCCCCC-ccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEE
Q psy12044         74 LVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL  152 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~-~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  152 (767)
                      .++|+.|+|++|.|+ +.+|..|..+++|+.|+|++|.|+++  ..|..+++|+.|+|++|.+++..+..+..+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            578999999999998 56677789999999999999999998  678999999999999999999777777779999999


Q ss_pred             eccCCCccccch-hhhcCCCCCCeeeccCCccccccC----CCCCCCCcccccCCCCCCC
Q psy12044        153 ELSKCGIEVIED-AAFVGLDSLEWLKLDNNKITTISG----SNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       153 ~Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~ip~----~~~~~~~L~~L~Ls~N~l~  207 (767)
                      +|++|.|++++. ..+..+++|+.|+|++|.|+.++.    .+..+++|+.|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            999999999864 678999999999999999999887    5556789999999999875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.53  E-value=4.1e-14  Score=160.13  Aligned_cols=169  Identities=25%  Similarity=0.335  Sum_probs=143.0

Q ss_pred             eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      -+.++.++..+..+++ ...++|+.|++++|.++++.  .+..  +++|+.|+|++|.+++..+  +..+++|+.|+|++
T Consensus       201 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~--l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLAS--LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA  274 (466)
T ss_dssp             CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGG--CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhhc--CCCCCEEECCCCccccchh--hhcCCCCCEEECCC
Confidence            4567887777776643 44788999999999999874  3553  8899999999999998865  88999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      |.++++++  +..+++|+.|+|++|.++++.+  +..+++|+.|+|++|.++++.+  +..+++|+.|++++|.+++++ 
T Consensus       275 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-  347 (466)
T 1o6v_A          275 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-  347 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-
T ss_pred             CccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-
Confidence            99998876  8889999999999999998876  7889999999999999999876  778999999999999999884 


Q ss_pred             CCCCCCCcccccCCCCCCCchhh
Q psy12044        189 SNILPTGLHGIDLHHNPWTCDCL  211 (767)
Q Consensus       189 ~~~~~~~L~~L~Ls~N~l~C~c~  211 (767)
                      .+..+++|+.|++++|++.....
T Consensus       348 ~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          348 SLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCGG
T ss_pred             hhccCCCCCEEeCCCCccCccch
Confidence            45567889999999999875443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.53  E-value=3.1e-14  Score=166.38  Aligned_cols=148  Identities=24%  Similarity=0.301  Sum_probs=134.0

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      +.+|+.|+|++|.|..++.  +..  |++|+.|+|++|.|+++.+  |..+++|+.|+|++|.|++++  .|..+++|+.
T Consensus        42 L~~L~~L~l~~n~i~~l~~--l~~--l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~  113 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQG--IQY--LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKS  113 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTT--GGG--CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCE
T ss_pred             CCCCCEEECcCCCCCCChH--Hcc--CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCE
Confidence            5789999999999998863  553  8999999999999999876  899999999999999999875  6899999999


Q ss_pred             EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |+|++|.|+.+.  .+..+++|+.|+|++|.|+++  ..|..+++|+.|+|++|.|+.+++ +..+++|+.|+|++|.+.
T Consensus       114 L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          114 LSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             EECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             EEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence            999999999874  488999999999999999998  468999999999999999998877 667889999999999987


Q ss_pred             c
Q psy12044        208 C  208 (767)
Q Consensus       208 C  208 (767)
                      .
T Consensus       189 ~  189 (605)
T 1m9s_A          189 D  189 (605)
T ss_dssp             B
T ss_pred             C
Confidence            4

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.52  E-value=1.3e-13  Score=156.05  Aligned_cols=160  Identities=22%  Similarity=0.220  Sum_probs=126.7

Q ss_pred             eeEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEcc
Q psy12044         30 KQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFS  107 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls  107 (767)
                      -+.+++++..+..+| .+  .++|++|+|++|.|++++   +.  .+++|+.|+|++|.|+++.   |..+++|++|+|+
T Consensus        44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~  114 (457)
T 3bz5_A           44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD  114 (457)
T ss_dssp             CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred             CCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence            467888888888876 34  578999999999998874   54  3788999999999988872   8888999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044        108 HNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS  187 (767)
Q Consensus       108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip  187 (767)
                      +|.|++++   +..+++|+.|+|++|.++++.   +..+++|+.|+|++|...+..  .+..+++|+.|+|++|+|+.++
T Consensus       115 ~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~  186 (457)
T 3bz5_A          115 TNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD  186 (457)
T ss_dssp             SSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec
Confidence            99988863   788889999999999988863   677888888888888443333  3667888888888888888876


Q ss_pred             CCCCCCCCcccccCCCCCCCc
Q psy12044        188 GSNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       188 ~~~~~~~~L~~L~Ls~N~l~C  208 (767)
                        +...++|+.|++++|.+..
T Consensus       187 --l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          187 --VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSC
T ss_pred             --cccCCCCCEEECcCCcCCe
Confidence              4556778888888887763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.51  E-value=1.1e-13  Score=156.53  Aligned_cols=167  Identities=25%  Similarity=0.307  Sum_probs=146.6

Q ss_pred             eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      -+.++.++..+..++. .-.++|+.|++++|.++++.+  +..  +++|+.|+|++|.++.+  ..+..+++|+.|+|++
T Consensus       179 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~--l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN  252 (466)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGG--CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             CCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccc--cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCC
Confidence            4678888888777654 126799999999999999876  443  88999999999999987  4588999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      |.++++.+  +..+++|+.|+|++|.++++++  +..+++|+.|+|++|.++++++  +..+++|+.|+|++|+++++++
T Consensus       253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            99999876  8899999999999999999876  8889999999999999999876  7889999999999999998876


Q ss_pred             CCCCCCCcccccCCCCCCCch
Q psy12044        189 SNILPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       189 ~~~~~~~L~~L~Ls~N~l~C~  209 (767)
                       +..+++|+.|++++|.+...
T Consensus       327 -~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          327 -VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCCC
T ss_pred             -hccCccCCEeECCCCccCCc
Confidence             45678999999999999864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.51  E-value=1.1e-14  Score=152.64  Aligned_cols=148  Identities=23%  Similarity=0.297  Sum_probs=130.1

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      ..++..+++++|.++++.  .+..  +++|+.|++++|.|+.+.  .+..+++|++|+|++|.|+++++  |..+++|+.
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~--l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKE--LSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHH--HTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHhcCCCccccc--chhh--cCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            456778899999999887  3443  789999999999999875  68999999999999999999987  899999999


Q ss_pred             EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |+|++|.+++++..  .. ++|+.|+|++|.|+++.  .+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.+.
T Consensus        90 L~L~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           90 LSVNRNRLKNLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             EECCSSCCSCCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCC
T ss_pred             EECCCCccCCcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCc
Confidence            99999999998753  33 89999999999999974  4889999999999999999986 4556789999999999997


Q ss_pred             ch
Q psy12044        208 CD  209 (767)
Q Consensus       208 C~  209 (767)
                      ..
T Consensus       164 ~~  165 (263)
T 1xeu_A          164 NT  165 (263)
T ss_dssp             BC
T ss_pred             ch
Confidence            53

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=1.5e-14  Score=137.41  Aligned_cols=127  Identities=21%  Similarity=0.274  Sum_probs=65.1

Q ss_pred             CCccEEEeeCCCCC-CCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         49 PNTQVLDYTGNNLK-TLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~-~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      ++++.|++++|.++ +..+..+..  +++|+.|+|++|.|+++  ..|..+++|++|+|++|.|++..|..+..+++|+.
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDE--FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTT--CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhh--cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            44555555555555 222223332  45555555555555554  34555555555555555555544444444555555


Q ss_pred             EECCCCcCcccc-cCCcCCCCCccEEeccCCCccccch---hhhcCCCCCCeeecc
Q psy12044        128 LTLSGNPIKQIK-TGAFQPLSYLVTLELSKCGIEVIED---AAFVGLDSLEWLKLD  179 (767)
Q Consensus       128 L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~L~~i~~---~~~~~l~~L~~L~Ls  179 (767)
                      |+|++|.+++++ +..+..+++|+.|+|++|.++++++   ..+..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555555555542 2345555555555555555555544   345555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.50  E-value=1.9e-13  Score=147.95  Aligned_cols=167  Identities=20%  Similarity=0.282  Sum_probs=133.1

Q ss_pred             eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      -+.+++.+..+..++. .-.++|++|+|++|.|+.+++  +.  .+++|+.|+|++|.++.+  ..|.++++|++|+|++
T Consensus        46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~--~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~  119 (347)
T 4fmz_A           46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LS--NLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNE  119 (347)
T ss_dssp             CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTT
T ss_pred             ccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hh--cCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcC
Confidence            4678888888877764 226789999999999988876  55  388999999999988886  3588899999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      |.++.+++  +..+++|+.|++++|......+ .+..+++|+.|++++|.+..+.+  +..+++|+.|++++|.++.++.
T Consensus       120 n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~  194 (347)
T 4fmz_A          120 DNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP  194 (347)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG
T ss_pred             CcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc
Confidence            99888765  7888899999999885544443 37788888888888888888765  7788888888888888887776


Q ss_pred             CCCCCCCcccccCCCCCCCc
Q psy12044        189 SNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       189 ~~~~~~~L~~L~Ls~N~l~C  208 (767)
                       +..+.+|+.|++++|.+..
T Consensus       195 -~~~l~~L~~L~l~~n~l~~  213 (347)
T 4fmz_A          195 -LASLTSLHYFTAYVNQITD  213 (347)
T ss_dssp             -GGGCTTCCEEECCSSCCCC
T ss_pred             -ccCCCccceeecccCCCCC
Confidence             4456778888888887764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=1.5e-13  Score=134.45  Aligned_cols=110  Identities=25%  Similarity=0.384  Sum_probs=97.8

Q ss_pred             ccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccC
Q psy12044         77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK  156 (767)
Q Consensus        77 L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  156 (767)
                      .+.+++++|.++.+...   ..++|+.|+|++|.|+++++..|..+++|+.|+|++|.|+++++..|..+++|+.|+|++
T Consensus         9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            45677777777776432   236899999999999999988899999999999999999999998899999999999999


Q ss_pred             CCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       157 N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      |.|+++++..|..+++|+.|+|++|.|+.++..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  118 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG  118 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence            999999998899999999999999999988764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=2.7e-14  Score=135.65  Aligned_cols=128  Identities=20%  Similarity=0.142  Sum_probs=113.2

Q ss_pred             CCCccEEEccCCCCC-ccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEE
Q psy12044         74 LVNLQKIYLSRCRIS-VIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL  152 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~-~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  152 (767)
                      .++|+.|++++|.++ +..|..|..+++|+.|+|++|.|+++  ..|..+++|+.|+|++|.+++..+..+..+++|+.|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            468999999999999 66677889999999999999999998  678999999999999999999777777789999999


Q ss_pred             eccCCCccccc-hhhhcCCCCCCeeeccCCccccccC----CCCCCCCcccccCCC
Q psy12044        153 ELSKCGIEVIE-DAAFVGLDSLEWLKLDNNKITTISG----SNILPTGLHGIDLHH  203 (767)
Q Consensus       153 ~Ls~N~L~~i~-~~~~~~l~~L~~L~Ls~N~Lt~ip~----~~~~~~~L~~L~Ls~  203 (767)
                      +|++|.|++++ +..+..+++|+.|+|++|.++.++.    .+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999974 4678999999999999999998876    344568899888864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.49  E-value=3e-13  Score=153.03  Aligned_cols=160  Identities=20%  Similarity=0.195  Sum_probs=115.3

Q ss_pred             eeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      -+.+++++..+..+|-.-.++|++|+|++|.|++++   +.  .+++|+.|+|++|.|+++ +  |..+++|++|+|++|
T Consensus        66 L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---~~--~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           66 LTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VT--PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARN  137 (457)
T ss_dssp             CSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CT--TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTS
T ss_pred             CCEEEccCCcCCeEccccCCCCCEEECcCCCCceee---cC--CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCC
Confidence            467888888888887555788999999999999874   55  388999999999999986 3  888899999999999


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      .|+++.   +..+++|+.|++++|...+..  .+..+++|+.|+|++|.|++++   +..+++|+.|++++|+|+.++  
T Consensus       138 ~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--  207 (457)
T 3bz5_A          138 TLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--  207 (457)
T ss_dssp             CCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--
T ss_pred             ccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec--
Confidence            988863   666777777777777433322  2556666777777777666653   555666666666666666552  


Q ss_pred             CCCCCCcccccCCCCCCC
Q psy12044        190 NILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       190 ~~~~~~L~~L~Ls~N~l~  207 (767)
                      +..+++|+.|++++|.+.
T Consensus       208 l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             CTTCTTCSEEECCSSCCS
T ss_pred             cccCCCCCEEECcCCccc
Confidence            334456666666666655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=4.6e-14  Score=138.24  Aligned_cols=130  Identities=18%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL  128 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L  128 (767)
                      .+++.|+|++|.|+.++.  +.. ..++|+.|+|++|.|+++  ..|..+++|++|+|++|.|+++++..|..+++|+.|
T Consensus        19 ~~L~~L~l~~n~l~~i~~--~~~-~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIEN--LGA-TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSCCCSCCC--GGG-GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCCCchhHH--hhh-cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            345555555555554421  111 022455555555555544  234445555555555555554444433444455555


Q ss_pred             ECCCCcCccccc-CCcCCCCCccEEeccCCCccccchh---hhcCCCCCCeeeccCCcc
Q psy12044        129 TLSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIEDA---AFVGLDSLEWLKLDNNKI  183 (767)
Q Consensus       129 ~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~~---~~~~l~~L~~L~Ls~N~L  183 (767)
                      +|++|.|+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|+++.|.+
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            555554444332 2344444444444444444443322   244444444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.47  E-value=2.2e-13  Score=148.36  Aligned_cols=175  Identities=22%  Similarity=0.257  Sum_probs=147.4

Q ss_pred             eeEEEecCCCccccccCC---CCCccEEEeeCCCCCC-CCchhhhccCCCCccE-EEccCCCCCccCcccccCCCCCCEE
Q psy12044         30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKT-LHNEKFQKMGLVNLQK-IYLSRCRISVIDSKAFRGLTNLVDL  104 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~-l~~~~f~~~~L~~L~~-L~Ls~N~L~~i~p~~f~~L~~L~~L  104 (767)
                      -+.++.++..+..||.+.   .++|++|+|++|.+.+ ++...|.+  +++|.. +.+..|+|+.+.+.+|.++++|++|
T Consensus        32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~--L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN--LPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS--CTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc--chhhhhhhcccCCcccccCchhhhhccccccc
Confidence            467889999999999864   5789999999999855 66677774  778765 6677899999999999999999999


Q ss_pred             EccCCCCCCCCCCCCCCCCCCcEEECCC-CcCcccccCCcCCCC-CccEEeccCCCccccchhhhcCCCCCCeeecc-CC
Q psy12044        105 DFSHNVLQTVPSDTFPDYPSLMKLTLSG-NPIKQIKTGAFQPLS-YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLD-NN  181 (767)
Q Consensus       105 ~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~-~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls-~N  181 (767)
                      ++++|.|+.+++..+....++..|++.+ |.+..++...|..+. .|+.|+|++|.|+.+++..|. ..+|+.|+++ +|
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n  188 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNN  188 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCC
Confidence            9999999999988888888888898865 688888888888775 588899999999998877664 5678899987 57


Q ss_pred             ccccccCCCC-CCCCcccccCCCCCCC
Q psy12044        182 KITTISGSNI-LPTGLHGIDLHHNPWT  207 (767)
Q Consensus       182 ~Lt~ip~~~~-~~~~L~~L~Ls~N~l~  207 (767)
                      .++.|+...+ .+++|+.|+|++|.+.
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcC
Confidence            8899987764 5688999999999886

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.46  E-value=5.1e-13  Score=156.47  Aligned_cols=78  Identities=23%  Similarity=0.207  Sum_probs=47.2

Q ss_pred             CCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCC
Q psy12044        123 PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLH  202 (767)
Q Consensus       123 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls  202 (767)
                      ++|+.|+|++|.|++++    ..+++|+.|+|++|.|+.++.    .+++|+.|+|++|+|+.||..+..+++|+.|+|+
T Consensus       221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence            44555555555555543    234556666666666665543    3556666666666666666655556666677777


Q ss_pred             CCCCCc
Q psy12044        203 HNPWTC  208 (767)
Q Consensus       203 ~N~l~C  208 (767)
                      +|++.+
T Consensus       293 ~N~l~~  298 (622)
T 3g06_A          293 GNPLSE  298 (622)
T ss_dssp             SCCCCH
T ss_pred             CCCCCC
Confidence            777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.46  E-value=2.5e-13  Score=135.15  Aligned_cols=109  Identities=27%  Similarity=0.384  Sum_probs=94.0

Q ss_pred             cEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCC-CCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccC
Q psy12044         78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSD-TFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSK  156 (767)
Q Consensus        78 ~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~-~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  156 (767)
                      +.|++++|.|+.+.. .+.  .+|++|+|++|.|+++++. .|..+++|+.|+|++|.|+++.+..|..+++|+.|+|++
T Consensus        11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            567777777766543 232  2889999999999998875 588999999999999999999999999999999999999


Q ss_pred             CCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        157 CGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       157 N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      |.|+++++..|..+++|+.|+|++|+|+.+.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence            999999998899999999999999999987654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=7.8e-14  Score=136.56  Aligned_cols=131  Identities=24%  Similarity=0.293  Sum_probs=115.2

Q ss_pred             CCCCccEEEccCCCCCccCcccccCCC-CCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccE
Q psy12044         73 GLVNLQKIYLSRCRISVIDSKAFRGLT-NLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVT  151 (767)
Q Consensus        73 ~L~~L~~L~Ls~N~L~~i~p~~f~~L~-~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  151 (767)
                      .+.+|+.|+|++|.|+.+ +. +..+. +|+.|+|++|.|+++  ..|..+++|+.|+|++|.|+++++..|..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            378999999999999987 44 45554 999999999999998  57899999999999999999998777789999999


Q ss_pred             EeccCCCccccch-hhhcCCCCCCeeeccCCccccccCC----CCCCCCcccccCCCCCCC
Q psy12044        152 LELSKCGIEVIED-AAFVGLDSLEWLKLDNNKITTISGS----NILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       152 L~Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~ip~~----~~~~~~L~~L~Ls~N~l~  207 (767)
                      |+|++|.|+.++. ..+..+++|+.|+|++|.++.++..    +..+++|+.|++++|...
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999988765 4688999999999999999988874    556789999999999865

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.43  E-value=1.3e-12  Score=147.68  Aligned_cols=156  Identities=19%  Similarity=0.223  Sum_probs=110.0

Q ss_pred             eeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      -+.++|++.++..+|. ++++++.|+|++|.+++++..      +.+|+.|++++|.++++..  +  .++|++|+|++|
T Consensus        73 l~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~------~~~L~~L~l~~n~l~~l~~--~--~~~L~~L~L~~n  141 (454)
T 1jl5_A           73 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL------PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNN  141 (454)
T ss_dssp             CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC------CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSS
T ss_pred             CCEEEecCCccccCCC-CcCCCCEEEccCCcCCccccc------cCCCcEEECCCCccCcccC--C--CCCCCEEECcCC
Confidence            3679999999988887 678899999999999986531      3577777777777776532  1  157777777777


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      .+++++  .|..+++|+.|++++|.+++++..    ..+|+.|+|++|.+++++  .|..+++|+.|++++|++++++..
T Consensus       142 ~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~  213 (454)
T 1jl5_A          142 QLEKLP--ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL  213 (454)
T ss_dssp             CCSSCC--CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC
T ss_pred             CCCCCc--ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC
Confidence            777754  377777777777777777765431    246777777777777754  366777777777777777766543


Q ss_pred             CCCCCCcccccCCCCCCC
Q psy12044        190 NILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       190 ~~~~~~L~~L~Ls~N~l~  207 (767)
                      .   .+|+.|++++|.+.
T Consensus       214 ~---~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          214 P---LSLESIVAGNNILE  228 (454)
T ss_dssp             C---TTCCEEECCSSCCS
T ss_pred             c---CcccEEECcCCcCC
Confidence            2   46677777777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=7.5e-13  Score=131.94  Aligned_cols=108  Identities=26%  Similarity=0.395  Sum_probs=92.3

Q ss_pred             cEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCC
Q psy12044         78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC  157 (767)
Q Consensus        78 ~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  157 (767)
                      +.+++++|.|+.+... +  ..+|++|+|++|.|+.++ ..|..+++|+.|+|++|.|+++.+..|.++++|+.|+|++|
T Consensus        13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            3566666666655332 2  247888888888888665 67889999999999999999999999999999999999999


Q ss_pred             CccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        158 GIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       158 ~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      .|+++++..|..+++|+.|+|++|.|+.++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~  120 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG  120 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence            99999999999999999999999999988764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.41  E-value=2.2e-14  Score=158.10  Aligned_cols=157  Identities=17%  Similarity=0.176  Sum_probs=73.4

Q ss_pred             CCccEEEeeCCCCCCC----CchhhhccCCCCccEEEccCCCCCccCccccc----CC---------CCCCEEEccCCCC
Q psy12044         49 PNTQVLDYTGNNLKTL----HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR----GL---------TNLVDLDFSHNVL  111 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l----~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~----~L---------~~L~~L~Ls~N~L  111 (767)
                      ++|++|+|++|.|+..    .+..+..  +++|+.|+|++|.|+...+..|.    .+         ++|++|+|++|.|
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSK--HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHH--CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHh--CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            5566666666666552    2223332  45566666666555433222222    22         5555555555555


Q ss_pred             CC-CCC---CCCCCCCCCcEEECCCCcCc--c---cccCCcCCCCCccEEeccCCCcc----ccchhhhcCCCCCCeeec
Q psy12044        112 QT-VPS---DTFPDYPSLMKLTLSGNPIK--Q---IKTGAFQPLSYLVTLELSKCGIE----VIEDAAFVGLDSLEWLKL  178 (767)
Q Consensus       112 t~-l~p---~~f~~l~~L~~L~Ls~N~l~--~---l~~~~~~~l~~L~~L~Ls~N~L~----~i~~~~~~~l~~L~~L~L  178 (767)
                      +. ..+   ..|..+++|+.|+|++|.|+  +   +.+..+..+++|+.|+|++|.|+    ...+..+..+++|+.|+|
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence            41 111   12334455555555555554  1   22224444555555555555553    223334445555555555


Q ss_pred             cCCccccc-----cCCC--CCCCCcccccCCCCCCC
Q psy12044        179 DNNKITTI-----SGSN--ILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       179 s~N~Lt~i-----p~~~--~~~~~L~~L~Ls~N~l~  207 (767)
                      ++|.|+..     +..+  ...++|+.|+|++|.+.
T Consensus       252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            55555432     2211  11344555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.41  E-value=2.3e-12  Score=145.65  Aligned_cols=159  Identities=20%  Similarity=0.201  Sum_probs=120.9

Q ss_pred             eeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      -+.++.++..+..+|.. +.+|+.|++++|.+++++..      .++|+.|+|++|.++++ | .|.++++|++|++++|
T Consensus        93 L~~L~l~~n~l~~lp~~-~~~L~~L~l~~n~l~~l~~~------~~~L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           93 LESLVASCNSLTELPEL-PQSLKSLLVDNNNLKALSDL------PPLLEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             CSEEECCSSCCSSCCCC-CTTCCEEECCSSCCSCCCSC------CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSS
T ss_pred             CCEEEccCCcCCccccc-cCCCcEEECCCCccCcccCC------CCCCCEEECcCCCCCCC-c-ccCCCCCCCEEECCCC
Confidence            46788888888888764 47889999999988876531      25788889998888885 4 4888888999999888


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      .+++++. .   ..+|+.|+|++|.+++++  .|..+++|+.|++++|.+++++..    ..+|+.|++++|.++.+|. 
T Consensus       164 ~l~~lp~-~---~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~-  232 (454)
T 1jl5_A          164 SLKKLPD-L---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE-  232 (454)
T ss_dssp             CCSCCCC-C---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCC-
T ss_pred             cCcccCC-C---cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccc-
Confidence            8887653 2   257888888888888864  478888888888888888875431    2577888888888877773 


Q ss_pred             CCCCCCcccccCCCCCCCc
Q psy12044        190 NILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       190 ~~~~~~L~~L~Ls~N~l~C  208 (767)
                      +..+++|+.|++++|.+..
T Consensus       233 ~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSS
T ss_pred             cCCCCCCCEEECCCCcCCc
Confidence            5566777888888877763

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.38  E-value=6.6e-13  Score=123.91  Aligned_cols=55  Identities=38%  Similarity=0.709  Sum_probs=47.1

Q ss_pred             ccCCCCCCCchhhhhhhhhhhccCCCC-CccCCCCCCCCCCCCCcccccccccccC
Q psy12044        199 IDLHHNPWTCDCLLIGLRRWLESTKTP-MAIDPICSVPPRLSSVTIKQLSIDELAC  253 (767)
Q Consensus       199 L~Ls~N~l~C~c~l~~l~~~l~~~~~~-~~~~~~C~~p~~l~g~~i~~l~~~~l~C  253 (767)
                      |+|++|+|.|||.+.|+..|+...... ......|..|..++|..+.++...++.|
T Consensus        60 L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~l~c  115 (130)
T 3rfe_A           60 AHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELRA  115 (130)
T ss_dssp             EECCSSCCBCSGGGHHHHHHHHTSSCSGGGTTCBCCBSTTTTTCBGGGCCHHHHHH
T ss_pred             EEecCCCeeccCccHHHHHHHHhCcccccccCcEeCcChHHcCCCcccCCHHHhhC
Confidence            378899999999999999999876532 2467899999999999999999888875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.38  E-value=2e-13  Score=163.08  Aligned_cols=117  Identities=16%  Similarity=0.124  Sum_probs=74.4

Q ss_pred             chhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCC
Q psy12044         66 NEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQP  145 (767)
Q Consensus        66 ~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  145 (767)
                      +..|.  .+.+|+.|+|++|.|..+.+. +.++++|++|+|++|.|+.+ |..|..|++|+.|+|++|.|+.+ |..|..
T Consensus       217 ~~~~~--~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~  291 (727)
T 4b8c_D          217 KDSKY--DDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSL-PAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSC-CSSGGG
T ss_pred             hhhhc--cCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCcc-ChhhcC
Confidence            44444  266777777777777755433 44677777777777777743 35566777777777777777754 445667


Q ss_pred             CCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        146 LSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       146 l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      +++|+.|+|++|.|+.++. .|..+++|+.|+|++|.|+++++
T Consensus       292 l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             GTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHH
T ss_pred             CCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCCh
Confidence            7777777777777765544 36777777777777777765433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.38  E-value=4e-13  Score=160.53  Aligned_cols=157  Identities=18%  Similarity=0.192  Sum_probs=100.0

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCC--ccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCc
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVN--LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLM  126 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~--L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~  126 (767)
                      +.++.|+|.+|.+..+....+..+.|.+  |..+++..|.+. +.+..|..+.+|+.|+|++|.|..+++. +..+++|+
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~  250 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGG-GGGCCSCS
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCC
Confidence            4578899999998876554443211111  222333444444 4578899999999999999999977755 44899999


Q ss_pred             EEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCC
Q psy12044        127 KLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPW  206 (767)
Q Consensus       127 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l  206 (767)
                      .|+|++|.|+.++ ..|..+++|+.|+|++|.|+.+ |..|..+.+|+.|+|++|.|+.||..+..+.+|+.|+|++|+|
T Consensus       251 ~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          251 RLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             EEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence            9999999999664 5789999999999999999966 5679999999999999999999999888889999999999999


Q ss_pred             Cch
Q psy12044        207 TCD  209 (767)
Q Consensus       207 ~C~  209 (767)
                      ...
T Consensus       329 ~~~  331 (727)
T 4b8c_D          329 EKQ  331 (727)
T ss_dssp             CSH
T ss_pred             CCC
Confidence            854

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.36  E-value=1.1e-13  Score=151.34  Aligned_cols=158  Identities=18%  Similarity=0.247  Sum_probs=93.1

Q ss_pred             CCCccEEEeeCCCCCCCCc----hhhhccCCC-CccEEEccCCCCCccCcccccCC-----CCCCEEEccCCCCCCCCCC
Q psy12044         48 DPNTQVLDYTGNNLKTLHN----EKFQKMGLV-NLQKIYLSRCRISVIDSKAFRGL-----TNLVDLDFSHNVLQTVPSD  117 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~----~~f~~~~L~-~L~~L~Ls~N~L~~i~p~~f~~L-----~~L~~L~Ls~N~Lt~l~p~  117 (767)
                      +.+|++|+|++|.|+....    ..|..  ++ +|+.|+|++|.|+...+..|..+     ++|++|+|++|.|+...+.
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHT--CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHh--CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            4457777777777776665    44442  55 67777777777776665555554     6777777777776665544


Q ss_pred             CC----CCC-CCCcEEECCCCcCcccccCCc----CC-CCCccEEeccCCCccccch----hhhcCCC-CCCeeeccCCc
Q psy12044        118 TF----PDY-PSLMKLTLSGNPIKQIKTGAF----QP-LSYLVTLELSKCGIEVIED----AAFVGLD-SLEWLKLDNNK  182 (767)
Q Consensus       118 ~f----~~l-~~L~~L~Ls~N~l~~l~~~~~----~~-l~~L~~L~Ls~N~L~~i~~----~~~~~l~-~L~~L~Ls~N~  182 (767)
                      .+    ..+ ++|+.|+|++|.|+......+    .. ..+|+.|+|++|.|+....    ..+..++ +|+.|+|++|+
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence            32    223 567777777777666554332    22 2467777777777664332    2233444 67777777776


Q ss_pred             cccccCC-----CCCC-CCcccccCCCCCCC
Q psy12044        183 ITTISGS-----NILP-TGLHGIDLHHNPWT  207 (767)
Q Consensus       183 Lt~ip~~-----~~~~-~~L~~L~Ls~N~l~  207 (767)
                      |+.....     +... .+|+.|+|++|.+.
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            6654321     1112 36667777777665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=1.1e-13  Score=149.12  Aligned_cols=174  Identities=19%  Similarity=0.183  Sum_probs=125.4

Q ss_pred             eeEEEecCCCccc--cccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc-CcccccCCCCCCEEEc
Q psy12044         30 KQTVECVNKSLIT--VVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI-DSKAFRGLTNLVDLDF  106 (767)
Q Consensus        30 ~~~v~C~~~~L~~--iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i-~p~~f~~L~~L~~L~L  106 (767)
                      ...++.++..+..  +..-+.++++.|++++|.+.+..+..+.   +++|+.|+|++|.++.. .+..+..+++|++|+|
T Consensus        49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~---~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS---PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCC---CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             heeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhcc---CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            3456666655431  0011136788888888888887776553   78888888888888765 6677888888888888


Q ss_pred             cCCCCCCCCCCCCCCCCCCcEEECCCC-cCccc-ccCCcCCCCCccEEeccCC-Ccccc-chhhhcCCC-CCCeeeccCC
Q psy12044        107 SHNVLQTVPSDTFPDYPSLMKLTLSGN-PIKQI-KTGAFQPLSYLVTLELSKC-GIEVI-EDAAFVGLD-SLEWLKLDNN  181 (767)
Q Consensus       107 s~N~Lt~l~p~~f~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~~L~Ls~N-~L~~i-~~~~~~~l~-~L~~L~Ls~N  181 (767)
                      ++|.+++..+..|..+++|+.|+|++| .+++. .+..+..+++|+.|+|++| .+++. .+..+..++ +|+.|+|++|
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            888887766667778888888888888 67652 3444667888888888888 88764 355677788 8888888888


Q ss_pred             c--cc--cccCCCCCCCCcccccCCCCCC
Q psy12044        182 K--IT--TISGSNILPTGLHGIDLHHNPW  206 (767)
Q Consensus       182 ~--Lt--~ip~~~~~~~~L~~L~Ls~N~l  206 (767)
                      .  ++  .++..+..+++|+.|+|++|.+
T Consensus       206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  234 (336)
T 2ast_B          206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVM  234 (336)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             cccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence            4  43  4444444567888888888873

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.33  E-value=1.8e-13  Score=149.76  Aligned_cols=179  Identities=17%  Similarity=0.247  Sum_probs=134.9

Q ss_pred             eeEEEecCCCcccccc-----CC--CC-CccEEEeeCCCCCCCCchhhhcc--C-CCCccEEEccCCCCCccCcccc---
Q psy12044         30 KQTVECVNKSLITVVE-----GM--DP-NTQVLDYTGNNLKTLHNEKFQKM--G-LVNLQKIYLSRCRISVIDSKAF---   95 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~-----~l--~~-~L~~L~Ls~N~L~~l~~~~f~~~--~-L~~L~~L~Ls~N~L~~i~p~~f---   95 (767)
                      -+.++.++..+..++.     .+  .+ +|++|+|++|.|+......+...  . .++|+.|+|++|.|+...+..+   
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            3568888888877764     22  33 89999999999998877776641  1 2789999999999998877644   


Q ss_pred             -cCC-CCCCEEEccCCCCCCCCCCCC----CC-CCCCcEEECCCCcCcccccC----CcCCCC-CccEEeccCCCccccc
Q psy12044         96 -RGL-TNLVDLDFSHNVLQTVPSDTF----PD-YPSLMKLTLSGNPIKQIKTG----AFQPLS-YLVTLELSKCGIEVIE  163 (767)
Q Consensus        96 -~~L-~~L~~L~Ls~N~Lt~l~p~~f----~~-l~~L~~L~Ls~N~l~~l~~~----~~~~l~-~L~~L~Ls~N~L~~i~  163 (767)
                       ..+ ++|++|+|++|.|+...+..+    .. ..+|+.|+|++|.|+.....    .+..++ +|+.|+|++|.|++..
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence             444 899999999999988776543    33 36899999999999854432    234444 8999999999998887


Q ss_pred             hhhhc----CC-CCCCeeeccCCcccc-----ccCCCCC-CCCcccccCCCCCCCc
Q psy12044        164 DAAFV----GL-DSLEWLKLDNNKITT-----ISGSNIL-PTGLHGIDLHHNPWTC  208 (767)
Q Consensus       164 ~~~~~----~l-~~L~~L~Ls~N~Lt~-----ip~~~~~-~~~L~~L~Ls~N~l~C  208 (767)
                      +..+.    .+ .+|+.|+|++|.|+.     ++..+.. .++|+.|+|++|.+..
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            65444    44 599999999999987     4443333 3589999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.30  E-value=4.8e-12  Score=136.50  Aligned_cols=155  Identities=23%  Similarity=0.320  Sum_probs=106.1

Q ss_pred             CCCccEEEeeCCCCC--------------------CCCchhhhccC--------CCCccEEEccCCCCCccCcccccCCC
Q psy12044         48 DPNTQVLDYTGNNLK--------------------TLHNEKFQKMG--------LVNLQKIYLSRCRISVIDSKAFRGLT   99 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~--------------------~l~~~~f~~~~--------L~~L~~L~Ls~N~L~~i~p~~f~~L~   99 (767)
                      .++|+.|+|++|+|.                    .++...|.  +        +.+|+.|+|.+ .++.+...+|.++.
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~  124 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD  124 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence            567888888888888                    34445554  5        78888888888 88888888888889


Q ss_pred             CCCEEEccCCCCCCCCCCCCCC----------------------------------------------------------
Q psy12044        100 NLVDLDFSHNVLQTVPSDTFPD----------------------------------------------------------  121 (767)
Q Consensus       100 ~L~~L~Ls~N~Lt~l~p~~f~~----------------------------------------------------------  121 (767)
                      +|+.|+|.+|.++.+.+.+|..                                                          
T Consensus       125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~  204 (329)
T 3sb4_A          125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI  204 (329)
T ss_dssp             TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred             ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence            9999999888876665555544                                                          


Q ss_pred             --------------------CCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCC-eeeccC
Q psy12044        122 --------------------YPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLE-WLKLDN  180 (767)
Q Consensus       122 --------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~-~L~Ls~  180 (767)
                                          +++|+.|+|++|.++.++..+|.++.+|+.|+|.+| ++.+...+|.++.+|+ .|+|.+
T Consensus       205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence                                345666666666666666666666666666666665 6666666666666666 666666


Q ss_pred             CccccccCCCC-CCCCcccccCCCCCCC
Q psy12044        181 NKITTISGSNI-LPTGLHGIDLHHNPWT  207 (767)
Q Consensus       181 N~Lt~ip~~~~-~~~~L~~L~Ls~N~l~  207 (767)
                       +++.|+...| .+.+|+.|++.+|.+.
T Consensus       284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          284 -SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             -TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             -cceEEchhhhhCCccCCEEEeCCCccC
Confidence             5666655444 3456666666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.29  E-value=3.2e-13  Score=148.81  Aligned_cols=176  Identities=15%  Similarity=0.150  Sum_probs=122.9

Q ss_pred             eEEEecCCCccc-----cccCC--CCCccEEEeeCCCCCCCC---chhh-------hccCCCCccEEEccCCCCCc----
Q psy12044         31 QTVECVNKSLIT-----VVEGM--DPNTQVLDYTGNNLKTLH---NEKF-------QKMGLVNLQKIYLSRCRISV----   89 (767)
Q Consensus        31 ~~v~C~~~~L~~-----iP~~l--~~~L~~L~Ls~N~L~~l~---~~~f-------~~~~L~~L~~L~Ls~N~L~~----   89 (767)
                      +.++.++..+..     ++..+  .++|+.|+|++|.+..+.   +..+       .  .+++|+.|+|++|.|+.    
T Consensus        35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT--TCTTCCEEECCSCCCCTTTHH
T ss_pred             cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh--hCCcccEEECCCCcCCHHHHH
Confidence            456666666553     22222  568888999887655432   3232       3  37888899999988887    


Q ss_pred             cCcccccCCCCCCEEEccCCCCCCCCCCCCCC----C---------CCCcEEECCCCcCccc-cc---CCcCCCCCccEE
Q psy12044         90 IDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPD----Y---------PSLMKLTLSGNPIKQI-KT---GAFQPLSYLVTL  152 (767)
Q Consensus        90 i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~----l---------~~L~~L~Ls~N~l~~l-~~---~~~~~l~~L~~L  152 (767)
                      ..+..|..+++|++|+|++|.|+...+..+..    +         ++|+.|+|++|.++.. .+   ..+..+++|+.|
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  192 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  192 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence            35667788888999999988886443333332    2         7888999999888722 22   345667888999


Q ss_pred             eccCCCcc--c---cchhhhcCCCCCCeeeccCCcc-----ccccCCCCCCCCcccccCCCCCCCc
Q psy12044        153 ELSKCGIE--V---IEDAAFVGLDSLEWLKLDNNKI-----TTISGSNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       153 ~Ls~N~L~--~---i~~~~~~~l~~L~~L~Ls~N~L-----t~ip~~~~~~~~L~~L~Ls~N~l~C  208 (767)
                      +|++|.|+  +   +.+..+..+++|+.|+|++|.|     ..++..+...++|+.|+|++|.+..
T Consensus       193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence            99988887  3   3343677888899999999888     3455555566788889999888763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=6.3e-12  Score=145.85  Aligned_cols=148  Identities=20%  Similarity=0.258  Sum_probs=119.0

Q ss_pred             CCccEEE-eeCCCCCCCCchhhh-----ccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCC
Q psy12044         49 PNTQVLD-YTGNNLKTLHNEKFQ-----KMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDY  122 (767)
Q Consensus        49 ~~L~~L~-Ls~N~L~~l~~~~f~-----~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l  122 (767)
                      ++|+.|+ ++.|.+..+....+.     ......|+.|+|++|.|+++ |. |..+++|+.|+|++|.|+.+ |..|..+
T Consensus       409 ~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l  485 (567)
T 1dce_A          409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRAL-PPALAAL  485 (567)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCC-CGGGGGC
T ss_pred             HhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccccc-chhhhcC
Confidence            3567777 566655443322111     11123689999999999997 44 99999999999999999966 4689999


Q ss_pred             CCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccc-hhhhcCCCCCCeeeccCCccccccCCCCC----CCCcc
Q psy12044        123 PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE-DAAFVGLDSLEWLKLDNNKITTISGSNIL----PTGLH  197 (767)
Q Consensus       123 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~-~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~----~~~L~  197 (767)
                      ++|+.|+|++|.|++++  .|..+++|+.|+|++|.|+++. |..|..+++|+.|+|++|.|+++++....    +++|+
T Consensus       486 ~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          486 RCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             TTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence            99999999999999975  6999999999999999999997 88899999999999999999998876532    46777


Q ss_pred             cccC
Q psy12044        198 GIDL  201 (767)
Q Consensus       198 ~L~L  201 (767)
                      .|++
T Consensus       564 ~L~l  567 (567)
T 1dce_A          564 SILT  567 (567)
T ss_dssp             EEEC
T ss_pred             ccCC
Confidence            7754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=6.1e-12  Score=145.96  Aligned_cols=166  Identities=17%  Similarity=0.184  Sum_probs=125.1

Q ss_pred             CCCccccccCC--CCCccEEEeeCCC-------------CCCCCchhhhccCCCCccEEE-ccCCCCCccCcc-----cc
Q psy12044         37 NKSLITVVEGM--DPNTQVLDYTGNN-------------LKTLHNEKFQKMGLVNLQKIY-LSRCRISVIDSK-----AF   95 (767)
Q Consensus        37 ~~~L~~iP~~l--~~~L~~L~Ls~N~-------------L~~l~~~~f~~~~L~~L~~L~-Ls~N~L~~i~p~-----~f   95 (767)
                      ++.+..+|..+  .++|+.|++++|.             +.+..+..+..  |.+|+.|+ ++.|.+..+..-     .+
T Consensus       358 ~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~--l~~L~~L~~l~~n~~~~L~~l~l~~n~i  435 (567)
T 1dce_A          358 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY--FSTLKAVDPMRAAYLDDLRSKFLLENSV  435 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH--HHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH--HHhcccCcchhhcccchhhhhhhhcccc
Confidence            34445556544  4566666665553             44555555553  67777777 454433322100     01


Q ss_pred             cC--CCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCC
Q psy12044         96 RG--LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSL  173 (767)
Q Consensus        96 ~~--L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L  173 (767)
                      ..  ...|+.|+|++|.|++++ . |..+++|+.|+|++|.|+.++ ..|..+++|+.|+|++|.|++++  .|..+++|
T Consensus       436 ~~l~~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L  510 (567)
T 1dce_A          436 LKMEYADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD--GVANLPRL  510 (567)
T ss_dssp             HHHHHTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGTTCSSC
T ss_pred             cccCccCceEEEecCCCCCCCc-C-ccccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCc--ccCCCCCC
Confidence            11  125999999999999975 4 999999999999999999764 48999999999999999999975  69999999


Q ss_pred             CeeeccCCccccc--cCCCCCCCCcccccCCCCCCCch
Q psy12044        174 EWLKLDNNKITTI--SGSNILPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       174 ~~L~Ls~N~Lt~i--p~~~~~~~~L~~L~Ls~N~l~C~  209 (767)
                      +.|+|++|+|+++  |..+..+++|+.|+|++|++...
T Consensus       511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            9999999999988  67777889999999999999754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.28  E-value=3.5e-13  Score=145.10  Aligned_cols=174  Identities=16%  Similarity=0.094  Sum_probs=111.9

Q ss_pred             eeEEEecCCCccccccCC--CCCccEEEeeCCCCCCC-CchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEc
Q psy12044         30 KQTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTL-HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF  106 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l-~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~L  106 (767)
                      -..+++.+..+...+..+  .++|+.|+|++|.+++. .+..+.  .+++|+.|+|++|.+++..+..|..+++|++|+|
T Consensus        72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            345666666665554444  45677777777777654 344444  3677777777777777666667777777777777


Q ss_pred             cCC-CCCCC-CCCCCCCCCCCcEEECCCC-cCccc-ccCCcCCCC-CccEEeccCC--Ccc-ccchhhhcCCCCCCeeec
Q psy12044        107 SHN-VLQTV-PSDTFPDYPSLMKLTLSGN-PIKQI-KTGAFQPLS-YLVTLELSKC--GIE-VIEDAAFVGLDSLEWLKL  178 (767)
Q Consensus       107 s~N-~Lt~l-~p~~f~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~-~L~~L~Ls~N--~L~-~i~~~~~~~l~~L~~L~L  178 (767)
                      ++| .+++. .+..+..+++|+.|+|++| .++.. .+..+..++ +|+.|+|++|  .++ ...+..+..+++|+.|+|
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            777 56542 3344556777777777777 77653 234456667 7777777777  444 333445666777777777


Q ss_pred             cCCc-cc-cccCCCCCCCCcccccCCCCC
Q psy12044        179 DNNK-IT-TISGSNILPTGLHGIDLHHNP  205 (767)
Q Consensus       179 s~N~-Lt-~ip~~~~~~~~L~~L~Ls~N~  205 (767)
                      ++|. ++ ..+..+...++|+.|+|++|.
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            7777 44 334444455777777777775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.26  E-value=2.6e-14  Score=142.79  Aligned_cols=108  Identities=26%  Similarity=0.280  Sum_probs=68.0

Q ss_pred             CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEe
Q psy12044         74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE  153 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  153 (767)
                      +++|+.|+|++|.|+++ | .|..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.+++++  .+..+++|+.|+
T Consensus        47 l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~  121 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSCS-SHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEE
T ss_pred             CCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCccccc-chhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEE
Confidence            66677777777766664 3 5666667777777777666543 34445566666666666666654  355666666666


Q ss_pred             ccCCCccccch-hhhcCCCCCCeeeccCCccccc
Q psy12044        154 LSKCGIEVIED-AAFVGLDSLEWLKLDNNKITTI  186 (767)
Q Consensus       154 Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~i  186 (767)
                      |++|.|+.+.. ..+..+++|+.|+|++|.++..
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            66666666543 4566666666666666666544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=1.8e-11  Score=131.90  Aligned_cols=102  Identities=33%  Similarity=0.414  Sum_probs=93.9

Q ss_pred             CCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCcc-EEeccCCCccccchhhhcCCCCCCee
Q psy12044         98 LTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV-TLELSKCGIEVIEDAAFVGLDSLEWL  176 (767)
Q Consensus        98 L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~-~L~Ls~N~L~~i~~~~~~~l~~L~~L  176 (767)
                      +++|+.|+|++|+++.++..+|.++.+|+.|+|.+| ++.+...+|.++.+|+ .|+|.+ .++.+.+.+|.++.+|+.|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999999999999999999999999998 9999999999999999 999998 8999999999999999999


Q ss_pred             eccCCccccccCCCCC-CCCcccccC
Q psy12044        177 KLDNNKITTISGSNIL-PTGLHGIDL  201 (767)
Q Consensus       177 ~Ls~N~Lt~ip~~~~~-~~~L~~L~L  201 (767)
                      +|++|+++.|+...|. ..+|+.|+.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            9999999999987664 567777653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.17  E-value=8.7e-13  Score=148.23  Aligned_cols=176  Identities=13%  Similarity=0.095  Sum_probs=111.7

Q ss_pred             eeEEEecCCCccccc-----cCC---CCCccEEEeeCCCCCCCC----chhhhccCCCCccEEEccCCCCCccC-----c
Q psy12044         30 KQTVECVNKSLITVV-----EGM---DPNTQVLDYTGNNLKTLH----NEKFQKMGLVNLQKIYLSRCRISVID-----S   92 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP-----~~l---~~~L~~L~Ls~N~L~~l~----~~~f~~~~L~~L~~L~Ls~N~L~~i~-----p   92 (767)
                      -+.++.++..+....     ..+   .++|+.|+|++|.++...    +..+..  +++|+.|+|++|.|+...     +
T Consensus       172 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~  249 (461)
T 1z7x_W          172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS--KASLRELALGSNKLGDVGMAELCP  249 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH--CTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh--CCCccEEeccCCcCChHHHHHHHH
Confidence            355666666654322     111   347888888888887643    334443  678888888888877643     2


Q ss_pred             ccccCCCCCCEEEccCCCCCCC----CCCCCCCCCCCcEEECCCCcCcccccCCcC-----CCCCccEEeccCCCcccc-
Q psy12044         93 KAFRGLTNLVDLDFSHNVLQTV----PSDTFPDYPSLMKLTLSGNPIKQIKTGAFQ-----PLSYLVTLELSKCGIEVI-  162 (767)
Q Consensus        93 ~~f~~L~~L~~L~Ls~N~Lt~l----~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-----~l~~L~~L~Ls~N~L~~i-  162 (767)
                      ..+..+++|++|+|++|.|+..    .+..+..+++|+.|+|++|.++......+.     ..++|+.|+|++|.+++. 
T Consensus       250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  329 (461)
T 1z7x_W          250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  329 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence            3334577888888888887763    234455677888888888877654332222     235777888888877765 


Q ss_pred             ---chhhhcCCCCCCeeeccCCccccccCC-C----C-CCCCcccccCCCCCCC
Q psy12044        163 ---EDAAFVGLDSLEWLKLDNNKITTISGS-N----I-LPTGLHGIDLHHNPWT  207 (767)
Q Consensus       163 ---~~~~~~~l~~L~~L~Ls~N~Lt~ip~~-~----~-~~~~L~~L~Ls~N~l~  207 (767)
                         .+..+..+++|+.|+|++|.|+..... +    . ..++|+.|+|++|.+.
T Consensus       330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence               234455667778888887777643211 1    1 1357777777777765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.16  E-value=1.5e-13  Score=137.12  Aligned_cols=134  Identities=21%  Similarity=0.166  Sum_probs=113.9

Q ss_pred             CCCccEEEccCCCCCccCcc------cccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCC
Q psy12044         74 LVNLQKIYLSRCRISVIDSK------AFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLS  147 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~~i~p~------~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  147 (767)
                      ...++.++++.+.+.+..|.      .|..+++|++|+|++|.|++++  .|..+++|+.|+|++|.|+.++. .+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCC
Confidence            45666667777777766555      8999999999999999999965  78899999999999999997653 566678


Q ss_pred             CccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC--CCCCCCCcccccCCCCCCCchhhh
Q psy12044        148 YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG--SNILPTGLHGIDLHHNPWTCDCLL  212 (767)
Q Consensus       148 ~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~--~~~~~~~L~~L~Ls~N~l~C~c~l  212 (767)
                      +|+.|+|++|.|++++  .+..+++|+.|+|++|+|+.++.  .+..+++|+.|++++|++.|.|..
T Consensus        94 ~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           94 TLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             cCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            9999999999999975  58889999999999999998764  455678999999999999988753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.14  E-value=2.7e-12  Score=144.16  Aligned_cols=134  Identities=20%  Similarity=0.299  Sum_probs=62.4

Q ss_pred             CCccEEEeeCCCCCCCC----chhhhccCCCCccEEEccCCCCCccCcccc-cCCC----CCCEEEccCCCCCC----CC
Q psy12044         49 PNTQVLDYTGNNLKTLH----NEKFQKMGLVNLQKIYLSRCRISVIDSKAF-RGLT----NLVDLDFSHNVLQT----VP  115 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~----~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f-~~L~----~L~~L~Ls~N~Lt~----l~  115 (767)
                      +++++|+|++|.|+...    +..+.  .+++|+.|+|++|.|+...+..+ ..+.    +|++|+|++|.|+.    ..
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            45555555555555321    12222  24555555555555554322222 2233    45555555555553    22


Q ss_pred             CCCCCCCCCCcEEECCCCcCcccccCC-----cCCCCCccEEeccCCCccccc----hhhhcCCCCCCeeeccCCccc
Q psy12044        116 SDTFPDYPSLMKLTLSGNPIKQIKTGA-----FQPLSYLVTLELSKCGIEVIE----DAAFVGLDSLEWLKLDNNKIT  184 (767)
Q Consensus       116 p~~f~~l~~L~~L~Ls~N~l~~l~~~~-----~~~l~~L~~L~Ls~N~L~~i~----~~~~~~l~~L~~L~Ls~N~Lt  184 (767)
                      +..|..+++|+.|+|++|.++......     +...++|+.|+|++|.++...    +..+..+++|+.|+|++|.++
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            344555555555555555554322211     112334555555555555432    233344455555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.05  E-value=4.4e-12  Score=139.57  Aligned_cols=163  Identities=15%  Similarity=0.181  Sum_probs=123.2

Q ss_pred             CCCCCccEEEeeCCCCCCCCchhhhcc---CCCCccEEEccCCCCCccCcccc-cCCCCCCEEEccCCCCCCCCCCCC--
Q psy12044         46 GMDPNTQVLDYTGNNLKTLHNEKFQKM---GLVNLQKIYLSRCRISVIDSKAF-RGLTNLVDLDFSHNVLQTVPSDTF--  119 (767)
Q Consensus        46 ~l~~~L~~L~Ls~N~L~~l~~~~f~~~---~L~~L~~L~Ls~N~L~~i~p~~f-~~L~~L~~L~Ls~N~Lt~l~p~~f--  119 (767)
                      .+.+.++.|+|++|.|+......+...   ...+|+.|+|++|.|+......+ ..+.+|+.|+|++|.|+......+  
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            345789999999999997766655532   23689999999999986543333 346789999999999976543333  


Q ss_pred             ---CCCCCCcEEECCCCcCccccc----CCcCCCCCccEEeccCCCccccc----hhhhcCCCCCCeeeccCCccccccC
Q psy12044        120 ---PDYPSLMKLTLSGNPIKQIKT----GAFQPLSYLVTLELSKCGIEVIE----DAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       120 ---~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~L~~i~----~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                         ...++|+.|+|++|.|+....    ..+..+++|+.|+|++|.|+...    ...+...++|+.|+|++|.|+....
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence               346789999999999976432    23466889999999999998654    4556778899999999999985432


Q ss_pred             -----CCCCCCCcccccCCCCCCCc
Q psy12044        189 -----SNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       189 -----~~~~~~~L~~L~Ls~N~l~C  208 (767)
                           .+...++|+.|+|++|.+.-
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCH
Confidence                 22234789999999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.94  E-value=3.9e-09  Score=117.17  Aligned_cols=163  Identities=16%  Similarity=0.257  Sum_probs=118.7

Q ss_pred             EEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         33 VECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        33 v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      +.... .+..|....   ..+|+.|+|++|.++.++...|.   +.+|+.|.|.+ .++.+...+|.++.+|+.|+|..|
T Consensus       162 i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          162 IVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV---YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             EECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT---TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT
T ss_pred             EEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe---ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC
Confidence            44433 556666544   46789999999999998888887   57888888874 488888888888888888888764


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCcc-----ccchhhhcCCCCCCeeeccCCccc
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIE-----VIEDAAFVGLDSLEWLKLDNNKIT  184 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~-----~i~~~~~~~l~~L~~L~Ls~N~Lt  184 (767)
                       ++.+...+|.+ .+|+.+.| .|.++.+...+|.++.+|+.|+|.+|.+.     .+...+|.++.+|+.|+|. |.++
T Consensus       237 -l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~  312 (401)
T 4fdw_A          237 -VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR  312 (401)
T ss_dssp             -CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC
T ss_pred             -ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE
Confidence             67777777776 67777777 45577777777777777777777776655     5666777777777777777 4577


Q ss_pred             cccCCCCC-CCCcccccCCCC
Q psy12044        185 TISGSNIL-PTGLHGIDLHHN  204 (767)
Q Consensus       185 ~ip~~~~~-~~~L~~L~Ls~N  204 (767)
                      .|....|. +.+|+.|.|..|
T Consensus       313 ~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          313 ILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             EECTTTTTTCCSCCEEEECTT
T ss_pred             EEhhhhhcCCCCccEEEECcc
Confidence            77666554 367777777554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.87  E-value=7.8e-09  Score=114.70  Aligned_cols=158  Identities=19%  Similarity=0.250  Sum_probs=134.9

Q ss_pred             CccccccCCC--CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCC
Q psy12044         39 SLITVVEGMD--PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS  116 (767)
Q Consensus        39 ~L~~iP~~l~--~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p  116 (767)
                      ++..|+...+  .+|+.|.|.+ .+..+....|..  |.+|+.|+|.+|.++.+...+|. ..+|+.|.|. +.++.+..
T Consensus       145 ~i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~--c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp-~~l~~I~~  219 (401)
T 4fdw_A          145 GLKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYY--CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP-VTLKEIGS  219 (401)
T ss_dssp             TCCEECTTTTTTCCCCEEECCT-TCCEECSSTTTT--CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC-TTCCEECT
T ss_pred             CccEECHHhcCCCCceEEEeCC-CccEehHHHhhC--cccCCeeecCCCcceEechhhEe-ecccCEEEeC-Cchheehh
Confidence            3666665442  4689999986 889999999984  89999999999999999999998 5899999998 45999999


Q ss_pred             CCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc-----cccCCCC
Q psy12044        117 DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT-----TISGSNI  191 (767)
Q Consensus       117 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt-----~ip~~~~  191 (767)
                      .+|.++.+|+.|.|..| ++.+...+|.+ .+|+.+.| .+.++.+...+|.++.+|+.|+|.+|.+.     .|+...|
T Consensus       220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF  296 (401)
T 4fdw_A          220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL  296 (401)
T ss_dssp             TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred             hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence            99999999999999975 88899999998 78999999 56789999999999999999999998776     6776655


Q ss_pred             -CCCCcccccCCCC
Q psy12044        192 -LPTGLHGIDLHHN  204 (767)
Q Consensus       192 -~~~~L~~L~Ls~N  204 (767)
                       .+.+|+.+.|.++
T Consensus       297 ~~c~~L~~l~l~~~  310 (401)
T 4fdw_A          297 EGCPKLARFEIPES  310 (401)
T ss_dssp             TTCTTCCEECCCTT
T ss_pred             hCCccCCeEEeCCc
Confidence             4578999999854

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.83  E-value=3e-10  Score=124.89  Aligned_cols=155  Identities=14%  Similarity=0.121  Sum_probs=115.3

Q ss_pred             eEEEecCCCccccc-----cCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccc-----cC
Q psy12044         31 QTVECVNKSLITVV-----EGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF-----RG   97 (767)
Q Consensus        31 ~~v~C~~~~L~~iP-----~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f-----~~   97 (767)
                      +.++.++..+....     ..+   ..+|+.|+|++|.|+......+.. .+.+|+.|+|++|.|+......|     ..
T Consensus        75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~  153 (372)
T 3un9_A           75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLNSLGPEACKDLRDLLLHD  153 (372)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-HHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred             CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-HHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence            45666666655422     111   268999999999998654444432 36789999999999987654444     35


Q ss_pred             CCCCCEEEccCCCCCCCC----CCCCCCCCCCcEEECCCCcCcccc----cCCcCCCCCccEEeccCCCccccch----h
Q psy12044         98 LTNLVDLDFSHNVLQTVP----SDTFPDYPSLMKLTLSGNPIKQIK----TGAFQPLSYLVTLELSKCGIEVIED----A  165 (767)
Q Consensus        98 L~~L~~L~Ls~N~Lt~l~----p~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~L~~i~~----~  165 (767)
                      .++|++|+|++|.|+...    ...+..+++|++|+|++|.|+...    ...+...++|+.|+|++|.|+....    .
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            689999999999987532    233456889999999999998643    3456677899999999999987543    3


Q ss_pred             hhcCCCCCCeeeccCCccccc
Q psy12044        166 AFVGLDSLEWLKLDNNKITTI  186 (767)
Q Consensus       166 ~~~~l~~L~~L~Ls~N~Lt~i  186 (767)
                      .+...++|+.|+|++|.|+..
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHhCCCCCEEeccCCCCCHH
Confidence            455678999999999999853

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.63  E-value=1.8e-09  Score=125.11  Aligned_cols=157  Identities=11%  Similarity=0.074  Sum_probs=95.0

Q ss_pred             CCCccEEEeeCCCCCCCC-chhhhccCCCCccEEEccC-----------CCCCccC-cccccCCCCCCEEEccCCCCCCC
Q psy12044         48 DPNTQVLDYTGNNLKTLH-NEKFQKMGLVNLQKIYLSR-----------CRISVID-SKAFRGLTNLVDLDFSHNVLQTV  114 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~-~~~f~~~~L~~L~~L~Ls~-----------N~L~~i~-p~~f~~L~~L~~L~Ls~N~Lt~l  114 (767)
                      .++|+.|+|+ +.+.... ...+.  .+++|+.|+|++           |.++... ...+.++++|++|+|+.|.+++.
T Consensus       317 ~~~L~~L~L~-~~~~~~~l~~~~~--~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~  393 (592)
T 3ogk_B          317 CPNLEVLETR-NVIGDRGLEVLAQ--YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE  393 (592)
T ss_dssp             CTTCCEEEEE-GGGHHHHHHHHHH--HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred             CcCCCEEecc-CccCHHHHHHHHH--hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence            5678888888 4444322 22223  367788888883           5555432 22244577888888877777764


Q ss_pred             CCCCCCC-CCCCcEEECC----CCcCccccc-----CCcCCCCCccEEeccCCC--ccccchhhhc-CCCCCCeeeccCC
Q psy12044        115 PSDTFPD-YPSLMKLTLS----GNPIKQIKT-----GAFQPLSYLVTLELSKCG--IEVIEDAAFV-GLDSLEWLKLDNN  181 (767)
Q Consensus       115 ~p~~f~~-l~~L~~L~Ls----~N~l~~l~~-----~~~~~l~~L~~L~Ls~N~--L~~i~~~~~~-~l~~L~~L~Ls~N  181 (767)
                      ....+.. +++|+.|+|+    .|.+++.+.     ..+.++++|+.|+|+.|.  +++.....+. .+++|+.|+|++|
T Consensus       394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n  473 (592)
T 3ogk_B          394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV  473 (592)
T ss_dssp             HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred             HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence            4444443 6778888885    666765421     224557778888876433  5544433333 3677888888887


Q ss_pred             cccc--ccCCCCCCCCcccccCCCCCCC
Q psy12044        182 KITT--ISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       182 ~Lt~--ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      .++.  ++......++|+.|+|++|++.
T Consensus       474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          474 GESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             CSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             CCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence            7763  2322234467777888887753

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.54  E-value=4.5e-08  Score=87.53  Aligned_cols=91  Identities=20%  Similarity=0.316  Sum_probs=69.9

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+......       .....   .....|.|.++..+|.|.
T Consensus        14 P~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~-------~~~~~---~~~~~L~I~~v~~~D~G~   83 (107)
T 3knb_B           14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERL-------SFPAD---GAEHGLLLTAALPTDAGV   83 (107)
T ss_dssp             EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSE-------ECCEE---TTEEEEEESSCCGGGCEE
T ss_pred             CEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeE-------EEeec---CceEEEEEecCChhhCEE
Confidence            34444455678889999999999999999999999999877543221       11111   124579999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEE
Q psy12044        335 FVCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~  355 (767)
                      |.|.|.|..|.....+.|.|.
T Consensus        84 Y~C~a~N~~G~~~~~~~l~V~  104 (107)
T 3knb_B           84 YVCRARNAAGEAYAAAAVTVL  104 (107)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEEE
Confidence            999999999988777766654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.53  E-value=5.2e-08  Score=85.91  Aligned_cols=91  Identities=23%  Similarity=0.375  Sum_probs=68.8

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+.....     ..+.....   .....|.|.++..+|.|.|.
T Consensus         8 i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~-----~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~   79 (100)
T 3knb_A            8 IEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ-----GRFHIENT---DDLTTLIIMDVQKQDGGLYT   79 (100)
T ss_dssp             ECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGG-----GTEEEEEC---SSEEEEEESSCCGGGCEEEE
T ss_pred             EEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeecc-----ceeeeecc---cceEEEEEcCCCccCCEEEE
Confidence            33344567888999999999999999999999999887754321     11111111   12457999999999999999


Q ss_pred             EeeccCCCCcccceEEEEE
Q psy12044        337 CVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V~  355 (767)
                      |.|.|..|.....+.+.|.
T Consensus        80 C~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           80 LSLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEEE
Confidence            9999999988777766654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.50  E-value=1e-08  Score=118.68  Aligned_cols=130  Identities=12%  Similarity=0.124  Sum_probs=76.1

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCC-CccEEEccCCC-CCcc-CcccccCCCCCCEEEccCCCCCCCCC----CCCCC
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLV-NLQKIYLSRCR-ISVI-DSKAFRGLTNLVDLDFSHNVLQTVPS----DTFPD  121 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~-~L~~L~Ls~N~-L~~i-~p~~f~~L~~L~~L~Ls~N~Lt~l~p----~~f~~  121 (767)
                      ++|++|+|++|.+++.....+... ++ +|+.|+|++|. ++.. .+..+.++++|++|+|++|.+++...    ..+..
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKA-RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHH-HGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             CCCCeEEeeccEecHHHHHHHHHh-ccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            566677777776655444444321 22 37777776665 1110 11222356777777777777655422    12345


Q ss_pred             CCCCcEEECCCCcCccccc----CCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccC
Q psy12044        122 YPSLMKLTLSGNPIKQIKT----GAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN  180 (767)
Q Consensus       122 l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~  180 (767)
                      +++|+.|+|++|.++++..    ..+..+++|+.|+|++|.+.+++ ..+..+++|+.|+++.
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGS  252 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECB
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccc
Confidence            6777777777777763332    23345677777777777777654 4566677777777764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.46  E-value=1.8e-08  Score=116.57  Aligned_cols=85  Identities=14%  Similarity=0.106  Sum_probs=41.8

Q ss_pred             CCCCCcEEECCCCcCcccccCCcCC-CCCccEEeccCCCccccchhhh-cCCCCCCeeeccCCcccccc--CCCCCCCCc
Q psy12044        121 DYPSLMKLTLSGNPIKQIKTGAFQP-LSYLVTLELSKCGIEVIEDAAF-VGLDSLEWLKLDNNKITTIS--GSNILPTGL  196 (767)
Q Consensus       121 ~l~~L~~L~Ls~N~l~~l~~~~~~~-l~~L~~L~Ls~N~L~~i~~~~~-~~l~~L~~L~Ls~N~Lt~ip--~~~~~~~~L  196 (767)
                      .+++|+.|+|++ .++......+.. +++|+.|+|++|.+++.....+ ..+++|+.|+|++|.++...  .....+++|
T Consensus       430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L  508 (594)
T 2p1m_B          430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM  508 (594)
T ss_dssp             HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred             hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence            345555555544 333322222222 4556666666666554433333 44566666666666654221  111223556


Q ss_pred             ccccCCCCCC
Q psy12044        197 HGIDLHHNPW  206 (767)
Q Consensus       197 ~~L~Ls~N~l  206 (767)
                      +.|++++|++
T Consensus       509 ~~L~l~~~~~  518 (594)
T 2p1m_B          509 RSLWMSSCSV  518 (594)
T ss_dssp             SEEEEESSCC
T ss_pred             CEEeeeCCCC
Confidence            6666666655

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.38  E-value=2.8e-07  Score=80.10  Aligned_cols=91  Identities=22%  Similarity=0.463  Sum_probs=68.0

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +...+....+..|..+.|.|.+.+.|.+.+.|.+++..+......     ......    .....|.|.++...|.|.|.
T Consensus         8 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-----~~~~~~----~~~~~L~i~~v~~~D~G~Y~   78 (100)
T 2kdg_A            8 FIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLH-----KMIVSE----KGLHSLIFEVVRASDAGAYA   78 (100)
T ss_dssp             CCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSS-----CEEEET----TTEEEEEESSCCGGGCEEEE
T ss_pred             EEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcE-----EEEEcC----CCeEEEEECCCCcccCEEEE
Confidence            333445567889999999999999999999999988776543211     111111    12357999999999999999


Q ss_pred             EeeccCCCCcccceEEEEEe
Q psy12044        337 CVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V~~  356 (767)
                      |.+.|..|.....+.+.|..
T Consensus        79 C~a~n~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           79 CVAKNRAGEATFTVQLDVLA   98 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEcCCCeEEEEEEEEEEe
Confidence            99999999877777766654

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.38  E-value=2.1e-07  Score=80.12  Aligned_cols=82  Identities=15%  Similarity=0.319  Sum_probs=63.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--eeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .....+..|+.+.|.|.+.+.|.|.+.|.+++  ..+.....       ..     .....+.|.|.++..+|.|.|.|.
T Consensus         9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~-------~~-----~~~~~~~L~i~~~~~~D~G~Y~C~   76 (93)
T 1wit_A            9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL-------VD-----AKSSTTSIFFPSAKRADSGNYKLK   76 (93)
T ss_dssp             CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSE-------EE-----EETTEEEEECTTBCGGGCEEEEEE
T ss_pred             CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEE-------EE-----ecCCEEEEEECCCChhcCEEEEEE
Confidence            44567889999999999999999999999988  65533211       00     012346799999999999999999


Q ss_pred             eccCCCCcccceEEEE
Q psy12044        339 AENQAGSTSSNYTIRI  354 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V  354 (767)
                      |.|..|.....+.+.|
T Consensus        77 a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           77 VKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEcCCCeEEEEEEEEE
Confidence            9999997766655543

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.37  E-value=8.1e-07  Score=80.19  Aligned_cols=95  Identities=26%  Similarity=0.416  Sum_probs=71.0

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+....      ..+.....+  .....|.|.++...|.|.
T Consensus        16 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~------~~~~~~~~~--~~~~~L~I~~v~~~D~G~   87 (116)
T 2kkq_A           16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT------DRISLYQDN--TGRVTLLIKDVNKKDAGW   87 (116)
T ss_dssp             CCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCB------TTEEEEECT--TCEEEEEEEEECGGGCEE
T ss_pred             CeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCC------CeEEEEeCC--CCeEEEEECCCCcccCEE
Confidence            445555566788999999999999999999999999887664321      111111111  123579999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEee
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      |.|.+.|..|.....+.+.|...
T Consensus        88 Y~C~a~N~~G~~~~~~~l~V~~~  110 (116)
T 2kkq_A           88 YTVSAVNEAGVTTCNTRLDVTAR  110 (116)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEEcCCCeEEEEEEEEEeCC
Confidence            99999999998877777766653

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.36  E-value=5.2e-07  Score=80.79  Aligned_cols=94  Identities=23%  Similarity=0.320  Sum_probs=72.4

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+........+..|+.+.|.|.+.+.|.+.+.|++++..+.....       +....   ......|.|.++...|.|.
T Consensus         8 p~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~-------~~~~~---~~~~~~L~I~~v~~~D~G~   77 (114)
T 2cqv_A            8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH-------MKVEN---SENGSKLTILAARQEHCGC   77 (114)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSS-------EEEEE---CSSEEEEEETTCCTTTCEE
T ss_pred             CEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCC-------EEEEE---cCCEEEEEECCCChhcCEE
Confidence            4444455567888999999999999999999999998876643221       11111   1225689999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEeec
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVLKE  358 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~~~  358 (767)
                      |+|.+.|..|.....+.+.|...+
T Consensus        78 Y~C~a~N~~g~~~~~~~l~V~~~p  101 (114)
T 2cqv_A           78 YTLLVENKLGSRQAQVNLTVVDKP  101 (114)
T ss_dssp             EEEEEECSSCEEECCEEEEEECSC
T ss_pred             EEEEEEECCCcEEEEEEEEEECCC
Confidence            999999999988888888877544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.36  E-value=6.7e-08  Score=111.77  Aligned_cols=131  Identities=19%  Similarity=0.171  Sum_probs=82.9

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCC-CCCcc-CcccccCCCCCCEEEccCCCCCCCCCCCC----CC
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRC-RISVI-DSKAFRGLTNLVDLDFSHNVLQTVPSDTF----PD  121 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N-~L~~i-~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f----~~  121 (767)
                      .++|+.|+|++|.+++.....+.. .+++|+.|+|++| .++.. .+..+.++++|++|+|++|.+++..+..+    ..
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            357888888888777655555531 2678888888887 44442 23334467888888888888766543333    35


Q ss_pred             CCCCcEEECCCCcCcccccCC----cCCCCCccEEeccCC-CccccchhhhcCCCCCCeeeccCC
Q psy12044        122 YPSLMKLTLSGNPIKQIKTGA----FQPLSYLVTLELSKC-GIEVIEDAAFVGLDSLEWLKLDNN  181 (767)
Q Consensus       122 l~~L~~L~Ls~N~l~~l~~~~----~~~l~~L~~L~Ls~N-~L~~i~~~~~~~l~~L~~L~Ls~N  181 (767)
                      +++|+.|+|++|. ..+....    +..+++|+.|+|++| .+.+ .+..+..+++|+.|+++.+
T Consensus       183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBC
T ss_pred             CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccc
Confidence            6688888888876 2222111    233578888888877 4444 4455666777777765443

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=8.9e-07  Score=77.04  Aligned_cols=85  Identities=25%  Similarity=0.391  Sum_probs=65.5

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .+....+..|+.+.|.|.+.+.|.+.+.|.+++..+.....      .+...      ..+.|.|.++...|.|.|.|.+
T Consensus        14 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~------~~~~~------~~~~L~i~~v~~~d~G~Y~C~a   81 (100)
T 2edj_A           14 GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDP------RATIQ------EQGTLQIKNLRISDTGTYTCVA   81 (100)
T ss_dssp             CCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCS------SCEEC------TTCCEEEESCCTTTCCEEEEEE
T ss_pred             CcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCC------CEEEc------CCCEEEEccCCcccCEEEEEEE
Confidence            34456778999999999999999999999998876642111      01111      1246999999999999999999


Q ss_pred             ccCCCCcccceEEEEEe
Q psy12044        340 ENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~~  356 (767)
                      .|..|.....+.+.|..
T Consensus        82 ~n~~g~~~~~~~l~V~~   98 (100)
T 2edj_A           82 TSSSGETSWSAVLDVTE   98 (100)
T ss_dssp             ECSSCCCBCCEEEEEES
T ss_pred             EcCCCCEEEEEEEEEec
Confidence            99999888877776653

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=1e-06  Score=78.26  Aligned_cols=95  Identities=25%  Similarity=0.349  Sum_probs=70.3

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+........+.+|..+.|.|.+.+.|.+.+.|++++..+.....      .+.....  ......|.|.++...|.|.
T Consensus         9 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~------~~~~~~~--~~~~~~L~i~~v~~~D~G~   80 (110)
T 2dm2_A            9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSD------HYTIQRD--LDGTCSLHTTASTLDDDGN   80 (110)
T ss_dssp             CCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCS------SEEEEEC--TTCEEEEEESSCCTTTCSC
T ss_pred             CEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCC------eEEEEEC--CCcEEEEEECCCChhhCEE
Confidence            3444445567788999999999999999999999998876643211      1111111  1123579999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEee
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      |.|.+.|..|.....+.+.|...
T Consensus        81 Y~C~a~N~~g~~~~~~~l~V~~~  103 (110)
T 2dm2_A           81 YTIMAANPQGRISCTGRLMVQAV  103 (110)
T ss_dssp             CEEEEECTTCCEEECCCEEEECC
T ss_pred             EEEEEEECCCeEEEEEEEEEECC
Confidence            99999999999888777777653

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.32  E-value=2.7e-07  Score=80.76  Aligned_cols=93  Identities=27%  Similarity=0.410  Sum_probs=69.8

Q ss_pred             CCCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       254 ~P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      .|.+........+..|+.+.|.|.+.+.|.|.+.|.+++..+.....       +....   ......|.|.++..+|.|
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~-------~~~~~---~~~~~~L~i~~~~~~D~G   77 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSK-------IHYTN---TSGVLTLEILDCHTDDSG   77 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSS-------EEEEE---ETTEEEEEECSCCGGGCE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCC-------EEEEE---CCCEEEEEEcCCCcccCE
Confidence            34444445567788999999999999999999999999877654321       11111   112357999999999999


Q ss_pred             ceeEeeccCCCCcccceEEEEEe
Q psy12044        334 TFVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       334 tY~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      .|.|.|.|..|.....+.+.|..
T Consensus        78 ~Y~C~a~N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           78 TYRAVCTNYKGEASDYATLDVTG  100 (103)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEeCCCcEEEEEEEEEEC
Confidence            99999999999887777666643

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=4.3e-07  Score=80.51  Aligned_cols=95  Identities=31%  Similarity=0.547  Sum_probs=70.8

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+........+.+|..+.|.|.+.+.|.+.+.|++++..+......     ......    .....|.|.++..+|.|.
T Consensus        10 P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-----~~~~~~----~~~~~L~i~~v~~~D~G~   80 (110)
T 2dm3_A           10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAH-----KMLVRE----NGVHSLIIEPVTSRDAGI   80 (110)
T ss_dssp             CEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSE-----EEEECT----TSCEEEEESSCCGGGCSB
T ss_pred             CcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCce-----EEEEec----CCeEEEEEeeCCcccCEE
Confidence            33434445678889999999999999999999999987665432211     111111    124579999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEeec
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVLKE  358 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~~~  358 (767)
                      |.|.+.|..|.....+.+.|..++
T Consensus        81 Y~C~a~n~~g~~~~~~~l~V~~~p  104 (110)
T 2dm3_A           81 YTCIATNRAGQNSFSLELVVAAKE  104 (110)
T ss_dssp             BCEEEECSSCEEEECCEEEEECCC
T ss_pred             EEEEEECCCCEEEEEEEEEEeCCC
Confidence            999999999998888888776644

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.31  E-value=3.2e-07  Score=79.61  Aligned_cols=87  Identities=23%  Similarity=0.305  Sum_probs=65.7

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ......+..|+.+.|.|.+.+.|.+.+.|++++..+......       ....  .......|.|.++..+|.|.|.|.|
T Consensus        11 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~-------~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (99)
T 1g1c_A           11 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRI-------YWYW--PEDNVCELVIRDVTGEDSASIMVKA   81 (99)
T ss_dssp             CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSE-------EEEE--EETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCE-------EEEE--cCCCEEEEEECCCCcCCCEEEEEEE
Confidence            344567889999999999999999999999998776543211       1100  0112457999999999999999999


Q ss_pred             ccCCCCcccceEEEEE
Q psy12044        340 ENQAGSTSSNYTIRIV  355 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~  355 (767)
                      .|..|.....+.+.|.
T Consensus        82 ~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           82 INIAGETSSHAFLLVQ   97 (99)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCcEEEEEEEEEe
Confidence            9999988776666554

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=4e-07  Score=79.12  Aligned_cols=85  Identities=32%  Similarity=0.553  Sum_probs=64.6

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +...+....+..|+.+.|.|.+.+.|.|.+.|.+++..+......             .......|.|.++..+|.|.|.
T Consensus        14 ~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-------------~~~~~~~L~i~~v~~~D~G~Y~   80 (99)
T 2yr3_A           14 FSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST-------------CEAGVAELHIQDALPEDHGTYT   80 (99)
T ss_dssp             EEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCE-------------EETTEEEEEECSCCTTCCBCEE
T ss_pred             eeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceE-------------eeCCeEEEEECCCChhhCEEEE
Confidence            333344567889999999999999999999999988766432211             0112467999999999999999


Q ss_pred             EeeccCCCCcccceEEEE
Q psy12044        337 CVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V  354 (767)
                      |.+.|..|.....+.+.|
T Consensus        81 C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           81 CLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             EEEECSSCEEEEECCEEE
T ss_pred             EEEEECCCeEEEEEEEEE
Confidence            999999998766555443

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.30  E-value=1.1e-06  Score=77.90  Aligned_cols=95  Identities=12%  Similarity=0.182  Sum_probs=65.1

Q ss_pred             CCCCccceeecccccccccccccccCC---CcEEEeecCeeccCCCcccccccceeec---ccCcceeeeEEEEeeeccC
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPE---AKITWLFDGVPIQNESMSASESHAVYST---EEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~---p~itW~~~g~~l~~~s~~~~~~~~~~~~---~~g~~~~~s~L~I~nvs~s  330 (767)
                      +...+..+.+..|+.++|.|.+.+.|.   |.+.|++++.......   ... .+.+.   ..........|.|.++...
T Consensus         7 f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSK---VGQ-HLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGG---CBT-TEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             EEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCccccccc---CCc-eEEEeeEEecccccceEEEEEecCCCc
Confidence            333445677889999999999999998   9999998652211100   000 11111   0111223578999999999


Q ss_pred             CCCceeEeeccCCCCcccceEEEEE
Q psy12044        331 DNGTFVCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       331 D~GtY~CvA~N~~G~s~~s~sL~V~  355 (767)
                      |.|.|.|.+.|..|...+.+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEEe
Confidence            9999999999999988877777653

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.27  E-value=8.3e-07  Score=78.23  Aligned_cols=91  Identities=21%  Similarity=0.300  Sum_probs=61.2

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+........+..|+.+.|.|.+.+.|.+.+.|.+++..+.....       ....     ...+.|.|.++..+|.|.
T Consensus        11 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~-------~~~~-----~~~~~L~i~~v~~~D~G~   78 (108)
T 3kvq_A           11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG-------IVLK-----DGNRNLTIRRVRKEDEGL   78 (108)
T ss_dssp             CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTT-------EEEE-----TTTTEEEECSCCGGGCEE
T ss_pred             CceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCC-------eEEe-----CCCcEEEEeecCcccCEE
Confidence            3444445567788999999999999999999999998766543211       1111     123579999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEee
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      |.|.+.|..|.....+.+.|...
T Consensus        79 Y~C~a~n~~g~~~~~~~l~V~~~  101 (108)
T 3kvq_A           79 YTCQACSVLGCAKVEAFFIIEGA  101 (108)
T ss_dssp             EEEEEC----CEEEEEEEEEEC-
T ss_pred             EEEEEEeCCCceEEEEEEEEeCC
Confidence            99999999999888877777653

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=1.9e-06  Score=77.58  Aligned_cols=92  Identities=20%  Similarity=0.360  Sum_probs=69.5

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+........+..|+.+.|.|.+.+.|.+.+.|++++..+....      ..+...      ..+.|.|.++..+|.|.
T Consensus         9 P~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~------~~~~~~------~~~~L~i~~v~~~D~G~   76 (118)
T 2eo9_A            9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQD------SRIKQL------ENGVLQIRYAKLGDTGR   76 (118)
T ss_dssp             CCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTS------TTEEEE------ETTEEEEESCCGGGCCC
T ss_pred             CEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCC------CeEEEc------cCCEEEEccCCcCCCEE
Confidence            344444556778899999999999999999999999887664311      111111      13479999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEeec
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVLKE  358 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~~~  358 (767)
                      |.|.+.|..|.....+.+.|....
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~~~  100 (118)
T 2eo9_A           77 YTCIASTPSGEATWSAYIEVQEFG  100 (118)
T ss_dssp             EEEEEECSSCEEEEECCEEEECCS
T ss_pred             EEEEEEcCCCcEEEEEEEEEEeCC
Confidence            999999999988777777776543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.24  E-value=5.2e-07  Score=98.54  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=102.6

Q ss_pred             CCCccEEEeeCCCCCC-----C----CchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCC
Q psy12044         48 DPNTQVLDYTGNNLKT-----L----HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDT  118 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~-----l----~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~  118 (767)
                      +++|+.|.|..+.+..     +    ....+.  .+++|+.|+|++|.-..+.+  +. +++|+.|+|..|.++......
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~--~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH--TCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHh--cCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHH
Confidence            4689999997654321     1    123333  37899999999873122222  43 889999999988876432222


Q ss_pred             C--CCCCCCcEEECCC--Cc------CcccccCCc--CCCCCccEEeccCCCccccchhhhc---CCCCCCeeeccCCcc
Q psy12044        119 F--PDYPSLMKLTLSG--NP------IKQIKTGAF--QPLSYLVTLELSKCGIEVIEDAAFV---GLDSLEWLKLDNNKI  183 (767)
Q Consensus       119 f--~~l~~L~~L~Ls~--N~------l~~l~~~~~--~~l~~L~~L~Ls~N~L~~i~~~~~~---~l~~L~~L~Ls~N~L  183 (767)
                      +  ..+++|+.|+|+.  |.      +..+.+ .+  ..+++|+.|+|++|.+.......+.   .+++|+.|+|+.|.|
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            2  2688999999853  22      111111 12  2478999999999998864443343   478999999999999


Q ss_pred             cc-----ccCCCCCCCCcccccCCCCCCC
Q psy12044        184 TT-----ISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       184 t~-----ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      +.     +...+..+++|+.|+|++|.+.
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            85     3332223478999999999876

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.23  E-value=7.6e-07  Score=78.99  Aligned_cols=90  Identities=23%  Similarity=0.413  Sum_probs=67.4

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+...+....+..|+.+.|.|.+.+.|.|.+.|.+++..+.....       +....   ......|.|.++...|.|.
T Consensus        15 ~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~-------~~~~~---~~~~~~L~I~~v~~~D~G~   84 (106)
T 1nct_A           15 ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR-------HQVTT---TKYKSTFEISSVQASDEGN   84 (106)
T ss_dssp             CEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSS-------EEEEE---CSSEEEEEECCCCSSCCSE
T ss_pred             CEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCC-------EEEEE---CCCEEEEEECcCCchhCEE
Confidence            3344445567889999999999999999999999998866543211       11111   1124689999999999999


Q ss_pred             eeEeeccCCCCcccceEEEE
Q psy12044        335 FVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V  354 (767)
                      |.|.+.|..|.....+.+.|
T Consensus        85 Y~C~a~N~~G~~~~~~~l~V  104 (106)
T 1nct_A           85 YSVVVENSEGKQEAEFTLTI  104 (106)
T ss_dssp             EEECCBCSSCBCCEEEEEEE
T ss_pred             EEEEEEeCCCeEEEEEEEEE
Confidence            99999999998777666654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.22  E-value=6.8e-07  Score=77.45  Aligned_cols=86  Identities=20%  Similarity=0.374  Sum_probs=64.6

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +....+..|..+.|.|.+.+.|.+.+.|.+++..+.....      .+....   ......|.|.++...|.|.|.|.+.
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~------~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (99)
T 1u2h_A           12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR------RFAEEA---EGGLCRLRILAAERGDAGFYTCKAV   82 (99)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTT------EEEEEC---GGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCC------EEEEEC---CCCEEEEEEccCCcCCCEEEEEEEE
Confidence            3456788999999999999999999999998876643221      111111   1123479999999999999999999


Q ss_pred             cCCCCcccceEEEEE
Q psy12044        341 NQAGSTSSNYTIRIV  355 (767)
Q Consensus       341 N~~G~s~~s~sL~V~  355 (767)
                      |..|.....+.+.|.
T Consensus        83 N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           83 NEYGARQCEARLEVR   97 (99)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCceeEEEEEEEE
Confidence            999987776666553

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.22  E-value=1.1e-06  Score=77.51  Aligned_cols=83  Identities=13%  Similarity=0.278  Sum_probs=62.6

Q ss_pred             ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcc
Q psy12044        268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~  347 (767)
                      .+..+.+.|.+.|.|.|.++|.+++..+......     .......+.....+.|.|.++..+|.|.|+|.|.|..|...
T Consensus        15 ~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~-----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   89 (103)
T 1wwb_X           15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYI-----CTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE   89 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSE-----EEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEE
T ss_pred             ECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcE-----eEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEe
Confidence            4567889999999999999999999877654211     01111123334567799999999999999999999999987


Q ss_pred             cceEEEEE
Q psy12044        348 SNYTIRIV  355 (767)
Q Consensus       348 ~s~sL~V~  355 (767)
                      ..+.+.|.
T Consensus        90 ~~~~l~V~   97 (103)
T 1wwb_X           90 KQISAHFM   97 (103)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEEEC
Confidence            77766554

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.22  E-value=1.1e-06  Score=75.99  Aligned_cols=83  Identities=22%  Similarity=0.440  Sum_probs=62.9

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +........+..|+.+.|.|.+.+.| +.+.|.+++..+.....       +..       ....|.|.++...|.|.|.
T Consensus        12 ~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~-------~~~-------~~~~L~i~~~~~~D~G~Y~   76 (95)
T 2ckn_A           12 VPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNR-------TRI-------TGEEVEVRDSIPADSGLYA   76 (95)
T ss_dssp             BTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSS-------EEE-------CSSEEEESSCCGGGSEEEE
T ss_pred             EEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCC-------EEE-------eCCEEEECCCChHHCEEEE
Confidence            33344566788999999999999988 89999998876643211       111       1357999999999999999


Q ss_pred             EeeccCCCCcccceEEEE
Q psy12044        337 CVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V  354 (767)
                      |.+.|..|.....+.+.|
T Consensus        77 C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           77 CVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEeccCCCcEEEEEEEEE
Confidence            999999988766655544

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=2.4e-06  Score=76.89  Aligned_cols=84  Identities=14%  Similarity=0.277  Sum_probs=65.4

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|+.+.|.|.+.+.|.|.+.|.+++..+.....        .+.   .......|.|.++...|.|.|.|.|.|
T Consensus        32 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~--------~~~---~~~~~~~L~i~~~~~~D~G~Y~C~a~N  100 (118)
T 2e7c_A           32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRV--------HVR---TSDFDTVFFVRQAARSDSGEYELSVQI  100 (118)
T ss_dssp             SCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSC--------EEE---ECSSEEEEEESSCCTTTCEEEEEEEEC
T ss_pred             CCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcE--------EEE---ECCCeEEEEECCCChhcCEEEEEEEEe
Confidence            456788899999999999999999999999887642111        111   112346799999999999999999999


Q ss_pred             CCCCcccceEEEEEe
Q psy12044        342 QAGSTSSNYTIRIVL  356 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~  356 (767)
                      ..|.....+.+.|..
T Consensus       101 ~~G~~~~~~~l~V~~  115 (118)
T 2e7c_A          101 ENMKDTATIRIRVVE  115 (118)
T ss_dssp             SSCEECCEEEEEEEC
T ss_pred             CCCeEEEEEEEEEEc
Confidence            999877777666643

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.16  E-value=1.1e-06  Score=76.11  Aligned_cols=86  Identities=22%  Similarity=0.310  Sum_probs=65.0

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ......+..|..+.|.|.+.+.|.+.+.|.+++..+.....       +.....   .....|.|.++...|.|.|.|.+
T Consensus        12 ~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~-------~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a   81 (99)
T 3puc_A           12 GLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGK-------YKLSED---KGGFFLEIHKTDTSDSGLYTCTV   81 (99)
T ss_dssp             CCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSS-------EEEEEE---TTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCC-------EEEEEe---CCEEEEEECCCCcccCEEEEEEE
Confidence            34456788999999999999999999999998877643221       111111   12357999999999999999999


Q ss_pred             ccCCCCcccceEEEEE
Q psy12044        340 ENQAGSTSSNYTIRIV  355 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~  355 (767)
                      .|..|.....+.+.|.
T Consensus        82 ~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           82 KNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCcEeEEEEEEEE
Confidence            9999987766666553

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.13  E-value=2.6e-06  Score=73.71  Aligned_cols=85  Identities=24%  Similarity=0.334  Sum_probs=64.6

Q ss_pred             Cccceeeccccccccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .+....+.+|+.+.|.|.+.+. |.+.+.|++++..+......       ....   ......|.|.++...|.|.|.|.
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~-------~~~~---~~~~~~L~i~~v~~~D~G~Y~C~   76 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKY-------EITY---EDGVAILYVKDITKLDDGTYRCK   76 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSE-------EEEE---ETTEEEEEECSCCGGGCEEEEEE
T ss_pred             cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCE-------EEEE---cCCeEEEEEecCChhhCeEEEEE
Confidence            3446778899999999999997 99999999988766432211       1110   11245799999999999999999


Q ss_pred             eccCCCCcccceEEEE
Q psy12044        339 AENQAGSTSSNYTIRI  354 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V  354 (767)
                      +.|..|.....+.+.|
T Consensus        77 a~n~~g~~~~~~~l~V   92 (97)
T 2bk8_A           77 VVNDYGEDSSYAELFV   92 (97)
T ss_dssp             EECSSCEEEEEEEEEE
T ss_pred             EECCCCeEeEEEEEEE
Confidence            9999998777665554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.13  E-value=1.1e-05  Score=88.00  Aligned_cols=124  Identities=20%  Similarity=0.271  Sum_probs=56.5

Q ss_pred             CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEe
Q psy12044         74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE  153 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  153 (767)
                      +.+|+.+.+.. .+..+...+|.++.+|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.
T Consensus       216 ~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          216 GKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred             ccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence            34444444432 233344444444555555554333 44444444444555555544322 4444444455555555555


Q ss_pred             ccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCC-CCCcccccC
Q psy12044        154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL-PTGLHGIDL  201 (767)
Q Consensus       154 Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~-~~~L~~L~L  201 (767)
                      |.++.++.+...+|.++.+|+.+.|.. .++.|....|. ..+|+.+.|
T Consensus       293 l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          293 MDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred             ccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence            544445444444555555555555432 24444443332 244444444

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.10  E-value=2.1e-06  Score=74.59  Aligned_cols=83  Identities=20%  Similarity=0.418  Sum_probs=62.1

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.+.+.|.+++..+......    .....     ....+.|.|.++...|.|.|.|.+.|.
T Consensus        17 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~----~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~N~   87 (100)
T 3caf_A           17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI----GGYKV-----RNQHWSLIMESVVPSDKGNYTCVVENE   87 (100)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGST----TCCEE-----EGGGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEecCCCEEEEEEEccccCCCEEEEEECCEEccccccc----ccEEE-----ecCeEEEEEccCCcCCCEEEEEEEEeC
Confidence            456788999999999999999999999988766432211    00000     112357999999999999999999999


Q ss_pred             CCCcccceEEEE
Q psy12044        343 AGSTSSNYTIRI  354 (767)
Q Consensus       343 ~G~s~~s~sL~V  354 (767)
                      .|.....+.+.|
T Consensus        88 ~g~~~~~~~l~V   99 (100)
T 3caf_A           88 YGSINHTYHLDV   99 (100)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            988766555543

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.09  E-value=2.6e-06  Score=78.44  Aligned_cols=85  Identities=19%  Similarity=0.318  Sum_probs=63.0

Q ss_pred             ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecc--cCcceeeeEEEEeeeccCCCCceeEeeccCCCC
Q psy12044        268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE--EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS  345 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~--~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~  345 (767)
                      .+..+.|.|.+.|.|.|.|+|+++|..+......    . .....  .+.....+.|.|.++...|.|.|+|.|.|..|.
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~----~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~   88 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFI----F-TEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ   88 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSE----E-EEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCce----e-EEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCe
Confidence            4556789999999999999999999888654321    0 11111  111223578999999999999999999999999


Q ss_pred             cccceEEEEEee
Q psy12044        346 TSSNYTIRIVLK  357 (767)
Q Consensus       346 s~~s~sL~V~~~  357 (767)
                      ....+.+.|...
T Consensus        89 ~~~t~~l~v~~~  100 (126)
T 1he7_A           89 ASASIMAAFMDN  100 (126)
T ss_dssp             EEEEEEECCCSC
T ss_pred             EEEEEEEEEEcC
Confidence            877776666543

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=3e-06  Score=73.27  Aligned_cols=75  Identities=28%  Similarity=0.511  Sum_probs=58.5

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|..+.|.|.+.+.|.+.+.|++++..+...                   ....|.|.++...|.|.|.|.+.|
T Consensus        18 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~-------------------~~~~L~i~~v~~~d~G~Y~C~a~n   78 (96)
T 2ens_A           18 EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-------------------PSPVLILPEIGPQDQGTYSCVATH   78 (96)
T ss_dssp             TTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC-------------------CCSEEEEESCCTTTCEEEECEECC
T ss_pred             CCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC-------------------CCCEEEECCCCcccCEEEEEEEEe
Confidence            3456789999999999999999999999987665322                   124799999999999999999999


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      ..|....+..+.+.
T Consensus        79 ~~~~~~~s~~~~v~   92 (96)
T 2ens_A           79 SSHGPQESRAVSIS   92 (96)
T ss_dssp             SSCCCEECCCEEEE
T ss_pred             CCCCcEEEEEEEEE
Confidence            76655444444443

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.07  E-value=5.6e-06  Score=72.48  Aligned_cols=96  Identities=14%  Similarity=0.258  Sum_probs=63.6

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCe-eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV-PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~-~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      +...+....+.+|+.+.|.|.+.+.+.+.+.|.+++. .+............+.....  ......|.|.++..+|.|.|
T Consensus         9 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~D~G~Y   86 (108)
T 3m45_A            9 QFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA--SWHELSISVSDVSLSDEGQY   86 (108)
T ss_dssp             CCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEE--SSSEEEEEECSCCGGGCEEE
T ss_pred             ccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeec--CCCcEEEEECCCChhHCeEE
Confidence            3344556788899999999999999999999998664 22111100000011111111  11456899999999999999


Q ss_pred             eEeeccCCCCcccceEEEEE
Q psy12044        336 VCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       336 ~CvA~N~~G~s~~s~sL~V~  355 (767)
                      .|.+.| .|.....+.+.|.
T Consensus        87 ~C~~~n-~~~~~~~~~L~V~  105 (108)
T 3m45_A           87 TCSLFT-MPVKTSKAYLTVL  105 (108)
T ss_dssp             EEEECS-SSCEEEEEEEEEE
T ss_pred             EEEEEc-CCCcEEEEEEEEE
Confidence            999999 7766666555554

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=7.8e-06  Score=74.39  Aligned_cols=93  Identities=15%  Similarity=0.222  Sum_probs=64.3

Q ss_pred             Cccceeeccccccccccccccc---CCCcEEEeecCeeccCCCcccccccceeec---ccCcceeeeEEEEeeeccCCCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPIQNESMSASESHAVYST---EEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~---P~p~itW~~~g~~l~~~s~~~~~~~~~~~~---~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      .+..+.+.+|+.+.|.|.+.+.   |.|.+.|+++........   ...+ +.+.   .........+|.|.++...|.|
T Consensus        18 ~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   93 (118)
T 2edn_A           18 KPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSK---SGAR-FSFKESHNSASNVYTVELHIGKVVLGDRG   93 (118)
T ss_dssp             CCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCS---TTSS-CEEEEEECSSSCEEEEEEEESSCCTTTCS
T ss_pred             CCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCC---CccE-EEeccccccccccceEEEEEeeCChhhCE
Confidence            3456788999999999999774   799999998641111100   0001 1111   1111224578999999999999


Q ss_pred             ceeEeeccCCCCcccceEEEEEe
Q psy12044        334 TFVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       334 tY~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      .|.|.+.|..|...+.+.|.|..
T Consensus        94 ~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           94 YYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             CEEEEEECSSCEEEEEECCEEEC
T ss_pred             EEEEEEEEcCCcEEEEEEEEEEc
Confidence            99999999999877777776654

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.06  E-value=8.4e-06  Score=71.52  Aligned_cols=85  Identities=19%  Similarity=0.408  Sum_probs=61.4

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +........+.+|+.+.|.|.+  .|.+.+.|++++..+.....       +.....+   ....|.|.++..+|.|.|.
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r-------~~i~~~~---~~~~L~I~~v~~~D~G~Y~   77 (100)
T 2yuz_A           10 ILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDR-------LKVVQKG---RIHKLVIANALTEDEGDYV   77 (100)
T ss_dssp             CSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSS-------EEEEECS---SEEEEEESSCCGGGCSEEE
T ss_pred             EeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCc-------EEEEEeC---CEEEEEECCCChhhCEEEE
Confidence            3344456788899999999999  88999999999987753321       1111111   2357999999999999999


Q ss_pred             EeeccCCCCcccceEEEEE
Q psy12044        337 CVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V~  355 (767)
                      |.|.|.  .....+.|.|.
T Consensus        78 C~a~N~--~~~~~a~L~V~   94 (100)
T 2yuz_A           78 FAPDAY--NVTLPAKVHVI   94 (100)
T ss_dssp             EEESSS--CCCEEEEEEEE
T ss_pred             EEEcCC--CeeEEEEEEEe
Confidence            999997  33445555554

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.05  E-value=6.6e-06  Score=75.76  Aligned_cols=96  Identities=14%  Similarity=0.215  Sum_probs=67.6

Q ss_pred             CCCCccceeeccccccccccccccc---CCCcEEEeecCeeccCCCcccccccceeec---ccCcceeeeEEEEeeeccC
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVPIQNESMSASESHAVYST---EEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~---P~p~itW~~~g~~l~~~s~~~~~~~~~~~~---~~g~~~~~s~L~I~nvs~s  330 (767)
                      +...+..+.+.+|+.++|.|.+.+.   |.|.+.|+++........   ...+ +.+.   ..........|.|.++...
T Consensus        10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~   85 (126)
T 2dav_A           10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASK---AGKH-LQLKETFERHSRVYTFEMQIIKAKDN   85 (126)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHH---TTSS-EEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred             EEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCC---CCce-EEEccccccccccceEEEEEccCCcc
Confidence            3344566788999999999998764   899999999631110000   0001 1111   1111223578999999999


Q ss_pred             CCCceeEeeccCCCCcccceEEEEEe
Q psy12044        331 DNGTFVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       331 D~GtY~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      |.|.|.|.+.|..|...+.+.|.|..
T Consensus        86 DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           86 FAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             cCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            99999999999999999999998887

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.04  E-value=5.2e-06  Score=70.96  Aligned_cols=68  Identities=19%  Similarity=0.432  Sum_probs=56.3

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +....+..|+.+.|.|.+.+.|.+.+.|.+++..+....                   ...|.|.++..+|.|.|.|.+.
T Consensus        10 p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-------------------~~~L~i~~v~~~d~G~Y~C~a~   70 (91)
T 3bfo_A           10 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------------KKLYMVPYVDLEHQGTYWCHVY   70 (91)
T ss_dssp             CCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC-------------------SSEEEESSCCGGGCEEEEEEEE
T ss_pred             CCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC-------------------CCeEEECCCCHHhCEEEEEEEE
Confidence            334567899999999999999999999999887654321                   2478999999999999999999


Q ss_pred             cCCCCcc
Q psy12044        341 NQAGSTS  347 (767)
Q Consensus       341 N~~G~s~  347 (767)
                      |..|...
T Consensus        71 n~~g~~~   77 (91)
T 3bfo_A           71 NDRDSQD   77 (91)
T ss_dssp             CSSCEEE
T ss_pred             cCCCCEE
Confidence            9998644

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.04  E-value=3.4e-06  Score=73.97  Aligned_cols=98  Identities=22%  Similarity=0.322  Sum_probs=65.0

Q ss_pred             CCCCCCccceeeccccccccccccccc--CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~--P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      |.+...+....+..|..+.|.|.+.+.  +.+.+.|.+++..+........  ..+...........+.|.|.++...|.
T Consensus        11 P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~   88 (112)
T 3so5_A           11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENY--AHLRAQGGELMEYTTILRLRNVEFTSE   88 (112)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEE--EETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred             CeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccce--eeeeccCCCccccceEEEEeccccccC
Confidence            334444555678899999999999855  4689999998877654321100  000111111223357899999999999


Q ss_pred             CceeEeeccCCCCc-ccceEEEE
Q psy12044        333 GTFVCVAENQAGST-SSNYTIRI  354 (767)
Q Consensus       333 GtY~CvA~N~~G~s-~~s~sL~V  354 (767)
                      |.|.|.+.|..|.. ...+.+.|
T Consensus        89 G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           89 GXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEEEEeCCCcEEEeEEEEEe
Confidence            99999999998873 34554443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.03  E-value=9e-07  Score=87.12  Aligned_cols=111  Identities=14%  Similarity=0.073  Sum_probs=55.4

Q ss_pred             CCCccEEEccCC-CCCcc----CcccccCCCCCCEEEccCCCCCCCC----CCCCCCCCCCcEEECCCCcCcccc----c
Q psy12044         74 LVNLQKIYLSRC-RISVI----DSKAFRGLTNLVDLDFSHNVLQTVP----SDTFPDYPSLMKLTLSGNPIKQIK----T  140 (767)
Q Consensus        74 L~~L~~L~Ls~N-~L~~i----~p~~f~~L~~L~~L~Ls~N~Lt~l~----p~~f~~l~~L~~L~Ls~N~l~~l~----~  140 (767)
                      .++|+.|+|++| .|...    ....+...++|++|+|++|.|....    ...+...++|+.|+|++|.|....    .
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            456666666666 65542    2233445556666666666654321    112223345666666666655421    2


Q ss_pred             CCcCCCCCccEEec--cCCCccccc----hhhhcCCCCCCeeeccCCccc
Q psy12044        141 GAFQPLSYLVTLEL--SKCGIEVIE----DAAFVGLDSLEWLKLDNNKIT  184 (767)
Q Consensus       141 ~~~~~l~~L~~L~L--s~N~L~~i~----~~~~~~l~~L~~L~Ls~N~Lt  184 (767)
                      ..+....+|+.|+|  ++|.|....    ...+...++|+.|+|++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            23444455666666  556555432    123333455555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.02  E-value=3.6e-06  Score=91.90  Aligned_cols=132  Identities=16%  Similarity=0.161  Sum_probs=92.6

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCccccc--CCCCCCEEEccC--CCCCC------CCCC
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFR--GLTNLVDLDFSH--NVLQT------VPSD  117 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~--~L~~L~~L~Ls~--N~Lt~------l~p~  117 (767)
                      +++|+.|+|++|.-..+.+  +.   +++|+.|+|..|.+.......+.  .+++|+.|+|+.  |...+      +.+ 
T Consensus       171 ~P~L~~L~L~g~~~l~l~~--~~---~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-  244 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLSIGK--KP---RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-  244 (362)
T ss_dssp             CTTCCEEEEECCBTCBCCS--CB---CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-
T ss_pred             CCCCcEEEEeCCCCceecc--cc---CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-
Confidence            4789999999984122322  32   68999999999988765444444  789999999863  22111      111 


Q ss_pred             CC--CCCCCCcEEECCCCcCcccccCCc---CCCCCccEEeccCCCccccchh----hhcCCCCCCeeeccCCcccc
Q psy12044        118 TF--PDYPSLMKLTLSGNPIKQIKTGAF---QPLSYLVTLELSKCGIEVIEDA----AFVGLDSLEWLKLDNNKITT  185 (767)
Q Consensus       118 ~f--~~l~~L~~L~Ls~N~l~~l~~~~~---~~l~~L~~L~Ls~N~L~~i~~~----~~~~l~~L~~L~Ls~N~Lt~  185 (767)
                      .+  ..+++|+.|+|.+|.+.......+   ..+++|+.|+|+.|.|++....    .+..+++|+.|+|++|.|+.
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            12  247899999999999874322122   2478999999999999875332    33557899999999998874

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.01  E-value=3e-06  Score=80.32  Aligned_cols=94  Identities=22%  Similarity=0.416  Sum_probs=69.7

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+........+..|..+.|.|.+.+.|.+.+.|++++..+.....       +.....  ......|.|.++...|.|.
T Consensus        42 P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-------~~~~~~--~~~~~~L~I~~v~~~D~G~  112 (154)
T 1fhg_A           42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH-------FQIDYD--EEGNCSLTISEVCGDDDAK  112 (154)
T ss_dssp             EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSS-------EEEEEC--TTCEEEEEESSCCGGGCEE
T ss_pred             CeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCc-------EEEEEC--CCCeEEEEECCCChhcCEE
Confidence            3333344457788999999999999999999999999877653221       111100  1124689999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEee
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      |.|.+.|..|.....+.+.|...
T Consensus       113 Y~C~a~N~~G~~~~~~~l~V~~~  135 (154)
T 1fhg_A          113 YTCKAVNSLGEATCTAELLVETM  135 (154)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEEECCCeEEEEEEEEEeCc
Confidence            99999999998877777766543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.99  E-value=1.6e-05  Score=87.51  Aligned_cols=136  Identities=18%  Similarity=0.323  Sum_probs=75.2

Q ss_pred             CCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccC
Q psy12044         62 KTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTG  141 (767)
Q Consensus        62 ~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~  141 (767)
                      ..+....|.  ++.+|+.+.|.++ +..+...+|.++.+|+.+.+. +.++.+...+|.++.+|+.+.|..+ ++.+...
T Consensus       254 ~~i~~~aF~--~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~  328 (394)
T 4gt6_A          254 ARIETHAFD--SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD  328 (394)
T ss_dssp             EEECTTTTT--TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             eEcccceee--ecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence            334444554  3566666666543 334555666666677776664 4566666666766777777776643 6666666


Q ss_pred             CcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCC
Q psy12044        142 AFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNP  205 (767)
Q Consensus       142 ~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~  205 (767)
                      +|.++.+|+.+.|..+ ++.+...+|.++.+|+.+++.+|....  ..++....|+.|.+..|.
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred             HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence            6776777777766533 666666667777777777766654321  122334455555555443

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=97.99  E-value=5.5e-06  Score=74.78  Aligned_cols=92  Identities=16%  Similarity=0.267  Sum_probs=62.8

Q ss_pred             eeeccccccccccccccc--CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        264 LEIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~--P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      +.+.+|+.+.|.|.+.+.  +.+.+.|.+++..+......... . ............+.|.|.++..+|.|.|+|.|.|
T Consensus        18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   95 (122)
T 3s35_X           18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD-L-KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS   95 (122)
T ss_dssp             EEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCS-C-CEEEETTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             EEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeec-c-ccccCCceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence            467889999999999984  45688999977643211000000 0 0111111123456899999999999999999999


Q ss_pred             CCCCcccceEEEEEee
Q psy12044        342 QAGSTSSNYTIRIVLK  357 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~~  357 (767)
                      ..|.....+.+.|..+
T Consensus        96 ~~g~~~~~~~l~V~~~  111 (122)
T 3s35_X           96 GLMTKKNSTFVRVHEK  111 (122)
T ss_dssp             SSCEEEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEEecc
Confidence            9998887777766543

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.95  E-value=5.8e-06  Score=72.03  Aligned_cols=80  Identities=21%  Similarity=0.446  Sum_probs=60.0

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +....+..|..+.|.|.+.+.| |.+.|.+++..+.....       +..       ....|.|.++...|.|.|.|.+.
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~-------~~~-------~~~~L~i~~v~~~D~G~Y~C~a~   74 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNR-------TRI-------TGEEVEVQDSVPADSGLYACVTS   74 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSS-------EEE-------CSSEEEETTCCTTTCEEEEEEEE
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCc-------EEE-------ECCEEEEccCCHHHCEEEEEEEE
Confidence            3456678899999999999987 79999998866533211       111       13579999999999999999999


Q ss_pred             cCCCCcccceEEEEE
Q psy12044        341 NQAGSTSSNYTIRIV  355 (767)
Q Consensus       341 N~~G~s~~s~sL~V~  355 (767)
                      |..|.....+.+.|.
T Consensus        75 n~~g~~~~~~~l~V~   89 (99)
T 2cr3_A           75 SPSGSDTTYFSVNVS   89 (99)
T ss_dssp             ETTEEEEEEEEECBC
T ss_pred             eCCceEEEEEEEEEe
Confidence            999886555544443

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=97.91  E-value=1.3e-05  Score=68.99  Aligned_cols=78  Identities=21%  Similarity=0.363  Sum_probs=59.5

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|+.+.|.|.+.+  .|.+.|.+++..+......       ..       ..+.|.|.++..+|.|.|.|.+.|
T Consensus         9 ~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~-------~~-------~~~~L~i~~~~~~D~G~Y~C~a~n   72 (95)
T 4hwu_A            9 EAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRT-------VL-------IGEYLQIKGATPRDSGLYACTAAR   72 (95)
T ss_dssp             EEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSE-------EE-------ETTEEEECSCCGGGCEEEEEEEEC
T ss_pred             CcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceE-------EE-------eCCEEEECcCCcccCEEEEEEEcc
Confidence            3567789999999999987  5799999988776432211       11       134799999999999999999999


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      ..|.....+.+.|.
T Consensus        73 ~~g~~~~~~~l~V~   86 (95)
T 4hwu_A           73 TVDSETWIFMVNVT   86 (95)
T ss_dssp             SSCEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEe
Confidence            99876666655544

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=97.90  E-value=1e-05  Score=69.93  Aligned_cols=78  Identities=19%  Similarity=0.290  Sum_probs=59.1

Q ss_pred             cceeeccccccccccccc-ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ....+..|+.+.|.|.+. +.|.+.+.|.+++.......               .....+.|.|.++..+|.|.|.|.+.
T Consensus        18 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~---------------~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (98)
T 1gl4_B           18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR---------------AMDFNGILTIRNVQPSDAGTYVCTGS   82 (98)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT---------------EEEETTEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce---------------eecCCCEEEEeCCChhhCEEEEEEec
Confidence            345788999999999998 68999999998643221110               01123479999999999999999999


Q ss_pred             cCCCCcccceEEEE
Q psy12044        341 NQAGSTSSNYTIRI  354 (767)
Q Consensus       341 N~~G~s~~s~sL~V  354 (767)
                      |..|.....+.+.|
T Consensus        83 n~~g~~~~~~~l~V   96 (98)
T 1gl4_B           83 NMFAMDQGTATLHV   96 (98)
T ss_dssp             CSSCEEEEEEEEEE
T ss_pred             CCCCccccEEEEEE
Confidence            99998776665554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.87  E-value=2.4e-06  Score=89.15  Aligned_cols=81  Identities=26%  Similarity=0.260  Sum_probs=55.5

Q ss_pred             cCCCCCCEEEccCCCCCCCC--CCCCCCCCCCcEEECCCCcCccccc-CCcCCCCCccEEeccCCCccccch-------h
Q psy12044         96 RGLTNLVDLDFSHNVLQTVP--SDTFPDYPSLMKLTLSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIED-------A  165 (767)
Q Consensus        96 ~~L~~L~~L~Ls~N~Lt~l~--p~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~-------~  165 (767)
                      .++++|+.|+|++|+|+++.  +..+..+++|+.|+|++|.|+++.. ..+..+ +|+.|+|++|.|.+..+       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            45778888888888888754  3445577888888888888887622 223333 78888888888775322       3


Q ss_pred             hhcCCCCCCeee
Q psy12044        166 AFVGLDSLEWLK  177 (767)
Q Consensus       166 ~~~~l~~L~~L~  177 (767)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            456677777766

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=97.87  E-value=1.2e-05  Score=73.13  Aligned_cols=94  Identities=13%  Similarity=0.264  Sum_probs=63.2

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccC-CCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQN-ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~-~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .+..+.+.+|+.++|.|.+.+.+.+.+.|...+..+.. ..........+....  .......|.|.++..+|.|.|.|.
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~   84 (124)
T 3rbg_A            7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH--HSANQLSITVPNVTLQDEGVYKCL   84 (124)
T ss_dssp             SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEE--EETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEe--CCCCEEEEEECCCChHHCEEEEEE
Confidence            44567788999999999999999999999975432211 000000001111111  122346899999999999999999


Q ss_pred             eccCCCCcccceEEEEEe
Q psy12044        339 AENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~  356 (767)
                      +.|. |.....+.+.|..
T Consensus        85 a~n~-g~~~~~~~l~V~~  101 (124)
T 3rbg_A           85 HYSD-SVSTKEVKVIVLA  101 (124)
T ss_dssp             EESS-SEEEEEEEEEEEC
T ss_pred             EEcC-CCCcEEEEEEEEe
Confidence            9998 7776666666654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.87  E-value=1.7e-05  Score=67.44  Aligned_cols=69  Identities=19%  Similarity=0.430  Sum_probs=52.6

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      .+.+..|+.+.|.|.+.+ |.|.+.|++++..+......       .....+   ....|.|.++..+|.|.|.|.|.|.
T Consensus         5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~-------~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~n~   73 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRV-------QLEQAG---ARQVLRVQGARSGDAGEYLCDAPQD   73 (84)
T ss_dssp             CEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSE-------EEEECS---SCEEEEESSCSSTTCEEEEEECTTT
T ss_pred             EEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccE-------EEeecC---CeEEEEecCCCCcccEEEEEEECCE
Confidence            467789999999999876 99999999999887543221       111111   2357999999999999999998653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.87  E-value=1.4e-06  Score=85.82  Aligned_cols=118  Identities=12%  Similarity=0.071  Sum_probs=88.9

Q ss_pred             cccccCCCCCCEEEccCC-CCCCC----CCCCCCCCCCCcEEECCCCcCcccc----cCCcCCCCCccEEeccCCCcccc
Q psy12044         92 SKAFRGLTNLVDLDFSHN-VLQTV----PSDTFPDYPSLMKLTLSGNPIKQIK----TGAFQPLSYLVTLELSKCGIEVI  162 (767)
Q Consensus        92 p~~f~~L~~L~~L~Ls~N-~Lt~l----~p~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~L~~i  162 (767)
                      ...+...++|++|+|++| .|...    ....+...++|++|+|++|.|....    ...+...++|+.|+|++|.|...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            456778899999999999 88742    2234566789999999999997532    23345568899999999999865


Q ss_pred             c----hhhhcCCCCCCeeec--cCCcccc-----ccCCCCCCCCcccccCCCCCCCch
Q psy12044        163 E----DAAFVGLDSLEWLKL--DNNKITT-----ISGSNILPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       163 ~----~~~~~~l~~L~~L~L--s~N~Lt~-----ip~~~~~~~~L~~L~Ls~N~l~C~  209 (767)
                      .    ..++....+|+.|+|  ++|.|+.     +...+....+|+.|+|++|.+...
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            3    455677889999999  8899974     222222347899999999987643

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.86  E-value=5e-05  Score=66.35  Aligned_cols=84  Identities=24%  Similarity=0.311  Sum_probs=59.3

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ......+.+|+.+.|.|.+.+ +.+.+.|++++..+......     .+.....+   ....|.|.++..+|.|.|.|.+
T Consensus        13 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~-----~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a   83 (103)
T 1x44_A           13 QLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKS-----RYRIRVEG---KKHILIIEGATKADAAEYSVMT   83 (103)
T ss_dssp             CCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTC-----SEEEEEET---TEEEEEEEEECTTTCSEEEEEE
T ss_pred             cCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCce-----EEEEEEcC---CEEEEEECCCCcccCEEEEEEE
Confidence            344567889999999999987 77999999998776543211     11111111   2467999999999999999999


Q ss_pred             ccCCCCcccceEEEEEe
Q psy12044        340 ENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~~  356 (767)
                      .|    ....+.+.|..
T Consensus        84 ~n----~~~~~~l~V~~   96 (103)
T 1x44_A           84 TG----GQSSAKLSVDL   96 (103)
T ss_dssp             TT----EEEEEEEEEEC
T ss_pred             CC----CcEEEEEEEeC
Confidence            87    34445555544

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=97.86  E-value=7.4e-06  Score=75.75  Aligned_cols=97  Identities=19%  Similarity=0.248  Sum_probs=66.1

Q ss_pred             cCCCCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCccc-cc--ccceeecccCcceeeeEEEEeeec
Q psy12044        252 ACEPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA-SE--SHAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       252 ~C~P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~-~~--~~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      .+.|.+...+....+..|..+.|.|.+.+.|.|.+.|.+++..+....... ..  ...+...........+.|.|.++.
T Consensus        19 ~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   98 (137)
T 3qr2_A           19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLV   98 (137)
T ss_dssp             --CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCC
T ss_pred             CCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCC
Confidence            345666666677788899999999999999999999999765443211000 00  001111111112245789999999


Q ss_pred             cCCCCceeEeeccCCCCccc
Q psy12044        329 IDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       329 ~sD~GtY~CvA~N~~G~s~~  348 (767)
                      .+|.|.|.|.|.|..|....
T Consensus        99 ~~D~G~Y~C~a~N~~G~~~~  118 (137)
T 3qr2_A           99 EEDTGTYECRASNDPDRNHL  118 (137)
T ss_dssp             GGGCEEEEEEEECCTTSSSC
T ss_pred             cccCEEEEEEEEecCCccce
Confidence            99999999999999998754

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=97.84  E-value=9.8e-06  Score=72.57  Aligned_cols=91  Identities=25%  Similarity=0.432  Sum_probs=59.3

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+....... ... .....++. .....+.+.++...|.|.
T Consensus        10 P~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~-~~~~~~~~-~~~~~i~~~~v~~~D~G~   86 (117)
T 2v9t_A           10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDP-RSH-RMLLPSGS-LFFLRIVHGRKSRPDEGV   86 (117)
T ss_dssp             EEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCS-SCS-EEECTTSC-EEESSCCCBTTBCSSCEE
T ss_pred             CeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCC-cce-eEEecCCc-EEEEEEEeCCCCcCcCEE
Confidence            333334445678899999999999999999999999987765432110 000 11111111 111123333567899999


Q ss_pred             eeEeeccCCCCccc
Q psy12044        335 FVCVAENQAGSTSS  348 (767)
Q Consensus       335 Y~CvA~N~~G~s~~  348 (767)
                      |.|.|.|..|...+
T Consensus        87 Y~C~a~N~~G~~~s  100 (117)
T 2v9t_A           87 YVCVARNYLGEAVS  100 (117)
T ss_dssp             EEEEEEETTEEEEC
T ss_pred             EEEEEEeCccceEe
Confidence            99999999998765

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=97.83  E-value=1.3e-05  Score=72.15  Aligned_cols=81  Identities=21%  Similarity=0.364  Sum_probs=59.4

Q ss_pred             ccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccc
Q psy12044        270 KNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN  349 (767)
Q Consensus       270 ~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s  349 (767)
                      ....+.|.+.+.|.|.+.|.+++..+......     ....... .....+.|.|.++...|.|.|.|.|.|..|...+.
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-----~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~   94 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKII-----HVEYYQE-GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT   94 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSE-----EEEEEEC-SSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCCce-----eEEEecc-CccccEEEEECCCChhcCEEEEEEEECCCCeEeeE
Confidence            34567899999999999999998877543321     1111111 11345689999999999999999999999988777


Q ss_pred             eEEEEEe
Q psy12044        350 YTIRIVL  356 (767)
Q Consensus       350 ~sL~V~~  356 (767)
                      +.+.|..
T Consensus        95 ~~l~v~~  101 (118)
T 1wwc_A           95 INGHFLK  101 (118)
T ss_dssp             EEECCSC
T ss_pred             EEEEEcc
Confidence            7665544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.81  E-value=5.2e-05  Score=83.28  Aligned_cols=146  Identities=21%  Similarity=0.309  Sum_probs=103.7

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL  128 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L  128 (767)
                      .+|+.+.+.. .++.+....|.  ++.+|+.+.+..+ +..+...+|..+..|+.+.+..+.   +....|..+.+|+.+
T Consensus       230 ~~l~~i~ip~-~~~~i~~~~f~--~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i  302 (394)
T 4fs7_A          230 TGVKNIIIPD-SFTELGKSVFY--GCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEV  302 (394)
T ss_dssp             CCCCEEEECT-TCCEECSSTTT--TCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEE
T ss_pred             CCCceEEECC-Cceeccccccc--ccccceeEEcCCC-cceeeccccccccccceeccCcee---ecccccccccccccc
Confidence            4567777753 45566666666  3788888888765 344556778888888888776654   334567778888888


Q ss_pred             ECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCC-CCCcccccCCCC
Q psy12044        129 TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL-PTGLHGIDLHHN  204 (767)
Q Consensus       129 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~-~~~L~~L~Ls~N  204 (767)
                      .+..+ ++.+...+|.++.+|+.++|.. .++.+...+|.++.+|+.++|..| ++.|....|. ..+|+.++|..+
T Consensus       303 ~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          303 KLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            88654 7777777888888888888864 377777778888888888888765 7777766654 467777777543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.80  E-value=9.8e-05  Score=80.40  Aligned_cols=135  Identities=22%  Similarity=0.331  Sum_probs=77.7

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT  129 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~  129 (767)
                      +++.+.+.. .+..+....|.  ++.+|+.+.+..+ ++.+...+|.++.+|+.+.+.. .++.+....|.++.+|+.+.
T Consensus       218 ~l~~i~~~~-~~~~i~~~~f~--~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          218 NLKKITITS-GVTTLGDGAFY--GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             SCSEEECCT-TCCEECTTTTT--TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEE
T ss_pred             ccceeeecc-ceeEEcccccc--CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccc
Confidence            344444432 24444444444  2556666666543 5555556666666666666643 35555556666666666666


Q ss_pred             CCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC
Q psy12044        130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI  191 (767)
Q Consensus       130 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~  191 (767)
                      +.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.|..+ ++.|....|
T Consensus       293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF  352 (379)
T 4h09_A          293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF  352 (379)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence            6666666666666666666666666533 55666666666666666666433 555544443

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.80  E-value=4.1e-05  Score=66.90  Aligned_cols=78  Identities=21%  Similarity=0.436  Sum_probs=57.6

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|+.+.|.|.+.+.+.+ +.|++++..+......       .....   .....|.|.++..+|.|.|.|.+.|..
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~-------~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~n~~   88 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELL-------VVKMD---GRKHRLILPEAKVQDSGEFECRTEGVS   88 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTB-------EEEEE---TTEEEEEESSCCTTTCEEEEEECSSCC
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCE-------EEEeC---CCEEEEEECCCChhhCEEEEEEECCce
Confidence            677899999999999999999 9999998776532211       11111   124579999999999999999999874


Q ss_pred             CCcccceEEEEEe
Q psy12044        344 GSTSSNYTIRIVL  356 (767)
Q Consensus       344 G~s~~s~sL~V~~  356 (767)
                      +    .+.+.|..
T Consensus        89 ~----~~~l~V~~   97 (104)
T 2e6p_A           89 A----FFGVTVQD   97 (104)
T ss_dssp             C----CEEEEEEC
T ss_pred             E----EEEEEEcC
Confidence            3    45555544

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=97.77  E-value=4.8e-06  Score=75.38  Aligned_cols=90  Identities=19%  Similarity=0.198  Sum_probs=64.3

Q ss_pred             ccceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeec-ccCcceeeeEEEEeeeccCCC-CceeE
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYST-EEGTEIKKSELLIYNSNIDDN-GTFVC  337 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~-~~g~~~~~s~L~I~nvs~sD~-GtY~C  337 (767)
                      .....+.+|+.+.|.|.+.+.|.|. +.|.+++..+.....     ..+... ........+.|.|.++..+|. |.|.|
T Consensus        20 ~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C   94 (122)
T 2cry_A           20 TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS-----GRYTVETISTEEGVISTLTISNIVRADFQTIYNC   94 (122)
T ss_dssp             ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEE-----TTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEE
T ss_pred             CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCC-----CCEEEEEecCCCceEEEEEEcCCChhhCCceEEE
Confidence            3456678899999999999999997 999998876643110     111111 000112256899999999998 99999


Q ss_pred             eeccCCCCcccceEEEEE
Q psy12044        338 VAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       338 vA~N~~G~s~~s~sL~V~  355 (767)
                      .|.|..|.....+.+.|.
T Consensus        95 ~a~N~~G~~~~~~~l~V~  112 (122)
T 2cry_A           95 TAWNSFGSDTEIIRLKEQ  112 (122)
T ss_dssp             EEECSSCEEEEEECCCCS
T ss_pred             EEECCCCeEEEEEEEEEC
Confidence            999999988766555443

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.76  E-value=4.1e-05  Score=67.28  Aligned_cols=86  Identities=15%  Similarity=0.255  Sum_probs=60.3

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +........+..|+.+.|.|.+.+.+.+ +.|++++..+......       .....   .....|.|.++..+|.|.|.
T Consensus        11 ~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~-------~~~~~---~~~~~L~I~~v~~~D~G~Y~   79 (106)
T 2dlt_A           11 VLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRI-------TISHV---GRFHKLVIDDVRPEDEGDYT   79 (106)
T ss_dssp             EEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSC-------EEEEE---TTEEEEEESSCCTTTCSCEE
T ss_pred             EecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCE-------EEEEe---CCEEEEEECCCCcCCCEEEE
Confidence            3334456788899999999999998888 9999988766432211       11111   12357999999999999999


Q ss_pred             EeeccCCCCcccceEEEEE
Q psy12044        337 CVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V~  355 (767)
                      |.+.|.  .....+.+.|.
T Consensus        80 C~a~n~--~~~~~~~l~V~   96 (106)
T 2dlt_A           80 FVPDGY--ALSLSAKLNFL   96 (106)
T ss_dssp             EEEETS--CCCCCBCEEEE
T ss_pred             EEEccC--CceEEEEEEEE
Confidence            999998  33334444443

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.75  E-value=4.1e-05  Score=66.75  Aligned_cols=82  Identities=22%  Similarity=0.381  Sum_probs=58.5

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ......+..|+.+.|.|.+.+ +.+.+.|++++..+.....       +.....+   ....|.|.++...|.|.|.|.+
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~-------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a   82 (103)
T 2edf_A           14 PLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQK-------YDVVCEG---TMAMLVIRGASLKDAGEYTCEV   82 (103)
T ss_dssp             CCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSS-------EEEEEET---TEEEEEESSCCTTTCSEEEEEC
T ss_pred             cCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCC-------EEEEECC---CEEEEEECCCCcccCEEEEEEE
Confidence            344567889999999999997 8889999998876643221       1111111   1457999999999999999999


Q ss_pred             ccCCCCcccceEEEEEe
Q psy12044        340 ENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~~  356 (767)
                      .|    ....+.+.|..
T Consensus        83 ~n----~~~~~~l~V~~   95 (103)
T 2edf_A           83 EA----SKSTASLHVEE   95 (103)
T ss_dssp             SS----CEEEEEEEECC
T ss_pred             cc----CCcEEEEEEeC
Confidence            98    23445555543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=97.73  E-value=2.2e-05  Score=78.31  Aligned_cols=77  Identities=26%  Similarity=0.375  Sum_probs=61.7

Q ss_pred             eeeccccccccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+.+|..+.|.|.+.+. |.|.+.|++++..+......            ........|.|.++..+|.|.|+|.|.|.
T Consensus       126 ~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~------------~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  193 (207)
T 3rbs_A          126 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH------------DFKDGICTLLITEFSKKDAGIYEVILKDD  193 (207)
T ss_dssp             EEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCC------------CCSSEEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             cEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCce------------EcCCCEEEEEECCCCcccCEEEEEEEEcC
Confidence            567789999999999999 99999999999877543211            01123457999999999999999999999


Q ss_pred             CCCcccceEE
Q psy12044        343 AGSTSSNYTI  352 (767)
Q Consensus       343 ~G~s~~s~sL  352 (767)
                      .|...+.+.|
T Consensus       194 ~G~~~~~~~L  203 (207)
T 3rbs_A          194 RGKDKSRLKL  203 (207)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCEEEEEEEE
Confidence            9988776655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.70  E-value=1.3e-05  Score=83.50  Aligned_cols=79  Identities=24%  Similarity=0.282  Sum_probs=63.4

Q ss_pred             CCCCccEEEccCCCCCccC--cccccCCCCCCEEEccCCCCCCCCCCCCCCCC--CCcEEECCCCcCccccc-------C
Q psy12044         73 GLVNLQKIYLSRCRISVID--SKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYP--SLMKLTLSGNPIKQIKT-------G  141 (767)
Q Consensus        73 ~L~~L~~L~Ls~N~L~~i~--p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~--~L~~L~Ls~N~l~~l~~-------~  141 (767)
                      .+++|+.|+|++|+|+++.  +..+..+++|+.|+|++|.|+++.  .+..+.  +|+.|+|++|.+.+..+       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            3789999999999999964  466778999999999999999872  233444  99999999999986433       2


Q ss_pred             CcCCCCCccEEe
Q psy12044        142 AFQPLSYLVTLE  153 (767)
Q Consensus       142 ~~~~l~~L~~L~  153 (767)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            356678888886

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=97.69  E-value=3.4e-05  Score=66.72  Aligned_cols=72  Identities=22%  Similarity=0.384  Sum_probs=53.7

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ......+.+|+.+.|.|.+.+ +.+.+.|++++..+.....       +.....+   ....|.|.++..+|.|.|.|.|
T Consensus        11 ~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~-------~~i~~~g---~~~~L~I~~v~~~D~G~Y~C~a   79 (93)
T 1waa_A           11 PLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPD-------CEIIEDG---KKHILILHNCQLGMTGEVSFQA   79 (93)
T ss_dssp             CCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTT-------EEEEEET---TEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCC-------EEEEEEC---CEEEEEECCCChhhCEEEEEEE
Confidence            344567889999999999976 4588999999987754321       1111111   2357999999999999999999


Q ss_pred             ccC
Q psy12044        340 ENQ  342 (767)
Q Consensus       340 ~N~  342 (767)
                      .|.
T Consensus        80 ~n~   82 (93)
T 1waa_A           80 ANT   82 (93)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            884

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.69  E-value=0.00014  Score=79.75  Aligned_cols=124  Identities=19%  Similarity=0.260  Sum_probs=93.5

Q ss_pred             CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEe
Q psy12044         74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE  153 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  153 (767)
                      ..+|+.+.+.. .++.+...+|.++.+|+.+.+..+ +..+....|..+..|+.+.+..+.   +....|..+.+|+.+.
T Consensus       229 ~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~  303 (394)
T 4fs7_A          229 KTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVK  303 (394)
T ss_dssp             TCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEE
T ss_pred             cCCCceEEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccccccc
Confidence            46788888764 456666777888888998888765 445666778888888888877654   4456788888888888


Q ss_pred             ccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCC-CCCcccccCCCC
Q psy12044        154 LSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL-PTGLHGIDLHHN  204 (767)
Q Consensus       154 Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~-~~~L~~L~Ls~N  204 (767)
                      +..+ ++.+...+|.++.+|+.++|.. .++.|....|. ..+|+.+.|..|
T Consensus       304 l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          304 LLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             ECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc
Confidence            8654 7778888888888999888864 48888776664 478888888765

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=0.00014  Score=63.27  Aligned_cols=89  Identities=19%  Similarity=0.271  Sum_probs=63.2

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+........+.+|+.+.|.|. .+.|.+.+.|.+++..+.....       +....   ......|.|.++..+|.|.
T Consensus         9 p~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~-------~~~~~---~~~~~~L~I~~v~~~D~G~   77 (103)
T 2dku_A            9 NCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGK-------HQPSQ---EGLTLRLTISALEKADSDT   77 (103)
T ss_dssp             CCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSS-------EEEEE---ETTEEEEEEESCCTTTCSE
T ss_pred             CEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCe-------EEEEe---CCCEEEEEECCCCcccCEE
Confidence            44444455678899999999999 5888999999998876654321       11111   1123479999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEeec
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVLKE  358 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~~~  358 (767)
                      |.|.    .|.....+.+.|...+
T Consensus        78 Y~C~----~g~~~~~~~l~V~~~p   97 (103)
T 2dku_A           78 YTCD----IGQAQSRAQLLVQGRR   97 (103)
T ss_dssp             EEEE----CSSCBCCEEEEEECSC
T ss_pred             EEEE----eCCceEEEEEEEeCcc
Confidence            9998    5666666777766533

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=4.1e-05  Score=66.64  Aligned_cols=74  Identities=18%  Similarity=0.286  Sum_probs=54.0

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      .....+..|+.+.|.|.+.+.+ +.+.|++++..+........   .+.....   .....|.|.++..+|.|.|.|.+.
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~---~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~   87 (101)
T 2edk_A           15 LEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKA---RYRFKKD---GKRHILIFSDVVQEDRGRYQVITN   87 (101)
T ss_dssp             CCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSC---CCEEEEC---SSEEEEECSSCCGGGCSBEEEECS
T ss_pred             CCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcce---eEEEEEC---CCEEEEEECCCChhhCEEEEEEEc
Confidence            3456788999999999999998 99999998877654321100   1111111   124579999999999999999998


Q ss_pred             c
Q psy12044        341 N  341 (767)
Q Consensus       341 N  341 (767)
                      |
T Consensus        88 n   88 (101)
T 2edk_A           88 G   88 (101)
T ss_dssp             S
T ss_pred             C
Confidence            7

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.67  E-value=8.8e-05  Score=81.45  Aligned_cols=126  Identities=19%  Similarity=0.296  Sum_probs=97.1

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL  128 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L  128 (767)
                      ..|+.+.|.++ +..+....|.+  +.+|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+
T Consensus       265 ~~L~~i~lp~~-~~~I~~~aF~~--c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          265 AYLASVKMPDS-VVSIGTGAFMN--CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             SSCCEEECCTT-CCEECTTTTTT--CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccEEecccc-cceecCccccc--ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence            46788888654 45677777874  8999999996 6788888899999999999999754 888888999999999999


Q ss_pred             ECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcc
Q psy12044        129 TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKI  183 (767)
Q Consensus       129 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~L  183 (767)
                      .|..+ ++.+...+|.++.+|+.+++.++....   ..|.....|+.|.+..|.+
T Consensus       340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          340 AIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            99755 889999999999999999999875432   4577788899888877654

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=97.66  E-value=7.9e-05  Score=64.05  Aligned_cols=70  Identities=17%  Similarity=0.294  Sum_probs=52.1

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .......+..|..+.|.|.+ +.+.+.+.|++++..+.....       +.....+   ....|.|.++...|.|.|.|.
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~-------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~   81 (95)
T 2k1m_A           13 KKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNK-------YGLATEG---TRHTLTVREVGPADQGSYAVI   81 (95)
T ss_dssp             BCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTT-------CEEEEET---TEEEEEESSCCTTCCSEEEEE
T ss_pred             eCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCc-------EEEEEcC---CEEEEEEcCCCcccCEEEEEE
Confidence            33456678899999999999 788899999998876643221       1111111   135799999999999999999


Q ss_pred             e
Q psy12044        339 A  339 (767)
Q Consensus       339 A  339 (767)
                      +
T Consensus        82 a   82 (95)
T 2k1m_A           82 A   82 (95)
T ss_dssp             E
T ss_pred             E
Confidence            9

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.66  E-value=4.6e-05  Score=65.75  Aligned_cols=68  Identities=25%  Similarity=0.515  Sum_probs=51.2

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      +++.+|+.+.|.|.+.+ |.+.+.|++++..+......       .....+   ....|.|.++..+|.|.|.|.|.|.
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~-------~i~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFV-------VLENEG---PHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSC-------EEEEET---TEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeee-------eEEecC---CeEEEEeCCCChhhcEEEEEEEcce
Confidence            45678999999999866 88999999998877543221       111111   2357999999999999999999764

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=97.64  E-value=9.2e-05  Score=64.46  Aligned_cols=87  Identities=20%  Similarity=0.368  Sum_probs=61.0

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+........+.+|+.+.|.|.+.+.|.+ +.|++++..+.....       +.....   .....|.|.++..+|.|.
T Consensus         9 p~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~-------~~~~~~---~~~~~L~I~~v~~~D~G~   77 (103)
T 2e7b_A            9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDK-------YSLRQE---GAMLELVVRNLRPQDSGR   77 (103)
T ss_dssp             CCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSS-------EEEEEC---SSEEEEEECSCCTTTCCC
T ss_pred             CEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCc-------EEEEEc---CCEEEEEEccCCcccCEE
Confidence            334444556788899999999999999999 999998776642211       111111   124579999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEe
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      |.|.    .|.....+.+.|..
T Consensus        78 Y~C~----~g~~~~~~~l~V~~   95 (103)
T 2e7b_A           78 YSCS----FGDQTTSATLTVTA   95 (103)
T ss_dssp             EEEE----CSSCBCCBCEEEEC
T ss_pred             EEEE----ECCcEEEEEEEEEe
Confidence            9998    45555556665554

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=97.61  E-value=8.6e-05  Score=76.79  Aligned_cols=91  Identities=18%  Similarity=0.287  Sum_probs=67.7

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+.+|+.+.|.|.+.+.|.+.+.|.+++.........     .............+.|.|.++..+|.|.|.|.|.|.
T Consensus       190 ~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  264 (289)
T 3mjg_X          190 QTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEP-----VTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTES  264 (289)
T ss_dssp             CSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCC-----EEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEET
T ss_pred             cceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccc-----cccccCCcceEEEEEEEEcccChhhCcEEEEEeecC
Confidence            356789999999999999999999999866543221110     011111222445678999999999999999999999


Q ss_pred             CCCcccceEEEEEeec
Q psy12044        343 AGSTSSNYTIRIVLKE  358 (767)
Q Consensus       343 ~G~s~~s~sL~V~~~~  358 (767)
                      .|.......+.+...+
T Consensus       265 ~G~~~~~~~l~v~~~~  280 (289)
T 3mjg_X          265 VNDHQDEKAINITVVE  280 (289)
T ss_dssp             TTTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEEe
Confidence            9999988888877643

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.60  E-value=5.3e-05  Score=67.73  Aligned_cols=83  Identities=18%  Similarity=0.371  Sum_probs=60.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      .....+.+|+.+.|.|.+.+.|.|.+.|++++..+......       .....  ......|.|.++..+|.|.|.|.+ 
T Consensus        20 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~-------~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~-   89 (115)
T 2cr6_A           20 LEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELN-------EIDAQ--PGGYHVLTLRQLALKDSGTIYFEA-   89 (115)
T ss_dssp             CCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSC-------CBCCB--TTTBCCBEECSCCTTTCEEEEEEE-
T ss_pred             CccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcE-------EEEEc--CCCEEEEEEcCCChhhCEEEEEEE-
Confidence            34567889999999999999999999999998776543221       00000  112346999999999999999994 


Q ss_pred             cCCCCcccceEEEEEe
Q psy12044        341 NQAGSTSSNYTIRIVL  356 (767)
Q Consensus       341 N~~G~s~~s~sL~V~~  356 (767)
                         |.....+.+.|..
T Consensus        90 ---g~~~~~~~L~V~~  102 (115)
T 2cr6_A           90 ---GDQRASAALRVTE  102 (115)
T ss_dssp             ---TTEECCEEEEEEC
T ss_pred             ---CCeeEEEEEEEEC
Confidence               5555566666654

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=97.60  E-value=6.2e-05  Score=67.28  Aligned_cols=103  Identities=20%  Similarity=0.316  Sum_probs=63.4

Q ss_pred             CCCCCCCCccceeecccccccccccccccCC----CcEEEeecC-------eeccC--CC-c----ccccccceeecccC
Q psy12044        253 CEPQITPSTFYLEIQEGKNVSLLCKVSAIPE----AKITWLFDG-------VPIQN--ES-M----SASESHAVYSTEEG  314 (767)
Q Consensus       253 C~P~i~~~~~~~~v~~G~~vsL~C~a~g~P~----p~itW~~~g-------~~l~~--~s-~----~~~~~~~~~~~~~g  314 (767)
                      |...+...+..+.+..|+.++|.|.+.+.+.    +.+.|.+.+       ..+..  .. .    ......+..+....
T Consensus         4 ~~~~v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~   83 (126)
T 1eaj_A            4 RSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSND   83 (126)
T ss_dssp             SSCEESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSC
T ss_pred             ccEEEECCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEccc
Confidence            4444444555678899999999999887654    359998843       11110  00 0    00001112222221


Q ss_pred             cceeeeEEEEeeeccCCCCceeEeeccCCCCcccceEEEEE
Q psy12044        315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       315 ~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V~  355 (767)
                      .......|.|.++..+|.|.|.|.+.+..|.....+.|.|.
T Consensus        84 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  124 (126)
T 1eaj_A           84 LKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  124 (126)
T ss_dssp             GGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccCCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEE
Confidence            23334679999999999999999999987765555555543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=97.59  E-value=4.8e-05  Score=74.61  Aligned_cols=85  Identities=25%  Similarity=0.443  Sum_probs=64.9

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.|.+.|.+++..+......       .....  ......|.|.++...|.|.|.|.|.|.
T Consensus       126 ~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~-------~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~  196 (212)
T 2r15_A          126 VVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHC-------NLKFE--AGRTAYFTINGVSTADSGKYGLVVKNK  196 (212)
T ss_dssp             EEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSE-------EEEEE--TTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCE-------EEEEc--CCCEEEEEEcCcchHHCeEEEEEEEcC
Confidence            456788999999999999999999999998776543211       11111  012368999999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus       197 ~g~~~~~~~l~V~~  210 (212)
T 2r15_A          197 YGSETSDFTVSVFI  210 (212)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEc
Confidence            99887777666543

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=97.55  E-value=0.00012  Score=63.46  Aligned_cols=77  Identities=17%  Similarity=0.391  Sum_probs=54.5

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|+.+.|.|.+. .|.+.+.|++++..+.....       +.....+   ....|.|.++..+|.|.|.|.+    
T Consensus        18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~-------~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a----   82 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTK-------YIFEHKG---CQRILFINNCQMTDDSEYYVTA----   82 (100)
T ss_dssp             EEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTT-------EEEEEET---TEEEEEEEEECTTTCCEEEEEE----
T ss_pred             cEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCC-------EEEEecC---CEEEEEEcCCCcCcCEEEEEEE----
Confidence            4677899999999998 79999999998876643221       1111111   2347999999999999999999    


Q ss_pred             CCcccceEEEEE
Q psy12044        344 GSTSSNYTIRIV  355 (767)
Q Consensus       344 G~s~~s~sL~V~  355 (767)
                      |.....+.+.|.
T Consensus        83 g~~~~~~~l~V~   94 (100)
T 2yuv_A           83 GDEKCSTELFVR   94 (100)
T ss_dssp             TTEEEEEEEEEC
T ss_pred             CCceEEEEEEEe
Confidence            444444444443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=97.55  E-value=9.5e-05  Score=71.66  Aligned_cols=90  Identities=23%  Similarity=0.360  Sum_probs=66.4

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+.....     + +....  .......|.|.++...|.|.|.|.+
T Consensus        10 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-----~-~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (197)
T 2j8h_A           10 ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL-----K-YRIQE--FKGGYHQLIIASVTDDDATVYQVRA   81 (197)
T ss_dssp             CCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSS-----S-EEEEE--ETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCC-----c-EEEEE--cCCCEEEEEECcCCHHhCEEEEEEE
Confidence            34456788999999999999999999999998877653211     0 11110  0112348999999999999999999


Q ss_pred             ccCCCCcccceEEEEEee
Q psy12044        340 ENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~~~  357 (767)
                      .|..|.....+.+.|...
T Consensus        82 ~n~~g~~~~~~~l~V~~~   99 (197)
T 2j8h_A           82 TNQGGSVSGTASLEVEVP   99 (197)
T ss_dssp             EETTEEEEEEEEEEEEEE
T ss_pred             EECCCceeEEEEEEEcCC
Confidence            999888777777766543

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=97.55  E-value=5.3e-05  Score=72.73  Aligned_cols=82  Identities=24%  Similarity=0.475  Sum_probs=63.6

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.+.+.|.+++..+......       ...     ...+.|.|.++...|.|.|.|.|.|.
T Consensus       107 ~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~-------~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~  174 (189)
T 2v5t_A          107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-------ILK-----GSNTELTVRNIINSDGGPYVCRATNK  174 (189)
T ss_dssp             EEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSE-------EEE-----TTTTEEEECSCCGGGCEEEEEEEEET
T ss_pred             cccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcE-------EEe-----cCCCEEEEcCCChhhCeeEEEEEEeC
Confidence            345678999999999999999999999988776543211       111     11357999999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|.+
T Consensus       175 ~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          175 AGEDEKQAFLQVFV  188 (189)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCceeEEEEEEEEe
Confidence            99888777766643

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=97.54  E-value=3.5e-05  Score=83.91  Aligned_cols=80  Identities=26%  Similarity=0.476  Sum_probs=64.1

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|..+.|.|.+.+.|.|.+.|.+++..+.....       +.       ...+.|.|.++..+|.|.|.|.|.|
T Consensus       303 ~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~-------~~-------~~~~~L~i~~v~~~D~G~Y~C~A~N  368 (384)
T 3kld_A          303 NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDR-------IQ-------IEQGTLNITIVNLSDAGMYQCVAEN  368 (384)
T ss_dssp             CCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTT-------EE-------EETTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCcc-------EE-------EeCCEEEEeecChhhCEEEEEEEEe
Confidence            345677899999999999999999999999887643221       11       1124799999999999999999999


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      ..|...+++.|.|.
T Consensus       369 ~~G~~~~~a~L~V~  382 (384)
T 3kld_A          369 KHGVIFSSAELSVI  382 (384)
T ss_dssp             TTEEEEEEEEEEEC
T ss_pred             CCceEEeceEEEEe
Confidence            99998887777664

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=97.52  E-value=0.00013  Score=68.12  Aligned_cols=94  Identities=14%  Similarity=0.180  Sum_probs=61.9

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCc-ccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESM-SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .+....+..|+.+.|.|.+.+.+.+.+.|...+........ .......+.....  ......|.|.++...|.|.|.|.
T Consensus        44 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~  121 (145)
T 1z9m_A           44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS--TPHELSISISNVALADEGEYTCS  121 (145)
T ss_dssp             BCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEE--CSSEEEEEECSCCGGGCEEEEEE
T ss_pred             CCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecC--CCCeEEEEECCCChhhCEEEEEE
Confidence            44567889999999999999999999999853321110000 0000011111110  11246899999999999999999


Q ss_pred             eccCCCCcccceEEEEEe
Q psy12044        339 AENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~  356 (767)
                      +.|. |.....+.+.|..
T Consensus       122 ~~n~-~~~~~~~~L~V~~  138 (145)
T 1z9m_A          122 IFTM-PVRTAKSLVTVLG  138 (145)
T ss_dssp             ECSS-SCEEEEEEEEEEC
T ss_pred             EEcC-CCceEEEEEEEEe
Confidence            9999 7766666666654

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=97.52  E-value=8.6e-05  Score=73.55  Aligned_cols=88  Identities=25%  Similarity=0.385  Sum_probs=67.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +....+..|+.+.|.|.+.+.|.+.+.|.+++..+......     .+....   ....+.|.|.++...|.|.|.|.+.
T Consensus        25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~-----~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYS-----NIKIYN---TPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             CSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSC-----SEEEEE---ETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             CceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCc-----cEEEec---CCCeeEEEEecCChhhCeEEEEEEE
Confidence            33467889999999999999999999999998876543211     111111   1125789999999999999999999


Q ss_pred             cCCCCcccceEEEEEe
Q psy12044        341 NQAGSTSSNYTIRIVL  356 (767)
Q Consensus       341 N~~G~s~~s~sL~V~~  356 (767)
                      |..|.....+.+.+..
T Consensus        97 n~~g~~~~~~~l~v~~  112 (215)
T 3mtr_A           97 NRIGQESLEFILVQAD  112 (215)
T ss_dssp             CSSCEEEEEEEEEECC
T ss_pred             ECCCceEEEEEEEECC
Confidence            9999887777666654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=97.52  E-value=3.4e-05  Score=74.77  Aligned_cols=78  Identities=26%  Similarity=0.394  Sum_probs=61.5

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.+.+.|.+++..+......         .     .....|.|.++...|.|.|+|.+.|.
T Consensus       122 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~---------~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~  187 (201)
T 3s97_C          122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI---------S-----TSGAVLKIFNIQLEDEGIYECEAENI  187 (201)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEE---------E-----TTTTEEEECSCCGGGCEEEEEEEEET
T ss_pred             ceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceee---------c-----CCCCEEEEccCChhhCEEEEEEEEec
Confidence            456778999999999999999999999988755432111         0     11347999999999999999999999


Q ss_pred             CCCcccceEEEE
Q psy12044        343 AGSTSSNYTIRI  354 (767)
Q Consensus       343 ~G~s~~s~sL~V  354 (767)
                      .|.....+.+.|
T Consensus       188 ~g~~~~~~~l~V  199 (201)
T 3s97_C          188 RGKDKHQARIYV  199 (201)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCceeeeEEEEE
Confidence            998877666655

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=97.51  E-value=7.3e-05  Score=73.82  Aligned_cols=82  Identities=27%  Similarity=0.417  Sum_probs=63.6

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|..+.|.|.+.+.|.+.+.|.+++..+......      +.       ...+.|.|.++...|.|.|+|.|.|
T Consensus       118 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~------~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N  184 (212)
T 2yd1_A          118 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR------YS-------LKDGFLQIENSREEDQGKYECVAEN  184 (212)
T ss_dssp             CCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTT------EE-------EETTEEEECSCCGGGCEEEEEEEEE
T ss_pred             CceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCe------EE-------ccCCeEEEccCChhhCEEEEEEeec
Confidence            3456778999999999999999999999988776432111      11       1124799999999999999999999


Q ss_pred             CCCCcccc-eEEEEEe
Q psy12044        342 QAGSTSSN-YTIRIVL  356 (767)
Q Consensus       342 ~~G~s~~s-~sL~V~~  356 (767)
                      ..|...+. +.+.|..
T Consensus       185 ~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          185 SMGTEHSKATNLYVKV  200 (212)
T ss_dssp             TTEEEECCCEEEEEEC
T ss_pred             CCCceeEEEEEEEEEe
Confidence            99988764 6666654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=97.51  E-value=7.9e-05  Score=76.78  Aligned_cols=90  Identities=22%  Similarity=0.362  Sum_probs=67.0

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+...+....+..|..+.|.|.+.+.|.+.+.|.+++..+......       ....   ......|.|.++...|.|.
T Consensus       193 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~-------~~~~---~~~~~~L~i~~v~~~d~G~  262 (284)
T 2rik_A          193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY-------KIMS---ENFLTSIHILNVDSADIGE  262 (284)
T ss_dssp             CBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTE-------EEEE---ETTEEEEEECSCCGGGCEE
T ss_pred             CcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCE-------EEEE---cCCEEEEEEcCCCcccCEE
Confidence            33444444567788999999999999999999999998776543211       1111   1123579999999999999


Q ss_pred             eeEeeccCCCCcccceEEEE
Q psy12044        335 FVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V  354 (767)
                      |.|.|.|..|.....+.+.|
T Consensus       263 Y~C~a~N~~G~~~~~~~l~V  282 (284)
T 2rik_A          263 YQCKASNDVGSYTCVGSITL  282 (284)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEeCCCceeEEEEEEE
Confidence            99999999998877666654

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=97.50  E-value=6e-05  Score=79.28  Aligned_cols=76  Identities=20%  Similarity=0.321  Sum_probs=60.7

Q ss_pred             eecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      .+..|..+.|.|.+.+.|.| .+.|.+++..+.....                .....|.|.++...|.|.|.|.|.|..
T Consensus       228 ~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~----------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~  291 (313)
T 4fqp_A          228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAV----------------AQGAQLLIRPVDKPINTTLICNVTNAL  291 (313)
T ss_dssp             EETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEE----------------EETTEEEECCCSSCCEEEEEEEEECSS
T ss_pred             eecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceE----------------EeCCEEEECcCChhhCEEEEEEEEeCC
Confidence            34567889999999999999 6999998876533211                123479999999999999999999999


Q ss_pred             CCcccceEEEEEe
Q psy12044        344 GSTSSNYTIRIVL  356 (767)
Q Consensus       344 G~s~~s~sL~V~~  356 (767)
                      |.....+.+.|..
T Consensus       292 G~~~~~~~l~V~~  304 (313)
T 4fqp_A          292 GARQAELTVQVKE  304 (313)
T ss_dssp             CEEEEEEEEEEEC
T ss_pred             CcEEEEEEEEEEe
Confidence            9888777776654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=97.49  E-value=7.4e-05  Score=72.43  Aligned_cols=83  Identities=22%  Similarity=0.240  Sum_probs=62.7

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEee-eccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN-SNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~n-vs~sD~GtY~CvA~  340 (767)
                      ....+..|..+.|.|.+.+.|.+.+.|.+++..+......       ....   ......|.|.+ +...|.|.|.|.+.
T Consensus       112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~---~~~~~~L~i~~~~~~~d~G~Y~C~a~  181 (197)
T 2j8h_A          112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHY-------QVIV---TRSFTSLVFPNGVERKDAGFYVVCAK  181 (197)
T ss_dssp             EEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSC-------EEEE---CSSEEEEECTTCCCGGGCEEEEEEEE
T ss_pred             CeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCE-------EEEE---cCCceEEEEeCCCCcccCEeEEEEEE
Confidence            3456778999999999999999999999988766532211       1111   11246799999 99999999999999


Q ss_pred             cCCCCcccceEEEE
Q psy12044        341 NQAGSTSSNYTIRI  354 (767)
Q Consensus       341 N~~G~s~~s~sL~V  354 (767)
                      |..|.....+.+.|
T Consensus       182 N~~g~~~~~~~l~V  195 (197)
T 2j8h_A          182 NRFGIDQKTVELDV  195 (197)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             eCCCcEeEEEEEEE
Confidence            99998766665554

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=97.48  E-value=0.0001  Score=71.26  Aligned_cols=88  Identities=25%  Similarity=0.383  Sum_probs=63.3

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCeeccCCCcccccccceeecccCcceeeeEEEEeeec-cCCCCceeE
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN-IDDNGTFVC  337 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs-~sD~GtY~C  337 (767)
                      .....+..|..+.|.|.+.+.|.+.+.|.+  ++..+.....    ...+.....   ...+.|.|.++. .+|.|.|.|
T Consensus        99 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~----~~~~~~~~~---~~~~~L~i~~~~~~~d~G~Y~C  171 (190)
T 2wv3_A           99 KRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNS----SGRFFIINK---ENYTELNIVNLQITEDPGEYEC  171 (190)
T ss_dssp             CSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCT----TSCEEEEEC---SSEEEEEECSCCTTTSCEEEEE
T ss_pred             CCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecC----CCeEEEecC---CCeeEEEEEeccccCCCEEEEE
Confidence            334567889999999999999999999999  6655431111    011111111   123579999999 799999999


Q ss_pred             eeccCCCCcccceEEEEE
Q psy12044        338 VAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       338 vA~N~~G~s~~s~sL~V~  355 (767)
                      .|.|..|.....+.+.|.
T Consensus       172 ~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          172 NATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEECSSCEEEEEEEEEEE
T ss_pred             EEEecCCcceeEEEEEEE
Confidence            999999988777766654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=97.47  E-value=0.00012  Score=76.52  Aligned_cols=85  Identities=25%  Similarity=0.455  Sum_probs=65.7

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|+.+.|.|.+.+.|.+.+.|.+++..+......       .....  ......|.|.++...|.|.|.|.|.|.
T Consensus       231 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~-------~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~  301 (317)
T 2y25_A          231 VVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHC-------NLKFE--AGRTAYFTINGVSTADSGKYGLVVKNK  301 (317)
T ss_dssp             EEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSE-------EECCB--TTTEEEEEEBSCCSTTCEEEEEEEEET
T ss_pred             cEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcE-------EEEEc--CCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            457789999999999999999999999988776433211       11111  012368999999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus       302 ~g~~~~~~~l~V~~  315 (317)
T 2y25_A          302 YGSETSDFTVSVFI  315 (317)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCeEEEEEEEEEEc
Confidence            99988777776654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=97.47  E-value=0.00011  Score=71.60  Aligned_cols=84  Identities=15%  Similarity=0.210  Sum_probs=63.8

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..+..+.+.|.+.+.|.|.++|.+++..+.....         ....+.....+.|.|..+...|.|.|+|.|.|.+
T Consensus       128 ~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~---------~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~  198 (218)
T 4frw_A          128 LEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRS---------FKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPG  198 (218)
T ss_dssp             EETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEE---------EECSSSEEEEEEEEECCCGGGTTCEEEEEEECTT
T ss_pred             eeeeeccccceeeeccCCcCceEEEEECCcccccCce---------EecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCC
Confidence            3455678899999999999999999998765432211         1122333456789999999999999999999999


Q ss_pred             CCcccceEEEEEe
Q psy12044        344 GSTSSNYTIRIVL  356 (767)
Q Consensus       344 G~s~~s~sL~V~~  356 (767)
                      |.....+++.+.+
T Consensus       199 g~~~~~~t~~v~V  211 (218)
T 4frw_A          199 LLQDQRITHILHV  211 (218)
T ss_dssp             CSSCEEEEEECCE
T ss_pred             CCeEEEEEEEEEE
Confidence            9887777666554

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=97.47  E-value=6.2e-05  Score=72.68  Aligned_cols=82  Identities=27%  Similarity=0.430  Sum_probs=62.1

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.+.+.|.+++..+......       .....+   ....|.|.++...|.|.|.|.|.|.
T Consensus       112 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~-------~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~  181 (194)
T 2a38_A          112 SMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDF-------QISQEG---DLYSLLIAEAYPEDSGTYSVNATNS  181 (194)
T ss_dssp             CEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSE-------EEEEET---TEEEEEEEEECGGGCEEEEEEEEET
T ss_pred             cEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcE-------EEEEcC---CEEEEEECCCChhcCeEEEEEEEeC
Confidence            456788999999999999999999999988776532211       111111   1347999999999999999999999


Q ss_pred             CCCcccceEEEE
Q psy12044        343 AGSTSSNYTIRI  354 (767)
Q Consensus       343 ~G~s~~s~sL~V  354 (767)
                      .|.....+.+.|
T Consensus       182 ~g~~~~~~~l~V  193 (194)
T 2a38_A          182 VGRATSTAELLV  193 (194)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCceEEEEEEEE
Confidence            998776665544

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=97.47  E-value=5.4e-05  Score=75.35  Aligned_cols=82  Identities=15%  Similarity=0.231  Sum_probs=53.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +....+.+|..+.|.|.+.|.|.|.++|.+++..+......   ...+....++.   -..+.+.++..+|.|.|+|+|.
T Consensus       113 ~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~---~~r~~~~~~g~---l~il~i~~v~~~D~G~YtC~A~  186 (203)
T 4fa8_A          113 SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAA---NGGVMKEKDGS---LSVAVDLSLPKPWHLPVTCVGK  186 (203)
T ss_dssp             EEECCSSCSCCEEEEEEEEEESCCEEEECCC---------------CCEECTTSC---EEEEEEEEECSSCCCCEEEEEE
T ss_pred             ceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccc---cceEEEeCCCC---EEEEEECCCCHHHCEEEEEEEE
Confidence            33456778999999999999999999999865433211110   01111222221   1245567899999999999999


Q ss_pred             cCCCCccc
Q psy12044        341 NQAGSTSS  348 (767)
Q Consensus       341 N~~G~s~~  348 (767)
                      |..|.+..
T Consensus       187 N~~G~a~~  194 (203)
T 4fa8_A          187 NDKEEAHG  194 (203)
T ss_dssp             SSSCEEEE
T ss_pred             cCCCEEEE
Confidence            99998764

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=97.46  E-value=0.00015  Score=70.56  Aligned_cols=84  Identities=20%  Similarity=0.324  Sum_probs=59.4

Q ss_pred             ceeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...+..|..+.|.|.+ .+.|.+.+.|.+++..+..............+   ......+.|.|.++..+|.|.|+|.|.|
T Consensus       116 ~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  192 (209)
T 1nbq_A          116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY---VLNPTTGELVFDPLSASDTGEYSCEARN  192 (209)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCC---CCCTTTCCEEESSCCGGGCCCEEEEEEC
T ss_pred             ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccce---EEcCCcceEEEEeccccCCeEEEEEEeC
Confidence            3457789999999996 89999999999988766543321111000000   0111346799999999999999999999


Q ss_pred             CCCCcccc
Q psy12044        342 QAGSTSSN  349 (767)
Q Consensus       342 ~~G~s~~s  349 (767)
                      ..|....+
T Consensus       193 ~~g~~~~s  200 (209)
T 1nbq_A          193 GYGTPMTS  200 (209)
T ss_dssp             SSSCCEEC
T ss_pred             CcCccccc
Confidence            99988433

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.46  E-value=0.00012  Score=64.45  Aligned_cols=73  Identities=22%  Similarity=0.352  Sum_probs=53.6

Q ss_pred             CCccceeecccccccccccccccCC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      .......+.+|+.+.|.|.+.+.+. +.+.|++++..+.....       +.....+   ....|.|.++..+|.|.|+|
T Consensus        13 ~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r-------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C   82 (104)
T 2eny_A           13 KRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSR-------FQATRQG---RKYILVVREAAPSDAGEVVF   82 (104)
T ss_dssp             BCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSS-------CEEEEET---TEEEEEECSCCTTTCSCEEE
T ss_pred             ecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCC-------EEEEEcC---CEEEEEECCCCHHHCEEEEE
Confidence            3345678889999999999998875 48999999877653321       1111111   23579999999999999999


Q ss_pred             eecc
Q psy12044        338 VAEN  341 (767)
Q Consensus       338 vA~N  341 (767)
                      .+.|
T Consensus        83 ~a~~   86 (104)
T 2eny_A           83 SVRG   86 (104)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9865

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=97.45  E-value=0.00016  Score=75.68  Aligned_cols=89  Identities=21%  Similarity=0.360  Sum_probs=66.1

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccC----cceeeeEEEEeeeccCC-CCceeEe
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG----TEIKKSELLIYNSNIDD-NGTFVCV  338 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g----~~~~~s~L~I~nvs~sD-~GtY~Cv  338 (767)
                      ..+..|..+.|.|.+.+.|.|.+.|.+++..+.........  .......+    .....+.|.|.++..+| .|.|.|.
T Consensus       219 ~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~  296 (315)
T 1itb_B          219 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE--DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF  296 (315)
T ss_dssp             EECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEE--EEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEE
T ss_pred             EEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccc--cceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEE
Confidence            46789999999999999999999999998877654321111  01111111    12345689999999999 9999999


Q ss_pred             eccCCCCcccceEEEE
Q psy12044        339 AENQAGSTSSNYTIRI  354 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V  354 (767)
                      |.|..|.....+.+.+
T Consensus       297 a~N~~G~~~~~~~l~v  312 (315)
T 1itb_B          297 AKNTHGIDAAYIQLIY  312 (315)
T ss_dssp             EECTTCCEEEEEEEEC
T ss_pred             EecCCCceeEEEEEEe
Confidence            9999999887776654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=97.45  E-value=7.1e-05  Score=72.14  Aligned_cols=83  Identities=23%  Similarity=0.447  Sum_probs=62.5

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      .....+..|..+.|.|.+.+.|.+.+.|.+++..+.....       +....      .+.|.|.++...|.|.|.|.+.
T Consensus       107 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~-------~~~~~------~~~L~i~~~~~~d~G~Y~C~a~  173 (192)
T 2iep_A          107 PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR-------IAVLE------SGSLRIHNVQKEDAGQYRCVAK  173 (192)
T ss_dssp             CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSS-------EEECT------TSCEEESSCCGGGCEEEEEEEE
T ss_pred             CcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCc-------EEEec------CCcEEEecCChhhCEEEEEEEE
Confidence            3345677899999999999999999999998877654321       11111      2369999999999999999999


Q ss_pred             cCCCCcc-cceEEEEEe
Q psy12044        341 NQAGSTS-SNYTIRIVL  356 (767)
Q Consensus       341 N~~G~s~-~s~sL~V~~  356 (767)
                      |..|... ..+.+.|..
T Consensus       174 n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          174 NSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             ETTEEEECCCEEEEEEC
T ss_pred             cCCCcEEEEEEEEEEEe
Confidence            9998774 346555543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=97.43  E-value=0.00017  Score=71.07  Aligned_cols=92  Identities=24%  Similarity=0.312  Sum_probs=66.5

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeecc-CCCCce
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI-DDNGTF  335 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~-sD~GtY  335 (767)
                      +...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+.....     + +.....  ......|.|.++.. .|.|.|
T Consensus         9 ~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-----~-~~~~~~--~~~~~~L~i~~v~~~~d~G~Y   80 (212)
T 2yd1_A            9 IIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS-----R-YTVLEQ--PGGISILRIEPVRAGRDDAPY   80 (212)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTST-----T-EEEEEE--TTTEEEEEESSCCTTTTCSEE
T ss_pred             EEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcc-----e-eEEEEc--CCCeEEEEEEecCCCCcCceE
Confidence            33344556788999999999999999999999998877642110     0 111110  11236899999999 999999


Q ss_pred             eEeeccCCCC-cccceEEEEEe
Q psy12044        336 VCVAENQAGS-TSSNYTIRIVL  356 (767)
Q Consensus       336 ~CvA~N~~G~-s~~s~sL~V~~  356 (767)
                      .|.+.|..|. ....+.+.|..
T Consensus        81 ~C~~~n~~g~~~~~~~~l~V~~  102 (212)
T 2yd1_A           81 ECVAENGVGDAVSADATLTIYE  102 (212)
T ss_dssp             EEEEECSSSCEEEEEEEEEEEC
T ss_pred             EEEEEeCCCCeEEeeEEEEEec
Confidence            9999999887 55666666654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=97.43  E-value=8.3e-05  Score=73.48  Aligned_cols=91  Identities=23%  Similarity=0.354  Sum_probs=66.6

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeee-ccCCCCce
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS-NIDDNGTF  335 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nv-s~sD~GtY  335 (767)
                      +...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+......      .....   ......|.|.++ ...|.|.|
T Consensus         9 ~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~------~~~~~---~~~~~~L~i~~v~~~~d~G~Y   79 (212)
T 2yd6_A            9 FTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFE------VIEFD---DGSGSVLRIQPLRTPRDEAIY   79 (212)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEE------EEEEG---GGTEEEEEECSCCTTTTCEEE
T ss_pred             EEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCcee------EEEEc---CCCceEEEEeccCCCCCCeEE
Confidence            333344567889999999999999999999999988776543211      00000   112467999999 59999999


Q ss_pred             eEeeccCCCCcccceEEEEEe
Q psy12044        336 VCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       336 ~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      .|.+.|..|.....+.+.|..
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~  100 (212)
T 2yd6_A           80 ECVASNNVGEISVSTRLTVLR  100 (212)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEEEEec
Confidence            999999988876666666654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=97.42  E-value=0.00012  Score=70.67  Aligned_cols=90  Identities=18%  Similarity=0.309  Sum_probs=66.6

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      ..+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+......     .+....   ......|.|.++...|.|.|.|.
T Consensus        10 ~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-----~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~   81 (194)
T 2a38_A           10 QPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLP-----GVQISF---SDGRAKLTIPAVTKANSGRYSLK   81 (194)
T ss_dssp             ECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTST-----TCEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             ccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCC-----ceEEEe---CCCEEEEEECCCCcccCEEEEEE
Confidence            3344567889999999999999999999999988766443211     011110   12246899999999999999999


Q ss_pred             eccCCCCcccceEEEEEe
Q psy12044        339 AENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~  356 (767)
                      +.|..|.....+.+.|..
T Consensus        82 ~~n~~~~~~~~~~l~v~~   99 (194)
T 2a38_A           82 ATNGSGQATSTAELLVKA   99 (194)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEcCCceEeEEEEEEEcc
Confidence            999988877766666653

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=97.42  E-value=0.00012  Score=70.61  Aligned_cols=91  Identities=16%  Similarity=0.344  Sum_probs=67.6

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +........+..|+.+.|.|.+.+.|.+.+.|.+++..+......       .....   .....|.|.++...|.|.|.
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-------~~~~~---~~~~~L~i~~~~~~d~G~Y~   79 (197)
T 3lcy_A           10 IRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKY-------KMSSD---GRTHTLTVMTEEQEDEGVYT   79 (197)
T ss_dssp             EEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSE-------EEEES---SSEEEEEEECCSGGGCEEEE
T ss_pred             ccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccE-------EEEeC---CCEEEEEEecCCccCCEEEE
Confidence            333444667889999999999999999999999988776432211       11111   12357999999999999999


Q ss_pred             EeeccCCCCcccceEEEEEee
Q psy12044        337 CVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      |.+.|..|.....+.+.+...
T Consensus        80 C~~~n~~~~~~~~~~l~v~~~  100 (197)
T 3lcy_A           80 CIATNEVGEVETSSKLLLQAT  100 (197)
T ss_dssp             EEEECSSCEEEEEEEEEEEEE
T ss_pred             EEEECCCCceeEEEEEEEEcC
Confidence            999999888777777666543

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=97.42  E-value=0.00017  Score=65.88  Aligned_cols=95  Identities=18%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             CccceeecccccccccccccccCC---CcEEEeecCee--cc---CC-----CcccccccceeecccCcceeeeEEEEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPE---AKITWLFDGVP--IQ---NE-----SMSASESHAVYSTEEGTEIKKSELLIYN  326 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~---p~itW~~~g~~--l~---~~-----s~~~~~~~~~~~~~~g~~~~~s~L~I~n  326 (767)
                      .........|+.++|.|.......   ..+.|.+.+..  +.   ..     ........+..+..........+|.|.+
T Consensus        11 ~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~   90 (125)
T 4gos_A           11 TTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKN   90 (125)
T ss_dssp             EEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESS
T ss_pred             cCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECC
Confidence            344556778999999998764433   36899884321  10   00     0001111123333333344467899999


Q ss_pred             eccCCCCceeEeeccCCCCcccceEEEE
Q psy12044        327 SNIDDNGTFVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       327 vs~sD~GtY~CvA~N~~G~s~~s~sL~V  354 (767)
                      ++.+|.|.|.|.+.+..|...+.+.|.|
T Consensus        91 v~~~D~G~Y~C~v~~~~g~~~~~v~LkV  118 (125)
T 4gos_A           91 VQLTDAGTYKCYIITSKGKGNANLEYKT  118 (125)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CChHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            9999999999999998887766665554

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=97.42  E-value=0.0001  Score=76.41  Aligned_cols=96  Identities=19%  Similarity=0.378  Sum_probs=65.0

Q ss_pred             CCCCCccceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       256 ~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      .+........+..|+.+.|.|.+.+.|.|. +.|.+++..+......   ...............+.|.|.++...|.|.
T Consensus       190 ~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~  266 (290)
T 2o26_X          190 VVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQV---KHNSWHRGDFNYERQETLTISSARVDDSGV  266 (290)
T ss_dssp             EEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCE---ECCEEEEETTEEEEEEEEEESSCCSSSCEE
T ss_pred             ccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceee---cccccccCceeeEEEEEEEEcCCCcccCeE
Confidence            333333445778999999999999999996 9999987653200000   000011111123445789999999999999


Q ss_pred             eeEeeccCCCCcccceEEEE
Q psy12044        335 FVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V  354 (767)
                      |.|.|.|..|.....+.+.|
T Consensus       267 Y~C~a~N~~g~~~~~~~l~V  286 (290)
T 2o26_X          267 FMCYANNTFGSANVTTTLKV  286 (290)
T ss_dssp             EEEEEECSSCEEEEEEEECC
T ss_pred             EEEEEeCCCCcEEEEEEEEE
Confidence            99999999998866655544

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.40  E-value=0.00025  Score=62.48  Aligned_cols=68  Identities=24%  Similarity=0.457  Sum_probs=50.9

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ..+..|+.+.|.|.+ +.|.+.+.|++++..+....      ..+.....+   ....|.|.++..+|.|.|.|.+.+
T Consensus        26 ~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~------~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~~   93 (104)
T 1pd6_A           26 YQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSG------SKYIFESIG---AKRTLTISQCSLADDAAYQCVVGG   93 (104)
T ss_dssp             EEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCS------SSSEEEEET---TEEEEEECSCSSSSCEEEEEEETT
T ss_pred             EEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCC------CeEEEEecC---CEEEEEECCCCcccCEEEEEEECC
Confidence            578899999999999 78899999999987765430      011111111   134799999999999999999954

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=97.39  E-value=9.5e-05  Score=76.34  Aligned_cols=85  Identities=31%  Similarity=0.590  Sum_probs=64.1

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.|.+.|.+++..+.......   ..+...     ...+.|.|.++..+|.|.|.|.|.|.
T Consensus       205 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~---~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~  276 (291)
T 1qz1_A          205 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD---EKHIFS-----DDSSELTIRNVDKNDEAEYVCIAENK  276 (291)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CC---SSEEEC-----TTSCEEEECSCCGGGCEEEEEEEEET
T ss_pred             ccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCC---cceEEc-----CCCcEEEEEecChhcCEEEEEEEEeC
Confidence            3467789999999999999999999999988765432110   011111     12357999999999999999999999


Q ss_pred             CCCcccceEEEEE
Q psy12044        343 AGSTSSNYTIRIV  355 (767)
Q Consensus       343 ~G~s~~s~sL~V~  355 (767)
                      .|.....+.+.|.
T Consensus       277 ~G~~~~~~~l~V~  289 (291)
T 1qz1_A          277 AGEQDASIHLKVF  289 (291)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCceEEEEEEEEE
Confidence            9988777776664

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=97.39  E-value=0.00015  Score=74.74  Aligned_cols=82  Identities=24%  Similarity=0.475  Sum_probs=63.8

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.+.+.|.+++..+......       ...     .....|.|.++...|.|.|.|.|.|.
T Consensus       203 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-------~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~N~  270 (291)
T 2wim_A          203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-------ILK-----GSNTELTVRNIINSDGGPYVCRATNK  270 (291)
T ss_dssp             ECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTE-------EEC-----STTCEEEEESCCSTTCEEEEEEEEET
T ss_pred             cceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccE-------EEc-----CCccEEEEeeCCcccCEEEEEEEEEC
Confidence            345678999999999999999999999998776543211       111     11357999999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|...+.+.+.+..
T Consensus       271 ~G~~~~~~~l~v~~  284 (291)
T 2wim_A          271 AGEDEKQAFLQVFV  284 (291)
T ss_dssp             TEEEEEEEEEEC--
T ss_pred             CCceeeeEEEEEEE
Confidence            99988877776654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=97.38  E-value=0.00019  Score=70.10  Aligned_cols=82  Identities=24%  Similarity=0.513  Sum_probs=62.5

Q ss_pred             cceeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ....+..|..+.|.|.+ .+.|.+.+.|.+++..+......      ..       ...+.|.|.++..+|.|.|.|.+.
T Consensus       119 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~------~~-------~~~~~L~i~~~~~~d~G~Y~C~a~  185 (212)
T 2v9r_A          119 SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER------IT-------IRGGKLMITYTRKSDAGKYVCVGT  185 (212)
T ss_dssp             CCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTT------EE-------EETTEEEESSCCGGGCEEEEEEEE
T ss_pred             CceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcce------EE-------ccCCeEEEeeCCHhhCeeEEEEEe
Confidence            34567889999999998 89999999999988776532211      11       123479999999999999999999


Q ss_pred             cCCCCcccc-eEEEEEe
Q psy12044        341 NQAGSTSSN-YTIRIVL  356 (767)
Q Consensus       341 N~~G~s~~s-~sL~V~~  356 (767)
                      |..|...+. +.+.|..
T Consensus       186 N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          186 NMVGERESEVAELTVLE  202 (212)
T ss_dssp             ETTEEEECCCEEEEEEC
T ss_pred             cccCceecceEEEEEEe
Confidence            999876553 5666543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=97.37  E-value=8.8e-05  Score=80.08  Aligned_cols=79  Identities=25%  Similarity=0.481  Sum_probs=63.3

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.+.+.|.+++..+......       ..       ..+.|.|.++...|.|.|.|.|.|.
T Consensus       303 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-------~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~  368 (382)
T 1cs6_A          303 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI-------EV-------SGGELRFSKLVLEDSGMYQCVAENK  368 (382)
T ss_dssp             CEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSE-------EE-------ETTEEEESSCCGGGCEEEEEEEEET
T ss_pred             ccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceE-------EE-------ECCEEEECcCCcccCEEEEEEEEeC
Confidence            456778999999999999999999999998776543211       11       1347999999999999999999999


Q ss_pred             CCCcccceEEEEE
Q psy12044        343 AGSTSSNYTIRIV  355 (767)
Q Consensus       343 ~G~s~~s~sL~V~  355 (767)
                      .|.....+.+.|.
T Consensus       369 ~G~~~~~~~l~V~  381 (382)
T 1cs6_A          369 HGTVYASAELTVQ  381 (382)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCeEEEEEEEEEe
Confidence            9998877766653

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=97.37  E-value=0.00018  Score=70.22  Aligned_cols=90  Identities=18%  Similarity=0.330  Sum_probs=60.7

Q ss_pred             eeeccccccccccc-ccccCCCcEEEeecCe-eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        264 LEIQEGKNVSLLCK-VSAIPEAKITWLFDGV-PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       264 ~~v~~G~~vsL~C~-a~g~P~p~itW~~~g~-~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ..+..|..+.|.|. +.+.|.+.+.|.+++. .+..............+.   .....+.|.|.++..+|.|.|.|.|.|
T Consensus       114 ~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n  190 (212)
T 1f97_A          114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT---IDPKSGDLIFDPVTAFDSGEYYCQAQN  190 (212)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEE---ECTTTCCEEESSCCGGGCEEEEEEEEC
T ss_pred             cccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeE---ecCCCceEEEEecChhhCcEEEEEEcc
Confidence            45778999999999 7999999999999987 665433211110000000   011245799999999999999999999


Q ss_pred             CCCCcccceEEEEEe
Q psy12044        342 QAGSTSSNYTIRIVL  356 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~  356 (767)
                      ..|....+..+.+.+
T Consensus       191 ~~g~~~~s~~~~l~V  205 (212)
T 1f97_A          191 GYGTAMRSEAAHMDA  205 (212)
T ss_dssp             SSSCCEECCCEEEEE
T ss_pred             ccCCccccceEEEEE
Confidence            999884444444443

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=97.36  E-value=0.00014  Score=72.03  Aligned_cols=87  Identities=21%  Similarity=0.414  Sum_probs=65.3

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+.+|+.+.|.|.+.+.|.+.+.|.+++..+........    .     ........|.|.++...|.|.|.|.+.|
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----~-----~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   97 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG----Y-----KVRNQHWSLIMESVVPSDKGNYTCVVEN   97 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTC----C-----EEEGGGTEEEECSCCGGGCEEEEEEEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccc----e-----eeecCcceEEEecCCcccCEEEEEEEec
Confidence            345678999999999999999999999998877643221100    0     0111235799999999999999999999


Q ss_pred             CCCCcccceEEEEEee
Q psy12044        342 QAGSTSSNYTIRIVLK  357 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~~  357 (767)
                      ..|.....+.+.|...
T Consensus        98 ~~~~~~~~~~l~V~~~  113 (231)
T 3ojm_B           98 EYGSINHTYHLDVVER  113 (231)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             ccCcccccEEEEEEcC
Confidence            9888777777766643

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=97.36  E-value=0.00024  Score=70.37  Aligned_cols=94  Identities=18%  Similarity=0.348  Sum_probs=66.0

Q ss_pred             cceeecccccccccccccccCCCcEEEee----cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLF----DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~----~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      ....+..|..+.|.|.+.+.|.+.+.|.+    ++..+........   .............+.|.|.++...|.|.|+|
T Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  202 (231)
T 3ojm_B          126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYL---KVLKHSGINSSNAEVLALFNVTEADAGEYIC  202 (231)
T ss_dssp             CCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCE---EEEEECSTTCSCTTEEEECSCCGGGCEEEEE
T ss_pred             CceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceE---eEecccccccCCccEEEEecCCHHHCeEEEE
Confidence            34567789999999999999999999998    5554432221100   0000011112234579999999999999999


Q ss_pred             eeccCCCCcccceEEEEEeec
Q psy12044        338 VAENQAGSTSSNYTIRIVLKE  358 (767)
Q Consensus       338 vA~N~~G~s~~s~sL~V~~~~  358 (767)
                      .+.|..|.....+.+.|..++
T Consensus       203 ~a~n~~g~~~~~~~l~V~~~p  223 (231)
T 3ojm_B          203 KVSNYIGQANQSAWLTVLPKQ  223 (231)
T ss_dssp             EEEETTEEEEEEEEEEEECCC
T ss_pred             EEEeccceEeeEEEEEEecCC
Confidence            999999998777777776543

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=97.35  E-value=0.0003  Score=69.28  Aligned_cols=88  Identities=31%  Similarity=0.525  Sum_probs=63.4

Q ss_pred             cceeecccccccccccc-cccCCCcEEEeecCeeccCCCccccc-ccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        262 FYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ....+..|..+.|.|.+ .+.|.+.+.|.+++..+......... ......      ...+.|.|.++..+|.|.|+|.|
T Consensus       116 ~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a  189 (217)
T 2vr9_A          116 KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI------VDGGNLLISNVEPIDEGNYKCIA  189 (217)
T ss_dssp             CCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEE------ETTTEEEESSCCSTTCEEEEEEE
T ss_pred             CccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEe------cCCCcEEEeeCCHHHCeEEEEEE
Confidence            34567889999999999 89999999999998877643221100 011111      12347999999999999999999


Q ss_pred             ccCCCCcccceEEEEE
Q psy12044        340 ENQAGSTSSNYTIRIV  355 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~  355 (767)
                      .|..|.......+.+.
T Consensus       190 ~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          190 QNLVGTRESSYAKLIV  205 (217)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             EcccceeccccEEEEE
Confidence            9999988776544433

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=97.35  E-value=0.00024  Score=76.69  Aligned_cols=89  Identities=21%  Similarity=0.356  Sum_probs=65.5

Q ss_pred             ceeecccccccccccccccCCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ...+.+|+.+.|.|.+.+.|.+.+.|.++  +..+......... + +....   ....+.|.|.++..+|.|.|.|.|.
T Consensus         9 ~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~-~-~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~   83 (389)
T 2jll_A            9 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDG-R-IEVKG---QHGSSSLHIKDVKLSDSGRYDCEAA   83 (389)
T ss_dssp             CEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSS-S-EEEEE---CSSEEEEEEESCCGGGCEEEEEEEE
T ss_pred             ceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCC-e-EEEec---cCCcceEEEcccChhhCEEEEEEEE
Confidence            45677899999999999999999999998  7766542211111 1 11111   1235689999999999999999999


Q ss_pred             cCCCCcccceEEEEEe
Q psy12044        341 NQAGSTSSNYTIRIVL  356 (767)
Q Consensus       341 N~~G~s~~s~sL~V~~  356 (767)
                      |..|.....+.|.|..
T Consensus        84 n~~g~~~~~~~l~V~~   99 (389)
T 2jll_A           84 SRIGGHQKSMYLDIEY   99 (389)
T ss_dssp             CSSCEEEEEEEEEEEE
T ss_pred             eCCCCcceEEEEEEEe
Confidence            9999887777777664

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=97.34  E-value=0.0002  Score=71.22  Aligned_cols=76  Identities=21%  Similarity=0.405  Sum_probs=59.9

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +....+..|..+.|.|.+.+.|.+.+.|.+++..+....                   ...|.|.++...|.|.|+|.|.
T Consensus       125 ~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~-------------------~~~L~i~~v~~~d~G~Y~C~a~  185 (218)
T 3k0w_A          125 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------------KKLYMVPYVDLEHQGTYWCHVY  185 (218)
T ss_dssp             CCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC-------------------SSEEEESSCCGGGCEEEEEEEE
T ss_pred             CCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC-------------------CCEEEEeecChhcCEEEEEEEE
Confidence            334567889999999999999999999999887664321                   2468999999999999999999


Q ss_pred             cCCCC-cccceEEEEE
Q psy12044        341 NQAGS-TSSNYTIRIV  355 (767)
Q Consensus       341 N~~G~-s~~s~sL~V~  355 (767)
                      |..|. ....+.+.|.
T Consensus       186 n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          186 NDRDSQDSKKVEIIID  201 (218)
T ss_dssp             CSSCEEECCCEEEEEC
T ss_pred             cCCCCceeeeEEEEEe
Confidence            98887 3334555543

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=97.33  E-value=0.00036  Score=66.62  Aligned_cols=92  Identities=22%  Similarity=0.356  Sum_probs=65.2

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +...+....+..|+.+.|.|.+.+.|.+.+.|.+++..+.....       ......+ ....+.|.|.++...|.|.|.
T Consensus         5 ~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~-------~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~   76 (182)
T 1rhf_A            5 LMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQ-------LYIPVSE-QHWIGFLSLKSVERSDAGRYW   76 (182)
T ss_dssp             --CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEE-------EEEEEET-TEEEEEEEESSCCGGGCEEEE
T ss_pred             EEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCc-------eEEEecC-CCceEEEEEeecCcccCeEEE
Confidence            33445567788999999999999999999999998876644311       1111111 223578999999999999999


Q ss_pred             EeeccCCCCc-ccceEEEEEe
Q psy12044        337 CVAENQAGST-SSNYTIRIVL  356 (767)
Q Consensus       337 CvA~N~~G~s-~~s~sL~V~~  356 (767)
                      |.+.+..|.. ...+.+.|..
T Consensus        77 C~~~~~~~~~~~~~~~l~V~~   97 (182)
T 1rhf_A           77 CQVEDGGETEISQPVWLTVEG   97 (182)
T ss_dssp             EEESSCTTCEECCCEEEEEEC
T ss_pred             EEEEcCCCcEEEEEEEEEEec
Confidence            9999986653 3456666553

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=97.33  E-value=0.00012  Score=72.30  Aligned_cols=87  Identities=24%  Similarity=0.428  Sum_probs=61.0

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|..+.|.|.+.+.|.+.+.|.+++..+......    ..+....   ....+.|.|.++...|.|.|+|.|.|
T Consensus       116 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~----~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~N  188 (212)
T 2yd6_A          116 QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNN----GRIKQLR---SESIGALQIEQSEESDQGKYECVATN  188 (212)
T ss_dssp             CCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC----------CCEEEEE---ETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCC----ceEEEEe---cCCeEEEEEcCCCcccCEEEEEEEEC
Confidence            3456778999999999999999999999998776543111    0011110   11247899999999999999999999


Q ss_pred             CCCCcccc-eEEEEE
Q psy12044        342 QAGSTSSN-YTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s-~sL~V~  355 (767)
                      ..|...+. +.+.+.
T Consensus       189 ~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          189 SAGTRYSAPANLYVR  203 (212)
T ss_dssp             TTEEEECCCEEEEEE
T ss_pred             CCCccccccccEEEE
Confidence            99987653 444443

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=97.33  E-value=0.00029  Score=61.81  Aligned_cols=75  Identities=21%  Similarity=0.434  Sum_probs=53.3

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+........+.+|+.+.|.|.+.+.  +.+.|.+++..+.....       +.....+   ....|.|.++..+|.|.
T Consensus         9 p~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~-------~~~~~~~---~~~~L~I~~v~~~D~G~   76 (108)
T 2dm7_A            9 ARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGR-------YSLKQDG---TRCELQIHDLSVADAGE   76 (108)
T ss_dssp             CCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSS-------CEEEEET---TEEEEEESSCCTTTCSE
T ss_pred             CeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCC-------EEEEecC---CEEEEEECCCCcccCEE
Confidence            444444556788899999999998765  78999998776543211       1111111   23569999999999999


Q ss_pred             eeEeecc
Q psy12044        335 FVCVAEN  341 (767)
Q Consensus       335 Y~CvA~N  341 (767)
                      |.|.+.|
T Consensus        77 Y~C~a~n   83 (108)
T 2dm7_A           77 YSCMCGQ   83 (108)
T ss_dssp             EEEEETT
T ss_pred             EEEEEcC
Confidence            9999955

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=97.32  E-value=0.00027  Score=70.82  Aligned_cols=93  Identities=19%  Similarity=0.286  Sum_probs=64.1

Q ss_pred             ceeecccccccccccccccCCCcEEEee----cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLF----DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~----~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      ...+..|..+.|.|.+.+.|.+.+.|.+    ++..+........  ..............+.|.|.++...|.|.|+|.
T Consensus       123 ~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  200 (241)
T 3grw_A          123 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYV--TVLKSWISESVEADVRLRLANVSERDGGEYLCR  200 (241)
T ss_dssp             SEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCE--EEEEEEECSBSEEEEEEEECSCCGGGCEEEEEE
T ss_pred             cceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceee--eeeeEeeeeecCCceEEEECcCCcccCcEEEEE
Confidence            4456789999999999999999999999    5554432221100  000011112233467899999999999999999


Q ss_pred             eccCCCCcccceEEEEEee
Q psy12044        339 AENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~~  357 (767)
                      +.|..|.....+.+.|...
T Consensus       201 a~N~~g~~~~~~~l~V~~~  219 (241)
T 3grw_A          201 ATNFIGVAEKAFWLSVHGP  219 (241)
T ss_dssp             EECSSCEEEEEEEEEC---
T ss_pred             EecCcceEEEEEEEEecCC
Confidence            9999999877777766543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=97.31  E-value=0.00012  Score=71.59  Aligned_cols=77  Identities=17%  Similarity=0.350  Sum_probs=57.5

Q ss_pred             eecccccccccccc-cccCCCcEEEeecCe--eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        265 EIQEGKNVSLLCKV-SAIPEAKITWLFDGV--PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       265 ~v~~G~~vsL~C~a-~g~P~p~itW~~~g~--~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      .+..|..+.|.|.+ .+.|.+.+.|.+++.  .+.....              .....+.|.|.++..+|.|.|+|.|.|
T Consensus       132 ~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~--------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N  197 (214)
T 3jz7_A          132 SEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL--------------AEMTSPVISVKNASSEYSGTYSCTVQN  197 (214)
T ss_dssp             CCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGG--------------GGTTSSEEEECSCCGGGCEEEEEEEEC
T ss_pred             ceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccce--------------eccCCCEEEEecCCHHHCEEEEEEEEc
Confidence            46789999999999 899999999999532  2211100              011234899999999999999999999


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      ..|.....+.+.|.
T Consensus       198 ~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          198 RVGSDQCMLRLDVV  211 (214)
T ss_dssp             SSCEEEEEEEECCB
T ss_pred             CCCcEEEEEEEEEe
Confidence            99988766655543

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=97.31  E-value=0.00023  Score=70.56  Aligned_cols=89  Identities=16%  Similarity=0.285  Sum_probs=61.3

Q ss_pred             eeecccccccccccccccCC--CcEEEeecCeeccCCCc-ccccccceeeccc-CcceeeeEEEEeeeccCCCCceeEee
Q psy12044        264 LEIQEGKNVSLLCKVSAIPE--AKITWLFDGVPIQNESM-SASESHAVYSTEE-GTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~--p~itW~~~g~~l~~~s~-~~~~~~~~~~~~~-g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ..+..|+.++|.|.+.+.|.  +.+.|.+++..+..... ..   . ...... ......+.|.|.++..+|.|.|.|.|
T Consensus       115 ~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~---~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  190 (213)
T 2x1w_L          115 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR---D-LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA  190 (213)
T ss_dssp             EEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEE---E-ECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             eEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEecc---c-cccccCccceeeeEEEEECCCCcccCEEEEEEE
Confidence            47789999999999998654  57999987765322111 00   0 000000 01233568999999999999999999


Q ss_pred             ccCCCCcccceEEEEEe
Q psy12044        340 ENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~~  356 (767)
                      .|..|.....+.+.|..
T Consensus       191 ~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          191 SSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             ECSSCEEEEEEEEEEEC
T ss_pred             ecCCCcEEEEEEEEEec
Confidence            99999887777666653

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=97.31  E-value=0.00026  Score=62.71  Aligned_cols=80  Identities=20%  Similarity=0.399  Sum_probs=55.7

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ......+.+|+.+.|.|.+.+.  |.+.|++++..+.....       +.....+   ....|.|.++..+|.|.|.|.+
T Consensus        25 ~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~-------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a   92 (113)
T 2edh_A           25 GLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDR-------HSLRQDG---ARCELQIRGLVAEDAGEYLCMC   92 (113)
T ss_dssp             CCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSS-------EEEEEET---TEEEEEECSCCSTTCEEEEEEE
T ss_pred             cCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCc-------EEEEECC---CEEEEEECCCChhhCEEEEEEe
Confidence            3445678899999999999775  78999998876643211       1111111   2357999999999999999999


Q ss_pred             ccCCCCcccceEEEEE
Q psy12044        340 ENQAGSTSSNYTIRIV  355 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~  355 (767)
                          |.....+.+.|.
T Consensus        93 ----~~~~~~~~l~V~  104 (113)
T 2edh_A           93 ----GKERTSAMLTVR  104 (113)
T ss_dssp             ----TTEEEEEEEEEC
T ss_pred             ----CCCCEEEEEEEe
Confidence                444445555544

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=97.30  E-value=0.00016  Score=69.52  Aligned_cols=73  Identities=11%  Similarity=0.146  Sum_probs=58.9

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|+.+.|.|.+.+.|.+.+.|.+++..+                    ......|.|.++..+|.|.|+|.|.|..
T Consensus       107 ~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  166 (184)
T 2ny1_B          107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------------------IQGGKTLSVSQLELQDSGTWTCTVLQNQ  166 (184)
T ss_dssp             SEEETTCCEEEEEECCTTCCCEEEEECTTSCE--------------------EEESSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             ceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc--------------------ccCceEEEEecCCcCCCeEEEEEEEECC
Confidence            35678999999999999999999999876433                    1234579999999999999999999988


Q ss_pred             CCcccceEEEEEe
Q psy12044        344 GSTSSNYTIRIVL  356 (767)
Q Consensus       344 G~s~~s~sL~V~~  356 (767)
                      +.....+.+.|..
T Consensus       167 ~~~~~~~~l~V~~  179 (184)
T 2ny1_B          167 KKVEFKIDIVVLA  179 (184)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             ceEEEEEEEEEEe
Confidence            8777666665544

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=97.29  E-value=0.00019  Score=74.76  Aligned_cols=89  Identities=24%  Similarity=0.366  Sum_probs=65.7

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .+....+..|+.+.|.|.+.+.|.+.+.|.+++..+.....     + +....  .......|.|.++...|.|.|.|.+
T Consensus        10 ~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-----~-~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a   81 (305)
T 2nzi_A           10 ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL-----K-YRIQE--FKGGYHQLIIASVTDDDATVYQVRA   81 (305)
T ss_dssp             CCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSS-----S-EEEEE--ETTTEEEEEESSCCGGGCSEEEEEE
T ss_pred             cccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCC-----e-EEEEE--CCCCEEEEEEccCChhhCeEEEEEE
Confidence            34457788999999999999999999999998876643211     0 11110  0112357999999999999999999


Q ss_pred             ccCCCCcccceEEEEEe
Q psy12044        340 ENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~~  356 (767)
                      .|..|.....+.+.|..
T Consensus        82 ~n~~g~~~~~~~l~V~~   98 (305)
T 2nzi_A           82 TNQGGSVSGTASLEVEV   98 (305)
T ss_dssp             EETTEEEEEEEEEEECE
T ss_pred             EcCCCCccceEEEEEec
Confidence            99988876666666654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=97.29  E-value=0.00021  Score=69.19  Aligned_cols=77  Identities=25%  Similarity=0.412  Sum_probs=60.0

Q ss_pred             ccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      +....+..|..+.|.|.+.+.|.+ .+.|.+++..+......               ...+.|.|.++.  |.|.|.|.|
T Consensus       113 ~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~---------------~~~~~L~i~~~~--d~G~Y~C~a  175 (195)
T 2c5d_C          113 PEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH---------------GPQRSLHVPGLN--KTSSFSCEA  175 (195)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS---------------SCCEEEEECCCS--SCEEEEEEE
T ss_pred             CCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc---------------CCCCeEEEcccc--cCceEEEEE
Confidence            334667889999999999999999 99999988766433221               234578888877  789999999


Q ss_pred             ccCCCCcc-cceEEEE
Q psy12044        340 ENQAGSTS-SNYTIRI  354 (767)
Q Consensus       340 ~N~~G~s~-~s~sL~V  354 (767)
                      .|..|... ..+.+.|
T Consensus       176 ~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          176 HNAKGVTTSRTATITV  191 (195)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             EcCCCceEEEEEEEEE
Confidence            99999875 5676665

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=97.29  E-value=0.00017  Score=78.11  Aligned_cols=82  Identities=18%  Similarity=0.486  Sum_probs=63.8

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|+.+.|.|.+.+.|.+.+.|.+++..+.......   . .       ....+.|.|.++..+|.|.|.|.|.|
T Consensus       320 ~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~---~-~-------~~~~~~L~i~~v~~~d~G~Y~C~a~N  388 (404)
T 3p3y_A          320 KNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNP---N-R-------EVAGDTIIFRDTQISSRAVYQCNTSN  388 (404)
T ss_dssp             CCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCT---T-E-------EEETTEEEESSCCSSCCCEEEEEEEE
T ss_pred             CcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCc---e-E-------EecCCEEEEeecCHHHCEEEEEEEEe
Confidence            34567789999999999999999999999988775432210   0 0       11234799999999999999999999


Q ss_pred             CCCCcccceEEEE
Q psy12044        342 QAGSTSSNYTIRI  354 (767)
Q Consensus       342 ~~G~s~~s~sL~V  354 (767)
                      ..|.....+.+.|
T Consensus       389 ~~G~~~~~~~l~V  401 (404)
T 3p3y_A          389 EHGYLLANAFVSV  401 (404)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            9998877766654

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=97.29  E-value=0.00013  Score=70.39  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=58.4

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|..+.|.|.+.+.|.+.+.|.+++..+.....     ..+....      .+.|.|.++...|.|.|.|.|.|
T Consensus       108 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~-----~~~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n  176 (191)
T 1epf_A          108 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD-----VRFIVLS------NNYLQIRGIKKTDEGTYRCEGRI  176 (191)
T ss_dssp             SSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCC-----TTEEECT------TSCEEETTCCGGGCEEEEEEEEE
T ss_pred             CcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCC-----ceEEEec------CCeEEECCCChhhCEEEEEEEEE
Confidence            345677899999999999999999999998877642211     1111111      23699999999999999999999


Q ss_pred             CCCCcccceEE
Q psy12044        342 QAGSTSSNYTI  352 (767)
Q Consensus       342 ~~G~s~~s~sL  352 (767)
                      ..+.......+
T Consensus       177 ~~~~~~~~~~i  187 (191)
T 1epf_A          177 LARGEINFKDI  187 (191)
T ss_dssp             GGGTEEEEEEE
T ss_pred             ecceeEEEEEE
Confidence            87654443333

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=97.28  E-value=0.00032  Score=77.92  Aligned_cols=84  Identities=13%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +..+++.+|+.+.|.|.+.+.|.+.+.|.+++..+......           .........|.|.++..+|.|.|.|.|.
T Consensus        55 ~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~-----------~~~~~~~~sL~I~~v~~~D~G~Y~C~a~  123 (423)
T 3qs7_E           55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHF-----------DLQNRGVVSMVILKMTETQAGEYLLFIQ  123 (423)
T ss_dssp             -CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC----------------CEEEEEESSCCSSSCSEEEEEEE
T ss_pred             cccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCcccee-----------ccccceEEEEEEeecCcccCEEEEEEEE
Confidence            34678999999999999999999999999987655321111           0011123468999999999999999999


Q ss_pred             cCCCCcccceEEEEE
Q psy12044        341 NQAGSTSSNYTIRIV  355 (767)
Q Consensus       341 N~~G~s~~s~sL~V~  355 (767)
                      |..|.....+.+.|.
T Consensus       124 N~~g~~~~~~~l~V~  138 (423)
T 3qs7_E          124 SEATNYTILFTVSIR  138 (423)
T ss_dssp             C--CEEEEEEEEEEC
T ss_pred             cCCCcEEEEEEEEEe
Confidence            999877666655554

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=97.28  E-value=0.00013  Score=78.84  Aligned_cols=72  Identities=21%  Similarity=0.466  Sum_probs=60.4

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|+.+.|.|.+.+.|.+.+.|.+++..+...                    .+.|.|.++...|.|.|.|.|.|.
T Consensus       316 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~--------------------~~~L~i~~v~~~d~G~Y~C~a~N~  375 (388)
T 2v5m_A          316 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------------------ESVLRIESVKKEDKGMYQCFVRND  375 (388)
T ss_dssp             EEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC--------------------SSEEEESSCCGGGCEEEEEEEECS
T ss_pred             cEEecCCCCEEEEEEeccccCCeEEEEECCEECccC--------------------CCEEEEecCChhhCEEEEEEEEcC
Confidence            346778999999999999999999999998766321                    246999999999999999999999


Q ss_pred             CCCcccceEEEE
Q psy12044        343 AGSTSSNYTIRI  354 (767)
Q Consensus       343 ~G~s~~s~sL~V  354 (767)
                      .|.....+.+.|
T Consensus       376 ~G~~~~~~~l~V  387 (388)
T 2v5m_A          376 RESAEASAELKL  387 (388)
T ss_dssp             SCEEEEEEEEEE
T ss_pred             CCcEEEEEEEEe
Confidence            998877666543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.28  E-value=0.00037  Score=66.74  Aligned_cols=94  Identities=23%  Similarity=0.392  Sum_probs=63.8

Q ss_pred             CCCCCCccceeecccccccccccccccC-CCcEEEee---cCeeccCCCcccccccceeecccCcceeeeEEEEeeec-c
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIP-EAKITWLF---DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN-I  329 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~---~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs-~  329 (767)
                      |.+........+..|..+.|.|.+.+.| .+.+.|.+   ++........    ...+.....   ...+.|.|.++. .
T Consensus        84 P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~L~i~~v~~~  156 (184)
T 3b5h_A           84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGS----ESRFFVSSS---QGRSELHIENLNME  156 (184)
T ss_dssp             CCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTG----GGTEEEEEE---TTEEEEEECSCCTT
T ss_pred             CceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCC----CCEEEEEec---CCeeEEEEeecccc
Confidence            3333333445678899999999999999 79999999   3332221100    011111111   123589999999 8


Q ss_pred             CCCCceeEeeccCCCCcccceEEEEE
Q psy12044        330 DDNGTFVCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       330 sD~GtY~CvA~N~~G~s~~s~sL~V~  355 (767)
                      .|.|.|.|.|.|..|.....+.+.|.
T Consensus       157 ~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          157 ADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             TSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccCceEEEEEEeCCCcceEEEEEEEe
Confidence            99999999999999988777666553

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=97.27  E-value=0.0002  Score=69.04  Aligned_cols=83  Identities=16%  Similarity=0.176  Sum_probs=62.4

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeecc-CCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI-DDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~-sD~GtY~CvA~N  341 (767)
                      ...+..|..+.|.|.+.+.|.+.+.|.+++..+......       ....   ......|.|.++.. +|.|.|+|.+.|
T Consensus       112 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~-------~~~~---~~~~~~L~i~~~~~~~d~G~Y~C~a~n  181 (197)
T 3lcy_A          112 KYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENI-------TIEN---TEHYTHLVMKNVQRKTHAGKYKVQLSN  181 (197)
T ss_dssp             EEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSE-------EEEE---CSSEEEEEESSCCHHHHCEEEEEEEEC
T ss_pred             ceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCce-------EEEE---cCCEEEEEEccccchhhCceEEEEEEc
Confidence            345678999999999999999999999988776533211       1111   11236799999984 899999999999


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      ..|.....+.+.|.
T Consensus       182 ~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          182 VFGTVDAILDVEIQ  195 (197)
T ss_dssp             SSCEEEEEEEEEEE
T ss_pred             CcCceEEEEEEEEe
Confidence            99988776666554

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=97.26  E-value=0.00022  Score=73.42  Aligned_cols=87  Identities=16%  Similarity=0.251  Sum_probs=65.3

Q ss_pred             cceeecccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ....+..|..+.|.|.+.+ .|.+.+.|.+++..+......        ..........+.|.|.++..+|.|.|.|.|.
T Consensus       194 ~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~--------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (289)
T 3ejj_X          194 SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNS--------DFQDNYYKKVRALSLNAVDFQDAGIYSCVAS  265 (289)
T ss_dssp             SSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEE--------EECSSSEEEEEEEEESSCCSSSCEEEEEEEE
T ss_pred             CceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCc--------ccccceEEeeEEEEEEeecccCCEEEEEEEE
Confidence            3445578999999999998 789999999988766432111        0012223346789999999999999999999


Q ss_pred             cCCCCcccceEEEEEe
Q psy12044        341 NQAGSTSSNYTIRIVL  356 (767)
Q Consensus       341 N~~G~s~~s~sL~V~~  356 (767)
                      |..|...+++.|.+..
T Consensus       266 N~~G~~~~s~~L~~~~  281 (289)
T 3ejj_X          266 NDVGTRTATMNFQVVE  281 (289)
T ss_dssp             CSSCEEEEEEEEECC-
T ss_pred             cCCCCccccEEEEEEe
Confidence            9999988877776543

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=97.26  E-value=0.00031  Score=68.04  Aligned_cols=93  Identities=17%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             Cccceeeccccccccccccc-ccCCCcEEEeecCeeccCCCcccccccceeecccCccee--eeEEEEeeeccCCCCcee
Q psy12044        260 STFYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIK--KSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~--~s~L~I~nvs~sD~GtY~  336 (767)
                      .+....+.+|+.+.|.|.+. +.|.+.+.|.+++..+......   ...+.....+....  .+.|.|.++...|.|.|.
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   84 (195)
T 2c5d_C            8 NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADST---QTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQ   84 (195)
T ss_dssp             CCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEE---EEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEE
T ss_pred             ChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCC---ceEEEEccccccceeeccEEEEEeccccCCcEEE
Confidence            44566788999999999999 9999999999988776543110   00111111211222  578999999999999999


Q ss_pred             EeeccCCCCcccc-eEEEEE
Q psy12044        337 CVAENQAGSTSSN-YTIRIV  355 (767)
Q Consensus       337 CvA~N~~G~s~~s-~sL~V~  355 (767)
                      |.+.|..|..... +.+.|.
T Consensus        85 C~~~~~~~~~~~~~~~l~V~  104 (195)
T 2c5d_C           85 CLVFLGHQTFVSQPGYVGLE  104 (195)
T ss_dssp             EEEEETTEEEECCCEEEEEC
T ss_pred             EEEEeCCCceecccEEEEEe
Confidence            9999987654433 555554

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=97.25  E-value=0.00022  Score=74.39  Aligned_cols=92  Identities=17%  Similarity=0.326  Sum_probs=62.6

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeecc-CCCCce
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI-DDNGTF  335 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~-sD~GtY  335 (767)
                      +...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+......      ......+   ....|.|.++.. .|.|.|
T Consensus         9 ~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~------~~~~~~~---~~~~L~i~~~~~~~D~G~Y   79 (304)
T 2yd9_A            9 FIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFE------TIEFDES---AGAVLRIQPLRTPRDENVY   79 (304)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEE------EEEETTT---TEEEEEECSCCTTTTCSEE
T ss_pred             eeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceE------EEEecCC---CceEEEEecccccCCCeEE
Confidence            333444567889999999999999999999999988766332111      1111111   136799999997 999999


Q ss_pred             eEeeccCCCCcccceEEEEEee
Q psy12044        336 VCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       336 ~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      .|.+.|..|.....+.+.|...
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~~  101 (304)
T 2yd9_A           80 ECVAQNSVGEITVHAKLTVLRE  101 (304)
T ss_dssp             EEEEECSSCEECCEEEEEEECG
T ss_pred             EEEEECCCCeEEEEEEEEEecc
Confidence            9999999998777777777653

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.25  E-value=0.00042  Score=60.04  Aligned_cols=68  Identities=21%  Similarity=0.419  Sum_probs=51.4

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...+..|+.+.|.|.+. .|.+.+.|++++..+.....       +.....   .....|.|.++...|.|.|.|.+.+
T Consensus        20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~-------~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~~   87 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSK-------VRVEAV---GCTRRLVVQQAGQAEAGEYSCEAGG   87 (102)
T ss_dssp             EEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSS-------EEEEEE---TTEEEEEETTCCTTTCSCEEEEETT
T ss_pred             cEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCC-------EEEEEc---CCEEEEEECCCCcccCEEEEEEcCC
Confidence            45778999999999998 88899999999877643221       111111   1235799999999999999999964

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.25  E-value=0.00036  Score=61.66  Aligned_cols=77  Identities=19%  Similarity=0.473  Sum_probs=55.3

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|+.+.|.|.+. .|.+.+.|++++..+.....       +.....+   ....|.|.++..+|.|.|.|.+.|  
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~-------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n--   89 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPA-------LLLQKED---TVRRLVLPAVQLEDSGEYLCEIDD--   89 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTT-------BEEEECS---SEEEEEESSCCTTTCEEEEEESSS--
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCC-------EEEEECC---CEEEEEECCCCcccCEEEEEEEec--
Confidence            5677899999999985 78899999998877654221       1111111   235799999999999999999998  


Q ss_pred             CCcccceEEEEE
Q psy12044        344 GSTSSNYTIRIV  355 (767)
Q Consensus       344 G~s~~s~sL~V~  355 (767)
                        ....+.+.|.
T Consensus        90 --~~~~~~l~V~   99 (113)
T 2cpc_A           90 --ESASFTVTVT   99 (113)
T ss_dssp             --CEEEEEEEEE
T ss_pred             --CcEEEEEEEe
Confidence              3334445444

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=97.23  E-value=0.00014  Score=78.64  Aligned_cols=76  Identities=22%  Similarity=0.530  Sum_probs=61.6

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|+.+.|.|.+.+.|.+.+.|.+++..+.....        ..       ..+.|.|.++..+|.|.|+|.|.|..
T Consensus       319 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~--------~~-------~~~~L~i~~~~~~d~G~Y~C~a~N~~  383 (395)
T 1bih_A          319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA--------TV-------TDSGLVIKGVKNGDKGYYGCRATNEH  383 (395)
T ss_dssp             EEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSE--------EE-------ETTEEEESSCCSTTCEEEEEEEEETT
T ss_pred             eEecCCCeEEEEEEECcccCCeeEEEECCEECCCCce--------EE-------ECCEEEEeeCCcccCEEEEEEEEccC
Confidence            5677899999999999999999999999887654311        11       12379999999999999999999999


Q ss_pred             CCcccceEEEE
Q psy12044        344 GSTSSNYTIRI  354 (767)
Q Consensus       344 G~s~~s~sL~V  354 (767)
                      |.....+.+.|
T Consensus       384 G~~~~~~~l~V  394 (395)
T 1bih_A          384 GDKYFETLVQV  394 (395)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CCceEEEEEEE
Confidence            98877666654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=97.22  E-value=0.0002  Score=73.68  Aligned_cols=88  Identities=20%  Similarity=0.327  Sum_probs=66.1

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      ..+....+..|+.+.|.|.+.+.|.+.+.|.+++..+......     ....     ......|.|.++...|.|.|.|.
T Consensus        10 ~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~-----~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~   79 (284)
T 2rik_A           10 LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY-----KMTL-----VENTATLTVLKVTKGDAGQYTCY   79 (284)
T ss_dssp             ECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSE-----EEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             ccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcE-----EEEE-----cCCEEEEEEecCCcccCEEEEEE
Confidence            3344567889999999999999999999999988776432211     0111     11246899999999999999999


Q ss_pred             eccCCCCcccceEEEEEe
Q psy12044        339 AENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~  356 (767)
                      +.|..|.....+.+.|..
T Consensus        80 ~~n~~g~~~~~~~l~V~~   97 (284)
T 2rik_A           80 ASNVAGKDSCSAQLGVQE   97 (284)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCceEEEEEEEEccC
Confidence            999988876666666654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=97.21  E-value=0.00049  Score=66.11  Aligned_cols=89  Identities=20%  Similarity=0.355  Sum_probs=63.5

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +........+..|+.+.|.|.+.+.|.+.+.|.+++..+.....      .+....     ....|.|.++...|.|.|.
T Consensus        10 i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~------~~~~~~-----~~~~L~i~~~~~~d~G~Y~   78 (192)
T 2iep_A           10 ITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT------RYSIRE-----NGQLLTILSVEDSDDGIYC   78 (192)
T ss_dssp             ESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCT------TEEEEG-----GGTEEEESSCCGGGCEEEE
T ss_pred             eecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCc------cEEEcC-----CccEEEEcCCCcccCeEEE
Confidence            33344456788999999999999999999999998876643211      111111     1246999999999999999


Q ss_pred             EeeccCCCCc-ccceEEEEEe
Q psy12044        337 CVAENQAGST-SSNYTIRIVL  356 (767)
Q Consensus       337 CvA~N~~G~s-~~s~sL~V~~  356 (767)
                      |.+.|..|.. ...+.+.+..
T Consensus        79 C~~~~~~~~~~~~~~~l~v~~   99 (192)
T 2iep_A           79 CTANNGVGGAVESCGALQVKM   99 (192)
T ss_dssp             EEEECSSSCCEEEEEEEEEEE
T ss_pred             EEEEcCCCceeEeEEEEEEEe
Confidence            9999988774 3344555543

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.20  E-value=0.00046  Score=72.87  Aligned_cols=92  Identities=23%  Similarity=0.379  Sum_probs=65.2

Q ss_pred             cceeecccccccccccccccCCCcEEEee----cCeeccCCCcccccccceeeccc-C---cceeeeEEEEeeeccCCCC
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLF----DGVPIQNESMSASESHAVYSTEE-G---TEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~----~g~~l~~~s~~~~~~~~~~~~~~-g---~~~~~s~L~I~nvs~sD~G  333 (767)
                      ....+..|..+.|.|.+.+.|.+.+.|.+    ++..+......     ....... +   .....+.|.|.++...|.|
T Consensus       230 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  304 (334)
T 1ry7_B          230 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTP-----YVTVLKTAGANTTDKELEVLSLHNVTFEDAG  304 (334)
T ss_dssp             CCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSB-----CCCCCCCSSCSCSCTTCCCEEECSCCTTSCS
T ss_pred             CceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCe-----eEEEeecCccccccccccEEEEccCCHHHCE
Confidence            34567889999999999999999999998    45444322110     0000100 0   0112347999999999999


Q ss_pred             ceeEeeccCCCCcccceEEEEEeec
Q psy12044        334 TFVCVAENQAGSTSSNYTIRIVLKE  358 (767)
Q Consensus       334 tY~CvA~N~~G~s~~s~sL~V~~~~  358 (767)
                      .|+|.|.|..|.....+.+.|...+
T Consensus       305 ~Y~C~a~N~~G~~~~~~~l~V~~~~  329 (334)
T 1ry7_B          305 EYTCLAGNSIGFSHHSAWLVVLPAE  329 (334)
T ss_dssp             EEEEEEEESSCCEEEEEEEEEECSC
T ss_pred             EEEEEEeCCCCeEEEEEEEEEEECC
Confidence            9999999999998888877776543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=97.20  E-value=0.00019  Score=74.70  Aligned_cols=78  Identities=24%  Similarity=0.334  Sum_probs=61.3

Q ss_pred             eeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+..|..+.|.|.+.+.|.+ .+.|.+++..+......       ..     ......|.|.++..+|.|.|.|.|.|.
T Consensus       231 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~-------~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~N~  298 (312)
T 2y23_A          231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH-------DF-----KDGICTLLITEFSKKDAGIYEVILKDD  298 (312)
T ss_dssp             EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----------------CEEEEEECSCSGGGCEEEEEEEEST
T ss_pred             EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcE-------EE-----ECCEEEEEECcCCHHHCEEEEEEEEcC
Confidence            467799999999999999988 99999998777532111       00     122468999999999999999999999


Q ss_pred             CCCcccceEEE
Q psy12044        343 AGSTSSNYTIR  353 (767)
Q Consensus       343 ~G~s~~s~sL~  353 (767)
                      .|.....+.|.
T Consensus       299 ~G~~~~~~~l~  309 (312)
T 2y23_A          299 RGKDKSRLKLV  309 (312)
T ss_dssp             TCCEEEEEEEC
T ss_pred             CCceeeeeEEE
Confidence            99887766554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=97.20  E-value=0.00015  Score=77.37  Aligned_cols=90  Identities=17%  Similarity=0.301  Sum_probs=40.2

Q ss_pred             eeccccccccccccc----ccCCCcEEEeecCeeccCCC-cccccccceeecccCcceeeeEEEEeeeccCCC-CceeEe
Q psy12044        265 EIQEGKNVSLLCKVS----AIPEAKITWLFDGVPIQNES-MSASESHAVYSTEEGTEIKKSELLIYNSNIDDN-GTFVCV  338 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~----g~P~p~itW~~~g~~l~~~s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~-GtY~Cv  338 (767)
                      .+..|..+.|.|.+.    +.|.+.+.|.+++..+.... ....... ......+.....+.|.|.++..+|. |.|.|.
T Consensus       237 ~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~  315 (349)
T 4dep_C          237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINES-ISHSRTEDETRTQILSIKKVTSEDLKRSYVCH  315 (349)
T ss_dssp             --------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEE-EECCTTCCEEEEECC-------------CEEE
T ss_pred             EEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccc-eeeecCCCcEEEEEEEEeeccHHHcCCcEEEE
Confidence            677899999999998    57889999999887765411 1100000 0011112233456799999999999 999999


Q ss_pred             eccCCCCcccceEEEEE
Q psy12044        339 AENQAGSTSSNYTIRIV  355 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~  355 (767)
                      |.|..|.....+.+.|.
T Consensus       316 a~N~~G~~~~~~~l~v~  332 (349)
T 4dep_C          316 ARSAKGEVAKAAKVKQK  332 (349)
T ss_dssp             EECSSCEEEEECC----
T ss_pred             EEcCCCcEEEEEEEeee
Confidence            99999998887777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.19  E-value=0.0001  Score=71.61  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=18.1

Q ss_pred             CccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         76 NLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        76 ~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      +|+.|+|++|.|+...-..+.++++|+.|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4555666665555443344455555555555555

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=97.18  E-value=0.00028  Score=70.64  Aligned_cols=85  Identities=24%  Similarity=0.477  Sum_probs=64.8

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+.+|+.+.|.|.+.+.|.+.+.|.+++..+.......    ...     .......|.|.++...|.|.|.|.+.|.
T Consensus        24 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~----~~~-----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   94 (241)
T 3grw_A           24 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG----GIK-----LRHQQWSLVMESVVPSDRGNYTCVVENK   94 (241)
T ss_dssp             EEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTT----CCE-----EEGGGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             ceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCccc----cee-----eeccceEEEEEeCCcccCEEEEEEEeec
Confidence            4677899999999999999999999999887764322110    000     1122357999999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus        95 ~~~~~~~~~l~V~~  108 (241)
T 3grw_A           95 FGSIRQTYTLDVLE  108 (241)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCceEEEEEEEEec
Confidence            88877777777665

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=97.17  E-value=0.00031  Score=67.06  Aligned_cols=75  Identities=24%  Similarity=0.338  Sum_probs=57.4

Q ss_pred             ccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .....+..|..+.|.|.+.+.|.| .+.|.+++..+.....                 ....|.|.++  .|.|.|+|.|
T Consensus       105 ~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-----------------~~~~L~i~~~--~d~G~Y~C~a  165 (182)
T 1rhf_A          105 PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-----------------SPSVLNVTGV--TQSTMFSCEA  165 (182)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-----------------SSEEEEECCC--SSCEEEEEEE
T ss_pred             CcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-----------------CceEEEEecc--ccCeEEEEEE
Confidence            344677889999999999999999 9999998876633211                 3457888887  5899999999


Q ss_pred             ccCCCCccc-ceEEEE
Q psy12044        340 ENQAGSTSS-NYTIRI  354 (767)
Q Consensus       340 ~N~~G~s~~-s~sL~V  354 (767)
                      .|..|...+ .+.+.|
T Consensus       166 ~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          166 HNLKGLASSRTATVHL  181 (182)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             ECCCCCcccceEEEEe
Confidence            999987743 555543

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=97.17  E-value=0.00039  Score=67.85  Aligned_cols=89  Identities=17%  Similarity=0.163  Sum_probs=60.7

Q ss_pred             cceeecccccccccccccccCC-----CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPE-----AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~-----p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      ....+.+|+.+.|.|.+.+.+.     +.+.|.+.+.......      ....+...........|.|.++..+|.|.|.
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~------~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   83 (202)
T 3bp6_B           10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQS------ERATLLEEQLPLGKALFHIPSVQVRDSGQYR   83 (202)
T ss_dssp             SEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBC------SSCEECGGGGGGTEEEEEECSCCGGGCEEEE
T ss_pred             cCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccC------CceEEeeccccCCeeEEEECCCCHHHCcEEE
Confidence            3567889999999999999876     8899999332221110      1111222222234578999999999999999


Q ss_pred             EeeccCCCCcccceEEEEEe
Q psy12044        337 CVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V~~  356 (767)
                      |.+.|..|.....+.+.|..
T Consensus        84 C~~~~~~~~~~~~~~l~V~~  103 (202)
T 3bp6_B           84 CLVICGAAWDYKYLTVKVKA  103 (202)
T ss_dssp             EEEEETTEEEEEEEEEEEEB
T ss_pred             EEEEeCCCcceEEEEEEecC
Confidence            99999888766666666554

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=97.15  E-value=0.00015  Score=78.65  Aligned_cols=81  Identities=26%  Similarity=0.403  Sum_probs=63.3

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|..+.|.|.+.+.|.+.+.|.+++..+......       ..      ...+.|.|.++...|.|.|.|.|.|
T Consensus       320 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-------~~------~~~~~L~i~~v~~~d~G~Y~C~a~N  386 (403)
T 3laf_A          320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYF-------QI------VGGSNLRILGVVKSDEGFYQCVAEN  386 (403)
T ss_dssp             CCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSE-------EE------ETTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             cceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcE-------EE------ecCccEEEeccccccCEEEEEEEEc
Confidence            3455678999999999999999999999998776433211       11      1235699999999999999999999


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      ..|.....+.+.|.
T Consensus       387 ~~G~~~~~~~l~V~  400 (403)
T 3laf_A          387 EAGNAQSSAQLIVP  400 (403)
T ss_dssp             TTEEEEEEEEEECC
T ss_pred             CCceEEEEEEEEEe
Confidence            99988877766543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=97.15  E-value=0.0005  Score=68.24  Aligned_cols=83  Identities=23%  Similarity=0.350  Sum_probs=64.5

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      +.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...                   ....|.|.++...|.|.
T Consensus        19 ~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-------------------~~~~L~i~~v~~~d~G~   79 (218)
T 3k0w_A           19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-------------------NTSELIFNAVHVKDAGF   79 (218)
T ss_dssp             CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-------------------CSSEEEETTCCGGGCEE
T ss_pred             CEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-------------------CCCEEEEccCChhhCeE
Confidence            34444555678889999999999999999999999987665322                   13579999999999999


Q ss_pred             eeEeeccCCCCc-ccceEEEEEe
Q psy12044        335 FVCVAENQAGST-SSNYTIRIVL  356 (767)
Q Consensus       335 Y~CvA~N~~G~s-~~s~sL~V~~  356 (767)
                      |.|.+.|..|.. ...+.+.|..
T Consensus        80 Y~C~~~n~~~~~~s~~~~l~V~~  102 (218)
T 3k0w_A           80 YVCRVNNNFTFEFSQWSQLDVCD  102 (218)
T ss_dssp             EEEEEECTTCCEECCCEEEEEEC
T ss_pred             eEEEEEcCCCCceeeEEEEEEEc
Confidence            999999987754 3345665554

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=97.14  E-value=0.00022  Score=74.43  Aligned_cols=78  Identities=21%  Similarity=0.364  Sum_probs=57.4

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.|.+.|.+++..+......              ......|.+.++  .|.|.|+|.|.|.
T Consensus       214 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~--------------~~~~~~L~i~~~--~d~G~Y~C~a~N~  277 (304)
T 2yd9_A          214 SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM--------------PVGRNVLELTDV--KDSANYTCVAMSS  277 (304)
T ss_dssp             CBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSC--------------CBSEEEEEECSC--CSCEEEEEEEEET
T ss_pred             ceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccc--------------cCCcEEEEEccc--ccCEEEEEEEEeC
Confidence            456788999999999999999999999998776543211              112234666555  6899999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus       278 ~G~~~~~~~l~V~~  291 (304)
T 2yd9_A          278 LGVIEAVAQITVKS  291 (304)
T ss_dssp             TEEEEEEEEEC---
T ss_pred             CCcEEEEEEEEEec
Confidence            99887776666554

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=97.13  E-value=0.00028  Score=70.16  Aligned_cols=91  Identities=16%  Similarity=0.231  Sum_probs=61.0

Q ss_pred             ceeecccccccccc---cccccCCCcEEEeecCeeccCCCcc--------ccc--ccceeecccCcceeeeEEEEeeecc
Q psy12044        263 YLEIQEGKNVSLLC---KVSAIPEAKITWLFDGVPIQNESMS--------ASE--SHAVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       263 ~~~v~~G~~vsL~C---~a~g~P~p~itW~~~g~~l~~~s~~--------~~~--~~~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      .+++..|+.++|.|   .+.+.|.+.+.|++++.........        ...  ...+...   .......|.|.++..
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~v~~   78 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH---RSANTFFLVVTAANI   78 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEE---EETTEEEEEESSCCG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEE---EcCCEEEEEEccCCH
Confidence            35678999999999   4678899999999865432111000        000  0000000   011245799999999


Q ss_pred             CCCCceeEeeccCCCCcccceEEEEEe
Q psy12044        330 DDNGTFVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       330 sD~GtY~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      +|.|.|.|.+.|..|.....+.+.|..
T Consensus        79 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~  105 (203)
T 4fa8_A           79 SHDGNYLCRMKLGETEVTKQEHLSVVK  105 (203)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             HHCeEEEEEEEcCCCcEEEEEEEEecC
Confidence            999999999999988887777776654

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=97.13  E-value=0.00033  Score=59.17  Aligned_cols=59  Identities=20%  Similarity=0.493  Sum_probs=47.1

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeee-ccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS-NIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nv-s~sD~GtY~CvA~  340 (767)
                      ....+..|..++|.|.+.+.|.  |+|.+++..+...                   ..+.|.|.++ ..+|.|.|+|.|.
T Consensus         7 ~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~-------------------~~~~L~I~~v~~~~DsG~Y~C~A~   65 (82)
T 3r08_E            7 EYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK-------------------HDKHLVLQDFSEVEDSGYYVCYTP   65 (82)
T ss_dssp             CCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTC-------------------CSSCCBCCSCCTTTTCSCEEEECS
T ss_pred             ceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC-------------------CCCEEEECccCccCcCEEEEEEEc
Confidence            3455678999999999999984  9999998776432                   1246889996 7899999999997


Q ss_pred             c
Q psy12044        341 N  341 (767)
Q Consensus       341 N  341 (767)
                      +
T Consensus        66 t   66 (82)
T 3r08_E           66 A   66 (82)
T ss_dssp             S
T ss_pred             c
Confidence            6

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=97.13  E-value=0.00075  Score=58.85  Aligned_cols=92  Identities=18%  Similarity=0.319  Sum_probs=57.2

Q ss_pred             eeecccccccccccccccCC---CcEEEeecCeec--------c-CCC-cccccccceeecccCcceeeeEEEEeeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPE---AKITWLFDGVPI--------Q-NES-MSASESHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~---p~itW~~~g~~l--------~-~~s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      +.+..|+.++|.|...+.+.   ..+.|.+.....        . ... ........+.+. .........|.|.++..+
T Consensus         4 v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~-~~~~~~~~sL~I~~v~~~   82 (109)
T 2oyp_A            4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK-GDLNKGDVSLIIKNVTLD   82 (109)
T ss_dssp             EEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEEC-SCGGGTBCCEEECSCCGG
T ss_pred             EEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEc-cCccCCcEeEEEccCCCh
Confidence            46778999999999877643   348999854210        0 000 000001111111 112233468999999999


Q ss_pred             CCCceeEeeccCCCCcccceEEEEEe
Q psy12044        331 DNGTFVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       331 D~GtY~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      |.|.|.|.+.+..+.....+.+.|.+
T Consensus        83 D~G~Y~C~v~~~~~~~~~~~~l~V~V  108 (109)
T 2oyp_A           83 DHGTYCCRIQFPGLMNDKKLELKLDI  108 (109)
T ss_dssp             GCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred             hCeEEEEEEEcCCcccceEEEEEEEe
Confidence            99999999999877666666665543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=97.11  E-value=0.00039  Score=67.07  Aligned_cols=77  Identities=21%  Similarity=0.351  Sum_probs=59.9

Q ss_pred             eeecc-cccccccccccccCC--CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        264 LEIQE-GKNVSLLCKVSAIPE--AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       264 ~~v~~-G~~vsL~C~a~g~P~--p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ..+.+ |+.+.|.|.+.+.+.  +.+.|.+++..+......               .....|.|.++...|.|.|.|.+.
T Consensus        12 ~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~---------------~~~~~L~i~~~~~~d~G~Y~C~~~   76 (190)
T 2wv3_A           12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN---------------ASNMEYRINKPRAEDSGEYHCVYH   76 (190)
T ss_dssp             EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC---------------CSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE---------------eccEEEEEecCCcccCEEEEEEEE
Confidence            34445 999999999998887  899999988776543221               134689999999999999999999


Q ss_pred             cCCCCcccceEEEEEe
Q psy12044        341 NQAGSTSSNYTIRIVL  356 (767)
Q Consensus       341 N~~G~s~~s~sL~V~~  356 (767)
                      |. |.....+.+.|..
T Consensus        77 n~-~~~~~~~~l~V~~   91 (190)
T 2wv3_A           77 FV-SAPKANATIEVKA   91 (190)
T ss_dssp             ET-TEEEEEEEEEEEC
T ss_pred             eC-CcccccEEEEEec
Confidence            98 7666666666654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=97.09  E-value=0.00017  Score=75.34  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=58.7

Q ss_pred             eeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+..|+.+.|.|.+.+.|.| .+.|.+++..+......               .....|.|.++..+|.|.|.|.|.|.
T Consensus       222 ~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~---------------~~~~~l~i~~v~~~d~G~Y~C~A~N~  286 (308)
T 4fom_A          222 NWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLA---------------SDNTLHFVHPLTFNYSGVYICKVTNS  286 (308)
T ss_dssp             CEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBC---------------STTEEECCSCCCSCCCSEEEEEEEET
T ss_pred             eeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEE---------------cCCeEEEECCCChhhCEEEEEEEEeC
Confidence            345567889999999999988 69999987655432211               11234667889999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus       287 ~G~~~~~~~l~V~~  300 (308)
T 4fom_A          287 LGQRSDQKVIYISD  300 (308)
T ss_dssp             TEEEEEEEECCEEC
T ss_pred             CCcEEEEEEEEEEc
Confidence            99887776665543

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=97.09  E-value=0.0007  Score=62.38  Aligned_cols=94  Identities=15%  Similarity=0.254  Sum_probs=59.2

Q ss_pred             cceeecccccccccccccccC---CCcEEEeecCe--ecc---CCC-c----ccccccceeecccCcceeeeEEEEeeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIP---EAKITWLFDGV--PIQ---NES-M----SASESHAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P---~p~itW~~~g~--~l~---~~s-~----~~~~~~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      ..+.+..|+.+.|.|.+...+   .+.+.|.+.+.  .+.   ... .    ......++.+...........|.|.++.
T Consensus        14 ~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~   93 (139)
T 1pko_A           14 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   93 (139)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCC
Confidence            356788999999999987654   36899998653  111   000 0    0000111222222222345689999999


Q ss_pred             cCCCCceeEeeccCCCCcccceEEEEE
Q psy12044        329 IDDNGTFVCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       329 ~sD~GtY~CvA~N~~G~s~~s~sL~V~  355 (767)
                      .+|.|.|.|.+.+..|.....+.|.|.
T Consensus        94 ~~D~G~Y~C~v~~~~~~~~~~~~L~V~  120 (139)
T 1pko_A           94 FSDEGGYTCFFRDHSYQEEAAVELKVE  120 (139)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             HHHCEEEEEEEEcCCCceEEEEEEEEe
Confidence            999999999999988765555666655

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=97.07  E-value=0.00038  Score=68.53  Aligned_cols=95  Identities=26%  Similarity=0.470  Sum_probs=63.7

Q ss_pred             CCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       256 ~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      .+...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+......   ..... ...+  .....+.|.++...|.|.|
T Consensus        11 ~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~---~~~~~-~~~~--~~~~~l~i~~v~~~d~G~Y   84 (217)
T 2vr9_A           11 RIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK---SHRVQ-FKDG--ALFFYRTMQGKKEQDGGEY   84 (217)
T ss_dssp             EEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSS---SSEEE-CTTS--CEEESSCCBSSSCBCCEEE
T ss_pred             EEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCcc---ceeEE-ecCC--ceEEEEEeccCCcccCceE
Confidence            3333445577889999999999999999999999988776543211   01011 1111  1122346788899999999


Q ss_pred             eEeeccCCCCcc-cceEEEEEe
Q psy12044        336 VCVAENQAGSTS-SNYTIRIVL  356 (767)
Q Consensus       336 ~CvA~N~~G~s~-~s~sL~V~~  356 (767)
                      .|.+.|..|... ..+.+.+..
T Consensus        85 ~C~~~n~~g~~~~~~~~l~v~~  106 (217)
T 2vr9_A           85 WCVAKNRVGQAVSRHASLQIAV  106 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEECE
T ss_pred             EEEEecCCCccccccceEEEEE
Confidence            999999887653 355555554

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=97.06  E-value=0.00065  Score=67.02  Aligned_cols=79  Identities=19%  Similarity=0.257  Sum_probs=56.3

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+.+|+.+.|.|.+.+.|.|.+.|.+.......        .....     ......|.|.++...|.|.|.|.|.|..|
T Consensus        12 ~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--------~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   78 (202)
T 1vca_A           12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--------GKVTN-----EGTTSTLTMNPVSFGNEHSYLCTATCESR   78 (202)
T ss_dssp             EEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--------SEEEE-----ETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             EEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--------ceEEE-----cCCccEEEECcCCHHHCEEEEEEEEECCc
Confidence            345899999999999999999999873211000        00000     01234699999999999999999999988


Q ss_pred             CcccceEEEEEe
Q psy12044        345 STSSNYTIRIVL  356 (767)
Q Consensus       345 ~s~~s~sL~V~~  356 (767)
                      .....+.+.|..
T Consensus        79 ~~~~~~~l~V~~   90 (202)
T 1vca_A           79 KLEKGIQVEIYS   90 (202)
T ss_dssp             EEEEEEEEEEEB
T ss_pred             eEeeEEEEEEEe
Confidence            766666666654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=97.05  E-value=0.00042  Score=79.76  Aligned_cols=87  Identities=22%  Similarity=0.350  Sum_probs=66.0

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .+....+.+|..+.|.|.+.+.|.|.+.|.+++..+.....       +.....   .....|.|.++..+|.|.|.|.|
T Consensus       390 ~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~-------~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~A  459 (570)
T 3b43_A          390 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK-------YKIMSE---NFLTSIHILNVDSADIGEYQCKA  459 (570)
T ss_dssp             CCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSS-------EEEEEE---TTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCC-------EEEEEc---CCEEEEEECCCChhhCEEEEEEE
Confidence            34455677899999999999999999999999887653321       111111   12357999999999999999999


Q ss_pred             ccCCCCcccceEEEEEe
Q psy12044        340 ENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~~  356 (767)
                      .|..|.....+.+.+..
T Consensus       460 ~N~~G~~~~~~~l~v~~  476 (570)
T 3b43_A          460 SNDVGSDTCVGSITLKA  476 (570)
T ss_dssp             ECSSCEEEEEEEEEECC
T ss_pred             EECCCeEEEEEEEEecc
Confidence            99999887776666543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.04  E-value=0.00028  Score=70.93  Aligned_cols=85  Identities=19%  Similarity=0.384  Sum_probs=56.2

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCccc-------ccccceeeccc--Cc--ceeeeEEEEeeeccCC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA-------SESHAVYSTEE--GT--EIKKSELLIYNSNIDD  331 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~-------~~~~~~~~~~~--g~--~~~~s~L~I~nvs~sD  331 (767)
                      ...+.+|..+.|.|.+.+.|.|.+.|.+++..+.......       ...........  ..  ......|.|.++..+|
T Consensus       145 ~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D  224 (250)
T 2fbo_J          145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITD  224 (250)
T ss_dssp             EEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGG
T ss_pred             eEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCccc
Confidence            3556679999999999999999999999877664321100       00000000000  00  0123689999999999


Q ss_pred             CCceeEeeccCCCCcc
Q psy12044        332 NGTFVCVAENQAGSTS  347 (767)
Q Consensus       332 ~GtY~CvA~N~~G~s~  347 (767)
                      .|.|+|.|.|..|...
T Consensus       225 ~G~Y~C~a~N~~g~~g  240 (250)
T 2fbo_J          225 AGRVWCELATGQGELD  240 (250)
T ss_dssp             CEEEEEEEESSSSGGG
T ss_pred             CEEEEEEecCCccccC
Confidence            9999999999777443

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=97.04  E-value=0.00082  Score=65.40  Aligned_cols=97  Identities=19%  Similarity=0.364  Sum_probs=63.8

Q ss_pred             ccceeecccccccccccccccC----CCcEEEeecCeec----------cCCCccc----ccccceeecccCcceeeeEE
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP----EAKITWLFDGVPI----------QNESMSA----SESHAVYSTEEGTEIKKSEL  322 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P----~p~itW~~~g~~l----------~~~s~~~----~~~~~~~~~~~g~~~~~s~L  322 (767)
                      ...+.+.+|+.+.|.|.+.+.+    .+.+.|.+.+...          .+.....    .......+...........|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            3456788999999999999877    4699998832111          0100000    00111222222233345789


Q ss_pred             EEeeeccCCCCceeEeeccCCCCcccceEEEEEee
Q psy12044        323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       323 ~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      .|.++...|.|.|.|.+.|..|.....+.+.|...
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~  121 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK  121 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcC
Confidence            99999999999999999998887766676666543

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=97.03  E-value=0.00051  Score=66.87  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=56.9

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+..|+.++|.|.+.+ +.+.+.|++++..+......           .........|.|.++..+|.|.|.|.+.|..|
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-----------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQN-----------PLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG   82 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEEC-----------CCSSSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccc-----------cccCCceEEEEeccCCcccCceEEEEEeCCCc
Confidence            5778999999999988 77899999987655321110           00012346799999999999999999999987


Q ss_pred             Cc--ccceEEEEE
Q psy12044        345 ST--SSNYTIRIV  355 (767)
Q Consensus       345 ~s--~~s~sL~V~  355 (767)
                      ..  ...+.+.|.
T Consensus        83 ~~~~s~~~~l~V~   95 (196)
T 3p2t_A           83 WSQPSDPLELVMT   95 (196)
T ss_dssp             EBCCCCCEEEEEE
T ss_pred             ccCCCccEEEEec
Confidence            33  334555554

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=97.03  E-value=0.0012  Score=65.78  Aligned_cols=90  Identities=17%  Similarity=0.255  Sum_probs=58.2

Q ss_pred             ceeecccccccccccccccCCC---cEEEeecCeecc-----CCC-----cccccccceeecccCcceeeeEEEEeeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEA---KITWLFDGVPIQ-----NES-----MSASESHAVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p---~itW~~~g~~l~-----~~s-----~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      .+.+..|+.+.|.|.+.+.+.+   .+.|.+++....     +..     .......+..............|.|.++..
T Consensus        13 pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~   92 (226)
T 4f80_A           13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA   92 (226)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence            4567899999999998776554   689988542110     000     000011112223333444567899999999


Q ss_pred             CCCCceeEeeccCCCCcccceEE
Q psy12044        330 DDNGTFVCVAENQAGSTSSNYTI  352 (767)
Q Consensus       330 sD~GtY~CvA~N~~G~s~~s~sL  352 (767)
                      +|.|.|.|.+.|..|.....+.+
T Consensus        93 ~D~G~Y~C~a~n~~~~~~~~v~~  115 (226)
T 4f80_A           93 SDSGKYLCYFQDGDFYEKALVEL  115 (226)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEE
T ss_pred             HHCeeEEEEEECCCcEEEEEEEE
Confidence            99999999999987766554433

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=97.01  E-value=0.00046  Score=67.37  Aligned_cols=96  Identities=22%  Similarity=0.397  Sum_probs=63.3

Q ss_pred             CCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        258 TPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       258 ~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      ...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+........ .. ......+ ......|.+.++...|.|.|.|
T Consensus        13 ~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C   89 (212)
T 2v9r_A           13 VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR-SH-RMLLPSG-SLFFLRIVHGRKSRPDEGVYVC   89 (212)
T ss_dssp             EECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTT-CS-EEECTTS-CEEESSCCCCSSCCCSCEEEEE
T ss_pred             ecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccc-cc-eEEecCC-cEEEEEEEecCCCcccCeEEEE
Confidence            3344456788999999999999999999999998877654322110 01 1111111 1112345566778999999999


Q ss_pred             eeccCCCCc-ccceEEEEEe
Q psy12044        338 VAENQAGST-SSNYTIRIVL  356 (767)
Q Consensus       338 vA~N~~G~s-~~s~sL~V~~  356 (767)
                      .+.|..|.. ...+.+.|..
T Consensus        90 ~~~n~~g~~~~~~~~l~V~~  109 (212)
T 2v9r_A           90 VARNYLGEAVSHDASLEVAI  109 (212)
T ss_dssp             EEEETTEEEECCCEEEEECE
T ss_pred             EEECCCCceeecceEEEEEe
Confidence            999988765 3456666654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=97.00  E-value=0.00051  Score=78.58  Aligned_cols=80  Identities=18%  Similarity=0.281  Sum_probs=62.4

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+.+|..+.|.|.+.+.|.|.+.|.+++..+......              ......|.|.++..+|.|.|+|.|.|.
T Consensus       335 ~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~--------------~~~~~~L~I~~v~~~D~G~YtC~A~N~  400 (527)
T 3qs9_E          335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG--------------LDNGYSISKFCNHKHQPGEYIFHAEND  400 (527)
T ss_dssp             EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB--------------CSSSSEEEEECCCTTCCSCEEEEEEET
T ss_pred             cEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCccc--------------ccCCcEEEEecCCcccCEEEEEEEEeC
Confidence            356778999999999999999999999998877543211              012346899999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus       401 ~g~~~~~~~L~V~~  414 (527)
T 3qs9_E          401 DAQFTKMFTLNIRR  414 (527)
T ss_dssp             TEEEEEEEEEC--C
T ss_pred             CCcEEEEEEEEEec
Confidence            99887766666543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=96.99  E-value=0.00041  Score=67.40  Aligned_cols=62  Identities=24%  Similarity=0.418  Sum_probs=50.5

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+..|..+.|.|.+   |.|.+.|.+++..+.....                 ....|.|.++..+|.|.|+|.|.|..|
T Consensus       118 ~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-----------------~~~~L~i~~v~~~D~G~Y~C~a~N~~g  177 (186)
T 1jbj_A          118 GSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-----------------TKNTWNLGNNAKDPRGTYQCQGAKETS  177 (186)
T ss_dssp             CCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-----------------CSSCCEEEETTSCCEEEEEEEESSCEE
T ss_pred             ecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-----------------CcceEEECCCCcCcCEEEEEEEEcCcC
Confidence            34589999999998   8899999999887642211                 235689999999999999999999887


Q ss_pred             Cc
Q psy12044        345 ST  346 (767)
Q Consensus       345 ~s  346 (767)
                      ..
T Consensus       178 ~~  179 (186)
T 1jbj_A          178 NP  179 (186)
T ss_dssp             EE
T ss_pred             Cc
Confidence            64

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=96.98  E-value=0.00032  Score=68.25  Aligned_cols=97  Identities=18%  Similarity=0.356  Sum_probs=60.8

Q ss_pred             CCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        258 TPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       258 ~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      ...+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+...........  .............|.|.++...|.|.|.|
T Consensus         8 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C   85 (209)
T 1nbq_A            8 HSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKIT--ASYEDRVTFLPTGITFKSVTREDTGTYTC   85 (209)
T ss_dssp             ECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEEC--TTTTTTCEEETTEEECSCCCTTSCSEEEE
T ss_pred             EcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccC--ccccCceEeeccEEEEeeCCHHHCcEEEE
Confidence            3444566788999999999999999999999996544211000000000  00000111112679999999999999999


Q ss_pred             eeccCCCCcccceEEEEEe
Q psy12044        338 VAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       338 vA~N~~G~s~~s~sL~V~~  356 (767)
                      .+.+..|.......+.+.+
T Consensus        86 ~~~~~~g~~~~~~~~~l~V  104 (209)
T 1nbq_A           86 MVSEEGGNSYGEVKVKLIV  104 (209)
T ss_dssp             EEEETTSSCEECCEEECCE
T ss_pred             EEecCCCCccceEEEEEEE
Confidence            9999876444334444333

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=96.97  E-value=0.00052  Score=65.53  Aligned_cols=75  Identities=20%  Similarity=0.331  Sum_probs=55.3

Q ss_pred             eeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+..|+.+.|.|.+ .+.|.+.+.|.+++..+...                  .....|.|.++..+|.|.|+|.+.|.
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~  156 (176)
T 1f2q_A           95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------------------YENHNISITNATVEDSGTYYCTGKVW  156 (176)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC------------------CCSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             ceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee------------------cCCCeEEECCCCcccCEEEEEEEEeC
Confidence            456789999999999 46677899999988766311                  11357999999999999999999996


Q ss_pred             CCC-cccceEEEEEe
Q psy12044        343 AGS-TSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~-s~~s~sL~V~~  356 (767)
                      .+. ....+.+.|..
T Consensus       157 ~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          157 QLDYESEPLNITVIK  171 (176)
T ss_dssp             TEEEECCCEEEEEEC
T ss_pred             CcceEecCEEEEEec
Confidence            433 33345555543

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=96.96  E-value=0.00048  Score=65.89  Aligned_cols=84  Identities=21%  Similarity=0.413  Sum_probs=56.0

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +....+.+|+.+.|.|.+.+.|.+.+.|.+++..+.....     ..+...      ..+.|.|.++...|.|.|.|.+.
T Consensus         9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-----~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~   77 (189)
T 2v5t_A            9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD-----NRFAML------ANNNLQILNINKSDEGIYRCEGR   77 (189)
T ss_dssp             CSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCC-----TTEEEC------TTSCEEETTCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccC-----CeEEEe------cCCCEEEeeCCHhHCcEEEEEEE
Confidence            3456788999999999999999999999998765532110     111111      12469999999999999999999


Q ss_pred             cCCCCcccceEEEEE
Q psy12044        341 NQAGSTSSNYTIRIV  355 (767)
Q Consensus       341 N~~G~s~~s~sL~V~  355 (767)
                      +..+.......+.+.
T Consensus        78 ~~~~~~~~~~~~~l~   92 (189)
T 2v5t_A           78 VEARGEIDFRDIIVI   92 (189)
T ss_dssp             ETTTTEEEEEEEEEE
T ss_pred             EcCCCceEEEEEEEE
Confidence            887654433333333

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=96.95  E-value=0.00085  Score=75.91  Aligned_cols=89  Identities=17%  Similarity=0.285  Sum_probs=67.4

Q ss_pred             ceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...+..|..+.|.|.+.+.|.|. +.|.+++..+.....     +.......+.....+.|.|.++..+|.|.|+|.|.|
T Consensus       322 ~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  396 (524)
T 2ec8_A          322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE-----DYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSN  396 (524)
T ss_dssp             EEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBC-----CEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCcc-----ceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEe
Confidence            45678899999999999999999 999998876654321     111111122233567899999999999999999999


Q ss_pred             CCCCcccceEEEEEe
Q psy12044        342 QAGSTSSNYTIRIVL  356 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~  356 (767)
                      ..|.....+.+.|..
T Consensus       397 ~~g~~~~~~~l~V~~  411 (524)
T 2ec8_A          397 SDVNAAIAFNVYVNT  411 (524)
T ss_dssp             SSCEEEEEEEEEECE
T ss_pred             cCceEEEEEEEEEec
Confidence            999977777776654

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=96.94  E-value=0.001  Score=58.58  Aligned_cols=92  Identities=21%  Similarity=0.335  Sum_probs=55.0

Q ss_pred             eeecccccccccccc-cccCCCc----EEEeecCeeccCCCcc------cccccceeecccCccee--eeEEEEeeeccC
Q psy12044        264 LEIQEGKNVSLLCKV-SAIPEAK----ITWLFDGVPIQNESMS------ASESHAVYSTEEGTEIK--KSELLIYNSNID  330 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a-~g~P~p~----itW~~~g~~l~~~s~~------~~~~~~~~~~~~g~~~~--~s~L~I~nvs~s  330 (767)
                      +.+..|+.++|.|.+ .+.+.+.    +.|.+++....-....      .....+..+........  ...|.|.++..+
T Consensus        10 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~   89 (118)
T 3udw_C           10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVE   89 (118)
T ss_dssp             EEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGG
T ss_pred             EEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChH
Confidence            677899999999998 4444444    9999864211000000      00011122222111111  568999999999


Q ss_pred             CCCceeEeecc-CCCCcccceEEEEE
Q psy12044        331 DNGTFVCVAEN-QAGSTSSNYTIRIV  355 (767)
Q Consensus       331 D~GtY~CvA~N-~~G~s~~s~sL~V~  355 (767)
                      |.|.|.|.+.+ ..|.....+.|.|.
T Consensus        90 D~G~Y~C~v~~~~~~~~~~~~~L~V~  115 (118)
T 3udw_C           90 DEGNYTCLFVTFPQGSRSVDIWLRVL  115 (118)
T ss_dssp             GCEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             HCeEEEEEEEECCCCCccceEEEEEE
Confidence            99999999988 55555555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.94  E-value=0.00011  Score=71.56  Aligned_cols=38  Identities=26%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCC-CCc
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCR-ISV   89 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~-L~~   89 (767)
                      .|+.|||+++.|+...-..+.  ++++|+.|+|++|. |+.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD  100 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIED  100 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCH
T ss_pred             eEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCH
Confidence            455666666655544333333  35566666666653 443

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=96.93  E-value=0.00042  Score=67.50  Aligned_cols=95  Identities=15%  Similarity=0.330  Sum_probs=60.0

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|.+++..+...........  .............|.|.++...|.|.|.|.+
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~   84 (212)
T 1f97_A            7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQIT--APYADRVTFSSSGITFSSVTRKDNGEYTCMV   84 (212)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEEC--GGGTTTEEEETTEEEESCCCGGGCEEEEEEE
T ss_pred             cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCccc--ccccCcEEeeceeEEEcccCcccCeEEEEEE
Confidence            34456788999999999999999999999996644211100000000  0000011112267999999999999999999


Q ss_pred             ccCCCCcccceEEEEEe
Q psy12044        340 ENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~~  356 (767)
                      .+..|.......+.+.+
T Consensus        85 ~~~~g~~~~~~~~~l~V  101 (212)
T 1f97_A           85 SEEGGQNYGEVSIHLTV  101 (212)
T ss_dssp             EETTSSSEEEEEEEEEE
T ss_pred             EccCCCcccEEEEEEEE
Confidence            99877433333333333

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=96.92  E-value=0.0017  Score=58.74  Aligned_cols=94  Identities=16%  Similarity=0.253  Sum_probs=55.8

Q ss_pred             cceeecccccccccccccccCC---CcEEEeecCeecc-------CCC----cccccccceeecccCcceeeeEEEEeee
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPE---AKITWLFDGVPIQ-------NES----MSASESHAVYSTEEGTEIKKSELLIYNS  327 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~---p~itW~~~g~~l~-------~~s----~~~~~~~~~~~~~~g~~~~~s~L~I~nv  327 (767)
                      ..+++..|+.++|.|...+.+.   ..+.|.+......       ...    .......++.+..........+|.|.++
T Consensus         8 ~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v   87 (123)
T 4gjt_B            8 DVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNA   87 (123)
T ss_dssp             SEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESC
T ss_pred             CEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCC
Confidence            3567889999999999876554   3578987321110       000    0000011122222233334567999999


Q ss_pred             ccCCCCceeEeecc-CCCCcccceEEEEE
Q psy12044        328 NIDDNGTFVCVAEN-QAGSTSSNYTIRIV  355 (767)
Q Consensus       328 s~sD~GtY~CvA~N-~~G~s~~s~sL~V~  355 (767)
                      ..+|.|.|.|.+.+ +.|.....+.|.|.
T Consensus        88 ~~~DsG~Y~C~v~t~~~g~~~~~~~L~Vl  116 (123)
T 4gjt_B           88 VQADEGEYECRVSTFPAGSFQARLRLRVL  116 (123)
T ss_dssp             CSSSCSEEEEEEEESSSCEEEEEEEEEC-
T ss_pred             ChHHCEEEEEEEEECCCCeEEeEEEEEEE
Confidence            99999999998755 45655555555443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=96.91  E-value=0.00031  Score=74.04  Aligned_cols=77  Identities=25%  Similarity=0.349  Sum_probs=61.1

Q ss_pred             eeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEe-eeccCCCCceeEeecc
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY-NSNIDDNGTFVCVAEN  341 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~-nvs~sD~GtY~CvA~N  341 (767)
                      ..+..|..+.|.|.+.+.|.+. +.|.+++..+....                ....+.|.|. ++...|.|.|.|.|.|
T Consensus       242 ~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~----------------~~~~~~L~i~~~v~~~d~G~Y~C~a~N  305 (331)
T 3u83_A          242 NWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV----------------EAQNRTLFFKGPINYSLAGTYICEATN  305 (331)
T ss_dssp             CCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE----------------EEETTEEEECSCCCGGGCEEEEEEEEE
T ss_pred             ceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc----------------eecCcEEEEeCCCccccCeEEEEEEEe
Confidence            3467899999999999999998 99999876653221                1123578999 8999999999999999


Q ss_pred             CCCCcccceEEEEEe
Q psy12044        342 QAGSTSSNYTIRIVL  356 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~  356 (767)
                      ..|.....+.+.|..
T Consensus       306 ~~G~~~~~~~l~V~~  320 (331)
T 3u83_A          306 PIGTRSGQVEVNITE  320 (331)
T ss_dssp             TTEEEEEEEEECCBC
T ss_pred             ccccceEEEEEEEec
Confidence            999887766666554

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.91  E-value=0.002  Score=57.80  Aligned_cols=90  Identities=12%  Similarity=0.231  Sum_probs=58.5

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcc---cccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMS---ASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~---~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      ......++.+|+.+.|.|.+.+  .+.+.|++++..+......   .+....+.....+   ....|.|.++..+|.|.|
T Consensus        13 ~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g---~~~~L~I~~v~~~D~G~Y   87 (112)
T 2e6q_A           13 AGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKG---LQHRLILHAVKHQDSGAL   87 (112)
T ss_dssp             ECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBT---TEEEEEEESCCSTTCSEE
T ss_pred             cCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCC---cEEEEEECCCCHHHCccE
Confidence            3445678899999999999997  7889999999888654310   0011112222222   245799999999999999


Q ss_pred             eEeeccCCCCcccceEEEEEe
Q psy12044        336 VCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       336 ~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      +|...+   ....+..|.|..
T Consensus        88 ~~~~~~---~~~ssA~L~V~~  105 (112)
T 2e6q_A           88 VGFSCP---GVQDSAALTIQE  105 (112)
T ss_dssp             EEEEET---TEEEEEEEEEEC
T ss_pred             EEEEEC---CeeEEEEEEEeC
Confidence            774432   223445555543

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=96.90  E-value=0.00058  Score=66.61  Aligned_cols=70  Identities=27%  Similarity=0.433  Sum_probs=54.6

Q ss_pred             ecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCC
Q psy12044        266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS  345 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~  345 (767)
                      +..|..+.|.|.+.+.| +.+.|.+++..+.....       +....     ....|.|.++...|.|.|+|.+.|..|.
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~-------~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  188 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTER-------MTLSQ-----NNSILRIDPIKREDAGEYQCEISNPVSV  188 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSS-------EEEET-----TTTEEEESSCCGGGCEEEEEEEECTTCC
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCC-------eEEcC-----CCCEEEEeccCHHhCeEEEEEEecCCCc
Confidence            67899999999999976 89999998877643221       11111     1257999999999999999999999998


Q ss_pred             ccc
Q psy12044        346 TSS  348 (767)
Q Consensus       346 s~~  348 (767)
                      ..+
T Consensus       189 ~~s  191 (208)
T 3r4d_A          189 RRS  191 (208)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            665

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=96.89  E-value=0.00057  Score=78.61  Aligned_cols=83  Identities=18%  Similarity=0.323  Sum_probs=62.4

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+.....      .+....   ......|.|.++...|.|.|.|.|.|.
T Consensus       486 ~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~------~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~N~  556 (570)
T 3b43_A          486 DISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESD------NIWISY---SENIATLQFSRAEPANAGKYTCQIKNE  556 (570)
T ss_dssp             CBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTT------TEEECC---CSSEEEEEESSCCTTCCEEEEEEEECS
T ss_pred             CceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCC------eEEEEE---CCCEEEEEECcCCHHHCEEEEEEEEEC
Confidence            45567899999999999999999999998754422111      011111   112468999999999999999999999


Q ss_pred             CCCcccceEEEE
Q psy12044        343 AGSTSSNYTIRI  354 (767)
Q Consensus       343 ~G~s~~s~sL~V  354 (767)
                      .|.....+.|.|
T Consensus       557 ~G~~~~~a~L~V  568 (570)
T 3b43_A          557 AGTQECFATLSV  568 (570)
T ss_dssp             SCEEEEEEEECC
T ss_pred             CcEEEEEEEEEE
Confidence            999888776654

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=96.89  E-value=0.0012  Score=58.11  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=52.2

Q ss_pred             cceeecccccccccccccccCCCcEEEeecC--e---ecc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      ..+.+.+|+.++|.|.+.+.+.+.+.|++..  .   .+. ........ ...+....   ......|.|.++..+|.|.
T Consensus         9 ~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~DsG~   85 (108)
T 1jhl_L            9 SYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG---SGTDFTLTISSLEPEDFAM   85 (108)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---SSSEEEEEECSCCTTCCSE
T ss_pred             CeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe---cCCEEEEEECCCCHHHCEE
Confidence            3567889999999999999988999998843  1   111 10000000 11111111   1234689999999999999


Q ss_pred             eeEeeccCC
Q psy12044        335 FVCVAENQA  343 (767)
Q Consensus       335 Y~CvA~N~~  343 (767)
                      |.|.+.|..
T Consensus        86 Y~C~~~n~~   94 (108)
T 1jhl_L           86 YICQQHNEY   94 (108)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEccCC
Confidence            999998863

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=96.89  E-value=0.00094  Score=65.95  Aligned_cols=71  Identities=21%  Similarity=0.476  Sum_probs=55.4

Q ss_pred             ceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...+.+|+.+.|.|.+.+.+.+. +.|++++..+....                    ..|.|.++..+|.|.|.|.+.|
T Consensus        16 ~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~--------------------~~L~i~~v~~~D~G~Y~C~a~n   75 (204)
T 3sgj_C           16 WYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------------SSYFIDAATVDDSGEYRCQTQL   75 (204)
T ss_dssp             CSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS--------------------SEEEESSCCGGGCEEEEEEETT
T ss_pred             CeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc--------------------cEEEEecccccCCEEEEEEeCC
Confidence            35678999999999999998876 99999887654321                    5799999999999999999998


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      ..  ....+.+.|.
T Consensus        76 ~~--~s~~~~l~V~   87 (204)
T 3sgj_C           76 ST--LSDPVQLEVH   87 (204)
T ss_dssp             SB--CCCCEEEEEE
T ss_pred             Cc--ccccEEEEEe
Confidence            43  3334555554

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=96.89  E-value=0.00075  Score=73.26  Aligned_cols=80  Identities=26%  Similarity=0.412  Sum_probs=61.2

Q ss_pred             ceeecccccccccccccccCCCcEEEeec-CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFD-GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~-g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...+.+|+.+.|.|.+.+.|.|.+.|.++ +..+.....         .     ....+.|.|.++..+|.|.|.|.|.|
T Consensus       214 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~---------~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N  279 (384)
T 3kld_A          214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR---------R-----HKSNGILEIPNFQQEDAGSYECVAEN  279 (384)
T ss_dssp             EEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCE---------E-----CTTSCEEEECSCCGGGCEEEEEEEEE
T ss_pred             ceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccce---------e-----cCCCcEEEECCCChhhCEEEEEEEEc
Confidence            34567899999999999999999999984 333321110         0     01235799999999999999999999


Q ss_pred             CCCCcccceEEEEEe
Q psy12044        342 QAGSTSSNYTIRIVL  356 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~  356 (767)
                      ..|.......+.|..
T Consensus       280 ~~G~~~~~~~l~v~~  294 (384)
T 3kld_A          280 SRGKNVAKGQLTFYA  294 (384)
T ss_dssp             TTEEEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEec
Confidence            999887777776654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=96.89  E-value=0.0011  Score=77.12  Aligned_cols=73  Identities=25%  Similarity=0.503  Sum_probs=62.4

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|+.+.|.|.+.+.|.+.+.|.+++..+..                     ...|.|.++...|.|.|.|.|.|.
T Consensus       568 ~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~---------------------~~~L~i~~~~~~d~G~Y~C~a~N~  626 (642)
T 1e07_A          568 DSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH---------------------TQVLFIAKITPNNNGTYACFVSNL  626 (642)
T ss_pred             ceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc---------------------CceEEECcccccCCeEEEEEEEec
Confidence            45677899999999999999999999998876532                     136899999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|....++.+.|.+
T Consensus       627 ~G~~~~s~~l~V~v  640 (642)
T 1e07_A          627 ATGRNNSIVKSITV  640 (642)
T ss_pred             ccCcceeEEEEEEE
Confidence            99998888777665

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=96.89  E-value=0.00099  Score=70.23  Aligned_cols=85  Identities=24%  Similarity=0.491  Sum_probs=64.3

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|+.+.|.|.+.+.|.+.+.|.+++..+........    .     ........|.|.++...|.|.|.|.+.|..
T Consensus       133 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~----~-----~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  203 (334)
T 1ry7_B          133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG----I-----KLRHQQWSLVMESVVPSDRGNYTCVVENKF  203 (334)
T ss_dssp             EEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTC----C-----CCCTTTTEEEECSCCGGGCCCEEEEEEETT
T ss_pred             EEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccc----e-----ecccceEEEEECCCCcccCEEEEEEEEeCC
Confidence            4677899999999999999999999998876644322100    0     011123579999999999999999999999


Q ss_pred             CCcccceEEEEEee
Q psy12044        344 GSTSSNYTIRIVLK  357 (767)
Q Consensus       344 G~s~~s~sL~V~~~  357 (767)
                      |.....+.+.|...
T Consensus       204 g~~~~~~~l~V~~~  217 (334)
T 1ry7_B          204 GSIRQTYTLDVLER  217 (334)
T ss_dssp             EEEEEEEEEEEECC
T ss_pred             CCEEEEEEEEEecC
Confidence            88777777776653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=96.88  E-value=0.00045  Score=68.34  Aligned_cols=75  Identities=20%  Similarity=0.295  Sum_probs=55.5

Q ss_pred             eeeccccccccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+.+|+.+.|.|.+.+. |.+.+.|.+++..+...                  .....|.|.++..+|.|.|+|.|.|.
T Consensus        98 ~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~------------------~~~~~L~i~~v~~~D~G~Y~C~a~n~  159 (204)
T 3sgj_C           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF------------------HHNSDFYIPKATLKDSGSYFCRGLVG  159 (204)
T ss_dssp             SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE------------------EECCCEEESSCCGGGCEEEEEEEEET
T ss_pred             eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc------------------cCCceEEECcCCcccCEEEEEEEEeC
Confidence            456789999999999665 66899999988764211                  12357999999999999999999994


Q ss_pred             -CCCcccceEEEEEe
Q psy12044        343 -AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 -~G~s~~s~sL~V~~  356 (767)
                       .+.....+.+.|..
T Consensus       160 ~~~~~s~~~~l~V~~  174 (204)
T 3sgj_C          160 SKNVSSETVQITITQ  174 (204)
T ss_dssp             TEEEECCCEEEEEEC
T ss_pred             CCceecCcEEEEEeC
Confidence             44444455555543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=96.87  E-value=0.00095  Score=67.97  Aligned_cols=94  Identities=14%  Similarity=0.303  Sum_probs=62.1

Q ss_pred             ceeecccccccccccc---cccCCCcEEEeec-CeeccCCCcc-------------ccccc-ceeecccCcceeeeEEEE
Q psy12044        263 YLEIQEGKNVSLLCKV---SAIPEAKITWLFD-GVPIQNESMS-------------ASESH-AVYSTEEGTEIKKSELLI  324 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a---~g~P~p~itW~~~-g~~l~~~s~~-------------~~~~~-~~~~~~~g~~~~~s~L~I  324 (767)
                      ...+..|..+.|.|.+   .+.|.+.+.|.++ +.........             ..... .... ........+.|.|
T Consensus       127 ~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~L~i  205 (268)
T 3mj6_A          127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL-TGDISRNDGSIKL  205 (268)
T ss_dssp             EEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEE-CSCGGGTBCCEEE
T ss_pred             ccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEe-eccCCCCeEEEEE
Confidence            5677899999999999   6779999999984 3211111000             00000 0000 1111234568999


Q ss_pred             eeeccCCCCceeEeeccCCCCcccceEEEEEee
Q psy12044        325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       325 ~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      .++..+|.|.|+|.|.|..|.....+.+.|...
T Consensus       206 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  238 (268)
T 3mj6_A          206 QTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD  238 (268)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence            999999999999999998888777777776543

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=96.87  E-value=0.0028  Score=56.07  Aligned_cols=94  Identities=19%  Similarity=0.189  Sum_probs=56.1

Q ss_pred             cceeecccccccccccccc-cCCCcEEEeecCee--------ccCC-C-cccccccceeecccCcceeeeEEEEeeeccC
Q psy12044        262 FYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVP--------IQNE-S-MSASESHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~--------l~~~-s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      ..+.+.+|+.++|.|.... .....+.|.+....        +... . ........+.+. .........|.|.++..+
T Consensus         5 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~sL~I~~v~~~   83 (116)
T 2or8_A            5 VEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLK-GHISEGDVSLTIENSVES   83 (116)
T ss_dssp             EEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECC-SCGGGTBCCEEESSCCGG
T ss_pred             ceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEe-cCCCCCeEEEEECCCCcc
Confidence            3567889999999999865 34567999985411        0000 0 000001111111 112233467999999999


Q ss_pred             CCCceeEeeccCCCCcccceEEEEEe
Q psy12044        331 DNGTFVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       331 D~GtY~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      |.|.|.|.+.+..+.......+.+.+
T Consensus        84 DsG~Y~C~v~~~~~~~~~~~~~~l~V  109 (116)
T 2or8_A           84 DSGLYCCRVEIPGWFNDQKVTFSLQV  109 (116)
T ss_dssp             GCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred             cCEEEEEEEEcCCcccccEEEEEEEE
Confidence            99999999998765442244444444

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=96.86  E-value=0.00062  Score=64.28  Aligned_cols=64  Identities=23%  Similarity=0.378  Sum_probs=50.9

Q ss_pred             eeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+.+|..+.|.|.+ .+.|.+.+.|.+++..+...                  .....|.|.++...|.|.|.|.+.|.
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~  156 (170)
T 3ry4_A           95 LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS------------------HLDPTFSIPQANHSHSGDYHCTGNIG  156 (170)
T ss_dssp             SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE------------------SSCCEEEESSCCGGGCEEEEEEEEET
T ss_pred             ceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc------------------CCCCeEEEEeccccCCEEEEEEEEeC
Confidence            356789999999999 45677999999988765311                  11346899999999999999999998


Q ss_pred             CCC
Q psy12044        343 AGS  345 (767)
Q Consensus       343 ~G~  345 (767)
                      .|.
T Consensus       157 ~g~  159 (170)
T 3ry4_A          157 YTL  159 (170)
T ss_dssp             TEE
T ss_pred             cCc
Confidence            875

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=96.86  E-value=0.00017  Score=85.62  Aligned_cols=87  Identities=20%  Similarity=0.276  Sum_probs=0.0

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+..|+.+.|.|.+.+.|.|.+.|++++..+......       ..     ....+.|.|.++..+|.|.|.|.|.|
T Consensus       674 ~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~-------~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N  741 (772)
T 3v2a_R          674 ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI-------VL-----KDGNRNLTIRRVRKEDEGLYTCQACS  741 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCe-------EE-----cCCCcEEEECcCCHHHCEEEEEEEEe
Confidence            3456778999999999999999999999988766543211       00     11246799999999999999999999


Q ss_pred             CCCCcccceEEEEEeeccc
Q psy12044        342 QAGSTSSNYTIRIVLKEEN  360 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~~~~p  360 (767)
                      ..|.....+.+.|...+..
T Consensus       742 ~~G~~~~~~~l~V~~~p~~  760 (772)
T 3v2a_R          742 VLGCAKVEAFFIIEGAQEK  760 (772)
T ss_dssp             -------------------
T ss_pred             CCcceeEEEEEEEECCCCc
Confidence            9999999888887765443

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=96.85  E-value=0.00063  Score=72.06  Aligned_cols=97  Identities=18%  Similarity=0.275  Sum_probs=66.5

Q ss_pred             CCCCccceeecccccccccccc---cccC-CCcEEEeecCeeccCCCccc--ccccceeecccCcceeeeEEEEeeeccC
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKV---SAIP-EAKITWLFDGVPIQNESMSA--SESHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a---~g~P-~p~itW~~~g~~l~~~s~~~--~~~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      +........+..|..+.|.|.+   .+.| .+.+.|.+++..+.......  ...........+.....+.|.|.++..+
T Consensus       229 i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~  308 (339)
T 3o4o_C          229 IISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRE  308 (339)
T ss_dssp             ECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCC
T ss_pred             EecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechh
Confidence            3333445567889999999999   8999 88999998887654321110  0011122223333334557999999999


Q ss_pred             CC-CceeEeeccCCCCcccceEEE
Q psy12044        331 DN-GTFVCVAENQAGSTSSNYTIR  353 (767)
Q Consensus       331 D~-GtY~CvA~N~~G~s~~s~sL~  353 (767)
                      |. |.|.|.|.|..|.......+.
T Consensus       309 d~~G~Y~C~a~N~~G~~~~~~~~~  332 (339)
T 3o4o_C          309 DLHMDFKCVVHNTLSFQTLRTTVK  332 (339)
T ss_dssp             SCCCCCEEEEEETTEEECCBCCCC
T ss_pred             hcCccEEEEEEeccCceEEEEEhh
Confidence            97 999999999999887765443

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=96.83  E-value=0.00089  Score=74.25  Aligned_cols=82  Identities=17%  Similarity=0.294  Sum_probs=57.6

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+.+|+.+.|.|.+.+.|.|.++|.+++..+.........              ...+........|.|.|+|.|.|.
T Consensus       335 ~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~--------------~~~~~~~~~~~~D~G~YtC~A~N~  400 (423)
T 3qs7_E          335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN--------------GYSISKFCNHKHQPGEYIFHAEND  400 (423)
T ss_dssp             EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSS--------------SSEEEEECCCTTCCSCEEEEEEET
T ss_pred             cEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccC--------------CcEEEEEecccccCEEEEEEEEcC
Confidence            456778999999999999999999999999887543311000              001222445568999999999999


Q ss_pred             CCCcccceEEEEEeec
Q psy12044        343 AGSTSSNYTIRIVLKE  358 (767)
Q Consensus       343 ~G~s~~s~sL~V~~~~  358 (767)
                      .|.....+.|.|..++
T Consensus       401 ~G~~~~s~~L~v~~~p  416 (423)
T 3qs7_E          401 DAQFTKMFTLNIRSGT  416 (423)
T ss_dssp             TEEEEEEEEEC-----
T ss_pred             CceEEEEEEEEEecCC
Confidence            9998888777766543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=96.83  E-value=0.0014  Score=65.07  Aligned_cols=72  Identities=17%  Similarity=0.243  Sum_probs=54.1

Q ss_pred             cceeecccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ...++.+|..+.|.|.+.. .|.|.+.|++++..+......     .+.+.   .......|.|.++..+|.|.|+|.+.
T Consensus        10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~-----~~~~~---~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A           10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKY-----KMHID---RNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSC-----EEEEC---TTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCE-----EEEEe---CCCCEEEEEECCCChhhCEEEEEEEE
Confidence            3567889999999999864 799999999999887543211     11111   11133579999999999999999999


Q ss_pred             c
Q psy12044        341 N  341 (767)
Q Consensus       341 N  341 (767)
                      |
T Consensus        82 N   82 (207)
T 3rbs_A           82 D   82 (207)
T ss_dssp             E
T ss_pred             C
Confidence            8

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=96.83  E-value=0.0011  Score=71.69  Aligned_cols=81  Identities=25%  Similarity=0.457  Sum_probs=63.6

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.+.+.|.+++..+......        .     ....+.|.|.++...|.|.|.|.+.|.
T Consensus       231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~--------~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~  297 (404)
T 3p3y_A          231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAK--------F-----ENFNKALRITNVSEEDSGEYFCLASNK  297 (404)
T ss_dssp             EEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEE--------E-----EGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred             CceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCccc--------c-----cccCceEEEccCCHhHCEEEEEEEEeC
Confidence            355778999999999999999999999988766432211        0     112357999999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus       298 ~g~~~~~~~l~V~~  311 (404)
T 3p3y_A          298 MGSIRHTISVRVKA  311 (404)
T ss_dssp             SCEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEeC
Confidence            99877777666654

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=96.82  E-value=0.00062  Score=65.78  Aligned_cols=69  Identities=13%  Similarity=0.042  Sum_probs=53.1

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+.+|+.++|.|.+.+ +.+.+.|++++...                    ......|.|.++...|.|.|.|.+.|..|
T Consensus        18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------------------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   76 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------------------YQDQAVLFIPAMKRSLAGRYRCSYQNGSL   76 (184)
T ss_dssp             EEETTCCEEEEEECST-TCSEEEEEETTTCC--------------------EESSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------------------cCcccEEEECcCChhhCceEEEEEEcCCC
Confidence            6789999999999988 78899999976540                    11235799999999999999999999876


Q ss_pred             Ccc--cceEEEE
Q psy12044        345 STS--SNYTIRI  354 (767)
Q Consensus       345 ~s~--~s~sL~V  354 (767)
                      ...  ..+.+.|
T Consensus        77 ~~~~s~~~~l~V   88 (184)
T 2gi7_A           77 WSLPSDQLELVA   88 (184)
T ss_dssp             EBCCCCCEEEEE
T ss_pred             ccCCCCCEEEEe
Confidence            433  3344444

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=96.82  E-value=0.00086  Score=64.38  Aligned_cols=76  Identities=29%  Similarity=0.517  Sum_probs=55.5

Q ss_pred             ccceeecccccccccccccccC-CCcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP-EAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      +....+.+|+.+.|.|.+.+.+ .+.+.|.+ ++..+.....      .+....  .......|.|.++...|.|.|.|.
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~------~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~   80 (191)
T 1epf_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQ------RISVVW--NDDDSSTLTIYNANIDDAGIYKCV   80 (191)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSS------SEEEEE--EETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCC------eEEEEE--CCCCceEEEEccCCcccCEEEEEE
Confidence            3456778999999999999987 88999999 7665542111      011111  012346899999999999999999


Q ss_pred             eccCCC
Q psy12044        339 AENQAG  344 (767)
Q Consensus       339 A~N~~G  344 (767)
                      +.+..|
T Consensus        81 ~~~~~~   86 (191)
T 1epf_A           81 VTAEDG   86 (191)
T ss_dssp             EEETTT
T ss_pred             EEcCCC
Confidence            999874

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=96.81  E-value=0.00063  Score=78.67  Aligned_cols=84  Identities=20%  Similarity=0.322  Sum_probs=66.3

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      .....+..|+.+.+.|.+.+.|.|.++|.++++.+......       ....   ......|.|.++...|.|.|+|.|.
T Consensus       489 ~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~-------~i~~---~~~~~~L~I~~~~~~D~G~Yt~~A~  558 (573)
T 3uto_A          489 PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKY-------MKRY---NGNDYGLTINRVKGDDKGEYTVRAK  558 (573)
T ss_dssp             CCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSE-------EEEE---ETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcE-------EEEE---cCCEEEEEEcCCCcccCcEEEEEEE
Confidence            34567889999999999999999999999998877543221       1111   1234579999999999999999999


Q ss_pred             cCCCCcccceEEEE
Q psy12044        341 NQAGSTSSNYTIRI  354 (767)
Q Consensus       341 N~~G~s~~s~sL~V  354 (767)
                      |..|...+.+.+.|
T Consensus       559 N~~G~~~~~v~l~V  572 (573)
T 3uto_A          559 NSYGTKEEIVFLNV  572 (573)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEE
Confidence            99999888777765

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=96.80  E-value=0.0011  Score=63.25  Aligned_cols=73  Identities=23%  Similarity=0.448  Sum_probs=54.3

Q ss_pred             ccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      +....+.+|+.+.|.|.+.+.+.+ .+.|.+++..+..                    ....|.|.++...|.|.|.|.+
T Consensus        11 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--------------------~~~~L~i~~v~~~d~G~Y~C~~   70 (176)
T 1f2q_A           11 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------------------TNSSLNIVNAKFEDSGEYKCQH   70 (176)
T ss_dssp             SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC--------------------CSSEEEECSCCGGGCEEEEEEC
T ss_pred             CCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC--------------------CceEEEEeccceecCEEEEEEc
Confidence            334578899999999999998885 6999998866532                    1357999999999999999999


Q ss_pred             ccCCCCcccceEEEEE
Q psy12044        340 ENQAGSTSSNYTIRIV  355 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~  355 (767)
                      .|..+..  .+.+.|.
T Consensus        71 ~~~~~s~--~~~l~V~   84 (176)
T 1f2q_A           71 QQVNESE--PVYLEVF   84 (176)
T ss_dssp             TTSSCCC--CEEEEEE
T ss_pred             CCccccc--cEEEEEe
Confidence            9866543  4444444

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=96.80  E-value=0.00082  Score=65.45  Aligned_cols=79  Identities=15%  Similarity=0.257  Sum_probs=56.3

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+.+|+.++|.|.+.+.+. .+.|++++..+......           .........|.|.++...|.|.|.|.+.|..|
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~-----------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQN-----------PLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG   82 (196)
T ss_dssp             EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEEC-----------CCSSTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccccc-----------ccCCccccEEEeccCChhHCeEEEEEEeCCCC
Confidence            6778999999999988776 99999987655321100           00112346799999999999999999998876


Q ss_pred             Ccc--cceEEEEE
Q psy12044        345 STS--SNYTIRIV  355 (767)
Q Consensus       345 ~s~--~s~sL~V~  355 (767)
                      ...  ..+.+.|.
T Consensus        83 ~~~~s~~~~l~V~   95 (196)
T 2d3v_A           83 WSEPSDPLELVVT   95 (196)
T ss_dssp             ECBCCCCEEEEEE
T ss_pred             cCCcCccEEEEec
Confidence            443  33444444

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=96.79  E-value=0.00077  Score=66.65  Aligned_cols=65  Identities=18%  Similarity=0.436  Sum_probs=50.5

Q ss_pred             ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeee-ccCCCCceeEeeccCCCC
Q psy12044        268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS-NIDDNGTFVCVAENQAGS  345 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nv-s~sD~GtY~CvA~N~~G~  345 (767)
                      +|..++|.|.  +.|.+.+.|.+++..+......    ...       ....+.|.|.++ ...|.|.|+|.|.|..|.
T Consensus       127 ~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~----~~~-------~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          127 SGTTVILTCP--QYPGSEILWQHNDKNIGGDEDD----KNI-------GSDEDHLSLKEFSELEQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             ETTEEEEECS--CCCSSCEEEEETTEEESCCTTC----TTE-------EEETTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             cCCcEEEEcC--CCCCCceEEEECCEECCCccCC----ceE-------ecCCCEEEEeeCCccccCEEEEEEeccCCCC
Confidence            8999999999  7888999999998776432110    000       112467999999 999999999999999985

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=96.78  E-value=0.00098  Score=64.68  Aligned_cols=66  Identities=20%  Similarity=0.465  Sum_probs=51.7

Q ss_pred             ecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEee-eccCCCCceeEeeccCCC
Q psy12044        266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN-SNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~n-vs~sD~GtY~CvA~N~~G  344 (767)
                      ...|+.+.|.|.+.+ + +.+.|.+++..+...                   ....|.|.+ +..+|.|.|.|.|.|..|
T Consensus        11 ~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~-------------------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g   69 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-D-ENLKWEKNGQELPQK-------------------HDKHLVLQDFSEVEDSGYYVCYTPASNK   69 (186)
T ss_dssp             EEETTEEEEECSSCC-C-TTCEEEETTEEECSC-------------------CCSEEEEESCCTTTSCEEEEEECSSCCC
T ss_pred             EeCCcEEEEEEeCCC-C-CceEEEECCEECCCC-------------------CCCEEEECCCCccccCEEEEEEEEeCCC
Confidence            467999999999988 4 359999998776432                   123699999 999999999999999988


Q ss_pred             CcccceEE
Q psy12044        345 STSSNYTI  352 (767)
Q Consensus       345 ~s~~s~sL  352 (767)
                      .....+.+
T Consensus        70 ~~~~~~~~   77 (186)
T 1jbj_A           70 NTYLYLKA   77 (186)
T ss_dssp             CCCEEECC
T ss_pred             cEEEEEEE
Confidence            74443333

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=96.78  E-value=0.00059  Score=65.73  Aligned_cols=61  Identities=15%  Similarity=0.162  Sum_probs=47.6

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      +..+.|.|.+.+.|.|.+.|.+++..+....                     .+.+.++...|.|.|.|.|.|..|...+
T Consensus       110 ~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~---------------------~~~i~~~~~~d~G~Y~C~a~N~~g~~~~  168 (176)
T 1hng_A          110 CSNATLTCEVLEGTDVELKLYQGKEHLRSLR---------------------QKTMSYQWTNLRAPFKCKAVNRVSQESE  168 (176)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEETTEEEEEES---------------------SSEEEEECSCCSSCEEEEEEETTEEEEE
T ss_pred             CCcEEEEEEecCCCCcEEEEEECCEECCCCC---------------------cEEEEEEEccCCeEEEEEEEecCCCcee
Confidence            3458999999999999999999887664221                     1344577899999999999999987655


Q ss_pred             ce
Q psy12044        349 NY  350 (767)
Q Consensus       349 s~  350 (767)
                      ..
T Consensus       169 ~~  170 (176)
T 1hng_A          169 ME  170 (176)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=96.78  E-value=0.00098  Score=63.62  Aligned_cols=72  Identities=19%  Similarity=0.415  Sum_probs=55.7

Q ss_pred             cceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ....+.+|+.+.|.|.+.+.+.+. +.|.+++..+..                    ..+.|.|.++..+|.|.|.|.+.
T Consensus        15 ~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~--------------------~~~~L~i~~~~~~d~G~Y~C~~~   74 (175)
T 1fnl_A           15 QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------------------QASSYFIDAATVNDSGEYRCQTN   74 (175)
T ss_dssp             CCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------------------SCSEEEESSCCGGGCEEEEEECS
T ss_pred             CceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC--------------------CceEEEEeCCCcccCEEEEEEee
Confidence            345678999999999999988776 789998866542                    13479999999999999999999


Q ss_pred             cCCCCcccceEEEEE
Q psy12044        341 NQAGSTSSNYTIRIV  355 (767)
Q Consensus       341 N~~G~s~~s~sL~V~  355 (767)
                      |..+  ...+.+.|.
T Consensus        75 n~~~--s~~~~l~V~   87 (175)
T 1fnl_A           75 LSTL--SDPVQLEVH   87 (175)
T ss_dssp             SSCC--CCCEEEEEE
T ss_pred             CCcc--cccEEEEEe
Confidence            8554  334455544

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=96.77  E-value=0.0024  Score=62.56  Aligned_cols=90  Identities=11%  Similarity=0.276  Sum_probs=58.9

Q ss_pred             ceeecccccccccccccccCCCcEEEeec--Ceecc----CCCcccc-cccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQ----NESMSAS-ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~----~~s~~~~-~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      ...+.+|+.+.|.|.+.+.+.+.+.|++.  +....    ....... ....+....   ......|.|.++..+|.|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y   85 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN---SGNMATLTISKAQAGDEADY   85 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE---ETTEEEEEESSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe---cCCEEEEEECCCChhhCEEE
Confidence            67788999999999999999999999882  21110    0000000 001111111   22346799999999999999


Q ss_pred             eEeeccCCC---CcccceEEEEE
Q psy12044        336 VCVAENQAG---STSSNYTIRIV  355 (767)
Q Consensus       336 ~CvA~N~~G---~s~~s~sL~V~  355 (767)
                      .|.+.+..|   .......+.|.
T Consensus        86 ~C~~~~~~~~~~~~~~~~~l~V~  108 (213)
T 3mj8_L           86 YCQSWDGTNSAWVFGSGTKVTVL  108 (213)
T ss_dssp             EEEEEETTTTEEEEBCCEEEEEE
T ss_pred             EEEeccCCcceeEEcCceEEEEe
Confidence            999999887   33444555554

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=96.75  E-value=0.00076  Score=64.39  Aligned_cols=64  Identities=19%  Similarity=0.312  Sum_probs=50.7

Q ss_pred             eeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+.+|..+.|.|.+.+.+.+ .+.|.+++..+..                  ......|.|.++..+|.|.|.|.|.|.
T Consensus        98 ~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~------------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~  159 (175)
T 1fnl_A           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------------------FHHNSDFHIPKATLKDSGSYFCRGLVG  159 (175)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------------------EEECCCEEESSCCGGGCEEEEEEEEET
T ss_pred             ceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC------------------CCCCCEEEEcccChhhCeEEEEEEEcC
Confidence            456789999999999887654 9999998876521                  112357999999999999999999997


Q ss_pred             CCC
Q psy12044        343 AGS  345 (767)
Q Consensus       343 ~G~  345 (767)
                      .|.
T Consensus       160 ~~~  162 (175)
T 1fnl_A          160 SKN  162 (175)
T ss_dssp             TEE
T ss_pred             CCC
Confidence            553

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=96.74  E-value=0.00091  Score=68.34  Aligned_cols=70  Identities=20%  Similarity=0.311  Sum_probs=54.4

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+.+|+.+.|.|.+.+.|.|.+.|.+++..+..               .+        .+..+..+|.|.|.|.|.|.
T Consensus       194 ~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~---------------~g--------~~~~v~~~d~G~Y~C~a~N~  250 (265)
T 2oz4_A          194 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP---------------IG--------ESVTVTRDLEGTYLCRARST  250 (265)
T ss_dssp             EEEEETTCEECCCCCCEEESCCEEEEEETTTEECC---------------TT--------SCEECCGGGCEEEEEEEEET
T ss_pred             ccEEcCCCeEEEEeECccCCCCeEEEEECCcccCC---------------CC--------cEEEeehhhCeEEEEEEECC
Confidence            45678899999999999999999999998762111               01        11247789999999999999


Q ss_pred             CCCcccceEEEEE
Q psy12044        343 AGSTSSNYTIRIV  355 (767)
Q Consensus       343 ~G~s~~s~sL~V~  355 (767)
                      .|.....+.+.|.
T Consensus       251 ~G~~~~~~~l~V~  263 (265)
T 2oz4_A          251 QGEVTREVTVNVL  263 (265)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEe
Confidence            9988777766654

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=96.73  E-value=0.0015  Score=64.33  Aligned_cols=84  Identities=19%  Similarity=0.366  Sum_probs=56.4

Q ss_pred             eecccccccccccc-cccCCCcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        265 EIQEGKNVSLLCKV-SAIPEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       265 ~v~~G~~vsL~C~a-~g~P~p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      .+..|..+.|.|.+ .+.|.+.+.|.. ++..+.....       ..... ........|.+.++..+|.|.|+|.+.|.
T Consensus       121 ~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~-------~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~  192 (222)
T 4i0k_A          121 DLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT-------TSQMA-NERGLFDVHSVLRVVLGANGTYSCLVRNP  192 (222)
T ss_dssp             ---CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE-------EEEEE-CTTSCEEEEEEEEEECCTTCEEEEEEEET
T ss_pred             eecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc-------eeEEc-CCCCeEEEEEEEEEEeCCCCEEEEEEECC
Confidence            45679999999999 888999999988 3433321110       00000 01111235788999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus       193 ~g~~~~~~~l~V~~  206 (222)
T 4i0k_A          193 VLQQDAHGSVTITG  206 (222)
T ss_dssp             TTTEEEEEEEECCC
T ss_pred             CCCCceEEEEEEeC
Confidence            99887777666554

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=96.70  E-value=0.002  Score=68.21  Aligned_cols=88  Identities=17%  Similarity=0.219  Sum_probs=62.6

Q ss_pred             cceeecccccccccccccccC---CC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC-cee
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIP---EA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG-TFV  336 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P---~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G-tY~  336 (767)
                      ....+..|+.+.|.|.+.+.|   .+ .+.|.+++..+......   .. ......+. ...+.|.|.++..+|.| .|+
T Consensus       236 ~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~---~~-~~~~~~~~-~~~~~L~I~~v~~~D~G~~Y~  310 (329)
T 3oq3_B          236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFG---VY-SILTSSGG-ITEATLYFENVTEEYIGNTYT  310 (329)
T ss_dssp             SEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSS---EE-EEEEEETT-EEEEEEEESSCCGGGTTCEEE
T ss_pred             CeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCc---ee-eeecccCc-eeEeEEEEEeccHHHCCCcEE
Confidence            346778999999999999998   77 88999988764221110   00 00001111 35678999999999999 999


Q ss_pred             EeeccCCCCcccceEEEE
Q psy12044        337 CVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V  354 (767)
                      |.|.|..|.....+.+.|
T Consensus       311 C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          311 CRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEECSSCEEEEEEEEEE
T ss_pred             EEEEecCCceEEEEEEEe
Confidence            999999998776665543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=96.69  E-value=0.00084  Score=65.93  Aligned_cols=79  Identities=15%  Similarity=0.311  Sum_probs=55.9

Q ss_pred             eccccccccccccccc-CC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        266 IQEGKNVSLLCKVSAI-PE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~-P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      +..|..+.|.|.+.+. |. +.+.|.+++..+.......    .......+ ....+.|.|.++..+|.|.|+|.|.|..
T Consensus       125 ~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~----~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  199 (212)
T 1nfd_E          125 ELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT----KPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEG  199 (212)
T ss_dssp             HHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC----CCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTT
T ss_pred             hccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecC----CceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCC
Confidence            4568899999999987 44 7999999988775432110    00111122 3345679999999999999999999988


Q ss_pred             CCcccc
Q psy12044        344 GSTSSN  349 (767)
Q Consensus       344 G~s~~s  349 (767)
                      +.....
T Consensus       200 ~~~~~~  205 (212)
T 1nfd_E          200 ETVEKS  205 (212)
T ss_dssp             TTCCCC
T ss_pred             ceEEEE
Confidence            765443

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=96.68  E-value=0.0014  Score=68.01  Aligned_cols=85  Identities=21%  Similarity=0.233  Sum_probs=64.4

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEee-eccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYN-SNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~n-vs~sD~GtY~CvA~N  341 (767)
                      ...+..|..+.|.|.+.+.|.+.+.|.+++..+......       ....   ......|.|.+ +...|.|.|.|.|.|
T Consensus       113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~---~~~~~~l~i~~~~~~~d~G~Y~C~a~N  182 (305)
T 2nzi_A          113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHY-------QVIV---TRSFTSLVFPNGVERKDAGFYVVCAKN  182 (305)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSC-------EEEE---CSSEEEEEETTCCCSTTCEEEEEEEEE
T ss_pred             cEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcE-------EEEE---cCCceEEEEecCCccCccEEEEEEEEe
Confidence            345678999999999999999999999987766432211       1110   11245788998 999999999999999


Q ss_pred             CCCCcccceEEEEEee
Q psy12044        342 QAGSTSSNYTIRIVLK  357 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~~  357 (767)
                      ..|.....+.+.+...
T Consensus       183 ~~G~~~~~~~l~v~~~  198 (305)
T 2nzi_A          183 RFGIDQKTVELDVADV  198 (305)
T ss_dssp             TTEEEEEEEEEEEEBC
T ss_pred             CCCceeeEEEEEEecC
Confidence            9999887777776643

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=96.67  E-value=0.0023  Score=73.31  Aligned_cols=92  Identities=9%  Similarity=0.058  Sum_probs=63.0

Q ss_pred             cceeeccccccccccccc----ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        262 FYLEIQEGKNVSLLCKVS----AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~----g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      ....+..|+.+.|.|.+.    +.|.+.+.|.+++..+.........   ..+.........+.|.|.++..+|.|.|+|
T Consensus       450 ~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  526 (585)
T 2ocw_A          450 GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPS---KAFVNCDENSRLVSLTLNLVTRADEGWYWC  526 (585)
T ss_pred             CceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCC---cceEEecCcccEEEEEECCCCcccCeEEEE
Confidence            445678899999999886    6788899999988765432211000   001111112234689999999999999999


Q ss_pred             eeccCCCCcccc-eEEEEEe
Q psy12044        338 VAENQAGSTSSN-YTIRIVL  356 (767)
Q Consensus       338 vA~N~~G~s~~s-~sL~V~~  356 (767)
                      .|.|..|..... +.|.|..
T Consensus       527 ~a~N~~G~~~~~~~~l~V~~  546 (585)
T 2ocw_A          527 GVKQGHFYGETAAVYVAVEE  546 (585)
T ss_pred             EeEeCCCccEEEEEEEEEEe
Confidence            999999876653 5555554

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=96.66  E-value=0.0023  Score=62.21  Aligned_cols=73  Identities=12%  Similarity=0.147  Sum_probs=49.1

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+.+|+.+.|.|.+.+. .+.+.|.+++..+......        ............|.|.++..+|.|.|.|.|.|..
T Consensus       110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~--------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~  180 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLN--------SQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSN  180 (198)
T ss_dssp             SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEE--------C------CCEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccc--------ccccCCCcceeEEEecccCcccCeEEEEEEEeCC
Confidence            457789999999999988 7899999988665321110        0000001124689999999999999999999986


Q ss_pred             CC
Q psy12044        344 GS  345 (767)
Q Consensus       344 G~  345 (767)
                      +.
T Consensus       181 ~~  182 (198)
T 1ugn_A          181 SP  182 (198)
T ss_dssp             ST
T ss_pred             CC
Confidence            63

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=96.66  E-value=0.0016  Score=64.78  Aligned_cols=85  Identities=13%  Similarity=0.148  Sum_probs=52.1

Q ss_pred             ccceeecccccccccccccc-cCCCcEEEeecCe-eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        261 TFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGV-PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~-~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .....+..|..+.+.|.+.+ .|.|.++|.+++. .+......      ......+..   ..+.+.++..+|.|.|+|.
T Consensus       125 ~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~------~~~~~~g~~---~v~s~l~v~~~d~G~YtC~  195 (226)
T 4f80_A          125 HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAP------VVADGVGLY---AVAASVIMRGSSGEGVSCT  195 (226)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECC------CEECTTSCE---EEEEEEEECC----CEEEE
T ss_pred             cceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceE------EEECCCCcE---EEEEEEEechhcCcEEEEE
Confidence            33456778999999999988 5999999998543 33221110      111112211   1234456778899999999


Q ss_pred             eccCCCCcccceEEEE
Q psy12044        339 AENQAGSTSSNYTIRI  354 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V  354 (767)
                      |.|..|...+.+.+.|
T Consensus       196 a~N~~g~~~~~~~v~v  211 (226)
T 4f80_A          196 IRSSLLGLEKTASISI  211 (226)
T ss_dssp             EEETTTTEEEEEEECC
T ss_pred             EEeCCCCeEEEEEEEE
Confidence            9999998777665544

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=96.61  E-value=0.0027  Score=62.44  Aligned_cols=93  Identities=15%  Similarity=0.291  Sum_probs=58.6

Q ss_pred             cceeecccccccccccccccC-----CCcEEEeecCeeccCCCc--------ccccccceeecccCcceeeeEEEEeeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIP-----EAKITWLFDGVPIQNESM--------SASESHAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P-----~p~itW~~~g~~l~~~s~--------~~~~~~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      ..+.+..|+.+.|.|.+.+.|     .+.+.|.+++..+.....        .........+...+.......|.|.++.
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   88 (222)
T 3sbw_C            9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVK   88 (222)
T ss_dssp             SEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCC
T ss_pred             ccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcc
Confidence            345778899999999987776     348999987533211100        0000011112111112235689999999


Q ss_pred             cCCCCceeEeeccCCCCcccceEEEEE
Q psy12044        329 IDDNGTFVCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       329 ~sD~GtY~CvA~N~~G~s~~s~sL~V~  355 (767)
                      .+|.|.|.|.+.+ .|.....+.+.|.
T Consensus        89 ~~D~G~Y~C~~~~-~~~~~~~~~l~V~  114 (222)
T 3sbw_C           89 LQDAGVYRCMISY-GGADYKRITVKVN  114 (222)
T ss_dssp             GGGCEEEEEEEES-SSEEEEEEEEEEE
T ss_pred             cccCeEEEEEEEe-CCCceeEEEEEEE
Confidence            9999999999998 5555555555555

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=96.61  E-value=0.0015  Score=70.36  Aligned_cols=84  Identities=23%  Similarity=0.391  Sum_probs=63.2

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|+.+.|.|.+.+.|.+.+.|.+++..+......     .+....   ......|.|.++...|.|.|.|.|.|.
T Consensus       109 ~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~-----~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~N~  180 (389)
T 2jll_A          109 IYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT-----NLKTYS---TGRKMILEIAPTSDNDFGRYNCTATNH  180 (389)
T ss_dssp             EEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCT-----TEEEEE---CSSCEEEEECCCSTTSSEEEEEEEEET
T ss_pred             eEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCc-----eEEEec---cCCEEEEEECCCChhhCEEEEEEEEcC
Confidence            345678999999999999999999999998776543211     111111   112457999999999999999999999


Q ss_pred             CCCcccceEEEE
Q psy12044        343 AGSTSSNYTIRI  354 (767)
Q Consensus       343 ~G~s~~s~sL~V  354 (767)
                      .|.....+.+.+
T Consensus       181 ~G~~~~~~~l~v  192 (389)
T 2jll_A          181 IGTRFQEYILAL  192 (389)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEe
Confidence            998776665554

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=96.60  E-value=0.00096  Score=59.94  Aligned_cols=88  Identities=15%  Similarity=0.305  Sum_probs=57.2

Q ss_pred             ceeecccccccccccccc--cCCCcEEEeecCeeccCCC------cccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        263 YLEIQEGKNVSLLCKVSA--IPEAKITWLFDGVPIQNES------MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g--~P~p~itW~~~g~~l~~~s------~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      .+.+..|+.++|.|...+  .....+.|.++...+....      .......++.+      .....|.|.++..+|.|.
T Consensus        12 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~------~~~~sL~I~~v~~~D~G~   85 (117)
T 3q0h_A           12 NISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP------GPGLGLTLQSLTVNDTGE   85 (117)
T ss_dssp             CEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEE------CSTTCEEECSCCGGGCEE
T ss_pred             CEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEe------CCceEEEEeeCChhhCEE
Confidence            467789999999999876  3345789998654322110      00000111111      114579999999999999


Q ss_pred             eeEeec-cCCCCcccceEEEEEe
Q psy12044        335 FVCVAE-NQAGSTSSNYTIRIVL  356 (767)
Q Consensus       335 Y~CvA~-N~~G~s~~s~sL~V~~  356 (767)
                      |.|.+. +..|.....+.|.|..
T Consensus        86 Y~C~v~~~~~g~~~~~~~L~V~~  108 (117)
T 3q0h_A           86 YFCIYHTYPDGTYTGRIFLEVLE  108 (117)
T ss_dssp             EEEEEEEETTCCEEEEEEEEEEC
T ss_pred             EEEEEEECCCCCeEEEEEEEEEc
Confidence            999864 4567666666776665

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=96.59  E-value=0.0021  Score=62.99  Aligned_cols=71  Identities=17%  Similarity=0.386  Sum_probs=49.5

Q ss_pred             eccccccccccccccc----CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        266 IQEGKNVSLLCKVSAI----PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~----P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      +.+|+.+.|.|.+.+.    |.|.++|.+++......                .....+.|.|..+...|.|.|+|.|.|
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~----------------~~~~~~~L~i~~~~~~~~g~Y~C~a~n  198 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP----------------ETTRSSELTLTPRPEDHGTNLTCQMKR  198 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS----------------SCCCSSEEEECCCTTCCSCEEEEEEEC
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC----------------CceeEEEEEEecccHHcCcEEEEEEEe
Confidence            5679999999999774    78999999977432110                012346789999988899999999999


Q ss_pred             CCCCcccceEE
Q psy12044        342 QAGSTSSNYTI  352 (767)
Q Consensus       342 ~~G~s~~s~sL  352 (767)
                      ..+.......+
T Consensus       199 ~~~~~~~~~~v  209 (214)
T 2zg1_A          199 QGAQVTTERTV  209 (214)
T ss_dssp             C----CCEEEE
T ss_pred             CCCCcceEEEE
Confidence            86554444333

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=96.59  E-value=0.0017  Score=69.93  Aligned_cols=91  Identities=21%  Similarity=0.335  Sum_probs=65.7

Q ss_pred             CCCCCCccceeecccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      |.+...+....+.+|+.+.|.|.+.+ .|.+.+.|.+++..+.....     + ....     ...+.|.|.++...|.|
T Consensus         7 P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~-----~-~~~~-----~~~~~L~i~~~~~~D~G   75 (395)
T 1bih_A            7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-----N-AALR-----KDEGSLVFLRPQASDEG   75 (395)
T ss_dssp             CEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT-----T-EEEC-----TTSCCEEESSCCGGGCE
T ss_pred             CEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccc-----e-EEEe-----cCCceEEEecCCCCCCc
Confidence            34444455677889999999999999 88999999998876643321     0 1111     12346999999999999


Q ss_pred             ceeEeeccCCCCccc-ceEEEEEe
Q psy12044        334 TFVCVAENQAGSTSS-NYTIRIVL  356 (767)
Q Consensus       334 tY~CvA~N~~G~s~~-s~sL~V~~  356 (767)
                      .|.|.+.|..|.... .+.+.+..
T Consensus        76 ~Y~C~a~n~~g~~~s~~~~l~v~~   99 (395)
T 1bih_A           76 HYQCFAETPAGVASSRVISFRKTY   99 (395)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEEE
T ss_pred             EEEEEEEeCCCeEEeEEEEEEEEE
Confidence            999999998876542 35555544

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=96.57  E-value=0.0029  Score=55.63  Aligned_cols=78  Identities=17%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             cceeecccccccccccccccCCCcEEEeecC--e---eccCC-Cccccc-ccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQNE-SMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~~~-s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      ..+.+.+|+.++|.|.+.+.+.+.+.|.+..  .   .+... ...... ..++...   .......|.|.++..+|.|.
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~DsG~   85 (108)
T 1qfw_M            9 KSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGS---GSATDFTLTISSVQAEDFAD   85 (108)
T ss_dssp             SCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECC---BCSSEEEEEESSCCTTCCSE
T ss_pred             CeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEE---cCCCEEEEEECCCChhhCEE
Confidence            3467889999999999988888899998742  1   11111 000000 1111111   12234689999999999999


Q ss_pred             eeEeeccC
Q psy12044        335 FVCVAENQ  342 (767)
Q Consensus       335 Y~CvA~N~  342 (767)
                      |.|.+.+.
T Consensus        86 Y~C~~~~~   93 (108)
T 1qfw_M           86 YHCGQTYN   93 (108)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEccC
Confidence            99999875

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=96.55  E-value=0.0022  Score=64.61  Aligned_cols=73  Identities=19%  Similarity=0.463  Sum_probs=57.1

Q ss_pred             ccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      +....+.+|+.+.|.|.+.+.+.+ .+.|.+++..+...                    ...|.|.++...|.|.|.|.+
T Consensus         8 p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~--------------------~~~l~i~~~~~~d~G~Y~C~~   67 (262)
T 3rjd_A            8 PPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS--------------------TPSYRITSASVNDSGEYRCQR   67 (262)
T ss_dssp             SCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC--------------------SSEEEESSCCGGGCEEEEEEE
T ss_pred             CCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc--------------------CCeEEEecCCcccCeEEEEEE
Confidence            344567899999999999999888 99999988765422                    246899999999999999999


Q ss_pred             ccCCCCcccceEEEEE
Q psy12044        340 ENQAGSTSSNYTIRIV  355 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~  355 (767)
                      .|..+..  .+.+.|.
T Consensus        68 ~~~~~s~--~~~l~v~   81 (262)
T 3rjd_A           68 GLSGRSD--PIQLEIH   81 (262)
T ss_dssp             SSSCCCC--CEEEEEE
T ss_pred             ecCCccc--cEEEEEe
Confidence            9876543  3444443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=96.54  E-value=0.0017  Score=69.87  Aligned_cols=85  Identities=20%  Similarity=0.420  Sum_probs=61.0

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|..+.|.|.+.+.|.+.+.|.+++............        .......+.|.|.++...|.|.|.|.|.|..
T Consensus       222 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~--------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  293 (388)
T 2v5m_A          222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN--------DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV  293 (388)
T ss_dssp             EEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCS--------SSEEEETTEEEESSCCGGGCEEEEEEEECSS
T ss_pred             eEEeeCCcEEEEEECCCCCCCEEEEEecCCCCccccccccc--------CceecccCEEEECcCCHHHCeEEEEEEecCC
Confidence            45678999999999999999999999964322111000000        0111224579999999999999999999999


Q ss_pred             CCcccceEEEEEe
Q psy12044        344 GSTSSNYTIRIVL  356 (767)
Q Consensus       344 G~s~~s~sL~V~~  356 (767)
                      |.....+.+.|..
T Consensus       294 g~~~~~~~l~V~~  306 (388)
T 2v5m_A          294 GGESVETVLTVTA  306 (388)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CceeEEEEEEEeC
Confidence            9877777666654

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=96.54  E-value=0.0033  Score=55.52  Aligned_cols=84  Identities=17%  Similarity=0.217  Sum_probs=54.7

Q ss_pred             ceeecccccccccccccc-cCCCcEEEeecCe-eccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        263 YLEIQEGKNVSLLCKVSA-IPEAKITWLFDGV-PIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~-~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ...+..|+.+.|.|.+.+ .+.|.++|.+.+. ........   .................|++..+..+|+|.|.|.|.
T Consensus        23 ~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~---~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn   99 (122)
T 1xau_A           23 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVG---PQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN   99 (122)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCB---TTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             cEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccc---eeeecceeccCCceeEEEEEeeEEEcCCccEEEEee
Confidence            346778999999999966 5799999998542 11111000   000001111111234579999999999999999999


Q ss_pred             cCCCCcccc
Q psy12044        341 NQAGSTSSN  349 (767)
Q Consensus       341 N~~G~s~~s  349 (767)
                      +..|...+.
T Consensus       100 ~~~g~ieSH  108 (122)
T 1xau_A          100 FNSQVINSH  108 (122)
T ss_dssp             ETTEEEECC
T ss_pred             CCCCceeee
Confidence            988876664

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=96.54  E-value=0.0014  Score=64.80  Aligned_cols=80  Identities=21%  Similarity=0.297  Sum_probs=52.7

Q ss_pred             ceeecccccc-cccccc-cccCCCcEEEeecCeeccCCCcccccccc---eeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        263 YLEIQEGKNV-SLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHA---VYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       263 ~~~v~~G~~v-sL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~---~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      ...+..|..+ .|.|.+ .+.|.+.+.|.+++..+............   ......+.....+.|.+......|.|.|+|
T Consensus       127 ~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C  206 (231)
T 2pet_A          127 TLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHC  206 (231)
T ss_dssp             SCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEE
T ss_pred             ceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEE
Confidence            3445678777 999999 89999999999998877654411111110   011122333344678887555556999999


Q ss_pred             eeccC
Q psy12044        338 VAENQ  342 (767)
Q Consensus       338 vA~N~  342 (767)
                      .|.|.
T Consensus       207 ~a~n~  211 (231)
T 2pet_A          207 AAHYS  211 (231)
T ss_dssp             EEEEE
T ss_pred             EEEcC
Confidence            99995

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=96.53  E-value=0.0012  Score=58.05  Aligned_cols=65  Identities=20%  Similarity=0.385  Sum_probs=47.6

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      .+..|++++|.|.+.+.+ ..+.|++++........             ........|.|.+++.+|.|.|.|.+.|..
T Consensus        15 ~v~~G~~VtL~C~~~~~~-~~~~w~k~g~~~~~~~~-------------~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~   79 (105)
T 2vsd_A           15 GVSLGDTVTLRCHLPRMA-AWVQLWLNGTLRFDKEK-------------DKEQDAAEFSFAVTNLEDAGTYQCRYQVSE   79 (105)
T ss_dssp             SCCTTCEEEEEEECCSSC-EEEEEEETTEEEEEEEE-------------CTTCSEEEEEEECCSGGGCEEEEEEEEEET
T ss_pred             CcCcCCCEEEEEEcCCCC-cEEEEEECCccceeeec-------------cCCCCEEEEEECCCCHHHCeEEEEEEEcCC
Confidence            567899999999987653 57889888765432110             012234679999999999999999998853

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=96.53  E-value=0.0016  Score=71.97  Aligned_cols=71  Identities=20%  Similarity=0.318  Sum_probs=55.7

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ....+.+|..+.|.|.+.+.|.|.+.|.+++..+...               +.     .+   .+...|.|.|.|.|.|
T Consensus       378 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~---------------g~-----~~---~v~~~d~G~Y~C~a~N  434 (450)
T 1z7z_I          378 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI---------------GE-----SV---TVTRDLEGTYLCRARS  434 (450)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT---------------TS-----CE---ECCGGGCEEEEEEEEE
T ss_pred             CceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC---------------CC-----eE---eEehhhCeEEEEEEEe
Confidence            3457788999999999999999999999987632111               10     11   5778999999999999


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      ..|.....+.+.|.
T Consensus       435 ~~G~~~~~~~l~V~  448 (450)
T 1z7z_I          435 TQGEVTREVTVNVL  448 (450)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCceeEEEEEEEE
Confidence            99998887777664

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=96.53  E-value=0.0018  Score=64.80  Aligned_cols=78  Identities=21%  Similarity=0.349  Sum_probs=58.3

Q ss_pred             ceeecccccccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      .+.+..|..+.|.|.+ +.|.|  .|.|......+.          ....     ......|.|.+++.+|.|.|.|.+.
T Consensus        16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~----------~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~   79 (210)
T 1gsm_A           16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLG----------AVQS-----DTGRSVLTVRNASLSAAGTRVCVGS   79 (210)
T ss_dssp             EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC----------CEEE-----ESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceEEeCCCCEEEEEEC-CCCCCCcceEEeecccccC----------cEEe-----cCCccEEEECccCcccCceEEEEEE
Confidence            3578899999999999 99888  999998432220          0110     1234679999999999999999999


Q ss_pred             cCCCCcccceEEEEEe
Q psy12044        341 NQAGSTSSNYTIRIVL  356 (767)
Q Consensus       341 N~~G~s~~s~sL~V~~  356 (767)
                      |..+.....+.+.|..
T Consensus        80 n~~~~~~~~~~ltV~~   95 (210)
T 1gsm_A           80 CGGRTFQHTVQLLVYA   95 (210)
T ss_dssp             ETTEEEEEEEEEEEEB
T ss_pred             eCCCceEEEEEEEEEe
Confidence            9887766666666654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=96.53  E-value=0.0026  Score=67.32  Aligned_cols=72  Identities=15%  Similarity=0.294  Sum_probs=55.3

Q ss_pred             eecccccccccccccccC-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC-
Q psy12044        265 EIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ-  342 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~-  342 (767)
                      .+.+|..+.|.|.+.+.| .+.+.|.+++..+.....     + +.       .....|.|.++..+|.|.|+|.+.|. 
T Consensus       139 ~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~-----~-~~-------~~~~~L~I~~v~~~D~G~Y~C~a~n~~  205 (329)
T 3oq3_B          139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT-----K-YS-------QSGQNLIIHNPELEDSGRYDCYVHYDD  205 (329)
T ss_dssp             TSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSS-----S-EE-------EETTEEEECSCCGGGCEEEEEEEEECC
T ss_pred             EEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCc-----e-Ee-------cCCCEEEEeecChhhCEEEEEEEEecc
Confidence            456799999999999999 999999998877632111     0 11       11367999999999999999999987 


Q ss_pred             -CCCcccc
Q psy12044        343 -AGSTSSN  349 (767)
Q Consensus       343 -~G~s~~s  349 (767)
                       .|.....
T Consensus       206 ~~g~~~~~  213 (329)
T 3oq3_B          206 VRIKNDIV  213 (329)
T ss_dssp             TTSSSCEE
T ss_pred             cCCCceeE
Confidence             6665554

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=96.53  E-value=0.0017  Score=62.52  Aligned_cols=87  Identities=17%  Similarity=0.152  Sum_probs=57.1

Q ss_pred             ceeecccccccccccccc--cCCCcEEEeecCeeccCCCc---ccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        263 YLEIQEGKNVSLLCKVSA--IPEAKITWLFDGVPIQNESM---SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g--~P~p~itW~~~g~~l~~~s~---~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      .+.+.+|+.+.|.|....  .+.+.+.|.+++..+.....   .......+...      ..+.|.|.++..+|.|.|.|
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~------~~gsL~I~~v~~~D~G~Y~C   78 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL------ANGDLKIKNLTRDDSGTYNV   78 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC------TTSCEEESSCCGGGCEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC------CCCcEEEcccccccCEEEEE
Confidence            356678999999996544  56779999998764431110   00011111111      12459999999999999999


Q ss_pred             eeccCCCCc--ccceEEEEE
Q psy12044        338 VAENQAGST--SSNYTIRIV  355 (767)
Q Consensus       338 vA~N~~G~s--~~s~sL~V~  355 (767)
                      .+.|..|..  ...+.+.|.
T Consensus        79 ~~~n~~g~~~~~~~~~l~V~   98 (176)
T 1hng_A           79 TVYSTNGTRILNKALDLRIL   98 (176)
T ss_dssp             EEEETTCCEEEEEEEEEEEE
T ss_pred             EEEeCCCCEEEEEEEEEEEe
Confidence            999998886  444555444

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=96.53  E-value=0.0012  Score=67.92  Aligned_cols=87  Identities=18%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             ceeecccccccccccccccCC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...+..|..+.|.|.+.+.+. +.+.|..++..+......       .+ ..+.....+.|.|.++..+|.|.|+|.|.|
T Consensus       195 ~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~-------~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  266 (292)
T 4dkd_C          195 ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQS-------DF-HNNRYQKVLTLNLDQVDFQHAGNYSCVASN  266 (292)
T ss_dssp             CBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEE-------EE-ETTEEEEEEEEEESSCCTTSCEEEEEEEEC
T ss_pred             ceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccc-------ee-ccceeeeEEEEEECccChhcCeEEEEEEec
Confidence            344568999999999998775 456776666544221110       00 111123456899999999999999999999


Q ss_pred             CCCCcccceEEEEEee
Q psy12044        342 QAGSTSSNYTIRIVLK  357 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~~  357 (767)
                      ..|.....+.+.|..+
T Consensus       267 ~~g~~~~~~~l~V~~~  282 (292)
T 4dkd_C          267 VQGKHSTSMFFRVVES  282 (292)
T ss_dssp             SSCEEEEEEEECC---
T ss_pred             CCCCceeEEEEEEeeC
Confidence            9999877776666543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=96.52  E-value=0.0012  Score=68.63  Aligned_cols=73  Identities=26%  Similarity=0.346  Sum_probs=56.3

Q ss_pred             ceeeccccccccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...+.+|+.+.|.|.+.+. |.+.+.|.+++..+......       ..     ......|.|.++...|.|.|.|.+.|
T Consensus        15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~-------~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~n   82 (317)
T 2y25_A           15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH-------DF-----KDGICTLLITEFSKKDAGIYEVILKD   82 (317)
T ss_dssp             EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----------------CCEEEEETTCCSTTCSCEEEEEES
T ss_pred             eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcE-------EE-----ECCeEEEEEccCCcccCeEEEEEEEC
Confidence            4678899999999999887 78999999998776532211       00     12346899999999999999999999


Q ss_pred             CCCCcc
Q psy12044        342 QAGSTS  347 (767)
Q Consensus       342 ~~G~s~  347 (767)
                      ..|...
T Consensus        83 ~~g~~~   88 (317)
T 2y25_A           83 DRGKDK   88 (317)
T ss_dssp             SSCEEE
T ss_pred             CCCcEE
Confidence            887543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=96.52  E-value=0.0029  Score=59.54  Aligned_cols=71  Identities=18%  Similarity=0.478  Sum_probs=53.3

Q ss_pred             ceeecccccccccccccccC-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...+.+|+.+.|.|.+.+.| .+.+.|.+++..+...                    ...+.+.++...|.|.|.|.+.+
T Consensus        13 ~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~--------------------~~~~~~~~~~~~d~G~Y~C~~~~   72 (170)
T 3ry4_A           13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH--------------------TQPSYRFKANNNDSGEYTCQTGQ   72 (170)
T ss_dssp             CSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC--------------------CSSEEEEECCGGGCEEEEEEETT
T ss_pred             CeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC--------------------ccceEEEecccccCeEEEEEEeC
Confidence            34678899999999999987 6799999988766432                    12356778999999999999997


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      ..+..  .+.+.|.
T Consensus        73 ~~~s~--~~~l~v~   84 (170)
T 3ry4_A           73 TSLSD--PVHLTVL   84 (170)
T ss_dssp             SBCCC--CEEEEEE
T ss_pred             CCceE--eEEEEEE
Confidence            54433  3444444

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=96.52  E-value=0.0017  Score=62.29  Aligned_cols=86  Identities=15%  Similarity=0.169  Sum_probs=57.3

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccc-----cccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSAS-----ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~-----~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      .+.+..|+.++|.|.+.. |.+.+.|.+++..+........     ...+..+     ....+.|.|.++...|.|.|.|
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~-----~~~~~sL~I~~v~~~DsG~Y~C   77 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL-----DTVSGSLTIYNLTSSDEDEYEM   77 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE-----CTTTCCEEECSCCGGGCEEEEE
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEE-----eCCCCeEEECCCChhhCceEEE
Confidence            356778999999999854 8899999997654321110000     0001111     0134679999999999999999


Q ss_pred             eeccCCCCcccceEEEEEe
Q psy12044        338 VAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       338 vA~N~~G~s~~s~sL~V~~  356 (767)
                      .+.|..|  ...+.+.|..
T Consensus        78 ~~~n~~~--~~~~~L~V~~   94 (171)
T 1ccz_A           78 ESPNITD--TMKFFLYVLE   94 (171)
T ss_dssp             ECTTCCS--CEEEEEEEEC
T ss_pred             EEeCCCC--cEEEEEEEEC
Confidence            9999877  4555665543

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=96.52  E-value=0.0028  Score=66.81  Aligned_cols=86  Identities=21%  Similarity=0.344  Sum_probs=56.4

Q ss_pred             Cccceeeccccccccccccccc-CCCcEEEeecCeeccCCCcccc--cccceeecccC--cceeeeEEEEeeeccCCCCc
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSAS--ESHAVYSTEEG--TEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~--~~~~~~~~~~g--~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      .+....+.+|+.+.|.|.+.+. |.+.+.|++++......-....  ....+......  .......|.|.++..+|.|.
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   88 (327)
T 2wng_A            9 PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGT   88 (327)
T ss_dssp             CCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEE
T ss_pred             CCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeE
Confidence            3456788899999999999987 8899999997643210000000  00011111111  11345679999999999999


Q ss_pred             eeEeeccCCCC
Q psy12044        335 FVCVAENQAGS  345 (767)
Q Consensus       335 Y~CvA~N~~G~  345 (767)
                      |.|.+.|..+.
T Consensus        89 Y~C~a~n~~~~   99 (327)
T 2wng_A           89 YYCVKFRKGSP   99 (327)
T ss_dssp             EEEEEEESSTT
T ss_pred             EEEEeecCCCc
Confidence            99999998664

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=96.52  E-value=0.0022  Score=56.89  Aligned_cols=83  Identities=22%  Similarity=0.424  Sum_probs=52.3

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--ee---ccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VP---IQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~---l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      +..+.+.+|+.++|.|.+.+.+ +.+.|++..  ..   +...........++.............|.|.++..+|.|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y   86 (113)
T 1h5b_A            8 PSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTY   86 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEE
T ss_pred             CCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhCEEE
Confidence            3456788999999999988755 689998742  11   10000000001112222111133456899999999999999


Q ss_pred             eEeeccCCC
Q psy12044        336 VCVAENQAG  344 (767)
Q Consensus       336 ~CvA~N~~G  344 (767)
                      .|.+.|..|
T Consensus        87 ~C~~~n~~~   95 (113)
T 1h5b_A           87 FCAAEASSG   95 (113)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEecCCC
Confidence            999998765

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=96.49  E-value=0.0024  Score=61.53  Aligned_cols=67  Identities=15%  Similarity=0.265  Sum_probs=50.4

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+.+|+.+.|.|.+.+.+ +.+.|++++..+.....              .......|.|.++..+|.|.|.|.|.|..
T Consensus       103 ~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~--------------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~  167 (184)
T 2gi7_A          103 PAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP--------------ERWYRASFPIITVTAAHSGTYRCYSFSSR  167 (184)
T ss_dssp             CSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC--------------CEEEEESSSEEEETTCCSEEEEEEEECTT
T ss_pred             ceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec--------------CCCceEEEEEccCCccCCeEEEEEEEeCC
Confidence            3566899999999987654 69999998766543110              12234578899999999999999999976


Q ss_pred             CC
Q psy12044        344 GS  345 (767)
Q Consensus       344 G~  345 (767)
                      +.
T Consensus       168 ~~  169 (184)
T 2gi7_A          168 DP  169 (184)
T ss_dssp             ST
T ss_pred             CC
Confidence            53

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=96.48  E-value=0.0015  Score=78.21  Aligned_cols=86  Identities=21%  Similarity=0.342  Sum_probs=62.9

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.|.++|.+++..+..........       .......++|.|.++..+|.|.|.|.|.|.
T Consensus       723 ~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~-------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  795 (816)
T 3dmk_A          723 DKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKS-------DNIRVEEGTLHVDNIQKTNEGYYLCEAING  795 (816)
T ss_dssp             CEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCB-------TTEEEETTEEEECSCCGGGCEEEEEEEECS
T ss_pred             cceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccC-------CCEEecCCEEEECcCChhhCeEEEEEEEeC
Confidence            4566789999999999999999999999765443221110000       011112357999999999999999999999


Q ss_pred             CCCcccceEEEEE
Q psy12044        343 AGSTSSNYTIRIV  355 (767)
Q Consensus       343 ~G~s~~s~sL~V~  355 (767)
                      .|.+.+.+.+...
T Consensus       796 ~G~~~~~v~~~~~  808 (816)
T 3dmk_A          796 IGSGLSAVIMISV  808 (816)
T ss_dssp             SSSCEEEEEEEEE
T ss_pred             CCCCcEEEEEEEe
Confidence            9999887766544

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=96.48  E-value=0.0038  Score=61.62  Aligned_cols=79  Identities=19%  Similarity=0.155  Sum_probs=52.0

Q ss_pred             cceeeccc--ccccccccccccCCCcEEEeec---CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        262 FYLEIQEG--KNVSLLCKVSAIPEAKITWLFD---GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       262 ~~~~v~~G--~~vsL~C~a~g~P~p~itW~~~---g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      ..+.+.+|  +.+.|.|.+.+ |.+.++|++.   +..+.....       ...      .....|.|.++..+|.|.|.
T Consensus        15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~-------~~~------~~~~~l~I~~v~~~D~G~Y~   80 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNR-------ISW------DSKKGFTIPSYMISYAGMVF   80 (213)
T ss_dssp             EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSS-------CEE------ETTTEEEEEGGGTTTCSEEE
T ss_pred             eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCc-------ccc------cCCccEEEccCChhcCceEE
Confidence            56778899  99999999986 7799999874   444332211       111      11235899999999999999


Q ss_pred             EeeccCCCCcccc-eEEEE
Q psy12044        337 CVAENQAGSTSSN-YTIRI  354 (767)
Q Consensus       337 CvA~N~~G~s~~s-~sL~V  354 (767)
                      |.|.|..+..... +.+.+
T Consensus        81 C~a~n~~~~~~s~~~~l~v   99 (213)
T 2x1w_L           81 CEAKINDESYQSIMYIVVV   99 (213)
T ss_dssp             EEEC----CEECCCEEEEE
T ss_pred             EEEEECCeeEEEEEEEEEE
Confidence            9999854443322 44544

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=96.48  E-value=0.0044  Score=54.69  Aligned_cols=92  Identities=12%  Similarity=0.112  Sum_probs=54.2

Q ss_pred             cceeecccccccccccccccCC-CcEEEeecCe-----eccC-CCcc-cccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGV-----PIQN-ESMS-ASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~-p~itW~~~g~-----~l~~-~s~~-~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      ..+.+.+|+.++|.|....... ..+.|.+...     .+.. .... .....++.... ........|.|.++..+|.|
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~~sL~I~~~~~~DsG   87 (113)
T 1zox_A            9 EEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRD-NQRDFIFTVTMEDLRMSDAG   87 (113)
T ss_dssp             SEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEE-ETTTTEEEEEECSCCGGGCE
T ss_pred             CEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEE-CCcCCEEEEEEccCCHHHCE
Confidence            3467889999999999876543 3599998431     1111 0000 00011111111 11223468999999999999


Q ss_pred             ceeEeeccCCCCcccceEEEE
Q psy12044        334 TFVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       334 tY~CvA~N~~G~s~~s~sL~V  354 (767)
                      .|.|.+.+........+.|.|
T Consensus        88 ~Y~C~v~~~~~~~~~~v~L~V  108 (113)
T 1zox_A           88 IYWCGITKGGLDPMFKVTVNI  108 (113)
T ss_dssp             EEEEEECCSSSCCEEEEEEEE
T ss_pred             EEEEeeEcCCCCccEEEEEEE
Confidence            999999887533333343333

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=96.47  E-value=0.0038  Score=64.15  Aligned_cols=86  Identities=21%  Similarity=0.266  Sum_probs=56.6

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +.+......+.+|+.+.|.|.+.+.    +.|.+++..+...         .....  .....+.|.|.++...|.|.|.
T Consensus         3 i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~---------~~~~~--~~~~~~~L~i~~~~~~D~G~Y~   67 (289)
T 3mjg_X            3 VTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQE---------MAKAQ--DGTFSSVLTLTNLTGLDTGEYF   67 (289)
T ss_dssp             BCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEE---------EEECT--TSCEEEEEEECSCCGGGCEEEE
T ss_pred             ecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcccc---------eeccC--CCceeEEEEEccCChhhCEEEE
Confidence            4444455678899999999998875    9999988665210         11111  1123578999999999999999


Q ss_pred             EeeccCCCC-cccceEEEEEee
Q psy12044        337 CVAENQAGS-TSSNYTIRIVLK  357 (767)
Q Consensus       337 CvA~N~~G~-s~~s~sL~V~~~  357 (767)
                      |.+.|..|. ......+.+.+.
T Consensus        68 C~a~n~~g~~~~~~~~~~v~v~   89 (289)
T 3mjg_X           68 CTHNDSRGLETDERKRLYIFVP   89 (289)
T ss_dssp             EECCC------CCCEEEEEECC
T ss_pred             EEEcccCCCCcCcEEeEEEEEE
Confidence            999998876 333455555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.47  E-value=0.00083  Score=66.46  Aligned_cols=83  Identities=12%  Similarity=0.135  Sum_probs=41.7

Q ss_pred             CCccEEEccCC-CCCcc----CcccccCCCCCCEEEccCCCCCCCCCCC----CCCCCCCcEEECCCCcCcccc----cC
Q psy12044         75 VNLQKIYLSRC-RISVI----DSKAFRGLTNLVDLDFSHNVLQTVPSDT----FPDYPSLMKLTLSGNPIKQIK----TG  141 (767)
Q Consensus        75 ~~L~~L~Ls~N-~L~~i----~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~----f~~l~~L~~L~Ls~N~l~~l~----~~  141 (767)
                      +.|+.|+|++| .|...    +..++..-..|+.|+|++|.|.......    +..-..|+.|+|++|.|....    ..
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            45666777664 55532    2344555556666666666665322222    223345666666666655321    12


Q ss_pred             CcCCCCCccEEeccCC
Q psy12044        142 AFQPLSYLVTLELSKC  157 (767)
Q Consensus       142 ~~~~l~~L~~L~Ls~N  157 (767)
                      ++..-..|+.|+|++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            2333344556665543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=96.46  E-value=0.0024  Score=65.58  Aligned_cols=77  Identities=29%  Similarity=0.522  Sum_probs=55.7

Q ss_pred             ccceeecccccccccccccccC-CCcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP-EAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      +....+..|+.+.|.|.+.+.+ .+.+.|.+ ++..+.....     + +....  .....+.|.|.++...|.|.|.|.
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~-----~-~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~   80 (291)
T 1qz1_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQ-----R-ISVVW--NDDDSSTLTIYNANIDDAGIYKCV   80 (291)
T ss_dssp             SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCS-----S-EEEEE--EETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCc-----e-EEEEE--cCCCeEEEEEecCCCCCCEEEEEE
Confidence            3455788999999999999987 68999998 6655532211     1 11111  012346899999999999999999


Q ss_pred             eccCCCC
Q psy12044        339 AENQAGS  345 (767)
Q Consensus       339 A~N~~G~  345 (767)
                      +.|..|.
T Consensus        81 ~~n~~g~   87 (291)
T 1qz1_A           81 VTAEDGT   87 (291)
T ss_dssp             EECTTSC
T ss_pred             EEcCCCC
Confidence            9998864

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=96.44  E-value=0.0023  Score=63.68  Aligned_cols=78  Identities=13%  Similarity=0.308  Sum_probs=53.8

Q ss_pred             cccccccccccccccCC--CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        267 QEGKNVSLLCKVSAIPE--AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       267 ~~G~~vsL~C~a~g~P~--p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      ..|+.+.|.|.+.+.+.  +.++|.+++..+......    .......++.....+.|.|..+...|.|.|+|.|.|..+
T Consensus       148 ~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~----~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  223 (234)
T 2j6e_L          148 LQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVET----TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  223 (234)
T ss_dssp             HTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEE----CCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTB
T ss_pred             hcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccc----cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCC
Confidence            35789999999998643  389999998876543110    000111223334456889999999999999999999877


Q ss_pred             Cccc
Q psy12044        345 STSS  348 (767)
Q Consensus       345 ~s~~  348 (767)
                      ...+
T Consensus       224 ~~~~  227 (234)
T 2j6e_L          224 TVEK  227 (234)
T ss_dssp             CCCE
T ss_pred             ceEE
Confidence            6443

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=96.44  E-value=0.0015  Score=69.14  Aligned_cols=90  Identities=18%  Similarity=0.251  Sum_probs=64.6

Q ss_pred             CCCccceeeccccccccccccc-------ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccC
Q psy12044        258 TPSTFYLEIQEGKNVSLLCKVS-------AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       258 ~~~~~~~~v~~G~~vsL~C~a~-------g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      ...+....+.+|+.+.|.|.+.       +.|.+.+.|.+++..+......   ...+       ....+.|.|.++...
T Consensus        22 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~---~~~~-------~~~~~~L~i~~v~~~   91 (339)
T 3o4o_C           22 GRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE---ETRM-------WAQDGALWLLPALQE   91 (339)
T ss_dssp             EECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCS---SSCE-------EEETTEEEESSBCTT
T ss_pred             CcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccc---cccE-------EeeCCeEEECCCCcc
Confidence            3344567788999999999998       8899999999987653211100   0001       112357999999999


Q ss_pred             CCCceeEeeccCCCCcccceEEEEEee
Q psy12044        331 DNGTFVCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       331 D~GtY~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      |.|.|.|.+.|..|.....+.+.|...
T Consensus        92 D~G~Y~C~~~n~~g~~~~~~~l~V~~~  118 (339)
T 3o4o_C           92 DSGTYVCTTRNASYCDKMSIELRVFEN  118 (339)
T ss_dssp             CCEEEECCEEETTEEEEEEEEEEEECS
T ss_pred             cCEEEEEEEECCcceEEEEEEEEEEcC
Confidence            999999999998887666666666543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=96.44  E-value=0.0015  Score=65.29  Aligned_cols=71  Identities=11%  Similarity=0.068  Sum_probs=50.4

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeee--EEEEeeeccCCCCceeEeecc
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS--ELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s--~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ..+.+|+.++|.|.+.+ +.+.+.|++++..+.....     . .  .   ......  .|.|.++..+|.|.|.|.+.|
T Consensus        18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-----~-~--~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   85 (218)
T 1uct_A           18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-----R-R--L---KFWNETDPEFVIDHMDANKAGRYQCQYRI   85 (218)
T ss_dssp             SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-----E-E--C---C----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-----c-c--C---CCCcceeeEEEEcccccccCEEEEEEEEc
Confidence            35788999999999987 6789999998755432110     0 0  0   011123  799999999999999999999


Q ss_pred             CCCCc
Q psy12044        342 QAGST  346 (767)
Q Consensus       342 ~~G~s  346 (767)
                      ..|..
T Consensus        86 ~~~~~   90 (218)
T 1uct_A           86 GHYRF   90 (218)
T ss_dssp             TTTEE
T ss_pred             CCCce
Confidence            76643

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=96.42  E-value=0.0022  Score=63.43  Aligned_cols=97  Identities=19%  Similarity=0.359  Sum_probs=60.3

Q ss_pred             ccceeecccccccccccccccCC-CcEEEeecCeeccCCCcc-----ccc-ccceeecccC----cceeeeEEEEeeecc
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMS-----ASE-SHAVYSTEEG----TEIKKSELLIYNSNI  329 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~-p~itW~~~g~~l~~~s~~-----~~~-~~~~~~~~~g----~~~~~s~L~I~nvs~  329 (767)
                      +....+.+|+.+.|.|.+.+.+. +.+.|.+++.......+.     ... .....+....    .....+.|.|.++..
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~   86 (231)
T 2pet_A            7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQV   86 (231)
T ss_dssp             CSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCG
T ss_pred             CCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCc
Confidence            34567889999999999999985 899999854321100000     000 0001100000    011123499999999


Q ss_pred             CCCCceeEeeccCC-CCcccceEEEEEee
Q psy12044        330 DDNGTFVCVAENQA-GSTSSNYTIRIVLK  357 (767)
Q Consensus       330 sD~GtY~CvA~N~~-G~s~~s~sL~V~~~  357 (767)
                      .|.|.|.|.+.+.. +.....+.+.|...
T Consensus        87 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~  115 (231)
T 2pet_A           87 GDERDYVCVVRAGAAGTAEATARLNVFAK  115 (231)
T ss_dssp             GGCEEEEEEEECGGGCEEEEEEEEEEEBC
T ss_pred             ccCceEEEEEEecCCCceEEEEEEEEEec
Confidence            99999999999987 66666666666543

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=96.42  E-value=0.0028  Score=55.66  Aligned_cols=83  Identities=11%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             ceeecccccccccccccccCCC-----cEEEeecCee-c---cCCCc-----ccccccceeecccCcceeeeEEEEeeec
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEA-----KITWLFDGVP-I---QNESM-----SASESHAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p-----~itW~~~g~~-l---~~~s~-----~~~~~~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      .+.+..|+.+.|.|...+.|.+     .+.|.+++.. +   .....     ......+..+.     .....|.|.++.
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~sL~I~~v~   77 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD-----SDSWTLRLHNLQ   77 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEE-----TTTTEEEECSCC
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEE-----CCCEEEEEcCCC
Confidence            3567789999999998765543     3999986431 1   01000     00000111111     113689999999


Q ss_pred             cCCCCceeEeeccCCCCcccce
Q psy12044        329 IDDNGTFVCVAENQAGSTSSNY  350 (767)
Q Consensus       329 ~sD~GtY~CvA~N~~G~s~~s~  350 (767)
                      .+|.|.|.|.+.+..+.....+
T Consensus        78 ~~D~G~Y~C~v~~~~~~~~~~~   99 (110)
T 1ncn_A           78 IKDKGLYQCIIHHKKPTGMIRI   99 (110)
T ss_dssp             GGGCEEEEEEEEEECSSSEEEE
T ss_pred             hHHCEEEEEEEEcCCCCceEEE
Confidence            9999999999998877655443

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=96.40  E-value=0.0038  Score=61.35  Aligned_cols=83  Identities=16%  Similarity=0.192  Sum_probs=53.8

Q ss_pred             eecccccccccccccccCCCcEEEeec-CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFD-GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~-g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      .+..|..+.|.|.+.+.|.|.+.|.++ +..+......     .......+.....+.   ..+...|.|.|+|.|.|..
T Consensus       127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~---l~v~~~d~g~Y~C~a~n~~  198 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTT-----TNSKREEKLFNVTST---LRINTTTNEIFYCTFRRLD  198 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEE-----EECC----CEEEEEE---EEEECCTTCEEEEEEEETT
T ss_pred             eecCCCcEEEEEEecCCCCCeEEEEECCCceecCccce-----EEEcCCCCCEEEEEE---EEEeccCCcEEEEEEEeCc
Confidence            456789999999999999999999997 5444321110     000111121112222   2445689999999999999


Q ss_pred             CCcccceEEEEE
Q psy12044        344 GSTSSNYTIRIV  355 (767)
Q Consensus       344 G~s~~s~sL~V~  355 (767)
                      |.....+.+.|.
T Consensus       199 g~~~~~~~l~v~  210 (222)
T 3sbw_C          199 PEENHTAELVIP  210 (222)
T ss_dssp             TTEEEEEEEECC
T ss_pred             cceeeEEEEEec
Confidence            988777666554

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=96.40  E-value=0.0024  Score=62.71  Aligned_cols=79  Identities=14%  Similarity=0.235  Sum_probs=52.7

Q ss_pred             ceeeccccccccccccccc-CCCcEEEeecC--eec---c-CCC----ccccc-ccceeecccCcceeeeEEEEeeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAI-PEAKITWLFDG--VPI---Q-NES----MSASE-SHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g--~~l---~-~~s----~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      .+.+.+|+.+.|.|.+.+. +.+.+.|++..  ...   . ...    ..... ...+....   ......|.|.++..+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~   85 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS---SGADRYLSISNIQPE   85 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE---ETTEEEEEESSCCGG
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec---CCceEEEEEccCCcc
Confidence            6778899999999999999 89999998832  111   0 000    00000 00111110   223467999999999


Q ss_pred             CCCceeEeeccCCC
Q psy12044        331 DNGTFVCVAENQAG  344 (767)
Q Consensus       331 D~GtY~CvA~N~~G  344 (767)
                      |.|.|.|.+.+..|
T Consensus        86 D~G~Y~C~~~~~~~   99 (218)
T 3s96_B           86 DEAIYICGVGDTIK   99 (218)
T ss_dssp             GCEEEEEEEEEEET
T ss_pred             cCEEEEEEEecCCC
Confidence            99999999998876

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=96.40  E-value=0.0025  Score=62.11  Aligned_cols=89  Identities=21%  Similarity=0.335  Sum_probs=60.0

Q ss_pred             ccceeecccccccccccccc-cCCCcEEEeecCeeccCCCc--c--------ccc-ccceeecccCcceeeeEEEEeeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESM--S--------ASE-SHAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~--~--------~~~-~~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      +..+.+.+|+.+.|.|.+.+ .+.+.+.|.+++..+.....  .        ... ..+..+.      ....|.|.++.
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~------~~~sL~I~~v~   78 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT------QSYSLQLSNLK   78 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC------TTCCEEECSCC
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC------CCeEEEECCCC
Confidence            44567889999999999875 45579999998654321100  0        000 0011111      24679999999


Q ss_pred             cCCCCceeEeeccCCCCcccceEEEEE
Q psy12044        329 IDDNGTFVCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       329 ~sD~GtY~CvA~N~~G~s~~s~sL~V~  355 (767)
                      .+|.|.|.|.+.+..|.....+.+.|.
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~  105 (193)
T 2if7_A           79 MEDTGSYRAQISTKTSAKLSSYTLRIL  105 (193)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cccCceEEEEEEecCCCeEEEEEEEEE
Confidence            999999999999988876555566554

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=96.39  E-value=0.0025  Score=68.91  Aligned_cols=82  Identities=32%  Similarity=0.447  Sum_probs=63.5

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|+.+.|.|.+.+.|.+.+.|.+++..+......      ...      ...+.|.|.++...|.|.|.|.+.|.
T Consensus       230 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~------~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~  297 (403)
T 3laf_A          230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK------YSL------LGGSNLLISNVTDDDSGTYTCVVTYK  297 (403)
T ss_dssp             CEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSS------EEE------ETTTEEEECSCCGGGCEEEEEEEEET
T ss_pred             ceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCce------EEE------CCccEEEEeCCCHHHCEEEEEEEEcC
Confidence            456678999999999999999999999988766432211      111      11246999999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus       298 ~g~~~~~~~l~V~~  311 (403)
T 3laf_A          298 NENISASAELTVLV  311 (403)
T ss_dssp             TEEEEEEEEEEEEE
T ss_pred             CCceEEEEEEEEEC
Confidence            98877777777655

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=96.37  E-value=0.0033  Score=70.99  Aligned_cols=97  Identities=20%  Similarity=0.391  Sum_probs=68.4

Q ss_pred             CCCCCCccceeecccccccccccccccCCCc-EEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAK-ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~-itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      |.+........+..|+.+.|.|.+.+.|.+. +.|.+++..+....     .....+.........+.|.|.++...|.|
T Consensus       212 p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~I~~~~~~D~G  286 (524)
T 2ec8_A          212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQE-----KYNSWHHGDFNYERQATLTISSARVNDSG  286 (524)
T ss_dssp             CEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCE-----EEEEEECSSSCEEEEEEEEESSCCTTTCE
T ss_pred             CcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCcccc-----ccccccccCCccceEEEEEECCCCHHHCE
Confidence            3343444455788999999999999999887 99999876531000     00011111112345678999999999999


Q ss_pred             ceeEeeccCCCCcccceEEEEEe
Q psy12044        334 TFVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       334 tY~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      .|.|.+.|..|.....+.+.|..
T Consensus       287 ~Y~C~a~n~~g~~~~~~~l~V~~  309 (524)
T 2ec8_A          287 VFMCYANNTFGSANVTTTLEVVD  309 (524)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEES
T ss_pred             EEEEEEEecCCceEEEEEEEEec
Confidence            99999999999887777666653

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=96.37  E-value=0.0016  Score=63.27  Aligned_cols=72  Identities=11%  Similarity=0.049  Sum_probs=44.0

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+.+|+.++|.|.+.+.| +.+.|.+++..+......      ....  ........|.|.++..+|.|.|.|.|.|..
T Consensus       109 ~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~------~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  179 (196)
T 2d3v_A          109 PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLD------SQLT--PSGQFQALFPVGPVTPSHRWMLRCYGSRRH  179 (196)
T ss_dssp             --------CEEEEEESSCC-SEEEEEEC---CCEEEEE------CEEC--TTSCEEEEEECCCCBTTBCEEEEEEEEETT
T ss_pred             ccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccc------cccc--cCCCceeEEEeeecCcccCeeEEEEEEccC
Confidence            3567899999999999998 899999988655321110      0000  011234689999999999999999999865


Q ss_pred             C
Q psy12044        344 G  344 (767)
Q Consensus       344 G  344 (767)
                      +
T Consensus       180 ~  180 (196)
T 2d3v_A          180 I  180 (196)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=96.37  E-value=0.0018  Score=67.70  Aligned_cols=44  Identities=9%  Similarity=0.106  Sum_probs=39.8

Q ss_pred             CCcccHHHHHhcccCCCCCCC------CccccCCCCcceEEeeCCceEEEec
Q psy12044        428 SPKYTSVNATSATCMDKVNGG------YIIADGHNDMMLYATDSGILVATNN  473 (767)
Q Consensus       428 ~~~fs~~El~~AT~~nnFs~~------nlIG~GgfG~VYKG~~dG~~VA~~~  473 (767)
                      .+.|++.++.++|  ++|+..      +.||+|+||.||+|..+|..||++.
T Consensus        12 ~~~~~~~~l~~~~--~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~   61 (307)
T 2nru_A           12 FHSFSFYELKNVT--NNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKK   61 (307)
T ss_dssp             CEECCHHHHHHHT--TTTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEE
T ss_pred             CCcccHHHHHHHH--cccccccccccCCccccCCCeEEEEEEECCceEEEEE
Confidence            4568999999999  999988      8999999999999997788899876

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=96.36  E-value=0.0027  Score=55.87  Aligned_cols=79  Identities=14%  Similarity=0.184  Sum_probs=51.7

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--e---ecc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|.+..  .   .+. ........ ..++...   .......|.|.++..+|.|
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~---~~~~~~~L~I~~v~~~DsG   86 (109)
T 2q20_A           10 PSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGS---GSGTDFTFTISSLQPEDIA   86 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred             CCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEe---ccCCEEEEEECCCChhhCE
Confidence            34567889999999999988888899999843  1   111 10000000 1111111   0123457999999999999


Q ss_pred             ceeEeeccC
Q psy12044        334 TFVCVAENQ  342 (767)
Q Consensus       334 tY~CvA~N~  342 (767)
                      .|.|.+.+.
T Consensus        87 ~Y~C~~~~~   95 (109)
T 2q20_A           87 TYYCQQYDN   95 (109)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEeeC
Confidence            999999874

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=96.35  E-value=0.002  Score=62.64  Aligned_cols=70  Identities=17%  Similarity=0.297  Sum_probs=50.6

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+..|+.++|.|.+.+ +.+.+.|++++..+......      ..   .........|.|.++..+|.|.|.|.|.|..+
T Consensus       110 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~------~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLR------SE---HGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEE------EE---EEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeec------cc---ccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            5678999999999887 45689999987654321110      00   00112356799999999999999999999876

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=96.35  E-value=0.003  Score=63.06  Aligned_cols=66  Identities=17%  Similarity=0.296  Sum_probs=50.5

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+.+|+.++|.|.+.+.+.+.+.|.+++..+....         .     .......|.|.++..+|.|.|.|.|.|..
T Consensus       115 ~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~---------~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          115 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH---------Q-----SGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE---------E-----ECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccc---------c-----CCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            356789999999977777888999999886553210         0     01124679999999999999999998764

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.34  E-value=0.0095  Score=54.51  Aligned_cols=83  Identities=20%  Similarity=0.331  Sum_probs=52.1

Q ss_pred             Cccceeeccccccccccccccc-CCCcEEEeecCe----eccCCCcccccccceeeccc--CcceeeeEEEEeeeccCCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGV----PIQNESMSASESHAVYSTEE--GTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~----~l~~~s~~~~~~~~~~~~~~--g~~~~~s~L~I~nvs~sD~  332 (767)
                      .+..+.+.+|+.++|.|.+.+. +.+.+.|+++..    .+.....  .....+.....  ........|.|.++..+|.
T Consensus        14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds   91 (136)
T 2d9c_A           14 PEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKE--GHFPRVTTVSELTKRNNLDFSISISNITPADA   91 (136)
T ss_dssp             CCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSS--CCCSSBCCSSCSSSSSCCBCCEEESSCCTTTC
T ss_pred             cCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCC--CcccceeeeeeeccCCCCEEEEEECCCCHHHC
Confidence            3446788899999999998775 567899998642    1111000  00001111100  0112256899999999999


Q ss_pred             CceeEeeccCCC
Q psy12044        333 GTFVCVAENQAG  344 (767)
Q Consensus       333 GtY~CvA~N~~G  344 (767)
                      |.|.|.+.+..+
T Consensus        92 G~Y~C~~~~~~~  103 (136)
T 2d9c_A           92 GTYYCVKFRKGS  103 (136)
T ss_dssp             EEEEEEEEECCS
T ss_pred             EEEEEEEEeCCC
Confidence            999999987543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=96.33  E-value=0.0019  Score=65.06  Aligned_cols=94  Identities=13%  Similarity=0.244  Sum_probs=59.1

Q ss_pred             ceeecccccccccccccccCCCc-----EEEeecCeeccCCC-cc-ccccc------ceeecccCcceeeeEEEEeeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAK-----ITWLFDGVPIQNES-MS-ASESH------AVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~-----itW~~~g~~l~~~s-~~-~~~~~------~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      ...+..|+.+.|.|.+.+.|.+.     +.|.++........ .. .....      ...+...........|.|.++..
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~   91 (248)
T 3pv7_A           12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQL   91 (248)
T ss_dssp             EEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCG
T ss_pred             CeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCH
Confidence            45678999999999998888776     99998532211000 00 00000      00000011122345699999999


Q ss_pred             CCCCceeEeeccCCCCcccceEEEEEe
Q psy12044        330 DDNGTFVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       330 sD~GtY~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      .|.|.|.|.+.+..+.....+.+.|..
T Consensus        92 ~D~G~Y~C~~~~~~~~~~~~~~L~V~~  118 (248)
T 3pv7_A           92 EEAGEYRCEVVVTPLKAQGTVQLEVVA  118 (248)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             HHCeEEEEEEEeCCccceeEEEEEEec
Confidence            999999999999877666666666554

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=96.33  E-value=0.004  Score=63.94  Aligned_cols=85  Identities=21%  Similarity=0.415  Sum_probs=57.2

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      .....+..|..+.|.|.+.+.|.+.+.|.+++..+.....     ..+...      ....|.|.++...|.|.|.|.+.
T Consensus       105 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-----~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~  173 (291)
T 2wim_A          105 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD-----NRFAML------ANNNLQILNINKSDEGIYRCEGR  173 (291)
T ss_dssp             CCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCC-----SSEEEC------TTSCEEETTCCGGGCEEEEEEEE
T ss_pred             CCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCC-----ceEEEc------cCCCEEEEecchhhCEEEEEEEE
Confidence            3345678999999999999999999999998765542111     001111      12469999999999999999999


Q ss_pred             cCCCCcccceEEEEEe
Q psy12044        341 NQAGSTSSNYTIRIVL  356 (767)
Q Consensus       341 N~~G~s~~s~sL~V~~  356 (767)
                      |..+.......+.+.+
T Consensus       174 n~~~~~~~~~~~~~~v  189 (291)
T 2wim_A          174 VEARGEIDFRDIIVIV  189 (291)
T ss_dssp             ETTTTEEEEEEEEEEE
T ss_pred             ECCCCeeEEeeEEEEe
Confidence            9876544433344443

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=96.33  E-value=0.0045  Score=60.55  Aligned_cols=91  Identities=14%  Similarity=0.158  Sum_probs=56.9

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--eec---cC-CCc-ccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPI---QN-ESM-SASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l---~~-~s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +....+.+|+.+.|.|.+.+.+.+.+.|++..  ...   .. ... .......+...   .......|.|.++..+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~D~G   84 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGS---GSGRDSSFTISSLESEDIG   84 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGGCS
T ss_pred             CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEe---ccCCEEEEEECCCCcccCE
Confidence            34567889999999999999999999998732  111   00 000 00000111111   1123458999999999999


Q ss_pred             ceeEeeccCCCCcc-cceEEEE
Q psy12044        334 TFVCVAENQAGSTS-SNYTIRI  354 (767)
Q Consensus       334 tY~CvA~N~~G~s~-~s~sL~V  354 (767)
                      .|.|.+.+..+... ....+.|
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           85 SYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             EEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEecccCCceEEcCCceEEE
Confidence            99999998764322 2344444

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=96.33  E-value=0.0023  Score=67.98  Aligned_cols=92  Identities=14%  Similarity=0.246  Sum_probs=62.5

Q ss_pred             ccceeecccccccccccccccCC-----------CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeecc
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPE-----------AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~-----------p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      ...+.+.+|+.+.|.|.+.+.|.           +.+.|++++............     ............|.|.++..
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~   88 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFR-----LPENRISKEKDVLWFRPTLL   88 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCC-----CGGGCEEEETTEEEESSCCG
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCccccccccc-----ccCceEeecCCEEEEccCCh
Confidence            34567889999999999997664           999999976321100000000     00011112245799999999


Q ss_pred             CCCCceeEeeccCCCCcccceEEEEEee
Q psy12044        330 DDNGTFVCVAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       330 sD~GtY~CvA~N~~G~s~~s~sL~V~~~  357 (767)
                      .|.|.|.|.+.|..|.....+.+.|...
T Consensus        89 ~D~G~Y~C~a~n~~~~~~~~~~l~V~~~  116 (349)
T 4dep_C           89 NDTGNYTCMLRNTTYCSKVAFPLEVVQK  116 (349)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             hhCEEEEEEEecCCceEEEEEEEEEecC
Confidence            9999999999999888777777776653

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=96.33  E-value=0.001  Score=65.22  Aligned_cols=78  Identities=17%  Similarity=0.358  Sum_probs=55.0

Q ss_pred             ecccccccccccccccC-C-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        266 IQEGKNVSLLCKVSAIP-E-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~P-~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      +..|..+.|.|.+.+.+ . +.+.|.+++..+......   .. ... ..+.....+.|.|..+..+|.|.|+|.|.|..
T Consensus       126 ~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~---~~-~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  200 (213)
T 3mj8_L          126 ELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKT---TQ-PSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGG  200 (213)
T ss_dssp             HHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE---CC-CEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETT
T ss_pred             cccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCccc---CC-cCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECC
Confidence            34789999999999863 3 499999998877542111   00 011 23334455779999999999999999999987


Q ss_pred             CCccc
Q psy12044        344 GSTSS  348 (767)
Q Consensus       344 G~s~~  348 (767)
                      +....
T Consensus       201 ~~~~~  205 (213)
T 3mj8_L          201 NTVEK  205 (213)
T ss_dssp             EEEEE
T ss_pred             ccEEe
Confidence            65443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=96.32  E-value=0.0027  Score=68.07  Aligned_cols=94  Identities=9%  Similarity=0.073  Sum_probs=62.0

Q ss_pred             cceeecccccccccccccc-----cCCCcEEEeecCeeccCCCcccc-cccceeeccc--C-----cceeeeEEEEeeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSA-----IPEAKITWLFDGVPIQNESMSAS-ESHAVYSTEE--G-----TEIKKSELLIYNSN  328 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g-----~P~p~itW~~~g~~l~~~s~~~~-~~~~~~~~~~--g-----~~~~~s~L~I~nvs  328 (767)
                      ....+.+|..+.|.|.+.+     .|.+.+.|.+++..+........ ....+.....  .     .......|.|.++.
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  263 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL  263 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBC
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCC
Confidence            3456778999999998877     78899999998766543111000 0000111000  0     01113489999999


Q ss_pred             cCCCCceeEeeccC--CCCcccceEEEEE
Q psy12044        329 IDDNGTFVCVAENQ--AGSTSSNYTIRIV  355 (767)
Q Consensus       329 ~sD~GtY~CvA~N~--~G~s~~s~sL~V~  355 (767)
                      ..|.|.|.|.|.|.  .|.....+.+.|.
T Consensus       264 ~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          264 PQYAGSGNLTLALEAKTGKLHQEVNLVVM  292 (363)
T ss_dssp             GGGCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred             cCcCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence            99999999999999  8877666666554

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=96.30  E-value=0.0044  Score=55.26  Aligned_cols=92  Identities=21%  Similarity=0.302  Sum_probs=52.2

Q ss_pred             ceeeccccccccccccccc----CCCcEEEeecCee------ccCC---Ccc----cccccceeecccCcceeeeEEEEe
Q psy12044        263 YLEIQEGKNVSLLCKVSAI----PEAKITWLFDGVP------IQNE---SMS----ASESHAVYSTEEGTEIKKSELLIY  325 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~----P~p~itW~~~g~~------l~~~---s~~----~~~~~~~~~~~~g~~~~~s~L~I~  325 (767)
                      .+.+..|+.+.|.|.....    ..+.+.|.+....      +...   ...    .....++.+... .......|.|.
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~   86 (124)
T 1neu_A            8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGD-PSWKDGSIVIH   86 (124)
T ss_dssp             EEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCB-GGGTBCCEEEC
T ss_pred             eEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecC-CcCCeEEEEEc
Confidence            4677899999999997543    4678999984320      1000   000    000111111111 12234689999


Q ss_pred             eeccCCCCceeEeeccCCCCc--ccceEEEEE
Q psy12044        326 NSNIDDNGTFVCVAENQAGST--SSNYTIRIV  355 (767)
Q Consensus       326 nvs~sD~GtY~CvA~N~~G~s--~~s~sL~V~  355 (767)
                      ++..+|.|.|.|.+.+..+..  ...+.|.|.
T Consensus        87 ~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~  118 (124)
T 1neu_A           87 NLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (124)
T ss_dssp             SCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             cCChhhCEEEEEEEEcCCCCcCcEeeEEEEEe
Confidence            999999999999999877653  333444443

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=96.29  E-value=0.0042  Score=54.92  Aligned_cols=80  Identities=18%  Similarity=0.249  Sum_probs=51.8

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecC--e---eccC-CCccccc-ccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQN-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      .+..+.+.+|+.++|.|.+.+.+.+.+.|++..  .   .+.. ....... ..++....   ......|.|.++..+|.
T Consensus        10 ~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~v~~~Ds   86 (111)
T 1i3g_L           10 SHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSG---SGTDFTLTISNVQSEDL   86 (111)
T ss_dssp             SCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGC
T ss_pred             eCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc---CCCEEEEEECCCCHHHC
Confidence            344577889999999999988878889998843  1   1111 0000000 11111110   12345799999999999


Q ss_pred             CceeEeeccC
Q psy12044        333 GTFVCVAENQ  342 (767)
Q Consensus       333 GtY~CvA~N~  342 (767)
                      |.|.|.+.+.
T Consensus        87 G~Y~C~~~~~   96 (111)
T 1i3g_L           87 ADYFCQQYSS   96 (111)
T ss_dssp             SEEEEEECSS
T ss_pred             EEEEEEEecC
Confidence            9999999865

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=96.28  E-value=0.0021  Score=56.78  Aligned_cols=62  Identities=24%  Similarity=0.369  Sum_probs=44.7

Q ss_pred             eecccccccccccccccCCC-----cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        265 EIQEGKNVSLLCKVSAIPEA-----KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p-----~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .+.+|+.++|.|.+...+..     .+.|.+++..+..                  ......|.|.++...|.|.|.|.+
T Consensus        18 ~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~------------------~~~~~~l~i~~v~~~dsG~Y~C~~   79 (108)
T 4hwn_A           18 EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS------------------RGLSSEFQIPTASEDHSGSYWCEA   79 (108)
T ss_dssp             SCBTTCCEEEEEEC---------CCEEEEEETTEEEEE------------------EESCCEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC------------------CCcccEEEeCccCcccCeEEEEEE
Confidence            46689999999998765544     4899998876531                  012357899999999999999999


Q ss_pred             ccCCC
Q psy12044        340 ENQAG  344 (767)
Q Consensus       340 ~N~~G  344 (767)
                      .+..+
T Consensus        80 ~~~~~   84 (108)
T 4hwn_A           80 ATEDN   84 (108)
T ss_dssp             ECTTS
T ss_pred             EeCCC
Confidence            98754

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=96.27  E-value=0.0041  Score=63.18  Aligned_cols=97  Identities=16%  Similarity=0.250  Sum_probs=59.2

Q ss_pred             CCccceeeccccccccccccc---ccCCCcEEEeecCeeccCCCcc----------ccc-ccceeecccCcceeeeEEEE
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVS---AIPEAKITWLFDGVPIQNESMS----------ASE-SHAVYSTEEGTEIKKSELLI  324 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~---g~P~p~itW~~~g~~l~~~s~~----------~~~-~~~~~~~~~g~~~~~s~L~I  324 (767)
                      ..+..+.+.+|+.+.|.|.+.   +.+.+.+.|.+.+.........          ... .....+. .........|.|
T Consensus        10 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~L~I   88 (268)
T 3mj6_A           10 VSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLV-GDTFHNDGSLLL   88 (268)
T ss_dssp             --CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEEC-SCTTTTBCCEEE
T ss_pred             cCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEe-ecCCCCEEEEEE
Confidence            344457788999999999988   6778889999954322111000          000 0011111 111223467999


Q ss_pred             eeeccCCCCceeEeeccCCCCcccceEEEEEe
Q psy12044        325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       325 ~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      .++..+|.|.|.|.+.+..+.......+.+.+
T Consensus        89 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V  120 (268)
T 3mj6_A           89 QDVQKADEGIYTCEIRLKNESMVMKKPVELWV  120 (268)
T ss_dssp             CSCCGGGCEEEEEEEEETTCCCEEEEEEEEEE
T ss_pred             CCCCHhHCEEEEEEEEecCCcceEEEEEEEEE
Confidence            99999999999999998766554434444433

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=96.26  E-value=0.0054  Score=56.00  Aligned_cols=96  Identities=19%  Similarity=0.277  Sum_probs=58.5

Q ss_pred             ccceeecccccccccccccccC-CCcEEEeec--Cee---ccC--CCccccc-ccceeecccCcceeeeEEEEeeeccCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP-EAKITWLFD--GVP---IQN--ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~~--g~~---l~~--~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      +..+.+.+|+.++|.|...+.. ...+.|++.  +..   +..  ....... ..++.... ........|.|.++..+|
T Consensus         8 P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~-~~~~~~~sL~I~~~~~~D   86 (129)
T 3rrq_A            8 PALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQ-LPNGRDFHMSVVRARRND   86 (129)
T ss_dssp             CSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEE-CTTSSEEEEEESSCCGGG
T ss_pred             CCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEE-cCCCCEEEEEECCCChhH
Confidence            3456788999999999988764 567899872  211   110  0000000 11121111 122335689999999999


Q ss_pred             CCceeEeeccCCCCc----ccceEEEEEee
Q psy12044        332 NGTFVCVAENQAGST----SSNYTIRIVLK  357 (767)
Q Consensus       332 ~GtY~CvA~N~~G~s----~~s~sL~V~~~  357 (767)
                      .|.|.|.+.+..+..    ...+.|.|..+
T Consensus        87 sg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~  116 (129)
T 3rrq_A           87 SGTYLCGAISLAPKLQIKESLRAELRVTER  116 (129)
T ss_dssp             CEEEEEEEEECGGGCEEEECCCEEEEEECC
T ss_pred             CEEEEEEEEecCCCceeeEeceEEEEEecC
Confidence            999999999876654    34466666543

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=96.26  E-value=0.0043  Score=56.31  Aligned_cols=80  Identities=16%  Similarity=0.263  Sum_probs=50.8

Q ss_pred             ccceeecccccccccccccc---cCCCcEEEeecCeeccCCCcc-----------------------cccccceeecccC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNESMS-----------------------ASESHAVYSTEEG  314 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g---~P~p~itW~~~g~~l~~~s~~-----------------------~~~~~~~~~~~~g  314 (767)
                      +..+.+..|+.++|.|....   .+.+.+.|.+.........+.                       .....++.+..  
T Consensus        11 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--   88 (135)
T 1xt5_A           11 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN--   88 (135)
T ss_dssp             CSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESC--
T ss_pred             CceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEec--
Confidence            34567889999999998753   577899999854221000000                       00001111111  


Q ss_pred             cceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        315 TEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       315 ~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                        .....|.|.++..+|.|.|.|.+.+..+
T Consensus        89 --~~~~sL~I~~v~~~D~G~Y~C~v~~~~~  116 (135)
T 1xt5_A           89 --LAAPTLRLTHVHPQDGGRYWCQVAQWSI  116 (135)
T ss_dssp             --TTSCCEEECSCCGGGCEEEEEEEECSSC
T ss_pred             --CCCCeEEECCCChhhCcEEEEEEEcCCc
Confidence              1246799999999999999999988654

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=96.26  E-value=0.0053  Score=56.48  Aligned_cols=77  Identities=18%  Similarity=0.284  Sum_probs=51.7

Q ss_pred             CccceeecccccccccccccccCCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      .+....+.+|+.++|.|.+.+.  +.+.|+++  +........   ...++.....   .....|.|.++..+|.|.|.|
T Consensus        23 ~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~---~~~r~~~~~~---~~~~~L~I~~~~~~DsG~Y~C   94 (133)
T 3khq_A           23 HPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVS---EEGRIVQTQN---GSVYTLTIQNIQYEDNGIYFC   94 (133)
T ss_dssp             ECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCC---TTTTEEEEEE---TTEEEEEECSCCGGGCEEEEE
T ss_pred             cCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEE---eCCCEEEEcC---CCEEEEEECCCChHHCEEEEE
Confidence            3456678899999999999887  89999985  221110000   0111221111   124679999999999999999


Q ss_pred             eeccCCC
Q psy12044        338 VAENQAG  344 (767)
Q Consensus       338 vA~N~~G  344 (767)
                      .+.|..|
T Consensus        95 ~a~n~~g  101 (133)
T 3khq_A           95 KQKCDSA  101 (133)
T ss_dssp             EESSCC-
T ss_pred             EEEeCCC
Confidence            9999865

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=96.25  E-value=0.0021  Score=63.00  Aligned_cols=77  Identities=17%  Similarity=0.395  Sum_probs=53.9

Q ss_pred             cccccccccccccc-cCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        267 QEGKNVSLLCKVSA-IPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       267 ~~G~~vsL~C~a~g-~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      ..|..+.|.|.+.+ .|.+ .+.|.+++..+.......   .......++.....+.|.|.++...|.|.|+|.|.|...
T Consensus       125 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~---~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  201 (213)
T 3d9a_L          125 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS---WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  201 (213)
T ss_dssp             HHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEE---ECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred             cCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeec---CCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccC
Confidence            36889999999987 5555 899999988765431100   001111223334467899999999999999999999876


Q ss_pred             Cc
Q psy12044        345 ST  346 (767)
Q Consensus       345 ~s  346 (767)
                      ..
T Consensus       202 ~~  203 (213)
T 3d9a_L          202 TS  203 (213)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=96.23  E-value=0.0069  Score=53.21  Aligned_cols=93  Identities=12%  Similarity=0.135  Sum_probs=54.8

Q ss_pred             ceeecccccccccccccccC-CCcEEEeecC--ee---ccC-CCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        263 YLEIQEGKNVSLLCKVSAIP-EAKITWLFDG--VP---IQN-ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g--~~---l~~-~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      .+.+.+|+.++|.|...... ...+.|.+..  ..   +.. .........++.... ........|.|.++..+|.|.|
T Consensus         5 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~-~~~~~~~~L~I~~~~~~DsG~Y   83 (110)
T 2q87_A            5 TVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRD-SPANLSFTVTLENLTEEDAGTY   83 (110)
T ss_dssp             EEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEE-EGGGTEEEEEESSCCGGGCEEE
T ss_pred             EEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEE-cCcCCEEEEEEccCCHHHCEEE
Confidence            45778999999999987654 3689998743  11   110 000000011111111 1122346899999999999999


Q ss_pred             eEeeccCC-C-CcccceEEEEEe
Q psy12044        336 VCVAENQA-G-STSSNYTIRIVL  356 (767)
Q Consensus       336 ~CvA~N~~-G-~s~~s~sL~V~~  356 (767)
                      .|.+.+.. | .....+.+.+.+
T Consensus        84 ~C~~~~~~~g~~~~~~~~v~v~V  106 (110)
T 2q87_A           84 WCGVDTPWLQDFHDPVVEVEVSV  106 (110)
T ss_dssp             EEEEECTTSCCBCCCSEEEEEEE
T ss_pred             EEEEecCccCccCCccEEEEEEE
Confidence            99998875 4 122344444444

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=96.23  E-value=0.0027  Score=61.85  Aligned_cols=71  Identities=17%  Similarity=0.237  Sum_probs=50.0

Q ss_pred             cccccccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCc
Q psy12044        268 EGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST  346 (767)
Q Consensus       268 ~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s  346 (767)
                      .+..+.|.|.+.+. |.+.+.|.+++..+.....       +.....   .....|.|.++..+|.|.|.|.+.|..|..
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~-------~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~   85 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDR-------VKTGVT---GEQIWLQINEPTPNDKGKYVMELFDGKTGH   85 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSS-------EEEEEE---TTEEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCCCe-------EEEEEe---CCEEEEEECCCCcccCEEEEEEEecCCcce
Confidence            45566788888775 5889999999877654321       111111   123569999999999999999999977654


Q ss_pred             cc
Q psy12044        347 SS  348 (767)
Q Consensus       347 ~~  348 (767)
                      ..
T Consensus        86 ~~   87 (212)
T 2r15_A           86 QK   87 (212)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=96.22  E-value=0.0036  Score=67.23  Aligned_cols=78  Identities=26%  Similarity=0.273  Sum_probs=61.6

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|..+.|.|.+.+.|.+.+.|.+++..+...                .......|.|.++...|.|.|.|.+.|.
T Consensus       216 ~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~----------------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  279 (382)
T 1cs6_A          216 DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK----------------WLSSEPLLHIQNVDFEDEGTYECEAENI  279 (382)
T ss_dssp             EEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC----------------CSBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             ceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE----------------EecCCcEEEEccCChhhCEEEEEEEEcC
Confidence            456778999999999999999999999976554320                0122357999999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus       280 ~g~~~~~~~l~V~~  293 (382)
T 1cs6_A          280 KGRDTYQGRIIIHA  293 (382)
T ss_dssp             TEEEEEEEEEEEEE
T ss_pred             CCeEEEEEEEEEec
Confidence            98877766666654

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=96.22  E-value=0.0049  Score=59.79  Aligned_cols=76  Identities=17%  Similarity=0.352  Sum_probs=50.2

Q ss_pred             ccccccccccccc-ccCCCcEEEeecCeeccCCCcccccccceeeccc-CcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        267 QEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEE-GTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       267 ~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~-g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      ..|..+.|.|.+. +.|.|.+.|.+++..+.....      ....... +.....   .+..+...|.|.|+|.|.|..|
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~------~~~~~~~~~~~~~~---~~~~v~~~d~g~Y~C~a~n~~~  189 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT------TVSQDPETELYAVS---SKLDFNMTTNHSFMCLIKYGHL  189 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEE------EEEECTTTCCEEEE---EEEEEETTSCEEEEEEEEETTC
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEECCEECccccc------eEEecCCCcEEEEE---EEEEEEecCCCEEEEEEecCcc
Confidence            4577889999995 999999999998877653211      0111111 111111   2344556899999999999998


Q ss_pred             CcccceE
Q psy12044        345 STSSNYT  351 (767)
Q Consensus       345 ~s~~s~s  351 (767)
                      ...+.+.
T Consensus       190 ~~s~~~~  196 (201)
T 1dr9_A          190 RVNQTFN  196 (201)
T ss_dssp             CEEEEEE
T ss_pred             eeeeEEe
Confidence            7665443

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=96.20  E-value=0.004  Score=60.14  Aligned_cols=65  Identities=15%  Similarity=0.287  Sum_probs=48.5

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+.+|+.++|.|.+.+ +.+.+.|++++..+...         ..     .......|.|.++..+|.|.|.|.|.|..
T Consensus       108 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~---------~~-----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          108 PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ---------RG-----YGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE---------EE-----ECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             CccccCCEEEEEEEcCC-CCCEEEEEECCcccccc---------cc-----CCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            35678999999999876 45689999987654320         00     01234689999999999999999998764

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=96.19  E-value=0.0041  Score=59.50  Aligned_cols=82  Identities=21%  Similarity=0.305  Sum_probs=53.3

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCee--ccCCC-ccc----ccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVP--IQNES-MSA----SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~--l~~~s-~~~----~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      .+.+.+|+.+.|.|.+.+.+.+.+.|.+++..  +.... ...    .....+.............|.|.++..+|.|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            35678899999999999999999999997642  21000 000    000011111111122245699999999999999


Q ss_pred             eEeeccCCC
Q psy12044        336 VCVAENQAG  344 (767)
Q Consensus       336 ~CvA~N~~G  344 (767)
                      .|.+.|..|
T Consensus        84 ~C~~~~~~~   92 (184)
T 2ny1_B           84 ICEVEDQKE   92 (184)
T ss_dssp             EEEETTEEE
T ss_pred             EEEEEcCCC
Confidence            999998754

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=96.19  E-value=0.0058  Score=59.09  Aligned_cols=87  Identities=11%  Similarity=0.177  Sum_probs=55.9

Q ss_pred             cceeecccccccccccccccCCC---cEEEeecCeeccCCCcc-----------cccccceeecccCcceeeeEEEEeee
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEA---KITWLFDGVPIQNESMS-----------ASESHAVYSTEEGTEIKKSELLIYNS  327 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p---~itW~~~g~~l~~~s~~-----------~~~~~~~~~~~~g~~~~~s~L~I~nv  327 (767)
                      ..+++..|+.+.|.|.+.+.+.+   .+.|.+++.........           ......+.+..........+|.|.++
T Consensus         7 ~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   86 (218)
T 4frw_A            7 DVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNA   86 (218)
T ss_dssp             SEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSC
T ss_pred             CeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeec
Confidence            35678899999999999988865   48999865433211110           00011112222222233467999999


Q ss_pred             ccCCCCceeEeeccCCCCccc
Q psy12044        328 NIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       328 s~sD~GtY~CvA~N~~G~s~~  348 (767)
                      ..+|.|.|.|.+.+..+....
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~  107 (218)
T 4frw_A           87 VQADEGEYECRVSTFPAGSFQ  107 (218)
T ss_dssp             CGGGCEEEEEEEEEETTEEEE
T ss_pred             cHHHCCceeEEEEeccCceee
Confidence            999999999999876654443

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=96.18  E-value=0.0036  Score=60.49  Aligned_cols=79  Identities=14%  Similarity=0.228  Sum_probs=54.2

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+..|+.++|.|.+.+ +.+.+.|++++..+.....           ..........|.|.++...|.|.|.|.+.|..+
T Consensus        14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-----------~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   81 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-----------KPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (188)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-----------SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccc-----------ccCCCcceeEEEeCcCCcccCeEEEEEecCCCC
Confidence            5778999999999875 3468999998866532100           000122356799999999999999999988655


Q ss_pred             Ccc--cceEEEEE
Q psy12044        345 STS--SNYTIRIV  355 (767)
Q Consensus       345 ~s~--~s~sL~V~  355 (767)
                      ...  ..+.+.|.
T Consensus        82 ~~~~s~~~~l~V~   94 (188)
T 1oll_A           82 WSEPSNLLDLVVT   94 (188)
T ss_dssp             ECCCCCCEEEEEE
T ss_pred             CCCCCCceEEEec
Confidence            433  33444443

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=96.18  E-value=0.0024  Score=62.60  Aligned_cols=75  Identities=13%  Similarity=0.334  Sum_probs=52.6

Q ss_pred             cccccccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        267 QEGKNVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       267 ~~G~~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      ..|..+.|.|.+.+.+.+  .+.|.+++..+......    .......++.....+.|.|......|.|.|+|.+.|...
T Consensus       128 ~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~----~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          128 LSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMET----TQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH  203 (212)
T ss_dssp             HTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE----CCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             ccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeec----CCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence            468899999999886543  89999998876543110    001112233444567899999999999999999998765


Q ss_pred             C
Q psy12044        345 S  345 (767)
Q Consensus       345 ~  345 (767)
                      .
T Consensus       204 ~  204 (212)
T 1q0x_L          204 S  204 (212)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=96.18  E-value=0.0039  Score=60.55  Aligned_cols=92  Identities=13%  Similarity=0.212  Sum_probs=56.0

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCccccc--ccceee----cccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASE--SHAVYS----TEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~--~~~~~~----~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      ..+.+|+.+.|.|...+.+.+.+.|+++........+....  ......    .........+.|.|.++...|.|.|.|
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C   88 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (208)
T ss_dssp             SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEE
Confidence            46778999999999888899999998754322211110000  000000    000001123469999999999999999


Q ss_pred             eeccCC-CCcccceEEEEE
Q psy12044        338 VAENQA-GSTSSNYTIRIV  355 (767)
Q Consensus       338 vA~N~~-G~s~~s~sL~V~  355 (767)
                      .+.+.. +.....+.+.|.
T Consensus        89 ~~~~~~~~~~~~~~~l~V~  107 (208)
T 3r4d_A           89 DMTDENYRRTQATVRFHVH  107 (208)
T ss_dssp             EEECSSCEEEEEEEEEEEE
T ss_pred             EEEcccCceeEEEEEEEec
Confidence            999985 333444455544

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=96.17  E-value=0.0039  Score=63.49  Aligned_cols=85  Identities=19%  Similarity=0.304  Sum_probs=47.4

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeec--Cee---ccCCC------ccccccc-ceeecccCcceeeeEEEEee
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVP---IQNES------MSASESH-AVYSTEEGTEIKKSELLIYN  326 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~---l~~~s------~~~~~~~-~~~~~~~g~~~~~s~L~I~n  326 (767)
                      ..+..+.+.+|+.++|.|.+.+.+.+.+.|++.  +..   +....      ....... .... ..........|.|.+
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~L~I~~   85 (259)
T 3omz_A            7 GRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYD-TYGSTRKNLRMILRN   85 (259)
T ss_dssp             ----CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEE-EECC--CCCEEEESS
T ss_pred             cCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeE-eecCCCCeEEEEECC
Confidence            344567788999999999999999999999872  211   10000      0000000 0000 001122345799999


Q ss_pred             eccCCCCceeEeeccCCC
Q psy12044        327 SNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       327 vs~sD~GtY~CvA~N~~G  344 (767)
                      +..+|.|.|.|.+.+..+
T Consensus        86 v~~~DsG~Y~C~~~~~~~  103 (259)
T 3omz_A           86 LIENDSGVYYCATWDQNY  103 (259)
T ss_dssp             CCGGGCEEEEEEEECTTS
T ss_pred             CCcccCEEEEEEEeeCCc
Confidence            999999999999998765

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=96.17  E-value=0.0047  Score=64.98  Aligned_cols=77  Identities=23%  Similarity=0.368  Sum_probs=49.8

Q ss_pred             ecccccccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        266 IQEGKNVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      +.+|..+.|.|.+.+.+.+  .+.|.+++..+.....     .......++.....+.|.|..+..+|.|.|+|.|.|..
T Consensus       232 ~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~-----~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~  306 (327)
T 2wng_A          232 VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETA-----STVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDG  306 (327)
T ss_dssp             CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEEC-----CSCEECTTSCEEEEEEEEC-------CCEEEEEEEETT
T ss_pred             cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCccc-----CceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCC
Confidence            5689999999999996544  7999999887654211     11122233444455678899999999999999999998


Q ss_pred             CCcc
Q psy12044        344 GSTS  347 (767)
Q Consensus       344 G~s~  347 (767)
                      |...
T Consensus       307 ~~~~  310 (327)
T 2wng_A          307 QPAV  310 (327)
T ss_dssp             CCCE
T ss_pred             CCCc
Confidence            8653

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=96.17  E-value=0.004  Score=62.35  Aligned_cols=82  Identities=17%  Similarity=0.266  Sum_probs=54.8

Q ss_pred             ccceeecccccccccccccc---cCCCcEEEeecCeeccCCCcc-----------------------cccccceeecccC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSA---IPEAKITWLFDGVPIQNESMS-----------------------ASESHAVYSTEEG  314 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g---~P~p~itW~~~g~~l~~~s~~-----------------------~~~~~~~~~~~~g  314 (767)
                      ...+.+.+|+.+.|.|.+.+   .+.+.+.|.+++.......+.                       .....+..+..  
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--   86 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN--   86 (250)
T ss_dssp             CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC--
T ss_pred             CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc--
Confidence            34567889999999999987   788999999965332000000                       00000011111  


Q ss_pred             cceeeeEEEEeeeccCCCCceeEeeccCCCCc
Q psy12044        315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGST  346 (767)
Q Consensus       315 ~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s  346 (767)
                        .....|.|.++..+|.|.|.|.+.+..+..
T Consensus        87 --~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~  116 (250)
T 2fbo_J           87 --LAAPTLRLTHVHPQDGGRYWCQVAQWSIRT  116 (250)
T ss_dssp             --TTSCCEEECSCCGGGCEEEEEEEECTTCCS
T ss_pred             --CCcceEEEeeCChhhCeEEEEEeccCccCC
Confidence              123579999999999999999999987764

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=96.15  E-value=0.0068  Score=69.17  Aligned_cols=81  Identities=14%  Similarity=0.231  Sum_probs=58.3

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      .+++.+|+.++|.|.+.+.+...+.|++++..+.......           ...+...+|.|.++..+|.|.|.|.+.|.
T Consensus        57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~-----------~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~  125 (527)
T 3qs9_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD-----------LQNRGVVSMVILKMTETQAGEYLLFIQSE  125 (527)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC----------------CEEEEEESSCCSSSCSEEEEEEEC-
T ss_pred             eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccC-----------CCcceEEEEEECcCChhhCeeEEEEEEec
Confidence            6789999999999999999999999999877553222110           01122346999999999999999999998


Q ss_pred             CCCcccceEEEE
Q psy12044        343 AGSTSSNYTIRI  354 (767)
Q Consensus       343 ~G~s~~s~sL~V  354 (767)
                      .|.....+.+.+
T Consensus       126 ~~~~~~~~~v~v  137 (527)
T 3qs9_E          126 ATNYTILFTVSI  137 (527)
T ss_dssp             -CEEEEEEEEEE
T ss_pred             cccEEEEEEEEE
Confidence            876655444433

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=96.15  E-value=0.0027  Score=61.74  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC-
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA-  343 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~-  343 (767)
                      .+.+|+.++|.|.+.+.+. .+.|++++..+......    .       ........|.|.++...|.|.|.|.+.|.. 
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~----~-------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~   82 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRI----P-------QELVKKGQFPIPSITWEHTGRYRCYYGSDTA   82 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTS----C-------HHHHTTTEEEESSCCGGGCEEEEEEEEETTT
T ss_pred             cccCCCcEEEEEEecCCCc-EEEEEECCccccccccc----c-------ccCCcccEEEECCCCHHHCeEEEEEEECCCC
Confidence            6779999999999998876 79999987655311000    0       001123579999999999999999999987 


Q ss_pred             CC--cccceEEEEEe
Q psy12044        344 GS--TSSNYTIRIVL  356 (767)
Q Consensus       344 G~--s~~s~sL~V~~  356 (767)
                      |.  ....+.+.|..
T Consensus        83 g~~~~s~~~~l~V~~   97 (198)
T 1ugn_A           83 GRSESSDPLELVVTG   97 (198)
T ss_dssp             EECCCCCCEEEEEEC
T ss_pred             CcccCCccEEEEEcc
Confidence            52  23345555543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=96.14  E-value=0.007  Score=58.84  Aligned_cols=86  Identities=15%  Similarity=0.267  Sum_probs=54.1

Q ss_pred             ceeecccccccccccccccCCCc---EEEeecCeeccCCC-------c--ccccccceeec----ccCcceeeeEEEEee
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAK---ITWLFDGVPIQNES-------M--SASESHAVYST----EEGTEIKKSELLIYN  326 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~---itW~~~g~~l~~~s-------~--~~~~~~~~~~~----~~g~~~~~s~L~I~n  326 (767)
                      .+.+..|+.+.|.|.+.+.+.+.   +.|.+++.......       .  .........+.    .........+|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            35678899999999998877664   78998653321100       0  00000001111    111223356799999


Q ss_pred             eccCCCCceeEeeccCCCCccc
Q psy12044        327 SNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       327 vs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      +..+|.|.|.|.+.+..+....
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~~  111 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTRR  111 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEE
T ss_pred             CCHHHCcceEEEEEeCCCccee
Confidence            9999999999999987765544

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=96.14  E-value=0.0078  Score=58.80  Aligned_cols=92  Identities=21%  Similarity=0.255  Sum_probs=57.9

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--eecc---C-CCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQ---N-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l~---~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.+.|.|.+.+.+.+.+.|+++.  ....   . ....... ...+....   ......|.|.++..+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G   84 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG---SGTDFTLSINSVETEDFG   84 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred             CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc---CCCEEEEEECCCChhhCE
Confidence            34567889999999999999999999998742  2110   0 0000000 01111111   112458999999999999


Q ss_pred             ceeEeeccCCCCccc-ceEEEEE
Q psy12044        334 TFVCVAENQAGSTSS-NYTIRIV  355 (767)
Q Consensus       334 tY~CvA~N~~G~s~~-s~sL~V~  355 (767)
                      .|.|.+.|..+.... ...+.|.
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~  107 (213)
T 3d9a_L           85 MYFCQQSNSWPYTFGGGTKLEIK  107 (213)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEeeecCCcceeCCCEEEEEe
Confidence            999999998775433 2345443

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=96.14  E-value=0.0022  Score=63.26  Aligned_cols=75  Identities=23%  Similarity=0.305  Sum_probs=49.8

Q ss_pred             eecccccccccccccc-cCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        265 EIQEGKNVSLLCKVSA-IPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g-~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      .+..|..+.|.|.+.+ .|.| .+.|.+++..+......    . .  ...+.....+.|.| .....|.|.|+|.|.|.
T Consensus       135 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~----~-~--~~~~~~~~~s~L~i-~~~~~d~g~Y~C~a~n~  206 (219)
T 1c1e_H          135 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFP----A-V--LQSDLYTLSSSVTV-PSSPRPSETVTCNVAHP  206 (219)
T ss_dssp             SSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC----C-E--ESSSCEEEEEEEEE-ESSSTTTSCCEEEEEEG
T ss_pred             ccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecC----C-c--ccCCeEEEEEEEEE-ecccCCCCEEEEEEEeC
Confidence            3457899999999998 8998 99999987654211100    0 0  01133334567888 44444669999999998


Q ss_pred             CCCcc
Q psy12044        343 AGSTS  347 (767)
Q Consensus       343 ~G~s~  347 (767)
                      .|...
T Consensus       207 ~~~~~  211 (219)
T 1c1e_H          207 ASSTK  211 (219)
T ss_dssp             GGTEE
T ss_pred             CCCcc
Confidence            77543

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=96.13  E-value=0.0079  Score=53.28  Aligned_cols=84  Identities=18%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             cceeeccccccccccccccc--CCCcEEEeecC-------eecc--CCC-cccccccceeecccCcceeeeEEEEeeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAI--PEAKITWLFDG-------VPIQ--NES-MSASESHAVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~--P~p~itW~~~g-------~~l~--~~s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      ..+.+..|+.++|.|.....  ....+.|.+..       ..+.  ... ........+.+ ..........|.|.++..
T Consensus         5 ~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~-~~~~~~~~~sL~I~~v~~   83 (115)
T 2or7_A            5 TAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQL-KGNISEGNVSLTIENTVV   83 (115)
T ss_dssp             -CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEEC-CSCGGGTBCCEEESSCCG
T ss_pred             cEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEE-ecCccCCeEEEEEccCCH
Confidence            34678899999999998653  35689999864       1111  000 00000111111 111223456899999999


Q ss_pred             CCCCceeEeeccCCCCc
Q psy12044        330 DDNGTFVCVAENQAGST  346 (767)
Q Consensus       330 sD~GtY~CvA~N~~G~s  346 (767)
                      +|.|.|.|.+.+.....
T Consensus        84 ~DsG~Y~C~v~~~~~~~  100 (115)
T 2or7_A           84 GDGGPYCCVVEIPGAFH  100 (115)
T ss_dssp             GGCEEEEEEECCTTSCE
T ss_pred             HHCEEEEEEEECCCcee
Confidence            99999999998764433

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=96.13  E-value=0.0093  Score=58.23  Aligned_cols=88  Identities=10%  Similarity=0.192  Sum_probs=56.4

Q ss_pred             ceeecccccccccccccccCCCcEEEeec--Ceecc---C-CCcccc-cccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQ---N-ESMSAS-ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~---~-~s~~~~-~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      ...+.+|+.+.|.|.+.  +.+.+.|.++  +....   . ...... ....+....   ......|.|.++..+|.|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y   83 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK---SGNTASLTVSGLQTDDEAVY   83 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE---ETTEEEEEEESCCGGGCEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc---cCCEEEEEECCCChhHCEEE
Confidence            67788999999999998  8899999983  22111   0 000000 001111111   22346799999999999999


Q ss_pred             eEeeccCCC--CcccceEEEEE
Q psy12044        336 VCVAENQAG--STSSNYTIRIV  355 (767)
Q Consensus       336 ~CvA~N~~G--~s~~s~sL~V~  355 (767)
                      .|.+.+..|  .......+.|.
T Consensus        84 ~C~~~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           84 YCGSLVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             EEEEEETTTEEEECCCEEEEEC
T ss_pred             EEEEecCCCceeECCCceEEEe
Confidence            999999877  33344555554

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=96.13  E-value=0.0054  Score=61.70  Aligned_cols=91  Identities=19%  Similarity=0.228  Sum_probs=53.6

Q ss_pred             ecccccccccccccc-cCCC-cEEEeecCeeccCCCcccccc--cceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        266 IQEGKNVSLLCKVSA-IPEA-KITWLFDGVPIQNESMSASES--HAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       266 v~~G~~vsL~C~a~g-~P~p-~itW~~~g~~l~~~s~~~~~~--~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...|..+.|.|.+.+ .|.+ .+.|.+++..+..........  ........+.....+.|.+......|.|.|+|.+.|
T Consensus       130 ~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n  209 (248)
T 3pv7_A          130 GMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRH  209 (248)
T ss_dssp             ------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEEC
T ss_pred             cccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEEC
Confidence            345677889999998 7888 999999886543221111110  011222334445567788888888899999999999


Q ss_pred             CCCCcccceEEEEEe
Q psy12044        342 QAGSTSSNYTIRIVL  356 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~  356 (767)
                      ..+.......+.+.+
T Consensus       210 ~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          210 ASLHTPLRSNFTLTA  224 (248)
T ss_dssp             TTCSSCEEEEECC--
T ss_pred             CCCCCCcEEEEEEEE
Confidence            988755544444433

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=96.12  E-value=0.0033  Score=61.54  Aligned_cols=77  Identities=14%  Similarity=0.361  Sum_probs=53.2

Q ss_pred             ccccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        267 QEGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       267 ~~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      ..|..+.|.|.+.+. |.+ .+.|.+++..+.......   .......++.....+.|.|..+..+|.|.|+|.|.|...
T Consensus       124 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~---~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          124 LATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDS---VTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS  200 (210)
T ss_dssp             HTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEE---ECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             ccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEc---cCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence            468899999999874 443 899999988765431000   001111233344567899999999999999999999866


Q ss_pred             Cc
Q psy12044        345 ST  346 (767)
Q Consensus       345 ~s  346 (767)
                      ..
T Consensus       201 ~~  202 (210)
T 1lk3_L          201 SS  202 (210)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=96.11  E-value=0.0031  Score=65.75  Aligned_cols=82  Identities=16%  Similarity=0.279  Sum_probs=58.4

Q ss_pred             ceeecccccccccccccccC-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      .+.+.+|+.+.|.|.+.+.+ .+.+.|.+++........   ...       ......+.|.|.++...|.|.|.|.+.|
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~---~~~-------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE---QAS-------RIHQHKEKLWFVPAKVEDSGHYYCVVRN   83 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCC---TTS-------SSEECSSBEECTTCCGGGCSCCEECCCS
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccc---cCC-------cEeccCCeEEECCCChhhCEEEEEEEeC
Confidence            45778999999999999988 889999998753211100   000       0111234799999999999999999999


Q ss_pred             CCCCcccceEEEE
Q psy12044        342 QAGSTSSNYTIRI  354 (767)
Q Consensus       342 ~~G~s~~s~sL~V  354 (767)
                      ..|.....+.+.+
T Consensus        84 ~~g~~~~~~~v~v   96 (315)
T 1itb_B           84 SSYCLRIKISAKF   96 (315)
T ss_dssp             SSCCCCEECCCEE
T ss_pred             CceEEEEEEEEEE
Confidence            9887665554443

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=96.11  E-value=0.0031  Score=56.80  Aligned_cols=79  Identities=20%  Similarity=0.257  Sum_probs=51.6

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--e---ecc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|++..  .   .+. ........ ..++...   .......|.|.++..+|.|
T Consensus        10 p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~---~~~~~~~L~I~~v~~~DsG   86 (119)
T 2e27_L           10 PSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGS---GSGRDYSFSISNLEPEDAA   86 (119)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEECSCCGGGCE
T ss_pred             CCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEE---ccCCEEEEEECCCChHHCE
Confidence            34567889999999999998888899999842  1   111 10000000 1111111   1123457999999999999


Q ss_pred             ceeEeeccC
Q psy12044        334 TFVCVAENQ  342 (767)
Q Consensus       334 tY~CvA~N~  342 (767)
                      .|.|.+.+.
T Consensus        87 ~Y~C~~~~~   95 (119)
T 2e27_L           87 TYYCLQYDN   95 (119)
T ss_dssp             EEEEEECGG
T ss_pred             EEEEEEccC
Confidence            999999874

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=96.11  E-value=0.0056  Score=55.21  Aligned_cols=87  Identities=18%  Similarity=0.320  Sum_probs=51.1

Q ss_pred             ceeecccccccccccccccCCC----cEEEeecCee-----c--c----CCCcccc--cccceeecccCcc--------e
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEA----KITWLFDGVP-----I--Q----NESMSAS--ESHAVYSTEEGTE--------I  317 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p----~itW~~~g~~-----l--~----~~s~~~~--~~~~~~~~~~g~~--------~  317 (767)
                      .+.+..|+.++|.|.....+.+    .+.|.+....     +  .    .......  ...+..+......        .
T Consensus        11 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~   90 (128)
T 3r0n_A           11 EVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAEL   90 (128)
T ss_dssp             EEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBC
T ss_pred             eEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCC
Confidence            4577889999999998876655    7899985210     0  0    0000000  1112222222111        1


Q ss_pred             eeeEEEEeeeccCCCCceeEeecc-CCCCcccc
Q psy12044        318 KKSELLIYNSNIDDNGTFVCVAEN-QAGSTSSN  349 (767)
Q Consensus       318 ~~s~L~I~nvs~sD~GtY~CvA~N-~~G~s~~s  349 (767)
                      ....|.|.++..+|.|.|.|.+.+ ..|.....
T Consensus        91 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~  123 (128)
T 3r0n_A           91 QDATLALHGLTVEDEGNYTCEFATFPKGSVRGM  123 (128)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEEETTEEEEEE
T ss_pred             CCeEEEEccCCchhCeEEEEEEEeCCCCCcccE
Confidence            245899999999999999997654 34444333

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=96.10  E-value=0.0017  Score=64.37  Aligned_cols=73  Identities=22%  Similarity=0.264  Sum_probs=52.2

Q ss_pred             eccccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        266 IQEGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      +..|..+.|.|.+.+. |.| .+.|.+++..+.....       ......+.....+.|.|..+...| |.|+|.|.|..
T Consensus       139 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~-------~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~  210 (222)
T 1q9r_B          139 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTF-------PAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPA  210 (222)
T ss_dssp             CCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEE-------EEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGG
T ss_pred             ccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEec-------cccccCCcEEEEEEEEECchhcCC-CeEEEEEEccC
Confidence            4578999999999986 888 9999998765422100       011122333445678998888889 99999999988


Q ss_pred             CCc
Q psy12044        344 GST  346 (767)
Q Consensus       344 G~s  346 (767)
                      |..
T Consensus       211 ~~~  213 (222)
T 1q9r_B          211 SST  213 (222)
T ss_dssp             GTE
T ss_pred             CCC
Confidence            764

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=96.10  E-value=0.0059  Score=54.93  Aligned_cols=80  Identities=15%  Similarity=0.223  Sum_probs=52.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--ee---cc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VP---IQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~---l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|++..  ..   +. ........ ..++...   .......|.|.++..+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~---~~~~~~~L~I~~v~~~DsG   84 (120)
T 1mqk_L            8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGS---GSGTQFSLKINSLLPEDFG   84 (120)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEe---ccCCEEEEEECCCCHHHCE
Confidence            34567889999999999998888899999842  21   11 10000000 1111111   0123467999999999999


Q ss_pred             ceeEeeccCC
Q psy12044        334 TFVCVAENQA  343 (767)
Q Consensus       334 tY~CvA~N~~  343 (767)
                      .|.|.+.+..
T Consensus        85 ~Y~C~~~~~~   94 (120)
T 1mqk_L           85 SYYCQHHYGT   94 (120)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEEEEeCC
Confidence            9999998753

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=96.02  E-value=0.0057  Score=53.57  Aligned_cols=79  Identities=15%  Similarity=0.230  Sum_probs=51.2

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--e---ecc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|.+..  .   .+. ........ ..++...   .......|.|.++..+|.|
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~DsG   84 (107)
T 1i8k_A            8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSS---GTGTDFVFTIENTLSEDVG   84 (107)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred             CCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEE---ccCCEEEEEECCCCHHHCE
Confidence            34567889999999999988888899998842  1   111 10000000 1111111   1123457999999999999


Q ss_pred             ceeEeeccC
Q psy12044        334 TFVCVAENQ  342 (767)
Q Consensus       334 tY~CvA~N~  342 (767)
                      .|.|.+.+.
T Consensus        85 ~Y~C~~~~~   93 (107)
T 1i8k_A           85 DYYCLQSFN   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEeeC
Confidence            999999875

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=96.02  E-value=0.0052  Score=69.35  Aligned_cols=82  Identities=15%  Similarity=0.308  Sum_probs=58.6

Q ss_pred             eeccccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        265 EIQEGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      .+..|..+.|.|.+.+. |.| .++|.+++..+......      ......+.....+.|.|.++...| |.|.|.|.|.
T Consensus       230 ~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~------~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~  302 (523)
T 2rcj_C          230 KSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFP------AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHK  302 (523)
T ss_pred             ccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCC------cEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeC
Confidence            45689999999999887 777 89999988654221110      011122333446789999999999 9999999999


Q ss_pred             CCCcccceEEE
Q psy12044        343 AGSTSSNYTIR  353 (767)
Q Consensus       343 ~G~s~~s~sL~  353 (767)
                      .|.......+.
T Consensus       303 ~g~~~~~~~l~  313 (523)
T 2rcj_C          303 PSNTKVDKRVE  313 (523)
T ss_pred             CCCcceEEecC
Confidence            99865544443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=96.00  E-value=0.006  Score=59.13  Aligned_cols=80  Identities=13%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             eeeccccccccccccc----ccCCCcEEEeecCeeccCCCccc-----ccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        264 LEIQEGKNVSLLCKVS----AIPEAKITWLFDGVPIQNESMSA-----SESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~----g~P~p~itW~~~g~~l~~~s~~~-----~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      +.+..|+.+.|.|.+.    +.+.+.+.|.+++..+.......     ....+..+.    ......|.|.++..+|.|.
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~----~~~~~~L~I~~v~~~D~G~   79 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD----ITNNLSIVILALRPSDEGT   79 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE----STTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc----cCCCcEEEEecccchhCeE
Confidence            5677899999999985    45678999999876553111000     000001110    1124579999999999999


Q ss_pred             eeEeeccCCCCcc
Q psy12044        335 FVCVAENQAGSTS  347 (767)
Q Consensus       335 Y~CvA~N~~G~s~  347 (767)
                      |.|.+.|..|...
T Consensus        80 Y~C~~~~~~g~~~   92 (201)
T 1dr9_A           80 YECVVLKYEKDAF   92 (201)
T ss_dssp             EEEEEEECCTTSC
T ss_pred             EEEEEEcCCCCcc
Confidence            9999999887654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=95.99  E-value=0.011  Score=57.73  Aligned_cols=92  Identities=17%  Similarity=0.225  Sum_probs=57.8

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--Ceec---cC-CCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPI---QN-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l---~~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +....+.+|+.+.|.|.+.+.+.+.+.|+++  +..+   .. ....... ...+....   ......|.|.++..+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G   83 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG---SGTDFTLTIDPVEADDTA   83 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe---cCCEEEEEECCCCHHHCe
Confidence            4456788999999999999999899999873  2211   00 0000000 01111111   112458999999999999


Q ss_pred             ceeEeeccCCCCccc-ceEEEEE
Q psy12044        334 TFVCVAENQAGSTSS-NYTIRIV  355 (767)
Q Consensus       334 tY~CvA~N~~G~s~~-s~sL~V~  355 (767)
                      .|.|.+.|..+.... ...+.|.
T Consensus        84 ~Y~C~~~~~~~~~~~~~~~l~V~  106 (210)
T 1lk3_L           84 IYFCQQSWNGPLTFGAGTKLELK  106 (210)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEEEcCCCceeCCCEEEEEc
Confidence            999999998764332 2344443

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=95.97  E-value=0.007  Score=53.95  Aligned_cols=85  Identities=19%  Similarity=0.156  Sum_probs=52.4

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCccc------------ccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA------------SESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~------------~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      ..+.+|+.+.|.|.......+.+.|.+.........+..            ....+...      ..+++|.|.+++.+|
T Consensus        10 ~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~------~~ngSL~I~nvt~~D   83 (111)
T 2qsq_A           10 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII------YPNASLLIQNIIQND   83 (111)
T ss_dssp             SEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEE------CTTSCEEECSCCGGG
T ss_pred             ceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEE------ecCCcEEEccCcccC
Confidence            467799999999975444455799987543221111100            00111111      124589999999999


Q ss_pred             CCceeEeeccCCCC-cccceEEEE
Q psy12044        332 NGTFVCVAENQAGS-TSSNYTIRI  354 (767)
Q Consensus       332 ~GtY~CvA~N~~G~-s~~s~sL~V  354 (767)
                      .|.|+|.+.+..+. ....+.+.|
T Consensus        84 ~G~Ytc~v~~~~~~~~~~~~~L~V  107 (111)
T 2qsq_A           84 AGFYTLHVIKSDLVNEEATGQFRV  107 (111)
T ss_dssp             CEEEEEEEEETTSCCEEEEEEEEE
T ss_pred             CeEEEEEEEeCCCcEEEEEEEEEE
Confidence            99999999988653 344444444

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=95.95  E-value=0.0037  Score=55.27  Aligned_cols=77  Identities=18%  Similarity=0.285  Sum_probs=49.8

Q ss_pred             ccceeeccccccccccccccc--CCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI--PEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~--P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +..+.+.+|+.++|.|.+.+.  +.+.+.|++.  +.....  ..... .++.... ........|.|.++..+|.|.|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~--~~~~~-~r~~~~~-~~~~~~~~L~I~~v~~~DsG~Y~   82 (111)
T 2ywz_A            7 PRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEK--TISIG-GRYDETV-DKGSKSFSLRISDLRVEDSGTYK   82 (111)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE--ECCSB-TTEEEEE-ETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceE--eeEeC-CCEEEEE-eCCCCEEEEEECCCChhcCEEEE
Confidence            345678899999999998765  5678999884  221100  00000 1111111 01123568999999999999999


Q ss_pred             Eeecc
Q psy12044        337 CVAEN  341 (767)
Q Consensus       337 CvA~N  341 (767)
                      |.+.+
T Consensus        83 C~~~~   87 (111)
T 2ywz_A           83 CQADY   87 (111)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99987

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=95.95  E-value=0.0049  Score=59.20  Aligned_cols=76  Identities=22%  Similarity=0.464  Sum_probs=55.3

Q ss_pred             cceeeccccccccccc-ccccCC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        262 FYLEIQEGKNVSLLCK-VSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~-a~g~P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ....+.+|+.+.|.|. +.+.|. +.+.|.+++..+.....    .. ....     ...+.|.|.++..+|.|.|.|.+
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~----~~-~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~   85 (201)
T 3s97_C           16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD----KR-RFVS-----QTNGNLYIANVEASDKGNYSCFV   85 (201)
T ss_dssp             CCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCS----SS-EEEC-----TTTCCEEESSCCGGGCEEEEEEE
T ss_pred             ceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeC----CC-eEEE-----cCCCeEEECcCCcccCeEEEEEE
Confidence            4567889999999999 889998 99999998765531110    00 1111     11356999999999999999999


Q ss_pred             ccCCCCcc
Q psy12044        340 ENQAGSTS  347 (767)
Q Consensus       340 ~N~~G~s~  347 (767)
                      .+..+...
T Consensus        86 ~~~~~~~~   93 (201)
T 3s97_C           86 SSPSITKS   93 (201)
T ss_dssp             EEGGGTEE
T ss_pred             EecCCCcc
Confidence            98765443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=95.94  E-value=0.011  Score=67.37  Aligned_cols=102  Identities=14%  Similarity=0.244  Sum_probs=68.0

Q ss_pred             CCCCCCccceeecccccccccccccccC-CCcEEEeecCeecc----CC-C-cccccccceeecccCcceeeeEEEEeee
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQ----NE-S-MSASESHAVYSTEEGTEIKKSELLIYNS  327 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g~~l~----~~-s-~~~~~~~~~~~~~~g~~~~~s~L~I~nv  327 (767)
                      |.+........+.+|+.+.|.|.+.+.+ .+.+.|++++....    .. . ........+.+...+.......|.|.++
T Consensus       113 p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v  192 (585)
T 2ocw_A          113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQL  192 (585)
T ss_pred             ccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccC
Confidence            3344445566788999999999998654 57899999764321    10 0 0000011222333333334458999999


Q ss_pred             ccCCCCceeEeeccCCCCcccceEEEEEe
Q psy12044        328 NIDDNGTFVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       328 s~sD~GtY~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      ...|.|.|.|.+.|..|.....+.+.|..
T Consensus       193 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  221 (585)
T 2ocw_A          193 RLSDAGQYLCQAGDDSNSNKKNADLQVLK  221 (585)
T ss_pred             ChhHCeEEEEEeccCCccccceEEEEEcc
Confidence            99999999999999999887777777754

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=95.94  E-value=0.0071  Score=58.76  Aligned_cols=80  Identities=15%  Similarity=0.168  Sum_probs=52.4

Q ss_pred             ccccccccc-cccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCc
Q psy12044        268 EGKNVSLLC-KVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGST  346 (767)
Q Consensus       268 ~G~~vsL~C-~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s  346 (767)
                      .+....+.| .+.+.|.+.+.|+.++........       ......+.....+.|.|..+...|.|.|+|.|.|..|..
T Consensus       135 ~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~-------~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~  207 (225)
T 4fmk_A          135 PQSVAVARCVSTGGRPPARITWISSLGGEAKDTQ-------EPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEE  207 (225)
T ss_dssp             SSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEE-------EECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSS
T ss_pred             ceeeeeeeeeecCCCCCCEEEEEECCccccCCcc-------eEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCe
Confidence            344455555 456678889999886544322111       112223334456789999999999999999999998877


Q ss_pred             ccceEEEE
Q psy12044        347 SSNYTIRI  354 (767)
Q Consensus       347 ~~s~sL~V  354 (767)
                      .....+.+
T Consensus       208 ~~~~~v~l  215 (225)
T 4fmk_A          208 PILLPVTL  215 (225)
T ss_dssp             CEEEEEEC
T ss_pred             EEEEEEEE
Confidence            65544443

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=95.94  E-value=0.0036  Score=57.25  Aligned_cols=80  Identities=16%  Similarity=0.185  Sum_probs=51.3

Q ss_pred             ccceeeccccccccccccccc--CCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI--PEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~--P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +..+.+.+|+.++|.|...+.  +.+.+.|++.  +.....  ..... .++..... .......|.|.+++.+|.|.|.
T Consensus         7 p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~--li~~~-~R~~~~~~-~~~~~~sL~I~~v~~~DsG~Y~   82 (126)
T 3moq_A            7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQ--SISIG-GRYVETVN-KGSKSFSLRISDLRVEDSGTYK   82 (126)
T ss_dssp             CSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE--ECCCB-TTEEEEEE-TTTTEEEEEECSCCGGGCEEEE
T ss_pred             CceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceE--EEEeC-CcEEEEEe-CCCCEEEEEECcCChHhCEEEE
Confidence            445678899999999998765  5678999883  221110  00000 11111111 1123568999999999999999


Q ss_pred             EeeccCCC
Q psy12044        337 CVAENQAG  344 (767)
Q Consensus       337 CvA~N~~G  344 (767)
                      |.+.+..+
T Consensus        83 C~~~~~~~   90 (126)
T 3moq_A           83 CQAFYVFF   90 (126)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEcCC
Confidence            99987654

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=95.91  E-value=0.0068  Score=60.89  Aligned_cols=82  Identities=11%  Similarity=0.285  Sum_probs=52.4

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--ee---cc-----CCC-ccccc-ccceeecccCcceeeeEEEEeeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VP---IQ-----NES-MSASE-SHAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~---l~-----~~s-~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      +..+.+.+|+.+.|.|.+.+.+.+.+.|++..  ..   +.     +.. ..... ..++.....  ......|.|.++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~   85 (246)
T 4dzb_B            8 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA--SLTLSTLTVTSAH   85 (246)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE--ETTEEEEEECSCC
T ss_pred             CcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec--CCCEEEEEECCCC
Confidence            34567889999999999999999999998721  11   10     000 00000 011111110  1234589999999


Q ss_pred             cCCCCceeEeeccCCC
Q psy12044        329 IDDNGTFVCVAENQAG  344 (767)
Q Consensus       329 ~sD~GtY~CvA~N~~G  344 (767)
                      .+|.|.|.|.+.+..+
T Consensus        86 ~~D~G~Y~C~~~~~~~  101 (246)
T 4dzb_B           86 PEDSSFYICSARTSGD  101 (246)
T ss_dssp             GGGCEEEEEEECCSSG
T ss_pred             HHHCEEEEEEEecCCC
Confidence            9999999999987643

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=95.90  E-value=0.01  Score=60.34  Aligned_cols=85  Identities=12%  Similarity=0.141  Sum_probs=54.5

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecC--eec---cCC---CcccccccceeecccCcceeeeEEEEeeeccC
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPI---QNE---SMSASESHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l---~~~---s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      ..+..+.+.+|+.++|.|.+.+.+.+.+.|++..  ...   ...   .........+.... ........|.|.++..+
T Consensus         8 q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~sL~I~~v~~~   86 (256)
T 3tf7_C            8 QPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEF-SKSDSSFHLRKASVHRS   86 (256)
T ss_dssp             CSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEE-ETTTTEEEEEESSCCGG
T ss_pred             ecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEE-cCCCCEEEEEECCCCcc
Confidence            3445678889999999999999999999998732  111   000   00000000111100 01123567999999999


Q ss_pred             CCCceeEeeccCCC
Q psy12044        331 DNGTFVCVAENQAG  344 (767)
Q Consensus       331 D~GtY~CvA~N~~G  344 (767)
                      |.|.|.|.+.|..+
T Consensus        87 DsG~Y~C~~~~~~~  100 (256)
T 3tf7_C           87 DSAVYFCAVSAKGT  100 (256)
T ss_dssp             GCSEEEEEEECTTC
T ss_pred             cCEEEEEEEecCCC
Confidence            99999999998765

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=95.89  E-value=0.012  Score=58.36  Aligned_cols=92  Identities=15%  Similarity=0.182  Sum_probs=57.6

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--eec---cC-CC-cccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPI---QN-ES-MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l---~~-~s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +....+.+|+.+.|.|.+.+.+.+.+.|++..  ...   .. .. ........+...   .......|.|.++..+|.|
T Consensus        31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~D~G  107 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS---GSGTDFTLTISSLQPEDFA  107 (237)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEE---cCCCEEEEEECCCChhhCe
Confidence            44567889999999999999999999998732  111   00 00 000000111111   1123567999999999999


Q ss_pred             ceeEeeccCCCCcc-cceEEEEE
Q psy12044        334 TFVCVAENQAGSTS-SNYTIRIV  355 (767)
Q Consensus       334 tY~CvA~N~~G~s~-~s~sL~V~  355 (767)
                      .|.|.+.+..+... ....+.|.
T Consensus       108 ~Y~C~~~~~~~~~~~~~~~l~V~  130 (237)
T 3sob_L          108 TYYCQQSYTTPPTFGQGTKVEIK  130 (237)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEE
T ss_pred             EEEEeeccCCceEEcCcEEEEEe
Confidence            99999988765322 23445443

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=95.88  E-value=0.0045  Score=61.81  Aligned_cols=82  Identities=21%  Similarity=0.206  Sum_probs=52.4

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--ee---ccCC-Cc-ccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VP---IQNE-SM-SASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~---l~~~-s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +....+.+|+.+.|.|.+.+.|.+.+.|.++.  ..   +... .. .......+.... ........|.|.++..+|.|
T Consensus       134 p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~L~I~~v~~~D~G  212 (238)
T 2p1y_A          134 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF-NKREKKLSLHIADSQPGDSA  212 (238)
T ss_dssp             CSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE-ETTTTEEEEEETTCCGGGCE
T ss_pred             CceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEe-cCCCCeEEEEEcCCCHHHCE
Confidence            34456789999999999999999999999853  11   1000 00 000000111110 01122468999999999999


Q ss_pred             ceeEeeccCC
Q psy12044        334 TFVCVAENQA  343 (767)
Q Consensus       334 tY~CvA~N~~  343 (767)
                      .|.|.+.|..
T Consensus       213 ~Y~C~a~n~~  222 (238)
T 2p1y_A          213 TYFCAAIDTN  222 (238)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEeeCC
Confidence            9999999873

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=95.88  E-value=0.0087  Score=69.35  Aligned_cols=73  Identities=32%  Similarity=0.513  Sum_probs=60.1

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|..+.|.|.+.+.|.+.+.|.+++..+..                     ...|.|.++...|.|.|.|.|.|..
T Consensus       391 ~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~---------------------~~~L~i~~~~~~d~G~Y~C~a~n~~  449 (642)
T 1e07_A          391 TYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH---------------------TQELFISNITEKNSGLYTCQANNSA  449 (642)
T ss_pred             eEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC---------------------CceEEEccCChhhCeEEEEEEEcCC
Confidence            4567899999999999999999999998866532                     1358999999999999999999999


Q ss_pred             CCcccceEEEEEee
Q psy12044        344 GSTSSNYTIRIVLK  357 (767)
Q Consensus       344 G~s~~s~sL~V~~~  357 (767)
                      |.......+.+.+.
T Consensus       450 g~~~~s~~~~v~v~  463 (642)
T 1e07_A          450 SGHSRTTVKTITVS  463 (642)
T ss_pred             CCCcccceEEEEEe
Confidence            88777655555554

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=95.88  E-value=0.014  Score=51.06  Aligned_cols=76  Identities=26%  Similarity=0.309  Sum_probs=49.5

Q ss_pred             ceeecccccccccccc-cccCCCcEEEeecC-eeccCC----Cc--cccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        263 YLEIQEGKNVSLLCKV-SAIPEAKITWLFDG-VPIQNE----SM--SASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g-~~l~~~----s~--~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      .+.+..|+.++|.|.. .+.+.+.+.|.+.. ..+...    ..  .... ..++...     .....|.|.++..+|.|
T Consensus        12 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~-----~~~~sL~I~~v~~~DsG   86 (110)
T 2ptt_A           12 DINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE-----ENNGALHISNVRKEDKG   86 (110)
T ss_dssp             SEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEEC-----TTTCCEEESSCCGGGCE
T ss_pred             CEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEe-----CCCccEEECCCCcccCe
Confidence            4677899999999998 66777899999832 211100    00  0000 0111111     13467999999999999


Q ss_pred             ceeEeeccCC
Q psy12044        334 TFVCVAENQA  343 (767)
Q Consensus       334 tY~CvA~N~~  343 (767)
                      .|.|.+.+..
T Consensus        87 ~Y~C~v~~~~   96 (110)
T 2ptt_A           87 TYYMRVLRET   96 (110)
T ss_dssp             EEEEEEESSS
T ss_pred             EEEEEEEcCC
Confidence            9999997654

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=95.88  E-value=0.0075  Score=53.82  Aligned_cols=83  Identities=19%  Similarity=0.285  Sum_probs=50.8

Q ss_pred             Cccceeeccccccccccccccc-CCCcEEEeecCee----ccCCCc-ccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVP----IQNESM-SASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~----l~~~s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      .+..+.+.+|+.++|.|.+.+. +.+.+.|+++...    +..... ........ ............|.|.++..+|.|
T Consensus        13 ~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~-~~~~~~~~~~~~L~I~~v~~~DsG   91 (120)
T 2yz1_A           13 PEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNV-SDATKRNNMDFSIRISNVTPEDAG   91 (120)
T ss_dssp             CSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSE-EECCBSSTTBCCEEECSCCGGGCE
T ss_pred             CCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccce-eeccccCCCeEEEEECCCCHHHCE
Confidence            3445778899999999998765 5678999986421    110000 00000000 000001122357999999999999


Q ss_pred             ceeEeeccCC
Q psy12044        334 TFVCVAENQA  343 (767)
Q Consensus       334 tY~CvA~N~~  343 (767)
                      .|.|.+.+..
T Consensus        92 ~Y~C~~~~~~  101 (120)
T 2yz1_A           92 TYYCVKFQKG  101 (120)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEcCC
Confidence            9999998753

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=95.87  E-value=0.0089  Score=60.06  Aligned_cols=79  Identities=15%  Similarity=0.237  Sum_probs=52.3

Q ss_pred             ceeecccccccccccccccCCCcEEEee--cCeeccCC----C-cccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQNE----S-MSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~~~----s-~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      ...+.+|+.++|.|.+.+.+.+.+.|++  ++..+...    . ........+....   ......|.|.++..+|.|.|
T Consensus       144 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y  220 (247)
T 2ghw_B          144 TLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSG---SGTDFTLTISRLEPEDFAVY  220 (247)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEC---SSSEEEEEECSCCGGGCEEE
T ss_pred             EEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEec---CCCeEEEEECcCCHHHCEEE
Confidence            4567899999999999999999999998  44322100    0 0000001111110   12346799999999999999


Q ss_pred             eEeeccCCC
Q psy12044        336 VCVAENQAG  344 (767)
Q Consensus       336 ~CvA~N~~G  344 (767)
                      .|.+.|..+
T Consensus       221 ~C~a~~~~~  229 (247)
T 2ghw_B          221 YCQQRSNWP  229 (247)
T ss_dssp             EEEECSSSS
T ss_pred             EEEEccCCC
Confidence            999998643

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=95.87  E-value=0.0088  Score=60.21  Aligned_cols=84  Identities=20%  Similarity=0.218  Sum_probs=54.6

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecC--e---eccC-CCc-ccccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQN-ESM-SASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~~-~s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      ..+..+.+.+|+.++|.|.+.+.+.+.+.|.+..  .   .+.. ... .......+...   .......|.|.++..+|
T Consensus         9 ~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~D   85 (250)
T 3esu_F            9 QSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGS---GSGTDYSLTISNLEQED   85 (250)
T ss_dssp             CSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGG
T ss_pred             ecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEe---CCCCEEEEEEccCChhh
Confidence            3445567889999999999999999999999842  1   1100 000 00000111110   11223579999999999


Q ss_pred             CCceeEeeccCCCC
Q psy12044        332 NGTFVCVAENQAGS  345 (767)
Q Consensus       332 ~GtY~CvA~N~~G~  345 (767)
                      .|.|.|.+.|..+.
T Consensus        86 ~G~Y~C~~~n~~~~   99 (250)
T 3esu_F           86 IGTYFCQQGNTLPW   99 (250)
T ss_dssp             CEEEEEEECSSSSC
T ss_pred             CEEEEEEEeeCCCc
Confidence            99999999987654

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=95.86  E-value=0.0077  Score=54.61  Aligned_cols=81  Identities=21%  Similarity=0.346  Sum_probs=50.6

Q ss_pred             ccceeeccccccccccccccc-CCCcEEEeecCee----ccCCCcccccccceeeccc--CcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI-PEAKITWLFDGVP----IQNESMSASESHAVYSTEE--GTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~----l~~~s~~~~~~~~~~~~~~--g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.+.+. +.+.+.|+++...    +.....  .....+.....  ........|.|.++..+|.|
T Consensus        10 p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG   87 (127)
T 2jju_A           10 EKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKE--GHFPRVTTVSELTKRNNLDFSISISNITPADAG   87 (127)
T ss_dssp             CSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSS--SCCTTEEEC-------CCBCCEEECSCCGGGCE
T ss_pred             CCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCC--CccCcEEeeEeeeecCCCEEEEEECCCCHHHCE
Confidence            345678899999999998775 5678999985421    111000  00001111100  01123568999999999999


Q ss_pred             ceeEeeccCC
Q psy12044        334 TFVCVAENQA  343 (767)
Q Consensus       334 tY~CvA~N~~  343 (767)
                      .|.|.+.+..
T Consensus        88 ~Y~C~~~~~~   97 (127)
T 2jju_A           88 TYYCVKFRKG   97 (127)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEcCC
Confidence            9999998753

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=95.86  E-value=0.0022  Score=62.86  Aligned_cols=78  Identities=12%  Similarity=0.287  Sum_probs=54.6

Q ss_pred             cccccccccccccccC--CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        267 QEGKNVSLLCKVSAIP--EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       267 ~~G~~vsL~C~a~g~P--~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      ..|..+.|.|.+.+.+  .+.+.|.+++..+......    ........+.....+.|.|..+...|.|.|+|.+.|..+
T Consensus       124 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~----~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~  199 (211)
T 3tv3_L          124 LQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET----TTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  199 (211)
T ss_dssp             HHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE----CCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred             hcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCccc----CCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence            3689999999998863  5789999998876542111    001112233444557789999988999999999999876


Q ss_pred             Cccc
Q psy12044        345 STSS  348 (767)
Q Consensus       345 ~s~~  348 (767)
                      ....
T Consensus       200 ~~~~  203 (211)
T 3tv3_L          200 TVEK  203 (211)
T ss_dssp             EEEE
T ss_pred             CEEe
Confidence            5443

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=95.84  E-value=0.0053  Score=60.94  Aligned_cols=77  Identities=21%  Similarity=0.367  Sum_probs=54.0

Q ss_pred             ccccccccccccccc-C-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        267 QEGKNVSLLCKVSAI-P-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       267 ~~G~~vsL~C~a~g~-P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      ..|+.+.|.|.+.+. | .+.++|.+++..+......   .........+.....+.|.+......|.|.|+|.+.|...
T Consensus       148 ~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~---~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  224 (237)
T 3sob_L          148 LKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE---SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  224 (237)
T ss_dssp             HHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE---EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             ccCCceEEEEEEcccCCCceEEEEEECCCCCCCceee---cccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCC
Confidence            357789999999884 4 5899999998876542100   0001112234445567899999999999999999999876


Q ss_pred             Cc
Q psy12044        345 ST  346 (767)
Q Consensus       345 ~s  346 (767)
                      ..
T Consensus       225 ~~  226 (237)
T 3sob_L          225 SS  226 (237)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=95.80  E-value=0.0073  Score=54.46  Aligned_cols=89  Identities=17%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             ceeecccccccccccc-cccCCCcEEEeecCe-eccCCCcc----c-ccc-cceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        263 YLEIQEGKNVSLLCKV-SAIPEAKITWLFDGV-PIQNESMS----A-SES-HAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~-~l~~~s~~----~-~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      .+.+.+|+.++|.|.. .......+.|++... .+......    . ... .+..+     ...++.|.|.+++.+|.|.
T Consensus        13 pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l-----~~~~~sL~I~nv~~~DsG~   87 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRL-----DPQSGALYISKVQKEDNST   87 (121)
T ss_dssp             CCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEE-----CTTTCCEEESSCCGGGCSE
T ss_pred             EEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEE-----eCCCceEEEeCCCHHHCeE
Confidence            3577899999999987 344456899998642 22111100    0 000 00111     1134689999999999999


Q ss_pred             eeEeeccCCC-CcccceEEEEEe
Q psy12044        335 FVCVAENQAG-STSSNYTIRIVL  356 (767)
Q Consensus       335 Y~CvA~N~~G-~s~~s~sL~V~~  356 (767)
                      |.|...+..+ .....+.+.|..
T Consensus        88 Y~c~v~~~~~~~~~~~~~L~V~~  110 (121)
T 2edo_A           88 YIMRVLKKTGNEQEWKIKLQVLD  110 (121)
T ss_dssp             EEEEEEETTTEEEECCEECEEEC
T ss_pred             EEEEEEcCCCcEEEEEEEEEEEC
Confidence            9999986654 334456666554

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=95.80  E-value=0.012  Score=57.82  Aligned_cols=76  Identities=17%  Similarity=0.350  Sum_probs=52.7

Q ss_pred             cccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCC
Q psy12044        268 EGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGS  345 (767)
Q Consensus       268 ~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~  345 (767)
                      .|..+.|.|.+.+. |.+ .+.|.+++..+.......   .......++.....+.|.|..+...|.|.|+|.|.|....
T Consensus       128 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~---~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          128 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQES---VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEE---ECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEe---cCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence            57899999999884 554 899999988765431000   0001112333445568999999999999999999998755


Q ss_pred             c
Q psy12044        346 T  346 (767)
Q Consensus       346 s  346 (767)
                      .
T Consensus       205 ~  205 (216)
T 2xzc_L          205 S  205 (216)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=95.77  E-value=0.0043  Score=62.47  Aligned_cols=75  Identities=21%  Similarity=0.311  Sum_probs=59.6

Q ss_pred             eeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+.+|+.+.|.|.+ .+.|.+.+.|.+++..+...                  .....|.|.++...|.|.|.|.+.|.
T Consensus        92 ~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~------------------~~~~~l~i~~~~~~d~G~Y~C~~~n~  153 (262)
T 3rjd_A           92 RVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF------------------HWNSNLTILKTNISHNGTYHCSGMGK  153 (262)
T ss_dssp             SEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE------------------EECCCEEESSCCGGGCEEEEEEEESS
T ss_pred             eEEecCCeEEEEEEccCCCCCceEEEEECCcccccc------------------CCCCeEEEEECChhhCEEEEEEEeCC
Confidence            456789999999999 77788899999987665311                  12356899999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .+.....+.+.|..
T Consensus       154 ~~~~~~~~~l~V~~  167 (262)
T 3rjd_A          154 HRYTSAGISVTVKE  167 (262)
T ss_dssp             SEEEEECEEEEEEC
T ss_pred             CCccccceEEEecc
Confidence            87776667776664

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=95.77  E-value=0.0088  Score=61.51  Aligned_cols=78  Identities=24%  Similarity=0.399  Sum_probs=56.4

Q ss_pred             CCCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      |.+........+.+|+.+.|.|.+.+    .+.|.+++..+.            ...     ...+.|.|.++...|.|.
T Consensus        13 P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~------------~~~-----~~~~~L~i~~~~~~d~G~   71 (290)
T 2o26_X           13 PSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE------------MVE-----NKKNEWIQEKAEATRTGT   71 (290)
T ss_dssp             CEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC------------EEE-----ECSSEEEETTCCGGGCEE
T ss_pred             CEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee------------eec-----CCCceEEEeccCHHhCeE
Confidence            34444555677889999999999988    899999876550            000     112689999999999999


Q ss_pred             eeEeeccCCCCcccceEEEEEe
Q psy12044        335 FVCVAENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       335 Y~CvA~N~~G~s~~s~sL~V~~  356 (767)
                      |.|.+.|  |. ...+.+.|..
T Consensus        72 Y~C~~~n--g~-~~~~~l~V~~   90 (290)
T 2o26_X           72 YTCSNSN--GL-TSSIYVFVRD   90 (290)
T ss_dssp             EEEEESS--SC-EEEEEEEEEC
T ss_pred             EEEEeeC--Cc-cEEEEEEEeC
Confidence            9999999  43 4445555543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=95.77  E-value=0.0037  Score=61.76  Aligned_cols=75  Identities=21%  Similarity=0.333  Sum_probs=51.2

Q ss_pred             eccccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        266 IQEGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      +..|..+.|.|.+.+. |.| .++|.+++.........    . . . ..+.....+.|.|......+ |.|+|.|.|..
T Consensus       137 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~----~-~-~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~  208 (220)
T 1pz5_B          137 DTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVS----S-V-L-QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPA  208 (220)
T ss_dssp             CSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECC----C-E-E-ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGG
T ss_pred             cCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcC----C-c-c-cCCeEEEEEEEEEcchhcCC-ceEEEEEEECC
Confidence            4678999999999987 888 99999876531100000    0 0 0 11333345778888887766 99999999998


Q ss_pred             CCccc
Q psy12044        344 GSTSS  348 (767)
Q Consensus       344 G~s~~  348 (767)
                      |...+
T Consensus       209 ~~~~~  213 (220)
T 1pz5_B          209 SKVDL  213 (220)
T ss_dssp             GTEEE
T ss_pred             ccEee
Confidence            86444

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=95.76  E-value=0.011  Score=66.78  Aligned_cols=84  Identities=13%  Similarity=0.283  Sum_probs=59.2

Q ss_pred             eecccccccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      .+..|+.+.|.|.+.+.+.+  .++|.+++..+.......    .......+.....+.|.|.++...|.|.|.|.|.|.
T Consensus       125 ~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~----~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  200 (523)
T 2rcj_C          125 EELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT----KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE  200 (523)
T ss_pred             cccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec----cccccCCCCEEEEEEEEEechhcCCCceEEEEEEec
Confidence            44578899999999998764  899999887664321110    001112233344568999999999999999999999


Q ss_pred             CCCcccceEE
Q psy12044        343 AGSTSSNYTI  352 (767)
Q Consensus       343 ~G~s~~s~sL  352 (767)
                      .|.....+.+
T Consensus       201 ~~~~~~~~~~  210 (523)
T 2rcj_C          201 GSTVEKTVAP  210 (523)
T ss_pred             Ccccccceee
Confidence            8876655543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.75  E-value=0.0025  Score=63.04  Aligned_cols=111  Identities=11%  Similarity=0.067  Sum_probs=73.6

Q ss_pred             CCccEEEeeCC-CCCCCCchhhhcc--CCCCccEEEccCCCCCccC----cccccCCCCCCEEEccCCCCCCCC----CC
Q psy12044         49 PNTQVLDYTGN-NLKTLHNEKFQKM--GLVNLQKIYLSRCRISVID----SKAFRGLTNLVDLDFSHNVLQTVP----SD  117 (767)
Q Consensus        49 ~~L~~L~Ls~N-~L~~l~~~~f~~~--~L~~L~~L~Ls~N~L~~i~----p~~f~~L~~L~~L~Ls~N~Lt~l~----p~  117 (767)
                      ..|+.|+|++| .|..-....+...  .-..|+.|+|++|.|....    ..++..-..|+.|+|++|.|....    ..
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            57999999986 8875332222210  2468999999999998643    345556689999999999998532    23


Q ss_pred             CCCCCCCCcEEECCCCcC---ccc----ccCCcCCCCCccEEeccCCCc
Q psy12044        118 TFPDYPSLMKLTLSGNPI---KQI----KTGAFQPLSYLVTLELSKCGI  159 (767)
Q Consensus       118 ~f~~l~~L~~L~Ls~N~l---~~l----~~~~~~~l~~L~~L~Ls~N~L  159 (767)
                      .+..-..|+.|+|++|..   ...    ....+..-++|+.|+|+.|.+
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            455667899999997643   221    112333445666777765544

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=95.75  E-value=0.0044  Score=60.74  Aligned_cols=74  Identities=23%  Similarity=0.296  Sum_probs=51.5

Q ss_pred             eeccccccccccccccc-CCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        265 EIQEGKNVSLLCKVSAI-PEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~-P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      .+..|..+.|.|.+.+. |.| .+.|.+++..+......    . .  ...+.....+.|.|..+...+ |.|+|.|.|.
T Consensus       129 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~----~-~--~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~  200 (210)
T 3d9a_H          129 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFP----A-V--LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHP  200 (210)
T ss_dssp             SCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC----C-E--EETTEEEEEEEEEEEGGGTTT-SCCEEEEEEG
T ss_pred             ccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcC----C-c--cCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeC
Confidence            34678999999999987 888 99999987643211000    0 0  011333445678998888766 9999999998


Q ss_pred             CCCc
Q psy12044        343 AGST  346 (767)
Q Consensus       343 ~G~s  346 (767)
                      .|..
T Consensus       201 ~~~~  204 (210)
T 3d9a_H          201 ASST  204 (210)
T ss_dssp             GGTE
T ss_pred             CCCc
Confidence            8764

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=95.74  E-value=0.0098  Score=61.26  Aligned_cols=84  Identities=15%  Similarity=0.198  Sum_probs=54.8

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCe-----eccC-CCcc-cccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGV-----PIQN-ESMS-ASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~-----~l~~-~s~~-~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      ..+..+.+.+|+.++|.|.+.+.+.+.+.|+++..     .+.. .... ......+....   ......|.|.++..+|
T Consensus        17 ~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D   93 (276)
T 3auv_A           17 QSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG---SGTDFTLTISSLQPED   93 (276)
T ss_dssp             EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGG
T ss_pred             eCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec---cCCeEEEEEccCChhh
Confidence            33456678899999999999999999999988431     1110 0000 00001111110   1123579999999999


Q ss_pred             CCceeEeeccCCCC
Q psy12044        332 NGTFVCVAENQAGS  345 (767)
Q Consensus       332 ~GtY~CvA~N~~G~  345 (767)
                      .|.|.|.+.|..+.
T Consensus        94 sG~Y~C~~~n~~~~  107 (276)
T 3auv_A           94 FATYYCQQHYTTPP  107 (276)
T ss_dssp             CEEEEEEECSSSSC
T ss_pred             CEEEEEEEecCCcc
Confidence            99999999987654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=95.72  E-value=0.013  Score=60.85  Aligned_cols=84  Identities=17%  Similarity=0.262  Sum_probs=60.0

Q ss_pred             eecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        265 EIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       265 ~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ....+..+.+.|.+ .+.|.+.+.|.+++..+.....         ....+.....+.|.|..+...|.|.|+|.+.|..
T Consensus       125 ~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~---------~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~  195 (308)
T 4fom_A          125 IDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT---------SFPNETATIISQYKLFPTRFARGRRITCVVKHPA  195 (308)
T ss_dssp             CTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE---------ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTT
T ss_pred             EEcCCceEEEEEEecCCcCCceEEEEECCcccccccc---------eeeeecccccccceEEeeeecCCccEEEEEEccC
Confidence            34457788999975 6889999999998766533211         1122333445679999999999999999999998


Q ss_pred             CCcccceEEEEEee
Q psy12044        344 GSTSSNYTIRIVLK  357 (767)
Q Consensus       344 G~s~~s~sL~V~~~  357 (767)
                      |.......+.+.+.
T Consensus       196 ~~~~~~~~~~l~V~  209 (308)
T 4fom_A          196 LEKDIRYSFILDIQ  209 (308)
T ss_dssp             CSSCEEEEEECCCC
T ss_pred             CCCceEEeEEEEEe
Confidence            87766555554443

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=94.70  E-value=0.0017  Score=57.33  Aligned_cols=81  Identities=22%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecC--eecc---C-CCcc-cccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--VPIQ---N-ESMS-ASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~~l~---~-~s~~-~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|.+..  ....   . .... .....++.... ........|.|.++..+|.|
T Consensus         6 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~~~L~I~~v~~~DsG   84 (110)
T 1u3h_A            6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF-NKREKKLSLHIADSQPGDSA   84 (110)
Confidence            34567789999999999988888899998843  1110   0 0000 00001111111 11233468999999999999


Q ss_pred             ceeEeeccC
Q psy12044        334 TFVCVAENQ  342 (767)
Q Consensus       334 tY~CvA~N~  342 (767)
                      .|.|.+.+.
T Consensus        85 ~Y~C~~~~~   93 (110)
T 1u3h_A           85 TYFCAASAN   93 (110)
Confidence            999999874

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=95.71  E-value=0.01  Score=55.69  Aligned_cols=81  Identities=16%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecC--e---eccC-CCccccc-ccceeecccCcceeeeEEEEeeeccCC
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDG--V---PIQN-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g--~---~l~~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      ..+..+.+.+|+.++|.|.+.+.+.+.+.|++..  .   .+.. ....... ..++....   ......|.|.+++.+|
T Consensus        21 q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~---~~~~~sL~I~~v~~~D   97 (146)
T 2yc1_B           21 QSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSG---SGTDFTLTISSLEPED   97 (146)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGG
T ss_pred             EeCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEec---CCCEEEEEECCCCHHH
Confidence            3345677889999999999988777889998842  1   1111 1000000 11111110   1234679999999999


Q ss_pred             CCceeEeeccC
Q psy12044        332 NGTFVCVAENQ  342 (767)
Q Consensus       332 ~GtY~CvA~N~  342 (767)
                      .|.|.|.+.+.
T Consensus        98 sG~Y~C~~~~~  108 (146)
T 2yc1_B           98 FAIYYCQQYRY  108 (146)
T ss_dssp             CSEEEEEECSS
T ss_pred             CEEEEEEEecC
Confidence            99999999875

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=95.70  E-value=0.012  Score=58.76  Aligned_cols=93  Identities=17%  Similarity=0.210  Sum_probs=58.0

Q ss_pred             ccceeecccccccccccccccC----CCcEEEeecC--ee---ccC-CCcccc-cccceeecccCcceeeeEEEEeeecc
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP----EAKITWLFDG--VP---IQN-ESMSAS-ESHAVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P----~p~itW~~~g--~~---l~~-~s~~~~-~~~~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      +....+.+|+.+.|.|.+.+.+    .+.+.|.++.  ..   +.. ...... ...++....   ......|.|.++..
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~   84 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG---SRTDFTLIIDPVEA   84 (240)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCG
T ss_pred             CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe---cCCeEEEEEcCCCh
Confidence            3456788999999999999988    7899998842  21   110 000000 011111111   11234799999999


Q ss_pred             CCCCceeEeeccCCCC-cccceEEEEEe
Q psy12044        330 DDNGTFVCVAENQAGS-TSSNYTIRIVL  356 (767)
Q Consensus       330 sD~GtY~CvA~N~~G~-s~~s~sL~V~~  356 (767)
                      +|.|.|.|.+.|..+. ......+.|..
T Consensus        85 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  112 (240)
T 1moe_A           85 DDVATYYCQQTNEDPYTFGGGTKLEIKG  112 (240)
T ss_dssp             GGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred             hhCEEEEEEEccCCceeecCCEEEEEec
Confidence            9999999999998664 22344555443

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=95.69  E-value=0.0072  Score=59.39  Aligned_cols=91  Identities=14%  Similarity=0.252  Sum_probs=56.1

Q ss_pred             eeecccccccccccccccCC-----CcEEEeecCeeccCCCc------ccccccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPE-----AKITWLFDGVPIQNESM------SASESHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~-----p~itW~~~g~~l~~~s~------~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      +.+.+|+.+.|.|.+.+.+.     +.+.|.+++....-...      .........+...........|.|.++...|.
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            45678999999999988754     78999986532210000      00001112222222233357899999999999


Q ss_pred             CceeEeeccCCCCcccceEEEEE
Q psy12044        333 GTFVCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       333 GtY~CvA~N~~G~s~~s~sL~V~  355 (767)
                      |.|.|.+.+. +.....+.+.|.
T Consensus        85 G~Y~C~~~~~-~~~~~~~~l~V~  106 (222)
T 4i0k_A           85 GSYTCFVSIQ-DFDSAAVSLQVA  106 (222)
T ss_dssp             SCEEEEEEEC-CCCCCCCCCCCC
T ss_pred             EEEEEEEEeC-CCceEEEEEEEE
Confidence            9999999985 333444444443

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=95.68  E-value=0.0081  Score=58.56  Aligned_cols=69  Identities=14%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+.+|+.++|.|.+.. +.+.+.|++++..+......    .  ..   ........|.|.++...|.|.|.|.+.+.
T Consensus        17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~----~--~~---~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~   85 (201)
T 1nkr_A           17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLI----G--EH---HDGVSKANFSISRMTQDLAGTYRCYGSVT   85 (201)
T ss_dssp             SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEE----C--EE---ETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceee----e--ec---CCCCceEEEEeccCCcccCeEEEEeEecC
Confidence            45678999999999874 77899999987654321100    0  00   01123567999999999999999999764

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=95.68  E-value=0.0095  Score=71.19  Aligned_cols=88  Identities=24%  Similarity=0.388  Sum_probs=64.5

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|..+.|.|.+.+.|.+.+.|.+++..+.........   .+...  .....+.|.|.++...|.|.|+|.+.|..
T Consensus       439 ~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~---~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  513 (816)
T 3dmk_A          439 ETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVG---QYVTV--NGDVVSYLNITSVHANDGGLYKCIAKSKV  513 (816)
T ss_dssp             EEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEE---EEECT--TSCEEEEEEESSCCTTTCEEEEEEEEETT
T ss_pred             eEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccc---cEEec--CCCcEEEEEEeeccccCCEEEEEEEEECC
Confidence            45678999999999999999999999988776543221000   00111  12234579999999999999999999999


Q ss_pred             CCcccceEEEEEe
Q psy12044        344 GSTSSNYTIRIVL  356 (767)
Q Consensus       344 G~s~~s~sL~V~~  356 (767)
                      |.....+.+.|..
T Consensus       514 g~~~~~~~l~V~~  526 (816)
T 3dmk_A          514 GVAEHSAKLNVYG  526 (816)
T ss_dssp             EEEEEEEEEEECS
T ss_pred             CeEEEEEEEEEec
Confidence            9877777666653

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=95.68  E-value=0.0096  Score=58.47  Aligned_cols=77  Identities=17%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             eeecccccccccccccccCC---CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        264 LEIQEGKNVSLLCKVSAIPE---AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~---p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ..+..|+.++|.|.+.+.+.   +.++|++++..+.........      .........+.|.+......|.|.|+|.|.
T Consensus       101 ~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~------~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~  174 (202)
T 1vca_A          101 GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA------DRKSLETKSLEVTFTPVIEDIGKVLVCRAK  174 (202)
T ss_dssp             SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC------SSCCCEEEEEEEEECCCGGGTTCEEEEEEE
T ss_pred             eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccccccc------CcCcceEEEEEEEEEeeeccCCCeEEEEEE
Confidence            45778999999999988643   378999998766432211000      000112234566777777788899999999


Q ss_pred             cCCCCc
Q psy12044        341 NQAGST  346 (767)
Q Consensus       341 N~~G~s  346 (767)
                      |..|..
T Consensus       175 n~~~~~  180 (202)
T 1vca_A          175 LHIDEM  180 (202)
T ss_dssp             ECSCCC
T ss_pred             ccccCC
Confidence            988764

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=95.65  E-value=0.0057  Score=60.73  Aligned_cols=76  Identities=16%  Similarity=0.251  Sum_probs=53.7

Q ss_pred             eccccccccccccccc---CC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        266 IQEGKNVSLLCKVSAI---PE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~---P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      +..|+.+.|.|.+.+.   |. +.+.|++++..+......     .......+.....+.|.|.++...|.|.|.|.+.|
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~   97 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ-----THREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNN   97 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEE-----EEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEE
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccc-----cccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEEC
Confidence            6789999999999887   33 799999988665422110     00011122233457899999999999999999999


Q ss_pred             CCCCc
Q psy12044        342 QAGST  346 (767)
Q Consensus       342 ~~G~s  346 (767)
                      ..+..
T Consensus        98 ~~~~~  102 (218)
T 2rgs_A           98 KDLPS  102 (218)
T ss_dssp             TTCSS
T ss_pred             CcCCC
Confidence            87643

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=95.65  E-value=0.0048  Score=66.07  Aligned_cols=71  Identities=11%  Similarity=0.162  Sum_probs=56.1

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+.+|+.+.|.|.+.+.|.+.+.|.+++..+                    ......|.|.++...|.|.|.|.+.|..+
T Consensus       107 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------------------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~  166 (363)
T 1wio_A          107 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------------------IQGGKTLSVSQLELQDSGTWTCTVLQNQK  166 (363)
T ss_dssp             SEESBSCEEEEEECCTTCCCCEEEECSSSCE--------------------EEESSEEEECSBCGGGCEECEEEEEETTE
T ss_pred             EEecCCCEEEEEEcCCCCCCeEEEEcCCCcc--------------------cccceEEEEeeCChhcCCEEEEEEecCCC
Confidence            5678999999999999999999999876432                    11345799999999999999999998766


Q ss_pred             CcccceEEEEE
Q psy12044        345 STSSNYTIRIV  355 (767)
Q Consensus       345 ~s~~s~sL~V~  355 (767)
                      .....+.+.|.
T Consensus       167 ~~~~~~~l~v~  177 (363)
T 1wio_A          167 KVEFKIDIVVL  177 (363)
T ss_dssp             EEEECCEECEE
T ss_pred             eEEEEEEEEEe
Confidence            65555555444

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=95.64  E-value=0.0061  Score=64.29  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             CCCcccHHHHHhcccCCCCCCCCccccCCCCcceEEe-eCCceEEEec
Q psy12044        427 ESPKYTSVNATSATCMDKVNGGYIIADGHNDMMLYAT-DSGILVATNN  473 (767)
Q Consensus       427 ~~~~fs~~El~~AT~~nnFs~~nlIG~GgfG~VYKG~-~dG~~VA~~~  473 (767)
                      ..+.|++.++..++  ++|.-..+||+|+||.||+|. .+|+.||++.
T Consensus        16 ~~~~~~~~~~~~~~--~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~   61 (326)
T 3uim_A           16 QLKRFSLRELQVAS--DNFSNKNILGRGGFGKVYKGRLADGTLVAVKR   61 (326)
T ss_dssp             CCEECCTHHHHTTT--TSSCSTTEEECCSSSEEEEECCSSSCCEEEEE
T ss_pred             ccceecHHHHHHHh--hccccceeEecCCCcEEEEEEecCCCEEEEEE
Confidence            44678899999999  999999999999999999999 8999999987

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=95.64  E-value=0.014  Score=55.44  Aligned_cols=72  Identities=19%  Similarity=0.361  Sum_probs=50.5

Q ss_pred             eeecccccccccccccccCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ..+.+|+.+.|.|.+.+.+.+  .+.|.+++..+......               .....|.+.  ...|.|.|.|.+.|
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~---------------~~~~~l~i~--~~~d~G~Y~C~~~n   70 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---------------GQKTEFKVD--SDDQWGEYSCVFLP   70 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---------------CSEEEEEEC--GGGCCEEEEEEEES
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc---------------CCcEEEEEe--chhhCeEEEEEEEC
Confidence            456789999999999988777  89999988776543221               112344444  68899999999998


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      .   ....+.+.|.
T Consensus        71 ~---~~~~~~l~V~   81 (184)
T 3b5h_A           71 E---PMGTANIQLH   81 (184)
T ss_dssp             T---TSCEEEEEEC
T ss_pred             C---cCcEEEEEEe
Confidence            2   2244455554

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=95.61  E-value=0.01  Score=58.30  Aligned_cols=76  Identities=20%  Similarity=0.284  Sum_probs=53.6

Q ss_pred             ecccccccccccccccC----CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        266 IQEGKNVSLLCKVSAIP----EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~P----~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      +..|+.+.|.|.+.+.+    .+.+.|.+++..+......   ..  .....+.....+.|.|.++..+|.|.|.|.+.|
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~---~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~   89 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTK---PR--EEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNS   89 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEE---CC--CEETTTEEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccC---CC--cCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEc
Confidence            67899999999998874    2489999988655322110   00  001122233456899999999999999999999


Q ss_pred             CCCCc
Q psy12044        342 QAGST  346 (767)
Q Consensus       342 ~~G~s  346 (767)
                      ..+..
T Consensus        90 ~~~~~   94 (207)
T 2vol_A           90 AAFPA   94 (207)
T ss_dssp             TTCSS
T ss_pred             cCCCC
Confidence            88754

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=95.61  E-value=0.0081  Score=53.35  Aligned_cols=78  Identities=15%  Similarity=0.241  Sum_probs=50.2

Q ss_pred             ccceeecccccccccccccccC--CCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP--EAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P--~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +..+.+.+|+.++|.|.+.+.+  .+.+.|.++  +.....  +.... .++..... .......|.|.++..+|.|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~--~~~~~-~r~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~   82 (113)
T 1sq2_N            7 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEE--SISKG-GRYVETVN-SGSKSFSLRINDLTVEDGGTYR   82 (113)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCE--ECCCB-TTEEEEEE-TTTTEEEEEECSCCGGGCEEEE
T ss_pred             CccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceE--eEEeC-CCEEEEEe-CCCCEEEEEECCCChhhCEEEE
Confidence            3456788999999999988765  578999884  221110  00001 11111111 1123568999999999999999


Q ss_pred             EeeccC
Q psy12044        337 CVAENQ  342 (767)
Q Consensus       337 CvA~N~  342 (767)
                      |.+.+.
T Consensus        83 C~~~~~   88 (113)
T 1sq2_N           83 CGLGVA   88 (113)
T ss_dssp             EEECBT
T ss_pred             EEEEeC
Confidence            999874

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=95.61  E-value=0.035  Score=49.14  Aligned_cols=79  Identities=18%  Similarity=0.259  Sum_probs=48.0

Q ss_pred             ceeecccccccccccccc--cCCCcEEEeecC-ee------cc-CCC--cccccccceeecccCcceeeeEEEEeeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSA--IPEAKITWLFDG-VP------IQ-NES--MSASESHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g--~P~p~itW~~~g-~~------l~-~~s--~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      .+.+..|+.++|.|....  .....+.|.+.. ..      +. ...  ........+.+... .......|.|.+++.+
T Consensus         5 ~v~~~~G~~vtL~C~~~~~~~~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~I~~v~~~   83 (116)
T 3bia_X            5 TIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGK-VQFGEVSLTISNTNRG   83 (116)
T ss_dssp             EEEEETTSCEEECCBCTTCCTTTCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSC-GGGTBCCEEECSCCGG
T ss_pred             EEEEeeCCcEEEEEEeeCCCCCeEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEecc-CCCCEEEEEEccCChh
Confidence            467789999999999863  234469998854 11      10 000  00000011222111 2334567999999999


Q ss_pred             CCCceeEeeccC
Q psy12044        331 DNGTFVCVAENQ  342 (767)
Q Consensus       331 D~GtY~CvA~N~  342 (767)
                      |.|.|.|.+...
T Consensus        84 Dsg~Y~C~v~~~   95 (116)
T 3bia_X           84 DSGVYCCRIEVP   95 (116)
T ss_dssp             GCEEEEEEEECS
T ss_pred             HCEEEEEEEEcC
Confidence            999999998754

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=95.60  E-value=0.014  Score=52.87  Aligned_cols=80  Identities=18%  Similarity=0.244  Sum_probs=51.4

Q ss_pred             ccceeecccccccccccccccC----CCcEEEeecC--e---eccCC-Cc-ccccccceeecccCcceeeeEEEEeeecc
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP----EAKITWLFDG--V---PIQNE-SM-SASESHAVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P----~p~itW~~~g--~---~l~~~-s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      +..+.+.+|+.++|.|.+...+    .+.+.|++..  .   .+... .. ......++...   .......|.|.++..
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~sL~I~~v~~   84 (126)
T 4ffy_L            8 PASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGS---GSETDFTLTIDSVET   84 (126)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEESSCCG
T ss_pred             CCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEe---cCCCEEEEEECCCCH
Confidence            3456788999999999998876    6789998832  1   11110 00 00001111111   122356899999999


Q ss_pred             CCCCceeEeeccCC
Q psy12044        330 DDNGTFVCVAENQA  343 (767)
Q Consensus       330 sD~GtY~CvA~N~~  343 (767)
                      +|.|.|.|.+.+..
T Consensus        85 ~DsG~Y~C~~~~~~   98 (126)
T 4ffy_L           85 DDAATYYCQQNNED   98 (126)
T ss_dssp             GGCEEEEEEECSSS
T ss_pred             HHCEEEEEEEecCC
Confidence            99999999998754

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=95.58  E-value=0.0065  Score=61.33  Aligned_cols=77  Identities=17%  Similarity=0.351  Sum_probs=52.3

Q ss_pred             cccccccccccccccCC--CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        267 QEGKNVSLLCKVSAIPE--AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       267 ~~G~~vsL~C~a~g~P~--p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      ..|..+.|.|.+.+.+.  +.++|.+++..+......   ........++.....+.|.|.++..+|.|.|+|.|.|...
T Consensus       167 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~---~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  243 (254)
T 2c1o_A          167 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN---SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  243 (254)
T ss_dssp             HHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEE---EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             ccCCcEEEEEEEecccCCCcEEEEEECCCcccCccee---ccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCC
Confidence            35778999999988543  459999998776543100   0000111223334567899999999999999999999876


Q ss_pred             Cc
Q psy12044        345 ST  346 (767)
Q Consensus       345 ~s  346 (767)
                      ..
T Consensus       244 ~~  245 (254)
T 2c1o_A          244 TS  245 (254)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=95.57  E-value=0.0073  Score=59.96  Aligned_cols=76  Identities=13%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             eccccccccccccccc-CC--CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        266 IQEGKNVSLLCKVSAI-PE--AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~-P~--p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      +..|..+.|.|.+.+. |.  +.+.|.+++..+.....     . ......+.....+.|.|......|.|.|+|.+.|.
T Consensus       134 ~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~-----~-~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~  207 (220)
T 2fbj_H          134 ALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNF-----P-PALASGGRYTMSNQLTLPAVECPEGESVKCSVQHD  207 (220)
T ss_dssp             SSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEEC-----C-CEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEET
T ss_pred             ccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEec-----C-ceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcC
Confidence            4578899999999887 66  79999998765421000     0 11122344445567888888888999999999998


Q ss_pred             CCCcc
Q psy12044        343 AGSTS  347 (767)
Q Consensus       343 ~G~s~  347 (767)
                      .|...
T Consensus       208 ~~~~~  212 (220)
T 2fbj_H          208 SNPVQ  212 (220)
T ss_dssp             TSCCE
T ss_pred             CCceE
Confidence            87644

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=95.52  E-value=0.019  Score=58.19  Aligned_cols=82  Identities=18%  Similarity=0.228  Sum_probs=52.7

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--Ceecc---C-CCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQ---N-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~---~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +....+.+|+.++|.|.+.+.+.+.+.|++.  +....   . ....... ...+...   .......|.|.++..+|.|
T Consensus       145 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~v~~~D~G  221 (256)
T 3umt_A          145 PSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGS---RSGSDYSLTISSLESEDFV  221 (256)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEE---EETTEEEEEECSCCGGGCS
T ss_pred             CCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEe---cCCCEEEEEECCCChhHCE
Confidence            3346788999999999999999899999873  22111   0 0000000 0111111   1122457999999999999


Q ss_pred             ceeEeeccCCCC
Q psy12044        334 TFVCVAENQAGS  345 (767)
Q Consensus       334 tY~CvA~N~~G~  345 (767)
                      .|.|.+.+..+.
T Consensus       222 ~Y~C~~~~~~~~  233 (256)
T 3umt_A          222 DYYCLQYASSPP  233 (256)
T ss_dssp             EEEEEECSSSSC
T ss_pred             EEEEEEeeCCCc
Confidence            999999986543

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=95.50  E-value=0.012  Score=51.51  Aligned_cols=80  Identities=14%  Similarity=0.251  Sum_probs=49.8

Q ss_pred             cceeeccccccccccc-ccccC-CCcEEEeecCeec---c-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        262 FYLEIQEGKNVSLLCK-VSAIP-EAKITWLFDGVPI---Q-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~-a~g~P-~p~itW~~~g~~l---~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      ....+.+|+.++|.|. ..+.+ .+.+.|.+.....   . ........ ..++....+ .......|.|.++..+|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~DsG~   86 (109)
T 1pew_A            8 HSVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSID-RSSNSASLTISGLKTEDEAD   86 (109)
T ss_dssp             SEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEE-TTTTEEEEEECSCCGGGCEE
T ss_pred             CCEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEec-cCCCEEEEEECCCChhhCEE
Confidence            4567889999999999 77665 5789998855211   0 00000000 111111110 12235689999999999999


Q ss_pred             eeEeeccC
Q psy12044        335 FVCVAENQ  342 (767)
Q Consensus       335 Y~CvA~N~  342 (767)
                      |.|.+.+.
T Consensus        87 Y~C~~~~~   94 (109)
T 1pew_A           87 YYCQSYDA   94 (109)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEeC
Confidence            99999763

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=95.49  E-value=0.013  Score=64.53  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=56.5

Q ss_pred             ceeecccccccccccccccCCC---cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEA---KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p---~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ...+.+|+.+.|.|.+.+.+.+   .+.|++++..+......             .....+.|.|.++...|.|.|.|.+
T Consensus        95 ~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~-------------~~~~~~~L~i~~~~~~d~G~Y~C~a  161 (450)
T 1z7z_I           95 PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-------------GEPAEVTTTVLVRRDHHGANFSCRT  161 (450)
T ss_dssp             CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC-------------TTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             CceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc-------------ccccceEEEEEeeccccCceEEEEE
Confidence            3567789999999999999888   89999998776432211             0122458999999999999999999


Q ss_pred             ccCCCCcc
Q psy12044        340 ENQAGSTS  347 (767)
Q Consensus       340 ~N~~G~s~  347 (767)
                      .|..|...
T Consensus       162 ~n~~g~~~  169 (450)
T 1z7z_I          162 ELDLRPQG  169 (450)
T ss_dssp             EEECGGGT
T ss_pred             EcccCCCC
Confidence            99987654

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=95.49  E-value=0.015  Score=66.43  Aligned_cols=91  Identities=21%  Similarity=0.399  Sum_probs=60.1

Q ss_pred             eeecccccccccccc-cccCCCcEEEeecCeeccCCCccccc-ccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ..+..|+.++|.|.+ .+.|.+.+.|.+++..+......... ...  +.........+.|.|.+++.+|.|.|+|.+.|
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGP--WDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSG--GGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred             cceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCC--cCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence            567889999999999 78899999999975422111000000 000  00000111234799999999999999999999


Q ss_pred             CCCCc-ccceEEEEEe
Q psy12044        342 QAGST-SSNYTIRIVL  356 (767)
Q Consensus       342 ~~G~s-~~s~sL~V~~  356 (767)
                      ..|.. ...+.+.|..
T Consensus       454 ~~~~~~~~~~~l~V~~  469 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQ  469 (581)
T ss_dssp             TTSCEEEEEEEEEEEB
T ss_pred             CCCceeEEEEEEEEEc
Confidence            98877 5566666654

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=95.47  E-value=0.013  Score=59.60  Aligned_cols=103  Identities=14%  Similarity=0.159  Sum_probs=0.0

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC-
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA-  343 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~-  343 (767)
                      .+.+|+.++|.|.+.+.+. .+.|++++..+......              ......|.|.++..+|.|.|.|.+.|.. 
T Consensus       112 ~v~~G~~vtL~C~~~~~~~-~~~w~k~g~~~~~~~~~--------------~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~  176 (242)
T 1p6f_A          112 EVISGEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGY--------------GKVQAEFPLGPVTTAHRGTYRCFGSYNNH  176 (242)
T ss_dssp             EEETTCEEEEEEECTTSCS-EEEEEECSSSCEEEEEE--------------CSSEEEEEEEECCGGGCEEEEEEEEEETT
T ss_pred             ccCCCCcEEEEEecCCCCC-EEEEEECCCccCccccC--------------CCceEEEEeCCCccccCEEEEEEEECCCC


Q ss_pred             --CCcccceEEEEEeecccceeecccc-------------------------ceeeeEEEeeehhh
Q psy12044        344 --GSTSSNYTIRIVLKEENVEVVTVFP-------------------------LEYVLIVSGIISVC  382 (767)
Q Consensus       344 --G~s~~s~sL~V~~~~~p~~~~~~~~-------------------------~~~~~iIigivv~l  382 (767)
                        ......+.|.|.............+                         ......++.+.++.
T Consensus       177 ~~s~~S~~~~l~V~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~r~~~a~  242 (242)
T 1p6f_A          177 AWSFPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHALWDHTAQNLLRMGLAF  242 (242)
T ss_dssp             EECCCCCCEEEEEEC---------------------------------------------------
T ss_pred             cccCCCCCEEEEEeccCCCCcccCcCCCccccccccccccccCCCCCCCCCccchheeeeEEEecC

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=95.46  E-value=0.0044  Score=60.76  Aligned_cols=77  Identities=17%  Similarity=0.363  Sum_probs=49.8

Q ss_pred             ecccccccccccccc-cCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        266 IQEGKNVSLLCKVSA-IPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       266 v~~G~~vsL~C~a~g-~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ...+..+.|.|.+.+ .|.+ .+.|.+++..+.......     ......+.....+.|.+......|.|.|+|.|.|..
T Consensus       133 ~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~-----~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~  207 (218)
T 3s96_B          133 ELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTS-----NPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEG  207 (218)
T ss_dssp             HHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC-------------------CEEEEEEEEEEHHHHHTCSCEEEEEEETT
T ss_pred             cccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecC-----cccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCC
Confidence            345678999999988 5666 899999988775421110     011113333445668888888889999999999987


Q ss_pred             CCcc
Q psy12044        344 GSTS  347 (767)
Q Consensus       344 G~s~  347 (767)
                      +...
T Consensus       208 ~~~~  211 (218)
T 3s96_B          208 DTVE  211 (218)
T ss_dssp             EEEE
T ss_pred             Cccc
Confidence            6543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	767
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-28
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-23
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-12
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	1e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-11
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	4e-11
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-10
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-10
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	3e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-09
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	7e-09
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-08
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	4e-07
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-07
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	3e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	4e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	4e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-06
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-05
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	3e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	3e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-05
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	7e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	6e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	7e-04
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.001
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.001
d1mjul2	107	b.1.1.2 (L:108-214) Immunoglobulin light chain kap	0.001
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.002
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.003
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.004

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-28
 Identities = 64/284 (22%), Positives = 103/284 (36%), Gaps = 54/284 (19%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
           CP +C+C +   K T  C  + L  V  G+   +Q +   GN +  +    F+     NL
Sbjct: 2   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFR--ACRNL 58

Query: 78  QKIYLSRCR-------------------------ISVIDSKAFRGLTNLVDLDFSHNVLQ 112
             ++L                             +  +D   F GL  L  L      LQ
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDS 172
            +    F    +L  L L  N ++ +    F+ L  L  L L    I  + + AF GL S
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 173 LEWLKLDNNKITTISGSNI-------------------------LPTGLHGIDLHHNPWT 207
           L+ L L  N++  +                                  L  + L+ NPW 
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

Query: 208 CDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDEL 251
           CDC    L  WL+  +   + +  CS+P RL+   +K+L+ ++L
Sbjct: 239 CDCRARPLWAWLQKFRGSSS-EVPCSLPQRLAGRDLKRLAANDL 281

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.4 bits (246), Expect = 1e-23
 Identities = 55/256 (21%), Positives = 87/256 (33%), Gaps = 33/256 (12%)

Query: 22  CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIY 81
           C          V C  ++L  +   +  +T +L  + N L T             L ++ 
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLN 61

Query: 82  LSRCRISVIDSKAFRGLTNLVDLDFSHNV-----------------------LQTVPSDT 118
           L R  +     +    L  L  LD SHN                        L ++P   
Sbjct: 62  LDRAEL--TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 119 FPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKL 178
                 L +L L GN +K +  G   P   L  L L+   +  +      GL++L+ L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 179 DNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRL 238
             N + TI         L    LH NPW C+C ++  RRWL+             V  + 
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE------NVYVWKQG 233

Query: 239 SSVTIKQLSIDELACE 254
             V     ++  + C+
Sbjct: 234 VDVKAMTSNVASVQCD 249

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.7 bits (208), Expect = 2e-18
 Identities = 47/215 (21%), Positives = 79/215 (36%), Gaps = 55/215 (25%)

Query: 17  ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVN 76
            CP  C C  +     V+C +  L  V + + P+T +LD                     
Sbjct: 3   VCPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLD--------------------- 37

Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK 136
                L   +I+ I    F+ L NL  L   +N +  +    F     L +L LS N +K
Sbjct: 38  -----LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 137 QI---------------------KTGAFQPLSYLVTLELSKCGIEVI--EDAAFVGLDSL 173
           ++                     +   F  L+ ++ +EL    ++    E+ AF G+  L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 174 EWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTC 208
            ++++ +  ITTI     LP  L  + L  N  T 
Sbjct: 153 SYIRIADTNITTIPQG--LPPSLTELHLDGNKITK 185

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 8e-15
 Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 11/208 (5%)

Query: 21  SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKI 80
             + K     +  E     +   V        V++   N LK+   E     G+  L  I
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 81  YLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT 140
            ++   I+ I         +L +L    N +  V + +     +L KL LS N I  +  
Sbjct: 156 RIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 212

Query: 141 GAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTG----- 195
           G+     +L  L L+   +  +          ++ + L NN I+ I  ++  P G     
Sbjct: 213 GSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271

Query: 196 --LHGIDLHHNPWTCDCLLIGLRRWLES 221
               G+ L  NP     +     R +  
Sbjct: 272 ASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 7e-11
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 6/160 (3%)

Query: 104 LDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE 163
           +  S   L+ VP D  PD      L L  N I +IK G F+ L  L TL L    I  I 
Sbjct: 15  VQCSDLGLEKVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 71

Query: 164 DAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTK 223
             AF  L  LE L L  N++  +            +  +        +  GL + +    
Sbjct: 72  PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 131

Query: 224 TPMAIDPICSVPP---RLSSVTIKQLSIDELACEPQITPS 260
               +            +  ++  +++   +   PQ  P 
Sbjct: 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 171

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 20/111 (18%)

Query: 46  GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLD 105
           G   NT  L     N   L            +Q +YL    IS I S  F          
Sbjct: 213 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK- 271

Query: 106 FSHNVLQTVPSDTFPDYPSLMKLTLSGNPIK--QIKTGAFQPLSYLVTLEL 154
                             S   ++L  NP++  +I+   F+ +     ++L
Sbjct: 272 -----------------ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 66.4 bits (160), Expect = 5e-13
 Identities = 52/239 (21%), Positives = 77/239 (32%), Gaps = 53/239 (22%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNL 77
           CP  C C+      TV+C  + L  +   +  +T  L    N                  
Sbjct: 2   CPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNE----------------- 40

Query: 78  QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
                      +     F  L +LV L+   N L  +  + F     + +L L  N IK+
Sbjct: 41  --------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLH 197
           I    F  L  L TL L    I  +   +F  L+SL                        
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS---------------------- 130

Query: 198 GIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEPQ 256
            ++L  NP+ C+C L     W    K+       C  P ++  V IK L   E  C  +
Sbjct: 131 -LNLASNPFNCNCHLAWFAEW-LRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 3e-12
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 266 IQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIY 325
           +     V   C     P   + WL +G   + E                   +   L++ 
Sbjct: 17  VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV---------RNQHWSLIME 67

Query: 326 NSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           +    D G + CV EN+ GS +  Y + +V
Sbjct: 68  SVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (144), Expect = 1e-11
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 3/108 (2%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P     +    +  G    L C      P ++ +W  DG+ +       + +    S   
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT- 61

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEENV 361
             + K  +L+       D+G + C A+N  G+   +    +   E NV
Sbjct: 62  -IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNV 108

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 3e-11
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 10/101 (9%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           PQI       +++ G++V L  KV+       TW+     IQ       E+    S    
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK--- 57

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                  L I  +  +  G +  + EN+ GS  +   + +V
Sbjct: 58  -------LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 91

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.0 bits (139), Expect = 4e-11
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 10/105 (9%)

Query: 255 PQIT--PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
           P +    S        G++V+L+C     PE  ++W  DG PI+NE     +      + 
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS- 62

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLK 357
                  SEL I N + +D   +VC+AEN+AG   ++  +++  K
Sbjct: 63  -------SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 1e-10
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG---TEIKKS 320
                G +V  +CKV +  +  I W+       ++       +       G   T+ +  
Sbjct: 15  ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIE 74

Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
            L I N   +D G + C+A N  G +  +  + ++
Sbjct: 75  VLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 55.9 bits (134), Expect = 2e-10
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 15/91 (16%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           + +++G++V++ CKV+ +P   + W  +  P+     +               +  S L+
Sbjct: 13  IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT---------------VTDSGLV 57

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           I      D G + C A N+ G       +++
Sbjct: 58  IKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-10
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 3/149 (2%)

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNP-IKQIKTGAFQPLSYLVTLELSKC 157
                L  + +          P   +L +L +     ++ ++    + L  L  L + K 
Sbjct: 8   HGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 158 GIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRR 217
           G+  +   AF     L  L L  N + ++S   +    L  + L  NP  C C L  L+R
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 218 WLESTKTPMAIDPI-CSVPPRLSSVTIKQ 245
           W E     +    + C     L+ +    
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 18  CPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLD-YTGNNLKTLHNEKFQKMGLVN 76
           CP +C      G   + C     +  +  +     + + Y  N     H E     GL  
Sbjct: 1   CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGE 57

Query: 77  LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI 135
           L+ + + +  +  +   AF     L  L+ S N L+++   T         L LSGNP+
Sbjct: 58  LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE-LVLSGNPL 115

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 3e-10
 Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 31/178 (17%)

Query: 47  MDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDF 106
           +  N   L   GN LK +         L NL  + L+  +IS +      GLT L +L  
Sbjct: 217 ILTNLDELSLNGNQLKDIGTLA----SLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 107 SHNVLQTVPS--------------------DTFPDYPSLMKLTLSGNPIKQIKTGAFQPL 146
             N +  +                          +  +L  LTL  N I  I       L
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSL 328

Query: 147 SYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHN 204
           + L  L  +   +  +   +   L ++ WL   +N+I+ ++    L   +  + L+  
Sbjct: 329 TKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTPLANLTR-ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 107 SHNVLQTVP-SDTFPDY--PSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE 163
           S  + Q  P +  F D      MK  L    +    +     L  + TL+  + GI+ I+
Sbjct: 3   SATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSID 60

Query: 164 DAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDC 210
                 L++L  +   NN++T I+    L T L  I +++N      
Sbjct: 61  --GVEYLNNLTQINFSNNQLTDITPLKNL-TKLVDILMNNNQIADIT 104

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P++        I EG+   L+CK  ++P       +     +++++        + +   
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 315 TEIKKSELLIYNSNIDDN-GTFVCVAENQAGSTSSNYTIRI 354
               +SEL I N N++ + G + C   +  GS  +  T+R+
Sbjct: 63  G---RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P             G    L C      P ++ TW  DG+ +     +   + A  ++  
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP---TNPKSTRAFSNSSY 59

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  EL+    +  D G + C A N  G+  ++  +R+
Sbjct: 60  VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 3e-09
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
              E  +  +   V   P   + WLF+G  +   S   +E     + E         L +
Sbjct: 11  TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH---GCLRL 67

Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                 +NG +  +A N  G  S++     +
Sbjct: 68  NQPTHVNNGNYTLLAANPFGQASASIMAAFM 98

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 4e-09
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           + + EG++    C     P   +TWL  G  +   +     +    ST E + ++ S   
Sbjct: 9   MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQAS--- 65

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                  D G +  V EN  G   + +T+ I
Sbjct: 66  -------DEGNYSVVVENSEGKQEAEFTLTI 89

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 7e-09
 Identities = 12/111 (10%), Positives = 30/111 (27%), Gaps = 19/111 (17%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKK---- 319
           + +  G  + L   +S  P   + W              +      + +    +      
Sbjct: 19  IVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLL 78

Query: 320 ---------------SELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                          S   +  +  +D G +    +N  G    N T++++
Sbjct: 79  CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.3 bits (119), Expect = 2e-08
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 11/92 (11%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
            E +EG++  ++C V +     I W   G  +  +        +                
Sbjct: 11  QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL-----------Q 59

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           I      D GT+ C     A    +   I+++
Sbjct: 60  IRGIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (118), Expect = 3e-08
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 10/106 (9%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           +P+     +  E+ EG++ +  C+V A     +TW  D   ++         +       
Sbjct: 1   QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG-- 58

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKEE 359
                   L I     DD G +   A+N  G+      + +    E
Sbjct: 59  --------LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 4e-08
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P+I        + +G +     +V   P+ +  W  +GV I+                  
Sbjct: 5   PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP-------- 56

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
            E    EL+I +   +D+ + +  A N AG TSS+  + +
Sbjct: 57  -EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 17/102 (16%)

Query: 254 EPQITPST-FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
            P I            G+ V+L C     P  +I W        ++ +S           
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS----------- 52

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                 +  L I N + +D GT+ C AEN  G  +    I I
Sbjct: 53  -----SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 8/101 (7%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P IT   F        +  +   V   P+  + W ++G  +                   
Sbjct: 5   PTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKY-----ICTKIHVTN 56

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                  L + N    +NG +  +A+N+ G      +   +
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 14/101 (13%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           +P         E   G ++   C  S  P   + WL DG P+ +++              
Sbjct: 1   QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR------------- 47

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
             E+   EL      ++D+G + CVAEN+ G+  ++  + +
Sbjct: 48  -IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 6/112 (5%)

Query: 78  QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQ 137
           + ++L+   ++V+       L  +  LD SHN L             L  L  S N ++ 
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALEN 57

Query: 138 IKTGAFQPLSYLVTLELSKCGIEVIED-AAFVGLDSLEWLKLDNNKITTISG 188
           +       L  L  L L    ++        V    L  L L  N +    G
Sbjct: 58  VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 28/125 (22%)

Query: 52  QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLV--------- 102
           +VL     +L  L + +     L+ +  + LS  R+  +   A   L  L          
Sbjct: 1   RVLHLAHKDLTVLCHLE----QLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL 55

Query: 103 -------------DLDFSHNVLQTVPS-DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSY 148
                        +L   +N LQ   +       P L+ L L GN + Q +    +    
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 149 LVTLE 153
           L ++ 
Sbjct: 116 LPSVS 120

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESM--SASESHAVYSTEEG 314
           ++P+   +E+  G  + L+C V+        W ++G  I  +                + 
Sbjct: 5   VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 64

Query: 315 TEIKKSELLIYNSNIDDNGT-FVCVAENQAGSTSSNYTIR 353
                + L I           F C A+N  G  ++   + 
Sbjct: 65  RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 104

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           L + +G+ V L C V  + E  I W+ DG  +QN           +     +        
Sbjct: 6   LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS-------- 57

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSN 349
           + +    D G + C  E+   +  S 
Sbjct: 58  LKSVERSDAGRYWCQVEDGGETEISQ 83

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 4e-07
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 57  TGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID--SKAFRGLTNLVDLDFSHNVLQTV 114
             +++        + +    L  + LS  R+  +D  S   +   NL  L+ S N L++ 
Sbjct: 49  RRSSMAATLRIIEENIP--ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 106

Query: 115 PSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTL 152
                     L +L L GN +          +S +   
Sbjct: 107 RELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER 144

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 39  SLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGL 98
           + + ++E   P    L+ + N L  L +         NL+ + LS   +           
Sbjct: 55  ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 114

Query: 99  TNLVDLDFSHNVLQTVPSDTFPDYPSLMKL-----TLSGNPIK 136
             L +L    N L     D      ++ +       L G+ + 
Sbjct: 115 LKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELP 157

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.4 bits (109), Expect = 4e-07
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 14/98 (14%)

Query: 255 PQIT---PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYST 311
           P        T + E    + V+L C+  A P A   W  +G  ++    S          
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV----- 59

Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSN 349
                     ++       D G++ CVA N  G+  S 
Sbjct: 60  ------AGDLVISNPVKAKDAGSYQCVATNARGTVVSR 91

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 46.8 bits (110), Expect = 4e-07
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P  T +   +E+ EG      CKV   P+ ++ W  D  P++       +          
Sbjct: 9   PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD-------- 60

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
            E     L I     DD+  + C A N  G  +    + +
Sbjct: 61  -EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 10/102 (9%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           PQ       +  + G    + C   + P     +  +G  +          H   S    
Sbjct: 6   PQYVSKD--MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG--- 60

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
                  LL   +  +D G + C  +N  G    +     V+
Sbjct: 61  -----KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAK--ITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE 321
            E+  G +++   +V+     K  +   F G  +   S          S +  +++   E
Sbjct: 14  GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73

Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           L I ++     G + C    +     SN+ + +
Sbjct: 74  LHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 81  YLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKT 140
                  S           +L +L+ S+N L  +P+      P L +L  S N + ++  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPE 321

Query: 141 GAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDN 180
                   L  L +    +    D      +S+E L++++
Sbjct: 322 L----PQNLKQLHVEYNPLREFPD----IPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 8e-06
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 72  MGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS 131
               +L+++ +S  ++  + +        L  L  S N L  VP        +L +L + 
Sbjct: 281 DLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPELP----QNLKQLHVE 332

Query: 132 GNPIKQI 138
            NP+++ 
Sbjct: 333 YNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 15/116 (12%), Positives = 36/116 (31%), Gaps = 10/116 (8%)

Query: 1   MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNN 60
           +     L  ++  +  +                   + + I  +  + P+ + L+ + N 
Sbjct: 236 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 295

Query: 61  LKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS 116
           L  L            L+++  S   ++ +         NL  L   +N L+  P 
Sbjct: 296 LIELPAL------PPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 106 FSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDA 165
           +  N             PSL +L +S N + ++          L  L  S   +  + + 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPEL 322

Query: 166 AFVGLDSLEWLKLDNNKITTI 186
                 +L+ L ++ N +   
Sbjct: 323 ----PQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 7/79 (8%)

Query: 130 LSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS 189
              N               L  L +S   +  +          LE L    N +  +   
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE- 321

Query: 190 NILPTGLHGIDLHHNPWTC 208
             LP  L  + + +NP   
Sbjct: 322 --LPQNLKQLHVEYNPLRE 338

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLI 324
           E +      +   V   P   + WL +G P++   +   E +      EG       LL 
Sbjct: 13  EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGC------LLF 66

Query: 325 YNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                 +NG +  +A+N  G+ +       +
Sbjct: 67  NKPTHYNNGNYTLIAKNPLGTANQTINGHFL 97

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 13/104 (12%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P +      +  +E     L C +    +             N     +       +   
Sbjct: 3   PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS--- 59

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
                  L+       D G + C AE  AG  SS     I  ++
Sbjct: 60  -------LVFLRPQASDEGHYQCFAETPAGVASSR---VISFRK 93

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 7/106 (6%)

Query: 253 CEPQITPSTF-YLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYS 310
           C+ Q+         I  G    L C V        +TW         +           S
Sbjct: 1   CDVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLE-----DRQTS 55

Query: 311 TEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVL 356
            +E   I    L       +DNG++ C A  Q+    S+ T   V 
Sbjct: 56  WKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNS 327
              NV+     + +P  ++ W      +     S   + + +      +     L IYN 
Sbjct: 9   VYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL 67

Query: 328 NIDDNGTFVCVAENQAGSTSSNYTI 352
              D   +   + N   +      +
Sbjct: 68  TSSDEDEYEMESPNITDTMKFFLYV 92

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
            ++ +G  + L  +++   +A++ WL +G  IQ                      K  L 
Sbjct: 16  YQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFES---------IGAKRTLT 65

Query: 324 IYNSNIDDNGTFVCVAENQAGSTS 347
           I   ++ D+  + CV   +  ST 
Sbjct: 66  ISQCSLADDAAYQCVVGGEKCSTE 89

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
             +  S   + I E   V L C  S          +         +    +    S E+ 
Sbjct: 5   VTVHSSEPEVRIPENNPVKLSCAYSGFSSP--RVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI-VL 356
                + +   +   +D GT+ C+   + G++     +++ VL
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
             +  +   +++ E +++ L C  S     ++ W F            S+  A Y+    
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR-- 59

Query: 315 TEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                S +   +    DNG + C+   + G      +I + 
Sbjct: 60  VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 7/92 (7%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           +E+  G+  +  C       A             ++               +        
Sbjct: 11  VEVNAGQFATFQCSAIGRTVAGDRLWLQ-GIDVRDAPLKEIKVTSSRRFIAS------FN 63

Query: 324 IYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
           + N+   D G + C+   + G   SNY   +V
Sbjct: 64  VVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 12/101 (11%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           +P+I  ++  ++I+ G   +L       P+   TW                         
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE----------LLV 51

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
             +   + +   ++   D+G +    +N+ G   + + + +
Sbjct: 52  DAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 11/93 (11%)

Query: 265 EIQEGKNVSLLCKVS---AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSE 321
            +  GK+ ++ C+V     +    +        +  E+   +      +T          
Sbjct: 13  LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATAT-------- 64

Query: 322 LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                   D +  F C+A     S   N   + 
Sbjct: 65  FNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 25/103 (24%)

Query: 255 PQITPSTF--YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTE 312
           P++            E    + +C+    P  ++  L DG                    
Sbjct: 3   PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE------------ 50

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                            D  GT++C A +  G  +   T+ ++
Sbjct: 51  -----------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 82

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 16/92 (17%)

Query: 264 LEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSEL 322
             ++ G +V+ +C   S  P   + W                                 L
Sbjct: 12  QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM---------------DFNGIL 56

Query: 323 LIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
            I N    D GT+VC   N         T+ +
Sbjct: 57  TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
                G+ V L C+VS   +A + W  +G  I     S              E KK  L+
Sbjct: 10  TTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIR--------VEGKKHILI 60

Query: 324 IYNSNIDDNGTFVCVAENQAGS 345
           I  +   D   +  +      S
Sbjct: 61  IEGATKADAAEYSVMTTGGQSS 82

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 8e-05
 Identities = 10/69 (14%), Positives = 20/69 (28%)

Query: 65  HNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPS 124
                   G    +        +  + +  F G +  V LD S   + ++PS    +   
Sbjct: 167 EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 226

Query: 125 LMKLTLSGN 133
           L   +    
Sbjct: 227 LRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 18 CPTS-CICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKM 72
          C    C C      +   C    +  +   +  N   L +    L+ +    F   
Sbjct: 1  CHHRICHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGF 52

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 8e-04
 Identities = 16/78 (20%), Positives = 30/78 (38%)

Query: 80  IYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIK 139
           ++L++  I  I + AF G          +N L+ +P+D F      + L +S   I  + 
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 140 TGAFQPLSYLVTLELSKC 157
           +   + L  L        
Sbjct: 218 SYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 15/79 (18%), Positives = 27/79 (34%)

Query: 104 LDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE 163
           L  + N +Q + +  F             N ++++    F   S  V L++S+  I  + 
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 164 DAAFVGLDSLEWLKLDNNK 182
                 L  L      N K
Sbjct: 218 SYGLENLKKLRARSTYNLK 236

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 8e-05
 Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 264 LEIQEGKNVSLLCKVSAIPEA---KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKS 320
             ++ G++++ + KV A        I W          S +        + E  + +   
Sbjct: 10  GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMD-LASKAGKHLQLKETFERHSRVYTF 68

Query: 321 ELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
           E+ I  +  +  G + C    +    S ++ + +
Sbjct: 69  EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 28/191 (14%), Positives = 52/191 (27%), Gaps = 29/191 (15%)

Query: 1   MMYWIFLIATIIKIVSACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNN 60
           +      +     +   C    +           C + S +          Q+ +    +
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 354

Query: 61  LKTLHNEKFQKMGLVNLQKIYLSRCRISVID----SKAFRGLTNLVDLDFSHNVLQTVPS 116
                  +        L+ ++L+ C +S       +       +L +LD S+N       
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN------- 407

Query: 117 DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWL 176
                      L  +G  I Q+     QP   L  L L                D L+ L
Sbjct: 408 ----------CLGDAG--ILQLVESVRQPGCLLEQLVLYDIYWSEE------MEDRLQAL 449

Query: 177 KLDNNKITTIS 187
           + D   +  IS
Sbjct: 450 EKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 10/93 (10%)

Query: 50  NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVID----SKAFRGLTNLVDLD 105
           + Q LD     L      +     L   Q + L  C ++       S A R    L +L+
Sbjct: 3   DIQSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 106 FSHNVLQTVPSDTFPD-----YPSLMKLTLSGN 133
              N L  V               + KL+L   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 10/94 (10%)

Query: 75  VNLQKIYLSRCRISVID-SKAFRGLTNLVDLDFSHNVLQTVP----SDTFPDYPSLMKLT 129
           +++Q + +    +S    ++    L     +      L        S      P+L +L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 130 LSGNPI-----KQIKTGAFQPLSYLVTLELSKCG 158
           L  N +       +  G   P   +  L L  C 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 64  LHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYP 123
           L  +  Q    V  +++ L   +I VI++     L     +DFS N ++ +    FP   
Sbjct: 7   LIEQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDG--FPLLR 63

Query: 124 SLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVG-LDSLEWLKLDNNK 182
            L  L ++ N I +I  G  Q L  L  L L+   +  + D   +  L SL +L +  N 
Sbjct: 64  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123

Query: 183 ITTISG 188
           +T    
Sbjct: 124 VTNKKH 129

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 91  DSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLV 150
            +  +       +LD     +  +  +          +  S N I+++    F  L  L 
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLK 66

Query: 151 TLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS--GSNILPTGLHGIDLHHNPWTC 208
           TL ++   I  I +     L  L  L L NN +  +           L  + +  NP T 
Sbjct: 67  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126

Query: 209 DC 210
             
Sbjct: 127 KK 128

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 6e-04
 Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 11/101 (10%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
            P +        +  G +V L C+V      +  W+   +      M +           
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLP------- 54

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI 354
                    L   ++  +     C AEN  G    +  + +
Sbjct: 55  ----SLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 5/101 (4%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEG 314
           P I+ +        G+   + C + + P            +     S   +    STEEG
Sbjct: 8   PIISSTQTQ-HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 66

Query: 315 TEIKKSELLIYNSNID-DNGTFVCVAENQAGSTSSNYTIRI 354
                S L I N         + C A N  GS +    ++ 
Sbjct: 67  V---ISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 104

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 254 EPQITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEE 313
           +  I PS    EI  G++   LC+V+   + K    F     +        S      + 
Sbjct: 2   QVDIVPS--QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 59

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS 348
            T          N+NIDD G + CV   + G+ S 
Sbjct: 60  STLTIY------NANIDDAGIYKCVVTAEDGTQSE 88

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 13/107 (12%)

Query: 253 CEPQITPSTFYLEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYST 311
           C+ +       L     +     C ++    +  ITW  D       +  AS  H     
Sbjct: 3   CKEREEKII--LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 60

Query: 312 EEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIVLKE 358
                     L    + ++D+G + CV  N +       + + V  E
Sbjct: 61  ----------LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENE 97

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 15/101 (14%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAI--PEAKITWLFDGVPIQNESMSASESHAVYSTE 312
           P ++      E       S++C ++     +  + W  DG   QN  ++   S     ++
Sbjct: 6   PTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN---SWTDQDSK 62

Query: 313 EGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIR 353
           + T    S L +     + + ++ C A ++  ++    +  
Sbjct: 63  DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFN 103

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 13/113 (11%)

Query: 256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWL-------------FDGVPIQNESMSA 302
           ++      +    G    L C++S    A    +             +     Q+   + 
Sbjct: 4   RVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAP 63

Query: 303 SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRIV 355
                    +E     K  L I N    D G + C   + +    +   +++ 
Sbjct: 64  EYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 14/93 (15%)

Query: 255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEE 313
           P    +   L    G +V+L C      + A + W+       +     +          
Sbjct: 7   PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG------- 59

Query: 314 GTEIKKSELLIYNSNIDDNGTFVCVAENQAGST 346
                   LL+ +  + D+G + C    +   T
Sbjct: 60  ------RRLLLRSVQLHDSGNYSCYRAGRPAGT 86

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 11/84 (13%)

Query: 264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELL 323
           +E+  G+      ++S  P+    W   G P+                          L+
Sbjct: 11  VEVFVGETAHFEIELSE-PDVHGQWKLKGQPLTASPDCEIIEDGKKHI----------LI 59

Query: 324 IYNSNIDDNGTFVCVAENQAGSTS 347
           ++N  +   G     A N   + +
Sbjct: 60  LHNCQLGMTGEVSFQAANAKSAAN 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	767
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.95
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.59
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.54
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.53
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.49
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.47
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.39
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.26
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.07
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.97
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.64
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.55
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.54
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.53
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.48
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.46
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.45
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.45
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.41
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.4
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.4
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.37
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.36
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.34
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.33
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.32
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.31
d2avga1	110	Cardiac myosin binding protein C, different domain	98.3
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.29
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.28
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.27
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.26
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.26
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.23
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.22
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.22
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.22
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.21
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.21
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.2
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.19
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.18
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.16
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.15
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.14
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.12
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.08
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.07
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.02
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.01
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	97.98
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.98
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	97.93
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	97.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.93
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.86
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	97.83
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.82
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.77
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.76
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.76
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.75
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.71
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	97.61
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.57
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.55
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.55
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.52
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.47
d1pd6a_	94	Cardiac myosin binding protein C, different domain	97.47
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.47
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.12
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.04
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	96.99
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.7
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	96.4
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	95.93
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	95.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.81
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.51
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	95.26
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	95.03
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	94.94
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.82
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	94.76
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	94.73
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	94.51
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.49
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	94.49
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	94.44
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	94.18
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	94.16
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	94.09
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	93.97
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	93.96
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	93.92
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	93.85
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	93.8
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	93.71
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	93.71
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	93.7
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	93.67
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	93.64
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	93.61
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	93.59
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	93.56
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	93.51
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	93.35
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	93.33
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	93.31
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	93.26
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	93.23
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	93.2
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	93.19
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	93.15
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	93.12
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	93.08
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	93.02
d8faba1	103	Immunoglobulin light chain lambda variable domain,	93.01
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	93.0
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	93.0
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	92.98
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	92.97
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	92.93
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	92.87
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	92.84
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	92.83
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	92.76
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	92.72
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	92.71
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	92.67
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	92.63
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	92.63
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	92.62
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	92.55
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	92.4
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	92.4
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	92.4
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	92.37
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	92.37
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	92.35
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	92.34
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	92.33
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	92.32
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	92.31
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	92.27
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	92.21
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	92.17
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	92.15
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	92.15
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	92.11
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	92.09
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	92.09
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	91.96
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	91.95
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	91.92
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	91.85
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	91.84
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	91.84
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	91.79
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	91.78
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	91.69
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	91.67
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	91.55
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	91.44
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	91.38
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	91.35
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	91.35
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	91.33
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	91.2
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	91.17
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	91.09
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	91.09
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	91.03
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	90.96
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	90.95
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	90.93
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	90.92
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	90.91
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	90.83
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	90.73
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	90.68
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	90.66
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	90.65
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	90.59
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	90.51
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	90.4
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	90.34
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	90.28
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	90.13
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	90.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	89.88
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	89.73
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	89.56
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	88.81
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	88.78
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	88.36
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	88.15
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	87.87
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	87.8
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	87.77
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	87.71
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	87.66
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	87.45
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	87.3
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	87.26
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	87.17
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	86.95
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	86.9
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	86.52
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	86.34
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	86.25
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	85.99
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	85.93
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	85.12
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	84.89
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	84.86
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	84.29
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	83.98
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	83.64
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	83.48
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	83.48
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	83.42
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	82.84
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	82.76
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	82.51
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	82.08
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	81.69
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	81.59
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	81.27
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	80.14

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=258.92  Aligned_cols=231  Identities=30%  Similarity=0.523  Sum_probs=175.5

Q ss_pred             CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc------
Q psy12044         17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI------   90 (767)
Q Consensus        17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i------   90 (767)
                      .||..|.|. ......|.|++.+|+.+|..++.++++|+|++|+|+.+++..|..  +++|+.|++++|+|..+      
T Consensus         1 ~cp~~C~C~-~~~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~--l~~L~~L~ls~n~l~~i~~~~~~   77 (284)
T d1ozna_           1 PCPGACVCY-NEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFT   77 (284)
T ss_dssp             CCCTTCEEE-CSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTT
T ss_pred             CcCCCCEEc-CCCCeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhc--ccccccccccccccccccccccc
Confidence            599999994 344678999999999999999999999999999999999888874  67777777777655422      


Q ss_pred             -------------------CcccccCCCCCCEEEccCC------------------------CCCCCCCCCCCCCCCCcE
Q psy12044         91 -------------------DSKAFRGLTNLVDLDFSHN------------------------VLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        91 -------------------~p~~f~~L~~L~~L~Ls~N------------------------~Lt~l~p~~f~~l~~L~~  127 (767)
                                         .+.+|.++++|++|+|++|                        .|+++++..|..+++|+.
T Consensus        78 ~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~  157 (284)
T d1ozna_          78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH  157 (284)
T ss_dssp             TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhh
Confidence                               1334555566666666555                        444554555555666666


Q ss_pred             EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCC-CCCCcccccCCCCCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI-LPTGLHGIDLHHNPW  206 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~-~~~~L~~L~Ls~N~l  206 (767)
                      |+|++|.|+.+++.+|.++++|+.|++++|.++++.+..|..+++|+.|++++|.++.+++..+ ...+|+.|+|++|+|
T Consensus       158 L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            6666666666666666667777777777777777777777777777777777777776665433 557899999999999


Q ss_pred             CchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccc
Q psy12044        207 TCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDEL  251 (767)
Q Consensus       207 ~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l  251 (767)
                      .|+|.+.|+..|++..... ..+..|+.|..++|..+.+++.+++
T Consensus       238 ~C~C~~~~l~~~l~~~~~~-~~~~~C~~p~~l~g~~l~~l~~~~l  281 (284)
T d1ozna_         238 VCDCRARPLWAWLQKFRGS-SSEVPCSLPQRLAGRDLKRLAANDL  281 (284)
T ss_dssp             ECSGGGHHHHHHHHHCCSE-ECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred             CCCccchHHHHHHHhCcCC-CCceEeCCchHHcCCccccCCHHHC
Confidence            9999999999999876443 3678899999999999999988876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-27  Score=247.41  Aligned_cols=198  Identities=27%  Similarity=0.436  Sum_probs=168.9

Q ss_pred             CCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCC
Q psy12044         20 TSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLT   99 (767)
Q Consensus        20 ~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~   99 (767)
                      +.|.|.+..+...|+|++.+|+.||+++++++++|+|++|.|+++++..|.+  +++|+.|+|++|+|+.+.  .+..++
T Consensus         2 ~~C~~~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~--l~~L~~L~L~~N~l~~l~--~~~~l~   77 (266)
T d1p9ag_           2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQ--VDGTLP   77 (266)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTT--CTTCCEEECTTSCCCEEE--CCSCCT
T ss_pred             CccEEcccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhc--cccccccccccccccccc--cccccc
Confidence            4699988777788999999999999999999999999999999999998984  899999999999998764  356777


Q ss_pred             CCCEEEccCCCCCCCCCCCCCCCCC------------------------CcEEECCCCcCcccccCCcCCCCCccEEecc
Q psy12044        100 NLVDLDFSHNVLQTVPSDTFPDYPS------------------------LMKLTLSGNPIKQIKTGAFQPLSYLVTLELS  155 (767)
Q Consensus       100 ~L~~L~Ls~N~Lt~l~p~~f~~l~~------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  155 (767)
                      +|+.|+|++|+|+... ..+..+++                        |+.|++++|.++.+++..+..+++|+.|+++
T Consensus        78 ~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          78 VLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSCCSSCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccccccccccccccc-cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccc
Confidence            7888888777776654 23444444                        4555555556666666667778899999999


Q ss_pred             CCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccC
Q psy12044        156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLEST  222 (767)
Q Consensus       156 ~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~  222 (767)
                      +|+|+++++..|..+++|+.|+|++|+|+.||..++...+|+.|+|++|+|.|+|.+.|+..|+++.
T Consensus       157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~  223 (266)
T d1p9ag_         157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (266)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             cccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=6e-25  Score=217.34  Aligned_cols=186  Identities=28%  Similarity=0.519  Sum_probs=128.8

Q ss_pred             CCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCC-CCchhhhccCCCCccEEEccCCCCCccCcccc
Q psy12044         17 ACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKT-LHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF   95 (767)
Q Consensus        17 ~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~-l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f   95 (767)
                      -||+.|.|.+    .+|+|++.+|+.||.++++++++|+|++|.|+. +....|..  +++|+.|+|++|.+..+.+..|
T Consensus         1 ~CP~~C~C~~----~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~--l~~L~~L~L~~N~i~~~~~~~~   74 (192)
T d1w8aa_           1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGR--LPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             CCCTTSEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGG--CTTCCEEECCSSCCCCBCTTTT
T ss_pred             CcCCCCEEcC----CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCC--CceEeeeecccccccccccccc
Confidence            3999999986    469999999999999998888888888888865 44444442  4555555555555555544444


Q ss_pred             cCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCe
Q psy12044         96 RGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEW  175 (767)
Q Consensus        96 ~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~  175 (767)
                      .                        .+++|+.|+|++|+|+.+++.+|.++++|+.|+|++|.|+.+++.+|..++    
T Consensus        75 ~------------------------~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~----  126 (192)
T d1w8aa_          75 E------------------------GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN----  126 (192)
T ss_dssp             T------------------------TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT----
T ss_pred             c------------------------cccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCc----
Confidence            4                        445555555555555555555555555555555555555555554444333    


Q ss_pred             eeccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCCccCCCCCCCCCCCCCcccccccccccCCC
Q psy12044        176 LKLDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPMAIDPICSVPPRLSSVTIKQLSIDELACEP  255 (767)
Q Consensus       176 L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~~~~~~C~~p~~l~g~~i~~l~~~~l~C~P  255 (767)
                                         +|+.|+|++|+|.|+|.+.|+..|+..... ......|..|..+++..+.+++.+++.|.+
T Consensus       127 -------------------~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l-~~~~~~c~~p~~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         127 -------------------SLTSLNLASNPFNCNCHLAWFAEWLRKKSL-NGGAARCGAPSKVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             -------------------TCCEEECTTCCBCCSGGGHHHHHHHHHHCC-SGGGCBBCSSTTTTTSBGGGSCTTTCCCCC
T ss_pred             -------------------ccccccccccccccccchHHHhhhhhhhcc-cCCCeEeCCChhhcCCEeeecCHhhCcCCC
Confidence                               345566778899999999999999876543 235678999999999999999999999964


Q ss_pred             C
Q psy12044        256 Q  256 (767)
Q Consensus       256 ~  256 (767)
                      .
T Consensus       187 ~  187 (192)
T d1w8aa_         187 E  187 (192)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.3e-21  Score=206.54  Aligned_cols=186  Identities=26%  Similarity=0.466  Sum_probs=140.3

Q ss_pred             cCCCCCceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccc
Q psy12044         16 SACPTSCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAF   95 (767)
Q Consensus        16 ~~CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f   95 (767)
                      ..||..|.|.|    ..|+|++.+|+.+|.++++++++|+|++|+|+.+++..|.+  +++|+.|++++|.+..+.+.+|
T Consensus         2 ~~~p~~c~c~~----~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~--l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_           2 PVCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN--LKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             CCCCTTCEEET----TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTT--CTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCCCCCCEecC----CEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhc--cccccccccccccccccchhhh
Confidence            47999999986    45999999999999999999999999999999999988885  8999999999999999999999


Q ss_pred             cCCCCCCEEEccCCCCCCCCCCC-----------------------------------------------CCCCCCCcEE
Q psy12044         96 RGLTNLVDLDFSHNVLQTVPSDT-----------------------------------------------FPDYPSLMKL  128 (767)
Q Consensus        96 ~~L~~L~~L~Ls~N~Lt~l~p~~-----------------------------------------------f~~l~~L~~L  128 (767)
                      .++++|+.|+|++|+|+.++...                                               |..+++|+.+
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l  155 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  155 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             hCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcc
Confidence            99999999999999888665321                                               1123344444


Q ss_pred             ECCCCcCc---------------------ccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCcccccc
Q psy12044        129 TLSGNPIK---------------------QIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTIS  187 (767)
Q Consensus       129 ~Ls~N~l~---------------------~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip  187 (767)
                      ++++|.++                     ...+..|..++.++.|++++|.++++.+..|.++++|+.|+|++|+|+.||
T Consensus       156 ~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp  235 (305)
T d1xkua_         156 RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP  235 (305)
T ss_dssp             ECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC
T ss_pred             ccccCCccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccc
Confidence            44444443                     333444555556666666666666666666666666666666666666666


Q ss_pred             CCCCCCCCcccccCCCCCCC
Q psy12044        188 GSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       188 ~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      ..+..+++|+.|+|++|++.
T Consensus       236 ~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         236 GGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccCCCEEECCCCccC
Confidence            65555666666666666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=5.1e-18  Score=179.36  Aligned_cols=182  Identities=24%  Similarity=0.304  Sum_probs=123.0

Q ss_pred             CCceecccCCeeEEEecC--------------CCcc---ccccCC--CCCccEEEeeC-CCCCCCCchhhhccCCCCccE
Q psy12044         20 TSCICKWKGGKQTVECVN--------------KSLI---TVVEGM--DPNTQVLDYTG-NNLKTLHNEKFQKMGLVNLQK   79 (767)
Q Consensus        20 ~~C~C~~~g~~~~v~C~~--------------~~L~---~iP~~l--~~~L~~L~Ls~-N~L~~l~~~~f~~~~L~~L~~   79 (767)
                      ..|.|.|.|    |.|..              .++.   .+|..+  .++|++|+|++ |.+++..|..|.+  |++|++
T Consensus        32 d~C~~~w~g----v~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~--L~~L~~  105 (313)
T d1ogqa_          32 DCCNRTWLG----VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--LTQLHY  105 (313)
T ss_dssp             CTTTTCSTT----EEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG--CTTCSE
T ss_pred             CCCCCcCCC----eEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc--ccccch
Confidence            457778988    77753              2222   355555  57888888886 7787666666764  788888


Q ss_pred             EEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcC---------------
Q psy12044         80 IYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQ---------------  144 (767)
Q Consensus        80 L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~---------------  144 (767)
                      |+|++|+|.++.+..+..+.+|+.|+++.|.+.+..|..|..++.|+.+++++|.+.+..+..+.               
T Consensus       106 L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             hhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccc
Confidence            88888888887777777777777777777777776667777777777777777766544333222               


Q ss_pred             ---------------------------------CCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccc-cccCCC
Q psy12044        145 ---------------------------------PLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKIT-TISGSN  190 (767)
Q Consensus       145 ---------------------------------~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt-~ip~~~  190 (767)
                                                       .+.+|+.|++++|.+.+.++ .+..+++|+.|+|++|+|+ .+|..+
T Consensus       186 l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l  264 (313)
T d1ogqa_         186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHH
Confidence                                             23344455555555554443 3555677777888888887 567666


Q ss_pred             CCCCCcccccCCCCCCCc
Q psy12044        191 ILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       191 ~~~~~L~~L~Ls~N~l~C  208 (767)
                      ..+++|+.|+|++|.+++
T Consensus       265 ~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         265 TQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             GGCTTCCEEECCSSEEEE
T ss_pred             hCCCCCCEEECcCCcccc
Confidence            667778888888887764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.7e-17  Score=166.83  Aligned_cols=183  Identities=22%  Similarity=0.355  Sum_probs=134.9

Q ss_pred             CCC-CceecccCCeeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCc-cCcccc
Q psy12044         18 CPT-SCICKWKGGKQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISV-IDSKAF   95 (767)
Q Consensus        18 CP~-~C~C~~~g~~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~-i~p~~f   95 (767)
                      |++ .|.|..    ..++|++.+++.+|+.++.++++|+|++|.|+.++...|..  +++|++|+|++|.+.. +.+.+|
T Consensus         1 ~~~~~C~C~~----~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~--l~~L~~L~ls~n~~~~~i~~~~f   74 (242)
T d1xwdc1           1 CHHRICHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSG--FGDLEKIEISQNDVLEVIEADVF   74 (242)
T ss_dssp             CCCSSEEECS----SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTT--CTTCCEEEEESCTTCCEECSSSE
T ss_pred             CcCCcCCCcC----CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhc--cchhhhhhhccccccceeecccc
Confidence            788 599984    56999999999999999999999999999999999988874  8999999999998876 556789


Q ss_pred             cCCCCCCEEEccC-CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCC-cCCCCCccEEeccCCCccccchhhhcCCC-C
Q psy12044         96 RGLTNLVDLDFSH-NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGA-FQPLSYLVTLELSKCGIEVIEDAAFVGLD-S  172 (767)
Q Consensus        96 ~~L~~L~~L~Ls~-N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~-~  172 (767)
                      .+++++++|.+.. |.+....+..|..+++|+.|++++|.+....... +..+..|..+...++.+..+....|..+. .
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~  154 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE  154 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccc
Confidence            9999999998764 6788888888999999999999999887665422 22334444444555555555555554443 4


Q ss_pred             CCeeeccCCccccccCCCCCCCCcccc-cCCCCCC
Q psy12044        173 LEWLKLDNNKITTISGSNILPTGLHGI-DLHHNPW  206 (767)
Q Consensus       173 L~~L~Ls~N~Lt~ip~~~~~~~~L~~L-~Ls~N~l  206 (767)
                      +..|++++|+++.++...+...++..+ ++.+|.+
T Consensus       155 l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l  189 (242)
T d1xwdc1         155 SVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL  189 (242)
T ss_dssp             CEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC
T ss_pred             ceeeecccccccccccccccchhhhcccccccccc
Confidence            555555555555555554444443333 3344444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.7e-17  Score=154.80  Aligned_cols=143  Identities=20%  Similarity=0.300  Sum_probs=121.2

Q ss_pred             CCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCC-cCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeee
Q psy12044         99 TNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGN-PIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLK  177 (767)
Q Consensus        99 ~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~  177 (767)
                      ...+.++.+++.+...+ ..+..+++|+.|+|++| .|+.+.+.+|.++++|+.|+|++|+|+.+.+.+|..+++|+.|+
T Consensus         8 ~~~~~l~c~~~~~~~~p-~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCCTTT-TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCccCc-ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34556778888777665 45777889999999766 58999888899999999999999999999999999999999999


Q ss_pred             ccCCccccccCCCCCCCCcccccCCCCCCCchhhhhhhhhhhccCCCCC-ccCCCCCCCCCCCCCc
Q psy12044        178 LDNNKITTISGSNILPTGLHGIDLHHNPWTCDCLLIGLRRWLESTKTPM-AIDPICSVPPRLSSVT  242 (767)
Q Consensus       178 Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C~c~l~~l~~~l~~~~~~~-~~~~~C~~p~~l~g~~  242 (767)
                      |++|+|+.++...+...+|+.|+|++|+|.|+|.+.|+..|+....... .....|..|..+++.+
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence            9999999999988877789999999999999999999999997654333 3677899888877754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.1e-15  Score=158.87  Aligned_cols=173  Identities=25%  Similarity=0.318  Sum_probs=149.1

Q ss_pred             cCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCC
Q psy12044         36 VNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQ  112 (767)
Q Consensus        36 ~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt  112 (767)
                      ....+..++...   .++|++|+|++|.+..+....+..  +.+|+.+++++|.|+.+.+.+|..+.+|+.|+|++|+|+
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG--LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccch--hcccchhhhccccccccChhHhccccchhhcccccCccc
Confidence            344555554433   468999999999999988888874  789999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCC
Q psy12044        113 TVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNIL  192 (767)
Q Consensus       113 ~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~  192 (767)
                      .+++..|..+++|+.|++++|.++++.+..|..+++|+.|++++|.+.++++..|..+.+|+.|+|++|.+..-......
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l  246 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL  246 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999854332222


Q ss_pred             CCCcccccCCCCCCCchh
Q psy12044        193 PTGLHGIDLHHNPWTCDC  210 (767)
Q Consensus       193 ~~~L~~L~Ls~N~l~C~c  210 (767)
                      ...++.+....+.+.|..
T Consensus       247 ~~~l~~~~~~~~~~~C~~  264 (284)
T d1ozna_         247 WAWLQKFRGSSSEVPCSL  264 (284)
T ss_dssp             HHHHHHCCSEECCCBEEE
T ss_pred             HHHHHhCcCCCCceEeCC
Confidence            234566777778888854

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=1.6e-14  Score=151.35  Aligned_cols=175  Identities=21%  Similarity=0.286  Sum_probs=143.1

Q ss_pred             eEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhc------------------------cCCCCccEEEccCCC
Q psy12044         31 QTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQK------------------------MGLVNLQKIYLSRCR   86 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~------------------------~~L~~L~~L~Ls~N~   86 (767)
                      ..+++.+.++..+|..+...+..|++.+|.+..+....+..                        .++++|+.+++++|.
T Consensus        82 ~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            46777777777777777777777777777777665544322                        045678888888888


Q ss_pred             CCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhh
Q psy12044         87 ISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAA  166 (767)
Q Consensus        87 L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~  166 (767)
                      +..+...   .+++|+.|++++|.++...+..|..++.++.|++++|.++++.+..|.++++|++|+|++|.|+.++. .
T Consensus       162 l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-~  237 (305)
T d1xkua_         162 ITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-G  237 (305)
T ss_dssp             CCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-T
T ss_pred             ccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc-c
Confidence            8776432   35789999999999998888899999999999999999999999999999999999999999998854 7


Q ss_pred             hcCCCCCCeeeccCCccccccCCCCC-------CCCcccccCCCCCCCch
Q psy12044        167 FVGLDSLEWLKLDNNKITTISGSNIL-------PTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       167 ~~~l~~L~~L~Ls~N~Lt~ip~~~~~-------~~~L~~L~Ls~N~l~C~  209 (767)
                      |..+++|+.|+|++|+|+.|+...+.       ..+|+.|+|++|+|.+.
T Consensus       238 l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             cccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            89999999999999999999766543       36788999999999853

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.6e-14  Score=146.10  Aligned_cols=150  Identities=25%  Similarity=0.312  Sum_probs=111.6

Q ss_pred             eeEEEecCCCccccccCC---CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCC-------------------
Q psy12044         30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRI-------------------   87 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L-------------------   87 (767)
                      -+.++.+++.+..+|...   .++|++|+|++|+|+.++..  .  .+++|+.|+|++|+|                   
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~--~--~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--G--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--S--CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             CCEEECcCCcCCCcCHHHhhccccccccccccccccccccc--c--cccccccccccccccccccccccccccccccccc
Confidence            456777777777766432   45666777777766655432  2  245555555555554                   


Q ss_pred             ----CccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccc
Q psy12044         88 ----SVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIE  163 (767)
Q Consensus        88 ----~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~  163 (767)
                          ..+.+..+..+.+|+.|++++|.++.+++..+..+++|+.|++++|+|+++++..|..+++|+.|+|++|+|+.++
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp  188 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccC
Confidence                4444455556666666777777777788888888999999999999999999999999999999999999999776


Q ss_pred             hhhhcCCCCCCeeeccCCccc
Q psy12044        164 DAAFVGLDSLEWLKLDNNKIT  184 (767)
Q Consensus       164 ~~~~~~l~~L~~L~Ls~N~Lt  184 (767)
                      .. +..+.+|+.|+|++|.+.
T Consensus       189 ~~-~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         189 KG-FFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TT-TTTTCCCSEEECCSCCBC
T ss_pred             hh-HCCCCCCCEEEecCCCCC
Confidence            54 567899999999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=2.9e-14  Score=141.70  Aligned_cols=158  Identities=25%  Similarity=0.354  Sum_probs=75.2

Q ss_pred             EEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCC
Q psy12044         32 TVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNV  110 (767)
Q Consensus        32 ~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~  110 (767)
                      .+++.+..+..++. ..+++|++|+|++|.|+++.+  +.  .+++|+.|++++|+|+.+.  .+.++++|+.|++++|.
T Consensus        50 ~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~--~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          50 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSC
T ss_pred             EEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cc--cCccccccccccccccccc--ccccccccccccccccc
Confidence            34444444444331 124455555555555555442  22  2455555555555555432  24555555555555555


Q ss_pred             CCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCC
Q psy12044        111 LQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSN  190 (767)
Q Consensus       111 Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~  190 (767)
                      +..+.  .+..+++|+.+++++|.++....  +..+++|+.+++++|.++++.+  +.++++|+.|+|++|+|+.++. +
T Consensus       124 ~~~~~--~l~~l~~l~~l~~~~n~l~~~~~--~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~~-l  196 (210)
T d1h6ta2         124 ISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L  196 (210)
T ss_dssp             CCCCG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred             ccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCChh-h
Confidence            44432  24445555555555555544332  3344555555555555554432  4455555555555555555442 3


Q ss_pred             CCCCCcccccCC
Q psy12044        191 ILPTGLHGIDLH  202 (767)
Q Consensus       191 ~~~~~L~~L~Ls  202 (767)
                      ..+++|+.|+|+
T Consensus       197 ~~l~~L~~L~Ls  208 (210)
T d1h6ta2         197 AGLKNLDVLELF  208 (210)
T ss_dssp             TTCTTCSEEEEE
T ss_pred             cCCCCCCEEEcc
Confidence            334455555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=6.6e-14  Score=137.81  Aligned_cols=147  Identities=28%  Similarity=0.378  Sum_probs=120.5

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      ..+++.|++++|.|+.+..  +..  +++|+.|+|++|+|+++.+  |.++++|++|++++|.+..+.  .+..+++|+.
T Consensus        39 l~~l~~L~l~~~~i~~l~~--l~~--l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~  110 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDG--VEY--LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTG  110 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTT--GGG--CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             hcCCCEEECCCCCCCCccc--ccc--CCCcCcCccccccccCccc--ccCCccccccccccccccccc--cccccccccc
Confidence            3578899999999887753  443  7899999999999988754  888999999999999888775  3778899999


Q ss_pred             EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |++++|.+..+.+  +..+++|+.|++++|.+..+.  .+..+++|+.|++++|+++.+++ +..+++|+.|++++|++.
T Consensus       111 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         111 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccc--cchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCC
Confidence            9999998887654  677889999999999888764  47788899999999999988864 456688999999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=2.8e-14  Score=139.72  Aligned_cols=112  Identities=24%  Similarity=0.334  Sum_probs=95.5

Q ss_pred             ccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCC-CCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEecc
Q psy12044         77 LQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQT-VPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELS  155 (767)
Q Consensus        77 L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~-l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  155 (767)
                      .+.++.++++|+.++.+ +  .+++++|+|++|+|+. +.+..|..+++|+.|+|++|.+..+++..|..+++|+.|+|+
T Consensus        10 ~~~v~Cs~~~L~~iP~~-l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRD-I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSC-C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCC-C--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            34566666777665332 2  1578888898888876 556778899999999999999999999999999999999999


Q ss_pred             CCCccccchhhhcCCCCCCeeeccCCccccccCCCC
Q psy12044        156 KCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNI  191 (767)
Q Consensus       156 ~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~  191 (767)
                      +|+|+.+++.+|.++++|+.|+|++|+|+.|++..+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f  122 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHh
Confidence            999999999999999999999999999999988754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=1.3e-13  Score=135.74  Aligned_cols=157  Identities=24%  Similarity=0.351  Sum_probs=132.5

Q ss_pred             eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      -+.+++.+.++..+.. ...++|++|+|++|+|+++.+  +.  ++++|+.|++++|.+..+.  .+.++++|+.|++++
T Consensus        42 l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~--~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          42 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFN  115 (199)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCS
T ss_pred             CCEEECCCCCCCCccccccCCCcCcCccccccccCccc--cc--CCccccccccccccccccc--ccccccccccccccc
Confidence            4579999988887752 236899999999999999875  55  4899999999999998874  389999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      |.+..+.  .+..+++|+.|++++|.+..+.  .+..+++|+.|++++|.++++.+  |.++++|+.|+|++|+|++++.
T Consensus       116 ~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~~  189 (199)
T d2omxa2         116 NQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV  189 (199)
T ss_dssp             SCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             ccccccc--ccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCCcc
Confidence            9988765  4788999999999999998775  47889999999999999999864  8899999999999999998863


Q ss_pred             CCCCCCCcccc
Q psy12044        189 SNILPTGLHGI  199 (767)
Q Consensus       189 ~~~~~~~L~~L  199 (767)
                       +..+++|+.|
T Consensus       190 -l~~L~~L~~L  199 (199)
T d2omxa2         190 -LAKLTNLESL  199 (199)
T ss_dssp             -GGGCTTCSEE
T ss_pred             -ccCCCCCCcC
Confidence             3345555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.7e-14  Score=136.71  Aligned_cols=112  Identities=24%  Similarity=0.442  Sum_probs=71.4

Q ss_pred             CCCCceecccCCeeEEEecCCCccccccCCC--CCccEEEeeCC-CCCCCCchhhhccCCCCccEEEccCCCCCccCccc
Q psy12044         18 CPTSCICKWKGGKQTVECVNKSLITVVEGMD--PNTQVLDYTGN-NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKA   94 (767)
Q Consensus        18 CP~~C~C~~~g~~~~v~C~~~~L~~iP~~l~--~~L~~L~Ls~N-~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~   94 (767)
                      ||..|.|..   ...++|.+.++..+|..++  ++++.|+|++| .|+.+....|.  ++++|+.|+|++|+|+.+.+.+
T Consensus         1 CP~~C~c~~---~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~Ls~N~l~~i~~~~   75 (156)
T d2ifga3           1 CPDACCPHG---SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDA   75 (156)
T ss_dssp             CCSSSCCSS---SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTTG
T ss_pred             CcCCCCcCC---CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhc--cccccCcceeeccccCCccccc
Confidence            999999974   3469999999988887763  45666666544 36666555555  2556666666666666665556


Q ss_pred             ccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcC
Q psy12044         95 FRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPI  135 (767)
Q Consensus        95 f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l  135 (767)
                      |.++++|++|+|++|+|+.+++..|..+ +|+.|+|++|.+
T Consensus        76 f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred             ccccccccceeccCCCCcccChhhhccc-cccccccCCCcc
Confidence            6666666666666666665555555433 455555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.47  E-value=1.8e-14  Score=151.65  Aligned_cols=191  Identities=19%  Similarity=0.214  Sum_probs=151.8

Q ss_pred             hhhccCCCCCceecccCCeeEEEec---CCCccccccCCCCCccEEEeeCCCCCCC--CchhhhccCCCCccEEEccC-C
Q psy12044         12 IKIVSACPTSCICKWKGGKQTVECV---NKSLITVVEGMDPNTQVLDYTGNNLKTL--HNEKFQKMGLVNLQKIYLSR-C   85 (767)
Q Consensus        12 ~~~~~~CP~~C~C~~~g~~~~v~C~---~~~L~~iP~~l~~~L~~L~Ls~N~L~~l--~~~~f~~~~L~~L~~L~Ls~-N   85 (767)
                      +++....|.. --.|..+   .+|-   ..++..-.......++.|+|++|.+.+.  .+..+.+  |++|++|+|++ |
T Consensus        14 ~k~~~~~~~~-l~sW~~~---~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~--L~~L~~L~Ls~~N   87 (313)
T d1ogqa_          14 IKKDLGNPTT-LSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN--LPYLNFLYIGGIN   87 (313)
T ss_dssp             HHHHTTCCGG-GTTCCTT---SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGG--CTTCSEEEEEEET
T ss_pred             HHHHCCCCCc-CCCCCCC---CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhc--Ccccccccccccc
Confidence            3344444431 2357432   3554   4555554444445799999999999974  3566764  99999999986 8


Q ss_pred             CCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchh
Q psy12044         86 RISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDA  165 (767)
Q Consensus        86 ~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~  165 (767)
                      ++++.+|..|.+|++|++|+|++|+|.++.+..+..+.+|+.+++++|.+.+..+..|..++.|+.+++++|.+.+..|.
T Consensus        88 ~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~  167 (313)
T d1ogqa_          88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD  167 (313)
T ss_dssp             TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred             ccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccc
Confidence            99998899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhcCCCCC-CeeeccCCccccccCCCCCCCCcccccCCCCCCCc
Q psy12044        166 AFVGLDSL-EWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       166 ~~~~l~~L-~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C  208 (767)
                      .+..+..| +.++++.|+++++.+..+....+..+++..|.+..
T Consensus       168 ~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~  211 (313)
T d1ogqa_         168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG  211 (313)
T ss_dssp             GGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc
Confidence            88888776 88999999999766554433345567777776653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=2.3e-13  Score=135.03  Aligned_cols=147  Identities=24%  Similarity=0.305  Sum_probs=128.4

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      ..+++.|++++|.|+.+..  +..  +++|+.|+|++|.|+++.+  +..+++|+.|++++|+|+.++  .+..+++|+.
T Consensus        45 L~~L~~L~l~~~~i~~l~~--l~~--l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG--IQY--LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGG--CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCE
T ss_pred             hcCccEEECcCCCCCCchh--Hhh--CCCCCEEeCCCccccCccc--cccCccccccccccccccccc--cccccccccc
Confidence            3579999999999998764  443  8999999999999999754  789999999999999999875  4888999999


Q ss_pred             EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |++++|.+..+.  .+..++.|+.++++.|.++...  .+..+++|+.+++++|+++++++ +..+++|+.|+|++|.+.
T Consensus       117 L~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         117 LSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             EECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCC
Confidence            999999998765  4788999999999999998765  46779999999999999998875 556789999999999886

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-13  Score=131.39  Aligned_cols=123  Identities=19%  Similarity=0.224  Sum_probs=62.7

Q ss_pred             CccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEE
Q psy12044         50 NTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLT  129 (767)
Q Consensus        50 ~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~  129 (767)
                      .+++|+|++|+|+.++. .+.  .+.+|+.|+|++|.|+.+.  .|..+++|++|+|++|+|+.+++..+..+++|+.|+
T Consensus        19 ~lr~L~L~~n~I~~i~~-~~~--~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          19 RDRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             SCEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcEEECCCCCCCccCc-ccc--ccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            45555555555555532 222  2455555555555555542  255555555555555555555544444555555555


Q ss_pred             CCCCcCccccc-CCcCCCCCccEEeccCCCccccch---hhhcCCCCCCeee
Q psy12044        130 LSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIED---AAFVGLDSLEWLK  177 (767)
Q Consensus       130 Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~---~~~~~l~~L~~L~  177 (767)
                      |++|.|+.+.. ..+..+++|+.|+|++|.++..+.   ..+..+++|+.||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            55555554432 234445555555555555544431   2344455555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=6.2e-13  Score=142.51  Aligned_cols=165  Identities=25%  Similarity=0.358  Sum_probs=120.8

Q ss_pred             eEEEecCCCccccc-cCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC
Q psy12044         31 QTVECVNKSLITVV-EGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN  109 (767)
Q Consensus        31 ~~v~C~~~~L~~iP-~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N  109 (767)
                      ..+.+++..+..++ ....++++.|++++|.++.++  .+.  .+++|+.|++++|.++++.+  +..+++|+.|++++|
T Consensus       200 ~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~  273 (384)
T d2omza2         200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN  273 (384)
T ss_dssp             SEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             ceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc--hhh--cccccchhccccCccCCCCc--ccccccCCEeeccCc
Confidence            45677777776654 344678999999999988875  344  37889999999999888754  788889999999999


Q ss_pred             CCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCC
Q psy12044        110 VLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       110 ~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      .++++.+  +..+..++.+.++.|.++++..  +..+.+|+.|+|++|+|+++.+  +..+++|+.|+|++|+|+.++. 
T Consensus       274 ~l~~~~~--~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~~-  346 (384)
T d2omza2         274 QISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS-  346 (384)
T ss_dssp             CCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             ccCCCCc--cccccccccccccccccccccc--cchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCChh-
Confidence            8887753  5667777777777777776543  5666777777777777777653  6667777777777777776652 


Q ss_pred             CCCCCCcccccCCCCCCCc
Q psy12044        190 NILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       190 ~~~~~~L~~L~Ls~N~l~C  208 (767)
                      +..+++|+.|+|++|+++.
T Consensus       347 l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         347 LANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCB
T ss_pred             HcCCCCCCEEECCCCcCCC
Confidence            4455677777777777663

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2e-13  Score=130.04  Aligned_cols=124  Identities=25%  Similarity=0.285  Sum_probs=97.9

Q ss_pred             CCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEe
Q psy12044         74 LVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLE  153 (767)
Q Consensus        74 L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  153 (767)
                      +.+|+.|+|++|+|+.+ +..+..+.+|+.|+|++|.|+.+.  .|..+++|+.|+|++|.++.+++..+..+++|+.|+
T Consensus        17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            56788899999998887 455677888999999999988773  478888999999999999888877777788899999


Q ss_pred             ccCCCccccch-hhhcCCCCCCeeeccCCccccccCC----CCCCCCccccc
Q psy12044        154 LSKCGIEVIED-AAFVGLDSLEWLKLDNNKITTISGS----NILPTGLHGID  200 (767)
Q Consensus       154 Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~ip~~----~~~~~~L~~L~  200 (767)
                      |++|.|+.+.. ..+..+++|+.|++++|.++.++..    +..+++|+.||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99998887754 4577888888999988888876631    22346666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=6.7e-13  Score=120.61  Aligned_cols=118  Identities=25%  Similarity=0.302  Sum_probs=72.0

Q ss_pred             cEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECC
Q psy12044         52 QVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLS  131 (767)
Q Consensus        52 ~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls  131 (767)
                      ++|+|++|+|+.+..  +..  +.+|++|++++|.|+.+ |..|..+++|+.|++++|.|+.++  .|..+++|+.|+++
T Consensus         1 R~L~Ls~n~l~~l~~--l~~--l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQ--LLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGG--GTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCCcc--ccc--CCCCCEEECCCCccCcc-hhhhhhhhcccccccccccccccC--ccccccccCeEECC
Confidence            457777777776643  332  66777777777777665 345666777777777777776663  36666777777777


Q ss_pred             CCcCccccc-CCcCCCCCccEEeccCCCccccc---hhhhcCCCCCCee
Q psy12044        132 GNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIE---DAAFVGLDSLEWL  176 (767)
Q Consensus       132 ~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~---~~~~~~l~~L~~L  176 (767)
                      +|+|+.++. ..+..+++|+.|+|++|.|+...   ...+..+++|+.|
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            777666543 34555666666666666665432   2233334555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=2.4e-12  Score=128.87  Aligned_cols=163  Identities=23%  Similarity=0.327  Sum_probs=106.9

Q ss_pred             eEEEecCCCccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         31 QTVECVNKSLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        31 ~~v~C~~~~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      +.+++.+.++..++ ++  +++|++|+|++|.|+++.+  +.  .+++|+.|++++|.++.+.  .|.++++|+.|++++
T Consensus        44 ~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~--~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          44 TTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred             CEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--cc--ccccccccccccccccccc--ccccccccccccccc
Confidence            45666666666553 23  5667777777776666544  33  2666777777766666542  366666777777766


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      +.+.++.+  +...+.+..+.++++.+....+  +..+++|+.|++++|.+....+  |..+++|+.|+|++|+|+++++
T Consensus       117 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~  190 (227)
T d1h6ua2         117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP  190 (227)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             ccccccch--hccccchhhhhchhhhhchhhh--hccccccccccccccccccchh--hcccccceecccCCCccCCChh
Confidence            66655432  4455666666666666655433  5566778888888888776653  6778888888888888887764


Q ss_pred             CCCCCCCcccccCCCCCCC
Q psy12044        189 SNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       189 ~~~~~~~L~~L~Ls~N~l~  207 (767)
                       +..+++|+.|+|++|+++
T Consensus       191 -l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         191 -LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             -GGGCTTCCEEECTTSCCC
T ss_pred             -hcCCCCCCEEECcCCcCC
Confidence             345577888888888765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=3e-12  Score=137.05  Aligned_cols=147  Identities=28%  Similarity=0.357  Sum_probs=101.3

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      .+++..|++++|.++++.+...    ..+|+.|++++|.++.+  ..+..+++|+.|++++|.++++.+  +..+++|+.
T Consensus       196 l~~~~~l~l~~n~i~~~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~  267 (384)
T d2omza2         196 LTNLESLIATNNQISDITPLGI----LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE  267 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGGG----CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             ccccceeeccCCccCCCCcccc----cCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCE
Confidence            4567777777777777655322    56777777777777765  246677777777777777777653  666777777


Q ss_pred             EECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |++++|.++++.+  +..+..++.+.++.|.++++.  .+..+.+|+.|+|++|+|+++++ +..+++|+.|+|++|.+.
T Consensus       268 L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         268 LKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCC
T ss_pred             eeccCcccCCCCc--ccccccccccccccccccccc--ccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCC
Confidence            7777777776654  566777777777777777654  35667777777777777777653 344567777777777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.6e-12  Score=118.04  Aligned_cols=106  Identities=23%  Similarity=0.322  Sum_probs=87.5

Q ss_pred             cEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCC
Q psy12044         78 QKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKC  157 (767)
Q Consensus        78 ~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  157 (767)
                      +.|+|++|+|+.+.  .+..+.+|++|+|++|.|+.++ ..|..+++|+.|++++|.|+.++  .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp-~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcch-hhhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            57889999998774  3788899999999999998875 45788899999999999998875  3788889999999999


Q ss_pred             Cccccch-hhhcCCCCCCeeeccCCccccccC
Q psy12044        158 GIEVIED-AAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       158 ~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      .|+.++. ..+..+++|+.|++++|.++.++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            9887764 567888889999999988876653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7e-12  Score=126.18  Aligned_cols=176  Identities=22%  Similarity=0.272  Sum_probs=139.8

Q ss_pred             eeEEEecCCCccccccCC---CCCccEEEeeCCCCCC-CCchhhhccCCCCccEEEccC-CCCCccCcccccCCCCCCEE
Q psy12044         30 KQTVECVNKSLITVVEGM---DPNTQVLDYTGNNLKT-LHNEKFQKMGLVNLQKIYLSR-CRISVIDSKAFRGLTNLVDL  104 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l---~~~L~~L~Ls~N~L~~-l~~~~f~~~~L~~L~~L~Ls~-N~L~~i~p~~f~~L~~L~~L  104 (767)
                      -+.++.++..+..+|...   .++|++|+|++|.+.. ++...|.  ++.+++.|.+.. |.+....+..|.++++|+.|
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~--~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE--SCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc--ccccccccccccccccccccccccccccccccc
Confidence            456888889999998754   5789999999999876 5566776  488999998764 78999989999999999999


Q ss_pred             EccCCCCCCCCCCC-CCCCCCCcEEECCCCcCcccccCCcCCCC-CccEEeccCCCccccchhhhcCCCCCCeeeccCCc
Q psy12044        105 DFSHNVLQTVPSDT-FPDYPSLMKLTLSGNPIKQIKTGAFQPLS-YLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNK  182 (767)
Q Consensus       105 ~Ls~N~Lt~l~p~~-f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~  182 (767)
                      ++++|.+....+.. +..+..|..+...++.+..+....|..+. .++.|++++|.++.+....|.....++.+++++|+
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            99999998765433 34556677777788888888887887765 78889999999998887766544334445678888


Q ss_pred             cccccCCCC-CCCCcccccCCCCCCC
Q psy12044        183 ITTISGSNI-LPTGLHGIDLHHNPWT  207 (767)
Q Consensus       183 Lt~ip~~~~-~~~~L~~L~Ls~N~l~  207 (767)
                      |+.++...+ .+++|+.|+|++|.+.
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCC
Confidence            999887654 4588999999999887

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=2e-11  Score=121.94  Aligned_cols=161  Identities=21%  Similarity=0.307  Sum_probs=135.7

Q ss_pred             eeEEEecCCCcccccc-CCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccC
Q psy12044         30 KQTVECVNKSLITVVE-GMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSH  108 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~-~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~  108 (767)
                      -+.++.++..+..+++ .-.++++.|++++|.++.+..  +.  ++++|+.|+++++.+.++.+  +.....+..+.++.
T Consensus        65 L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~--~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          65 LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL  138 (227)
T ss_dssp             CCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CcEeecCCceeecccccccccccccccccccccccccc--cc--ccccccccccccccccccch--hccccchhhhhchh
Confidence            5678888888877653 346899999999999998753  44  38999999999999887643  77889999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccC
Q psy12044        109 NVLQTVPSDTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISG  188 (767)
Q Consensus       109 N~Lt~l~p~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~  188 (767)
                      +.+....+  +..+++|+.|++++|.+....+  +.++++|+.|+|++|.++++.+  |..+++|++|+|++|+|+++++
T Consensus       139 ~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         139 NQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred             hhhchhhh--hccccccccccccccccccchh--hcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc
Confidence            99887653  6788999999999999987754  7889999999999999998764  8889999999999999999975


Q ss_pred             CCCCCCCcccccCCC
Q psy12044        189 SNILPTGLHGIDLHH  203 (767)
Q Consensus       189 ~~~~~~~L~~L~Ls~  203 (767)
                       +..+++|+.|+|++
T Consensus       213 -l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         213 -LANTSNLFIVTLTN  226 (227)
T ss_dssp             -GTTCTTCCEEEEEE
T ss_pred             -cccCCCCCEEEeeC
Confidence             45678899998863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.16  E-value=3.1e-10  Score=119.14  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=39.3

Q ss_pred             eeEEEecCCCccccccCCCCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc
Q psy12044         30 KQTVECVNKSLITVVEGMDPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI   90 (767)
Q Consensus        30 ~~~v~C~~~~L~~iP~~l~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i   90 (767)
                      -..++|++.+++.+|+ ++++|++|+|++|+|+.++..      +.+|+.|++.+|+++.+
T Consensus        40 l~~LdLs~~~L~~lp~-~~~~L~~L~Ls~N~l~~lp~~------~~~L~~L~l~~n~l~~l   93 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL------PQSLKSLLVDNNNLKAL   93 (353)
T ss_dssp             CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC------CTTCCEEECCSSCCSCC
T ss_pred             CCEEEeCCCCCCCCCC-CCCCCCEEECCCCCCcccccc------hhhhhhhhhhhcccchh
Confidence            4679999999999986 567899999999999987632      23455555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.07  E-value=2.4e-12  Score=126.56  Aligned_cols=132  Identities=21%  Similarity=0.262  Sum_probs=96.0

Q ss_pred             CccEEEeeCC--CCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcE
Q psy12044         50 NTQVLDYTGN--NLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMK  127 (767)
Q Consensus        50 ~L~~L~Ls~N--~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~  127 (767)
                      .++.+++.++  .+..++ ..+..  |++|+.|+|++|+|+.+.  .|.++++|+.|+|++|.|+.++ ..+..+++|+.
T Consensus        24 ~~~~~~l~~~~~~i~~l~-~sl~~--L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~   97 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMD-ATLST--LKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEE   97 (198)
T ss_dssp             TCSCEECCBCCTTCCCCH-HHHHH--TTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCE
T ss_pred             ccceeeeecccCchhhhh-hHHhc--ccccceeECcccCCCCcc--cccCCccccChhhccccccccc-ccccccccccc
Confidence            4455666554  233332 34553  788889999888888763  3788888999999888888764 33444567888


Q ss_pred             EECCCCcCcccccCCcCCCCCccEEeccCCCccccch-hhhcCCCCCCeeeccCCccccccCC
Q psy12044        128 LTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED-AAFVGLDSLEWLKLDNNKITTISGS  189 (767)
Q Consensus       128 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~-~~~~~l~~L~~L~Ls~N~Lt~ip~~  189 (767)
                      |++++|.|+.+.+  +..+++|+.|+|++|.|+.+.. ..|..+++|+.|+|++|.+......
T Consensus        98 L~l~~N~i~~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_          98 LWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EECSEEECCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             ccccccccccccc--ccccccccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            8888888887743  6778888888888888887754 4577888888888888888765443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.97  E-value=2.4e-12  Score=126.55  Aligned_cols=132  Identities=19%  Similarity=0.160  Sum_probs=106.1

Q ss_pred             CccccccCC--CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCC
Q psy12044         39 SLITVVEGM--DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPS  116 (767)
Q Consensus        39 ~L~~iP~~l--~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p  116 (767)
                      .+..++..+  +++|++|+|++|+|+.+..  +..  +++|+.|+|++|.|+.+. ..+..+++|+.|++++|.|+.+. 
T Consensus        36 ~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~--l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N~i~~l~-  109 (198)
T d1m9la_          36 PIEKMDATLSTLKACKHLALSTNNIEKISS--LSG--MENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLS-  109 (198)
T ss_dssp             TCCCCHHHHHHTTTCCEEECSEEEESCCCC--HHH--HTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEEECCCHH-
T ss_pred             chhhhhhHHhcccccceeECcccCCCCccc--ccC--CccccChhhccccccccc-ccccccccccccccccccccccc-
Confidence            345555444  6899999999999998853  553  899999999999998764 44555678999999999999874 


Q ss_pred             CCCCCCCCCcEEECCCCcCccccc-CCcCCCCCccEEeccCCCccccchh----------hhcCCCCCCeee
Q psy12044        117 DTFPDYPSLMKLTLSGNPIKQIKT-GAFQPLSYLVTLELSKCGIEVIEDA----------AFVGLDSLEWLK  177 (767)
Q Consensus       117 ~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~L~~i~~~----------~~~~l~~L~~L~  177 (767)
                       .+..+++|+.|+|++|+|+.+.. ..+..+++|+.|+|++|.+....+.          .+..+++|+.||
T Consensus       110 -~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         110 -GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             -HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             -cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence             37788999999999999998754 4688899999999999998765442          245677887776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.64  E-value=2.2e-07  Score=96.71  Aligned_cols=139  Identities=19%  Similarity=0.233  Sum_probs=106.3

Q ss_pred             CCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCCCCCCCCCCCCCCCCCCcEE
Q psy12044         49 PNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHNVLQTVPSDTFPDYPSLMKL  128 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N~Lt~l~p~~f~~l~~L~~L  128 (767)
                      .+++.|+|+++.|+.++. .     +++|+.|+|++|+|+.+ |..   +.+|+.|++++|+++.+..  +  .+.|++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~-~-----~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~l~~n~l~~l~~--l--p~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE-L-----PPHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLKALSD--L--PPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS-C-----CTTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSCCCS--C--CTTCCEE
T ss_pred             cCCCEEEeCCCCCCCCCC-C-----CCCCCEEECCCCCCccc-ccc---hhhhhhhhhhhcccchhhh--h--ccccccc
Confidence            578999999999998874 1     56899999999999976 443   4689999999999987752  2  2469999


Q ss_pred             ECCCCcCcccccCCcCCCCCccEEeccCCCccccchhhhcCCCCCCeeeccCCccccccCCCCCCCCcccccCCCCCCCc
Q psy12044        129 TLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIEDAAFVGLDSLEWLKLDNNKITTISGSNILPTGLHGIDLHHNPWTC  208 (767)
Q Consensus       129 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~l~~L~~L~Ls~N~Lt~ip~~~~~~~~L~~L~Ls~N~l~C  208 (767)
                      +|++|.+..++.  +..+++|+.|++++|.+...+.    ....+..+.+..+...... .+.....++.|++.+|.+..
T Consensus       104 ~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~~-~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         104 GVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             ECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             cccccccccccc--hhhhccceeecccccccccccc----ccccccchhhccccccccc-cccccccceecccccccccc
Confidence            999999998864  6788999999999999887654    2456677777766655432 23345667778888877653

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.57  E-value=1.5e-08  Score=85.53  Aligned_cols=81  Identities=25%  Similarity=0.460  Sum_probs=65.2

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ......+..|+.+.|.|.+.|.|.|.+.|.+++..+......       ..       ....|.|.++...|.|.|.|.|
T Consensus         7 ~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~-------~~-------~~~~L~i~~v~~~D~G~Y~C~a   72 (89)
T d1cs6a4           7 VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI-------EV-------SGGELRFSKLVLEDSGMYQCVA   72 (89)
T ss_dssp             CCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSE-------EE-------ETTEEEESSCCGGGCEEEEEEE
T ss_pred             ECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccccee-------ee-------eeeeEEEEeecccCCEEEEEEE
Confidence            344567889999999999999999999999998877543221       11       1346999999999999999999


Q ss_pred             ccCCCCcccceEEEE
Q psy12044        340 ENQAGSTSSNYTIRI  354 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V  354 (767)
                      .|..|.....+.|.|
T Consensus        73 ~N~~G~~~~~~~l~V   87 (89)
T d1cs6a4          73 ENKHGTVYASAELTV   87 (89)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EeCCCEEEEEEEEEE
Confidence            999998877766655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=9.4e-09  Score=105.97  Aligned_cols=155  Identities=16%  Similarity=0.112  Sum_probs=95.4

Q ss_pred             CCCccEEEeeCCCCCCCC-chhhhccCCCCccEEEccCCCCCccCcccccCCCCCCEEEccCC-CCCCCC-CCCCCCCCC
Q psy12044         48 DPNTQVLDYTGNNLKTLH-NEKFQKMGLVNLQKIYLSRCRISVIDSKAFRGLTNLVDLDFSHN-VLQTVP-SDTFPDYPS  124 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~-~~~f~~~~L~~L~~L~Ls~N~L~~i~p~~f~~L~~L~~L~Ls~N-~Lt~l~-p~~f~~l~~  124 (767)
                      ..+|++|+|+++.++... ...+.  .+++|++|+|++|.++......+..+++|++|+|+++ .++... ...+..+++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~--~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             CCCCCEEECCCCccCHHHHHHHHH--hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            357888888888876433 23344  3788889999888888776777888888889988885 454211 111345788


Q ss_pred             CcEEECCCC-cCcccc-cCCcC-CCCCccEEeccCC--Ccccc-chhhhcCCCCCCeeeccCC-cccc-ccCCCCCCCCc
Q psy12044        125 LMKLTLSGN-PIKQIK-TGAFQ-PLSYLVTLELSKC--GIEVI-EDAAFVGLDSLEWLKLDNN-KITT-ISGSNILPTGL  196 (767)
Q Consensus       125 L~~L~Ls~N-~l~~l~-~~~~~-~l~~L~~L~Ls~N--~L~~i-~~~~~~~l~~L~~L~Ls~N-~Lt~-ip~~~~~~~~L  196 (767)
                      |+.|+|+++ .++... ...+. ..++|+.|+|+++  .++.. ....+..+++|+.|+|++| .+++ ....+...++|
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            888888875 343211 11122 2356777777764  33322 1222345677777777775 3542 22333445677


Q ss_pred             ccccCCCC
Q psy12044        197 HGIDLHHN  204 (767)
Q Consensus       197 ~~L~Ls~N  204 (767)
                      +.|+|+++
T Consensus       203 ~~L~L~~C  210 (284)
T d2astb2         203 QHLSLSRC  210 (284)
T ss_dssp             CEEECTTC
T ss_pred             CEEECCCC
Confidence            77777774

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.54  E-value=2.3e-08  Score=85.58  Aligned_cols=88  Identities=19%  Similarity=0.292  Sum_probs=67.9

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      ..+....+.+|+.+.|.|.+.+.|.|.+.|.+++..+......       .....   .....|.|.++...|.|.|.|.
T Consensus         6 ~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~-------~~~~~---~~~~~L~I~~~~~~D~G~Y~C~   75 (97)
T d1koaa1           6 VKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKY-------MKRYN---GNDYGLTINRVKGDDKGEYTVR   75 (97)
T ss_dssp             ECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTB-------BCCCS---TTEEEEEESCCCSGGGSCEEEE
T ss_pred             EeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEE-------EEEec---CCeeEEEeCCCceecCEEEEEE
Confidence            3445667889999999999999999999999998877543221       11111   1245799999999999999999


Q ss_pred             eccCCCCcccceEEEEEe
Q psy12044        339 AENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~  356 (767)
                      |.|..|.....+.+.|..
T Consensus        76 a~N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          76 AKNSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             EEETTEEEEEEECCEEEC
T ss_pred             EEECCCEEEEEEEEEEee
Confidence            999999887777666654

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.53  E-value=3.9e-08  Score=83.11  Aligned_cols=85  Identities=24%  Similarity=0.438  Sum_probs=66.1

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .+..+.+.+|+.+.|.|.+.+.|.|.+.|.+++..+......     .+..     ......|.|.++...|.|.|.|.+
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~-----~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a   74 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARH-----QVTT-----TKYKSTFEISSVQASDEGNYSVVV   74 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSC-----EEEE-----CSSEEEEECSSCCSCCCEEEEEEC
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccce-----eeee-----ecceeEEeecCCCHHHCEEEEEEE
Confidence            345678889999999999999999999999988776543221     0111     123467999999999999999999


Q ss_pred             ccCCCCcccceEEEE
Q psy12044        340 ENQAGSTSSNYTIRI  354 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V  354 (767)
                      .|..|.....+.+.|
T Consensus        75 ~N~~G~~~~~~~l~V   89 (91)
T d1tnna_          75 ENSEGKQEAEFTLTI   89 (91)
T ss_dssp             BCSSCBCCEEEEEEC
T ss_pred             EECCCEEEEEEEEEE
Confidence            999999877666544

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5.1e-08  Score=84.01  Aligned_cols=90  Identities=21%  Similarity=0.272  Sum_probs=70.7

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+......       ....   ......|.|.++..+|.|.|.|.
T Consensus         5 ~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~-------~~~~---~~~~~~L~I~~~~~~D~G~Y~C~   74 (101)
T d2cqva1           5 QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHM-------KVEN---SENGSKLTILAARQEHCGCYTLL   74 (101)
T ss_dssp             CCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSE-------EEEE---CSSEEEEEETTCCTTTCEEEEEE
T ss_pred             eeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcE-------EEEE---ecceeEEEEeeCCcccCEEEEEE
Confidence            3445677889999999999999999999999988776543221       1111   12246799999999999999999


Q ss_pred             eccCCCCcccceEEEEEeec
Q psy12044        339 AENQAGSTSSNYTIRIVLKE  358 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~~~  358 (767)
                      +.|..|.....+.+.|...+
T Consensus        75 a~N~~G~~~~~~~l~V~~~P   94 (101)
T d2cqva1          75 VENKLGSRQAQVNLTVVDKP   94 (101)
T ss_dssp             EECSSCEEECCEEEEEECSC
T ss_pred             EEECCCEEEEEEEEEEEecC
Confidence            99999999888888877543

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.48  E-value=3.4e-08  Score=85.26  Aligned_cols=91  Identities=22%  Similarity=0.408  Sum_probs=69.3

Q ss_pred             CCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       256 ~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      .+........+..|+.+.|.|.+.+.|.|.+.|.+++..+......     .+...    ......|.|.++...|.|.|
T Consensus        10 ~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~-----~~~~~----~~~~~~L~I~~~~~~D~G~Y   80 (102)
T d1fhga_          10 YFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF-----QIDYD----EEGNCSLTISEVCGDDDAKY   80 (102)
T ss_dssp             EEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSE-----EEEEC----TTCEEEEEESSCCGGGCEEE
T ss_pred             eEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeE-----eEEEe----cCceeeeEecCCCHHhCEEE
Confidence            3333445677889999999999999999999999999887543321     11111    12246799999999999999


Q ss_pred             eEeeccCCCCcccceEEEEE
Q psy12044        336 VCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       336 ~CvA~N~~G~s~~s~sL~V~  355 (767)
                      .|.|.|..|....++.|.|.
T Consensus        81 ~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          81 TCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCcEEEEEEEEEEE
Confidence            99999999988777766653

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=5.1e-08  Score=83.77  Aligned_cols=86  Identities=30%  Similarity=0.565  Sum_probs=65.3

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..++..|+.+.|.|.+.+.|.|.+.|.+++..+........    ....    ....+.|.|.++...|.|.|.|.|.|.
T Consensus        14 ~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~----~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (100)
T d1qz1a3          14 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDE----KHIF----SDDSSELTIRNVDKNDEAEYVCIAENK   85 (100)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCS----SEEE----CTTSCEEEECSCCGGGCEEEEEEEEET
T ss_pred             eEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccce----eEEe----ecCceEEEeCCCCcccCEEEEEEEEEC
Confidence            45667899999999999999999999999887754332210    0111    112367999999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.....+.+.|..
T Consensus        86 ~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          86 AGEQDASIHLKVFA   99 (100)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEE
Confidence            99988877776653

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.45  E-value=4.5e-08  Score=82.96  Aligned_cols=89  Identities=12%  Similarity=0.243  Sum_probs=67.9

Q ss_pred             CCCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        256 QITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       256 ~i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      .+........+..|+.+.|.|.+.+.|.|.+.|.+++..+......       ....   ......|.|.++...|.|.|
T Consensus         4 ~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~-------~~~~---~~~~~~L~I~~~~~~D~G~Y   73 (93)
T d1wiua_           4 KILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL-------LVDA---KSSTTSIFFPSAKRADSGNY   73 (93)
T ss_dssp             EECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTS-------EEEE---ETTEEEEECTTBCGGGCEEE
T ss_pred             eEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeee-------eecc---cccceeeccccccccccEEE
Confidence            3444455678899999999999999999999999988766543221       1111   12245799999999999999


Q ss_pred             eEeeccCCCCcccceEEEE
Q psy12044        336 VCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       336 ~CvA~N~~G~s~~s~sL~V  354 (767)
                      .|.|.|..|.....+.+.|
T Consensus        74 ~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          74 KLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEE
Confidence            9999999998877666654

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.45  E-value=4.4e-08  Score=83.91  Aligned_cols=88  Identities=23%  Similarity=0.303  Sum_probs=67.6

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ......+.+|+.+.|.|.+.+.|.|.+.|++++..+......    . .....    .....|.|.++...|.|.|.|.|
T Consensus        10 ~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~----~-~~~~~----~~~~~L~I~~~~~~D~G~Y~c~a   80 (98)
T d1g1ca_          10 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRI----Y-WYWPE----DNVCELVIRDVTGEDSASIMVKA   80 (98)
T ss_dssp             CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSE----E-EEEEE----TTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeee----E-EEecc----ceEEEEEeccCccccCEEEEEEE
Confidence            344567889999999999999999999999998877543221    0 11111    12357999999999999999999


Q ss_pred             ccCCCCcccceEEEEEe
Q psy12044        340 ENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V~~  356 (767)
                      .|..|.....+.|.|..
T Consensus        81 ~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          81 INIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCcEEEEEEEEEEEE
Confidence            99999988777776653

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.43  E-value=9.1e-08  Score=83.14  Aligned_cols=93  Identities=18%  Similarity=0.253  Sum_probs=63.6

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeec----ccCcceeeeEEEEeeeccCCCCcee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYST----EEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~----~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +.+.++..|+.+.|.|.+.+.|.|.+.|.+++......... .........    ........+.|.|.++...|.|.|.
T Consensus        12 P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   90 (109)
T d2fdbp2          12 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGP-DGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT   90 (109)
T ss_dssp             SCCEEECTTCCEEEEEEEECSSCCEEEEEEEC--------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEE
T ss_pred             CCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceecc-CCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEE
Confidence            45678899999999999999999999999865432211111 100000100    1112234578999999999999999


Q ss_pred             EeeccCCCCcccceEEEE
Q psy12044        337 CVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       337 CvA~N~~G~s~~s~sL~V  354 (767)
                      |.|.|..|...+++.|.|
T Consensus        91 C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          91 CLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEEECSSCEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEE
Confidence            999999999888777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.41  E-value=1.9e-08  Score=106.17  Aligned_cols=160  Identities=16%  Similarity=0.168  Sum_probs=90.4

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhcc--CCCCccEEEccCCCCCccCcc-------------cccCCCCCCEEEccCCCCC
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQKM--GLVNLQKIYLSRCRISVIDSK-------------AFRGLTNLVDLDFSHNVLQ  112 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~~--~L~~L~~L~Ls~N~L~~i~p~-------------~f~~L~~L~~L~Ls~N~Lt  112 (767)
                      .++|+.|+|++|.++......+...  .+++|+.|+|++|.+......             .......|+.|++++|.++
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccc
Confidence            3568888888888776543332210  267788888888776432111             1134556777777777665


Q ss_pred             CCC----CCCCCCCCCCcEEECCCCcCccc-----ccCCcCCCCCccEEeccCCCcccc----chhhhcCCCCCCeeecc
Q psy12044        113 TVP----SDTFPDYPSLMKLTLSGNPIKQI-----KTGAFQPLSYLVTLELSKCGIEVI----EDAAFVGLDSLEWLKLD  179 (767)
Q Consensus       113 ~l~----p~~f~~l~~L~~L~Ls~N~l~~l-----~~~~~~~l~~L~~L~Ls~N~L~~i----~~~~~~~l~~L~~L~Ls  179 (767)
                      ...    ...+..+..|+.|+|++|.|+..     ....+..+++|+.|+|++|.|+..    ....+..+++|+.|+|+
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            321    11233456677777777766531     223455566677777777766543    22345566677777777


Q ss_pred             CCcccccc-----CCC--CCCCCcccccCCCCCCC
Q psy12044        180 NNKITTIS-----GSN--ILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       180 ~N~Lt~ip-----~~~--~~~~~L~~L~Ls~N~l~  207 (767)
                      +|.|+...     ..+  .....|+.|+|++|.+.
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            77665321     110  11245667777777654

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.41  E-value=1e-07  Score=80.51  Aligned_cols=78  Identities=26%  Similarity=0.278  Sum_probs=61.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +....+.+|+.+.|.|.+.+.|.|.+.|.+++.......                ....+.|.|.++...|.|.|.|.|.
T Consensus        12 p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~----------------~~~~~~L~I~~v~~~D~G~Y~C~a~   75 (91)
T d1cs6a3          12 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW----------------LSSEPLLHIQNVDFEDEGTYECEAE   75 (91)
T ss_dssp             CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC----------------SBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred             CCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe----------------eeeeeEEEeCCCCccCCEEEEEEEE
Confidence            345678899999999999999999999998653321110                1123579999999999999999999


Q ss_pred             cCCCCcccceEEEE
Q psy12044        341 NQAGSTSSNYTIRI  354 (767)
Q Consensus       341 N~~G~s~~s~sL~V  354 (767)
                      |..|.....+.+.|
T Consensus        76 N~~G~~~~~~~l~V   89 (91)
T d1cs6a3          76 NIKGRDTYQGRIII   89 (91)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            99998777666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.40  E-value=2.6e-08  Score=105.03  Aligned_cols=157  Identities=16%  Similarity=0.146  Sum_probs=81.2

Q ss_pred             CCccEEEeeCCCCCCCCch----------hhhccCCCCccEEEccCCCCCccC----cccccCCCCCCEEEccCCCCCCC
Q psy12044         49 PNTQVLDYTGNNLKTLHNE----------KFQKMGLVNLQKIYLSRCRISVID----SKAFRGLTNLVDLDFSHNVLQTV  114 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~~----------~f~~~~L~~L~~L~Ls~N~L~~i~----p~~f~~L~~L~~L~Ls~N~Lt~l  114 (767)
                      ++++.|+++++.+..+...          .+.  .+++|+.|+|++|.++...    ...+...++|++|+|++|.+...
T Consensus        59 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~  136 (344)
T d2ca6a1          59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  136 (344)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT--TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             CCCCEEECCCCcccccccccchHHHHHHHHHh--hCCCcccccccccccccccccchhhhhcccccchheeccccccccc
Confidence            5666666666654433211          111  2456667777766665532    22334556677777766655321


Q ss_pred             CCCC-------------CCCCCCCcEEECCCCcCccccc----CCcCCCCCccEEeccCCCcccc-----chhhhcCCCC
Q psy12044        115 PSDT-------------FPDYPSLMKLTLSGNPIKQIKT----GAFQPLSYLVTLELSKCGIEVI-----EDAAFVGLDS  172 (767)
Q Consensus       115 ~p~~-------------f~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~L~~i-----~~~~~~~l~~  172 (767)
                      ....             ....+.|+.|.+++|.++....    ..+.....|+.|+|++|.|...     ....+..+++
T Consensus       137 ~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~  216 (344)
T d2ca6a1         137 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  216 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             ccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhh
Confidence            0000             0134556666666666543221    1233455666777776666532     2233455666


Q ss_pred             CCeeeccCCcccc-----ccCCCCCCCCcccccCCCCCCC
Q psy12044        173 LEWLKLDNNKITT-----ISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       173 L~~L~Ls~N~Lt~-----ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                      |+.|+|++|.|+.     +...+...++|+.|+|++|.+.
T Consensus       217 L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         217 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            6777777666642     2222223456666677766665

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.40  E-value=1e-07  Score=80.13  Aligned_cols=77  Identities=22%  Similarity=0.533  Sum_probs=62.2

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+.+|+.+.|.|.+.+.|.|.+.|.+++..+......        .       ....|.|.++...|.|.|.|.|.|.
T Consensus        12 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~--------~-------~~~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4          12 VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT--------V-------TDSGLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEE--------E-------ETTEEEESSCCSTTCEEEEEEEEET
T ss_pred             CEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEE--------E-------eeeeEEECCCChhhCEEEEEEEEEC
Confidence            356788999999999999999999999998877533211        1       1235999999999999999999999


Q ss_pred             CCCcccceEEEE
Q psy12044        343 AGSTSSNYTIRI  354 (767)
Q Consensus       343 ~G~s~~s~sL~V  354 (767)
                      .|.....+.+.|
T Consensus        77 ~G~~~~~~~l~V   88 (89)
T d1biha4          77 HGDKYFETLVQV   88 (89)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            998777666654

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.37  E-value=9.9e-08  Score=81.55  Aligned_cols=82  Identities=21%  Similarity=0.427  Sum_probs=63.1

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|+.+.|.|.+.|.|.|.+.|.+++..+......    ....     .....+.|.|.++...|.|.|.|.|.|..
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~----~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   85 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI----GGYK-----VRNQHWSLIMESVVPSDKGNYTCVVENEY   85 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGST----TCCE-----EEGGGTEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCce----eeEE-----EcCCcEEEEECCCCcccCEEEEEEEEECC
Confidence            35678999999999999999999999999877543221    0000     01223579999999999999999999999


Q ss_pred             CCcccceEEEE
Q psy12044        344 GSTSSNYTIRI  354 (767)
Q Consensus       344 G~s~~s~sL~V  354 (767)
                      |....++.+.|
T Consensus        86 G~~~~~~~l~V   96 (97)
T d3dara1          86 GSINHTYHLDV   96 (97)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            98777766654

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.7e-07  Score=77.52  Aligned_cols=86  Identities=22%  Similarity=0.372  Sum_probs=64.2

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +..+.+..|+.+.|.|.+.+.|.|.+.|++++..+......       +.. .........|.|.++...|.|.|.|.|.
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~-------~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   74 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQL-------YIP-VSEQHWIGFLSLKSVERSDAGRYWCQVE   74 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEE-------EEE-EETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceee-------eee-ecccCceeeEEECCCCcccCEEEEEEEE
Confidence            44677889999999999999999999999998876543211       111 1112334679999999999999999999


Q ss_pred             cCCCCcc-cceEEEE
Q psy12044        341 NQAGSTS-SNYTIRI  354 (767)
Q Consensus       341 N~~G~s~-~s~sL~V  354 (767)
                      |..|... ..+.+.|
T Consensus        75 N~~G~~~S~~~~l~V   89 (91)
T d1rhfa1          75 DGGETEISQPVWLTV   89 (91)
T ss_dssp             SCTTCEECCCEEEEE
T ss_pred             ECCCCEEEEEEEEEE
Confidence            9998753 3455544

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.8e-07  Score=79.36  Aligned_cols=90  Identities=20%  Similarity=0.336  Sum_probs=63.7

Q ss_pred             ceeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...+..|+.+.|.|.+ .+.|.+.+.|.+++..+.............   ........+.|.|.++...|.|.|.|.|.|
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N   87 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS---SYVLNPTTGELVFDPLSASDTGEYSCEARN   87 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTC---CCCCCTTTCCEEESSCCGGGCCCEEEEEEC
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCC---cEEEeecccceEECCCCcccCcEEEEEEEE
Confidence            3456789999999988 579999999999887765443221111100   001122346799999999999999999999


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      ..|....+..+++.
T Consensus        88 ~~G~~~~s~~v~v~  101 (104)
T d1nbqa2          88 GYGTPMTSNAVRME  101 (104)
T ss_dssp             SSSCCEECCCBCCE
T ss_pred             CCCceEEEEEEEEE
Confidence            99988766554443

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=6.3e-08  Score=81.94  Aligned_cols=85  Identities=19%  Similarity=0.300  Sum_probs=63.9

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC-ce
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG-TF  335 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G-tY  335 (767)
                      +........+.+|+.+.|.|.+.+.|.|.+.|.+++..+......            ........|.|.++..+|.| .|
T Consensus         5 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~------------~~~~~~~~L~i~~~~~~d~G~~Y   72 (92)
T d2ifga1           5 LKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK------------SGGLPSLGLTLANVTSDLNRKNV   72 (92)
T ss_dssp             EEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC------------CCCSSEEEEEEESCCSTTTTCCE
T ss_pred             EEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee------------eeeccceeEEEccccccccceEE
Confidence            333444567889999999999999999999999987554321110            11223467999999999999 69


Q ss_pred             eEeeccCCCCcccceEEE
Q psy12044        336 VCVAENQAGSTSSNYTIR  353 (767)
Q Consensus       336 ~CvA~N~~G~s~~s~sL~  353 (767)
                      .|.|.|..|.....+.+.
T Consensus        73 ~C~a~N~~G~~~~s~~l~   90 (92)
T d2ifga1          73 TCWAENDVGRAEVSVQVN   90 (92)
T ss_dssp             EECCEETTEECCEEECCC
T ss_pred             EEEEEcCCCEEEEEEEEE
Confidence            999999999887765543

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.3e-07  Score=77.94  Aligned_cols=78  Identities=18%  Similarity=0.284  Sum_probs=60.7

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+..|+.+.|.|.+.+.|.|.+.|.+++.........             .....+.|.|.++..+|.|.|.|.|.|..
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~-------------~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~   77 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVT-------------NEGTTSTLTMNPVSFGNEHSYLCTATCES   77 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEE-------------EETTEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceeeeee-------------eecCCcEEEEecccccccceEEEEEEeCC
Confidence            44568999999999999999999999866543222111             01234679999999999999999999999


Q ss_pred             CCcccceEEEE
Q psy12044        344 GSTSSNYTIRI  354 (767)
Q Consensus       344 G~s~~s~sL~V  354 (767)
                      |.....+.+.|
T Consensus        78 g~~~~~~~v~V   88 (90)
T d1vcaa2          78 RKLEKGIQVEI   88 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            98877776655

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=6e-07  Score=79.89  Aligned_cols=94  Identities=15%  Similarity=0.251  Sum_probs=65.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCccccccc-------ce-------eeccc-----CcceeeeE
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESH-------AV-------YSTEE-----GTEIKKSE  321 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~-------~~-------~~~~~-----g~~~~~s~  321 (767)
                      +..+.+..|+.++|.|.+.|.|.|.+.|.+++..+...........       ..       .....     ......+.
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   95 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI   95 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEE
Confidence            3456788999999999999999999999997655543221110000       00       00000     01123467


Q ss_pred             EEEeeeccCCCCceeEeeccCCCCcccceEEEE
Q psy12044        322 LLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       322 L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V  354 (767)
                      |.|.++..+|.|.|+|.|.|..|...+.+.+.|
T Consensus        96 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_          96 FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             EECSCCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEECcCChhcCEEEEEEEEECCCEEEEEEEEEE
Confidence            999999999999999999999999877766654

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.7e-07  Score=78.94  Aligned_cols=94  Identities=13%  Similarity=0.190  Sum_probs=66.2

Q ss_pred             ccceeecccccccccccccccC---CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP---EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P---~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      +...++..|+.++|.|.+.+.|   .|.+.|++++.......... ................++|.|.++...|.|.|.|
T Consensus        11 P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (110)
T d2avga1          11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQ-HLQLHDSYDRASKVYLFELHITDAQPAFTGGYRC   89 (110)
T ss_dssp             CCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSS-SEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEE
T ss_pred             CCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCc-eeEeeeeeEEecccCEEEEEEeccCHHHCcEEEE
Confidence            3456788999999999999998   67899998654322111100 0000011112223456789999999999999999


Q ss_pred             eeccCCCCcccceEEEEE
Q psy12044        338 VAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       338 vA~N~~G~s~~s~sL~V~  355 (767)
                      .|.|..|...+++.|.|.
T Consensus        90 ~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          90 EVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCeEEEEEEEEEE
Confidence            999999999888887765

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4.3e-07  Score=79.57  Aligned_cols=96  Identities=13%  Similarity=0.177  Sum_probs=67.2

Q ss_pred             ccceeecccccccccccccccC---CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP---EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P---~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      +...++..|+.+.|.|.+.+.|   .|.+.|.+++......... .................+.|.|.++...|.|.|+|
T Consensus         7 P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (113)
T d2dava1           7 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAG-KHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRC   85 (113)
T ss_dssp             CCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTT-SSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEE
T ss_pred             CceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccc-eeeeeccceeeEeecCEEEEEEccCCHHHCeEEEE
Confidence            4467888999999999999998   5799999865332111000 00000011112223445689999999999999999


Q ss_pred             eeccCCCCcccceEEEEEee
Q psy12044        338 VAENQAGSTSSNYTIRIVLK  357 (767)
Q Consensus       338 vA~N~~G~s~~s~sL~V~~~  357 (767)
                      .|.|..|...+.+.|.|...
T Consensus        86 ~a~N~~G~~~~~~~L~V~~~  105 (113)
T d2dava1          86 EVTYKDKFDSCSFDLEVHES  105 (113)
T ss_dssp             EEECSSCEEEECCEEEEECC
T ss_pred             EEEeCCCEEEEEEEEEEEcC
Confidence            99999999988888887643

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.7e-07  Score=77.84  Aligned_cols=72  Identities=11%  Similarity=0.158  Sum_probs=58.8

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      ..+.+|+.++|.|.+.+.|.|.+.|.+++....                    .....|.|.++...|.|.|.|.|.|..
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~--------------------~~~~~l~i~~v~~~DsG~Y~C~a~N~~   68 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------------------QGGKTLSVSQLELQDSGTWTCTVLQNQ   68 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEE--------------------EESSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccce--------------------eeeeeeeeeecccccccEEEEEEEeCC
Confidence            457889999999999999999999998654321                    122468899999999999999999999


Q ss_pred             CCcccceEEEEE
Q psy12044        344 GSTSSNYTIRIV  355 (767)
Q Consensus       344 G~s~~s~sL~V~  355 (767)
                      |.....+.+.|.
T Consensus        69 g~~~~~~~v~V~   80 (84)
T d2nxyb2          69 KKVEFKIDIVVL   80 (84)
T ss_dssp             EEEEEEEEECEE
T ss_pred             CEEEEEEEEEEE
Confidence            988777666554

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.7e-07  Score=79.07  Aligned_cols=91  Identities=18%  Similarity=0.283  Sum_probs=66.1

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccce--eecccCcceeeeEEEEeeeccCCCCc-eeEee
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAV--YSTEEGTEIKKSELLIYNSNIDDNGT-FVCVA  339 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~--~~~~~g~~~~~s~L~I~nvs~sD~Gt-Y~CvA  339 (767)
                      ...+..|..+.|.|.+.+.|.|.+.|.+++..+.............  .....+.....+.|.|.++...|.|. |+|.|
T Consensus        11 ~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A   90 (107)
T d1iray3          11 TMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFA   90 (107)
T ss_dssp             EEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEE
T ss_pred             EEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEE
Confidence            4567789999999999999999999999988775443321111100  11112223446789999999999995 99999


Q ss_pred             ccCCCCcccceEEE
Q psy12044        340 ENQAGSTSSNYTIR  353 (767)
Q Consensus       340 ~N~~G~s~~s~sL~  353 (767)
                      .|..|...+.+.|.
T Consensus        91 ~N~~G~~~~~i~L~  104 (107)
T d1iray3          91 KNTHGIDAAYIQLI  104 (107)
T ss_dssp             ECSSCEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEE
Confidence            99999887766553

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.1e-07  Score=77.23  Aligned_cols=95  Identities=26%  Similarity=0.413  Sum_probs=63.8

Q ss_pred             CCCCCccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeec-cCCCC
Q psy12044        256 QITPSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSN-IDDNG  333 (767)
Q Consensus       256 ~i~~~~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs-~sD~G  333 (767)
                      .+........+.+|+.+.|.|.+.+.|.+ .+.|++++............. .+....   ......|.|.++. ..|.|
T Consensus         4 ~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~-~~~~~~---~~~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           4 RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSES-RFFVSS---SQGRSELHIENLNMEADPG   79 (101)
T ss_dssp             CCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGG-TEEEEE---ETTEEEEEECSCCTTTSSE
T ss_pred             eEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCc-eEEEEe---CCCEEEEEEeccccccCCE
Confidence            34344456678899999999999999988 799998553322111111111 111111   1234689999998 57899


Q ss_pred             ceeEeeccCCCCcccceEEEE
Q psy12044        334 TFVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       334 tY~CvA~N~~G~s~~s~sL~V  354 (767)
                      .|.|.|.|..|.....+.|.|
T Consensus        80 ~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          80 QYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEECCCEEEEEEEEEE
Confidence            999999999998877766654

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.26  E-value=5.3e-07  Score=76.84  Aligned_cols=84  Identities=13%  Similarity=0.320  Sum_probs=62.5

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+......    + +..   ......+.|.|.++..+|.|.|.|.|.|.
T Consensus        12 ~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~----~-~~~---~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   83 (97)
T d1biha3          12 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPED----R-ITR---HNRTSGKRLLFKTTLPEDEGVYTCEVDNG   83 (97)
T ss_dssp             SEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTS----S-EES---CSSSTTSEEEESSCCGGGCEEEEEEECCS
T ss_pred             CEEEecCCeEEEEEEEEEecCCEEEEEEeeeecccccee----e-eee---eeecCCCEEEEEeccccccEEEEEEEEEC
Confidence            466789999999999999999999999998877543221    0 100   01122357999999999999999999999


Q ss_pred             CCCccc-ceEEEE
Q psy12044        343 AGSTSS-NYTIRI  354 (767)
Q Consensus       343 ~G~s~~-s~sL~V  354 (767)
                      .|...+ .+.|.|
T Consensus        84 ~G~~~s~s~~L~V   96 (97)
T d1biha3          84 VGKPQKHSLKLTV   96 (97)
T ss_dssp             SSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            997653 455543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=2.6e-07  Score=78.04  Aligned_cols=83  Identities=19%  Similarity=0.278  Sum_probs=61.7

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      +...++.+|+.+.|.|.+.+.|.|.+.|.++++.+......     ......      .+.|.|.++...|.|.|.|.|.
T Consensus         8 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~-----~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~   76 (92)
T d1epfa2           8 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDV-----RFIVLS------NNYLQIRGIKKTDEGTYRCEGR   76 (92)
T ss_dssp             CSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCT-----TEEECT------TSCEEETTCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccce-----eeeeee------eeeEEECCCCHHhCEEEEEEEE
Confidence            44568889999999999999999999999988766443221     111111      2359999999999999999999


Q ss_pred             cCCCCcccceEEEE
Q psy12044        341 NQAGSTSSNYTIRI  354 (767)
Q Consensus       341 N~~G~s~~s~sL~V  354 (767)
                      |..|.......+.|
T Consensus        77 n~~~~~~~~~~i~V   90 (92)
T d1epfa2          77 ILARGEINFKDIQV   90 (92)
T ss_dssp             EGGGTEEEEEEEEE
T ss_pred             ECcCCEEEEEEEEE
Confidence            98776554444443

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=5.4e-07  Score=75.25  Aligned_cols=78  Identities=19%  Similarity=0.284  Sum_probs=61.2

Q ss_pred             cceeeccccccccccccc-ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ....+.+|+.+.|.|.+. +.|.+.+.|.+++..+.....               ....+.|.|.++...|.|.|.|.|.
T Consensus        10 ~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---------------~~~~~~L~i~~v~~~d~G~Y~C~a~   74 (89)
T d1gl4b_          10 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA---------------MDFNGILTIRNVQPSDAGTYVCTGS   74 (89)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE---------------EEETTEEEECSCCGGGCEEEEEEEE
T ss_pred             CeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc---------------EeeceEEEEecCCcccCEEEEEEEE
Confidence            356788999999999997 678899999997655432211               1223579999999999999999999


Q ss_pred             cCCCCcccceEEEE
Q psy12044        341 NQAGSTSSNYTIRI  354 (767)
Q Consensus       341 N~~G~s~~s~sL~V  354 (767)
                      |..|.....+.+.|
T Consensus        75 N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          75 NMFAMDQGTATLHV   88 (89)
T ss_dssp             CSSCEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            99998877666654

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.4e-07  Score=79.90  Aligned_cols=93  Identities=17%  Similarity=0.356  Sum_probs=63.9

Q ss_pred             ccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ...+.+.+|+.+.|.|.+.+.|.|.+.|.+++..+...........  ...........+.|.|.++..+|.|.|.|.+.
T Consensus        11 ~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   88 (105)
T d1nbqa1          11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKIT--ASYEDRVTFLPTGITFKSVTREDTGTYTCMVS   88 (105)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEEC--TTTTTTCEEETTEEECSCCCTTSCSEEEEEEE
T ss_pred             CCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceee--ccccceeeecCceEEEecccccceeeEEEEEE
Confidence            3456788999999999999999999999986543322111100000  00001111223579999999999999999999


Q ss_pred             cCCCCcccceEEEEE
Q psy12044        341 NQAGSTSSNYTIRIV  355 (767)
Q Consensus       341 N~~G~s~~s~sL~V~  355 (767)
                      |..|.....+.+.+.
T Consensus        89 n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          89 EEGGNSYGEVKVKLI  103 (105)
T ss_dssp             ETTSSCEECCEEECC
T ss_pred             ECCCCEEEEEEEEEE
Confidence            999998877766543

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=4.7e-07  Score=78.80  Aligned_cols=91  Identities=16%  Similarity=0.347  Sum_probs=62.1

Q ss_pred             eeeccccccccccccc-ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+..|+.+.|.|.+. +.|.+.+.|++++..+...........  ...........+.|.|.++..+|.|.|.|.|.|.
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~   89 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAF--MNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG   89 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSC--SSSCEEECTTTCCEEESSCCGGGCEEEEEEEECS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEee--cCceEEEeecccceEECCCCccCCEEEEEEEEEC
Confidence            3577899999999985 799999999998876643322111000  0000001122457999999999999999999999


Q ss_pred             CCCcccceEEEEEe
Q psy12044        343 AGSTSSNYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~s~sL~V~~  356 (767)
                      .|.+..+..+++.+
T Consensus        90 ~G~~~~s~~v~l~V  103 (110)
T d1f97a2          90 YGTAMRSEAAHMDA  103 (110)
T ss_dssp             SSCCEECCCEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99887765555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=7.9e-08  Score=98.83  Aligned_cols=174  Identities=20%  Similarity=0.202  Sum_probs=117.8

Q ss_pred             eEEEecCCCcc-ccccCC-CCCccEEEeeCCCCCCCCchhhhccCCCCccEEEccCCCCCcc-CcccccCCCCCCEEEcc
Q psy12044         31 QTVECVNKSLI-TVVEGM-DPNTQVLDYTGNNLKTLHNEKFQKMGLVNLQKIYLSRCRISVI-DSKAFRGLTNLVDLDFS  107 (767)
Q Consensus        31 ~~v~C~~~~L~-~iP~~l-~~~L~~L~Ls~N~L~~l~~~~f~~~~L~~L~~L~Ls~N~L~~i-~p~~f~~L~~L~~L~Ls  107 (767)
                      ++++.+++.+. .+...+ ...+..+.++...+.......+.   ..+|++|+|++|.++.. ....+..+++|++|+|+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~---~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS---PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCC---CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHhccceEeeccccccccchhhhcc---CCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            45777776553 111111 34566777777766654444443   57899999999988764 34557889999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEECCCC-cCcccc-cCCcCCCCCccEEeccCC-Cccccc-hhhhc-CCCCCCeeeccCC-
Q psy12044        108 HNVLQTVPSDTFPDYPSLMKLTLSGN-PIKQIK-TGAFQPLSYLVTLELSKC-GIEVIE-DAAFV-GLDSLEWLKLDNN-  181 (767)
Q Consensus       108 ~N~Lt~l~p~~f~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~Ls~N-~L~~i~-~~~~~-~l~~L~~L~Ls~N-  181 (767)
                      ++.++......+..+++|+.|+|+++ .++... ...+.++++|+.|+|++| .++... ...+. ..++|+.|+++++ 
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99988766667888999999999995 565322 112346799999999997 454322 22233 3578999999975 


Q ss_pred             -cccc--ccCCCCCCCCcccccCCCCCCC
Q psy12044        182 -KITT--ISGSNILPTGLHGIDLHHNPWT  207 (767)
Q Consensus       182 -~Lt~--ip~~~~~~~~L~~L~Ls~N~l~  207 (767)
                       .++.  +.......++|+.|+|++|...
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~i  188 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVML  188 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred             cccccccccccccccccccccccccccCC
Confidence             3442  2222223578999999987643

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.7e-07  Score=74.88  Aligned_cols=79  Identities=23%  Similarity=0.347  Sum_probs=58.2

Q ss_pred             CCCCccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      +...+....+..|+.+.|.|.+.+.|.| .+.|++++..+.....                   ..+.+......|.|.|
T Consensus         4 f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~-------------------~~~~l~~~~~~d~G~Y   64 (85)
T d1rhfa2           4 FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------------------SPSVLNVTGVTQSTMF   64 (85)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------------------SSEEEEECCCSSCEEE
T ss_pred             EEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC-------------------cceEEecCCccccEEE
Confidence            3334456678899999999999999998 8999999877643221                   2245555667899999


Q ss_pred             eEeeccCCCCccc-ceEEEE
Q psy12044        336 VCVAENQAGSTSS-NYTIRI  354 (767)
Q Consensus       336 ~CvA~N~~G~s~~-s~sL~V  354 (767)
                      .|.|.|..|...+ .+++.|
T Consensus        65 ~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          65 SCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEcCCCcEEEEEEEEEE
Confidence            9999999996533 455443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=3.4e-07  Score=78.61  Aligned_cols=96  Identities=15%  Similarity=0.326  Sum_probs=64.8

Q ss_pred             CCccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        259 PSTFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       259 ~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .....+.+.+|+.+.|.|.+.+.|.|.+.|.+.+..............  ...........++|.|.++..+|.|.|.|.
T Consensus         6 t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~   83 (102)
T d1f97a1           6 TAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQIT--APYADRVTFSSSGITFSSVTRKDNGEYTCM   83 (102)
T ss_dssp             CSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEEC--GGGTTTEEEETTEEEESCCCGGGCEEEEEE
T ss_pred             ccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccc--cceeeEEEecCCEEEEeECCccCCEEEEEE
Confidence            344457788999999999999999999999984322211110000000  000111122345799999999999999999


Q ss_pred             eccCCCCcccceEEEEEe
Q psy12044        339 AENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~  356 (767)
                      +.|..|.....+.+.+.+
T Consensus        84 a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          84 VSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EEETTSSSEEEEEEEEEE
T ss_pred             EEECCCCEEEEEEEEEEE
Confidence            999999988877766543

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.19  E-value=6.3e-07  Score=75.70  Aligned_cols=82  Identities=21%  Similarity=0.344  Sum_probs=61.3

Q ss_pred             CCCCCccceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        256 QITPSTFYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       256 ~i~~~~~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      .+...+....+.+|+.+.|.|.+.+.|.| .+.|.+++..+......      ....     ...+.|.|.++..+|.|.
T Consensus         4 ~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~------~~~~-----~~~~~L~i~~v~~~D~G~   72 (94)
T d1biha1           4 VLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHN------AALR-----KDEGSLVFLRPQASDEGH   72 (94)
T ss_dssp             EECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTT------EEEC-----TTSCCEEESSCCGGGCEE
T ss_pred             EEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecce------eeec-----ccceEEEEeccChhcCeE
Confidence            34444556788899999999999999976 69999988776433221      1111     113469999999999999


Q ss_pred             eeEeeccCCCCccc
Q psy12044        335 FVCVAENQAGSTSS  348 (767)
Q Consensus       335 Y~CvA~N~~G~s~~  348 (767)
                      |.|.|.|..|.+.+
T Consensus        73 Y~C~a~N~~G~~~s   86 (94)
T d1biha1          73 YQCFAETPAGVASS   86 (94)
T ss_dssp             EEEEEEETTEEEEC
T ss_pred             EEEEEEeCCCEEEE
Confidence            99999999997543

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5.2e-07  Score=74.98  Aligned_cols=71  Identities=18%  Similarity=0.231  Sum_probs=57.2

Q ss_pred             cceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...++.+|+.+.|.|.+.|.|.|.++|.+++..+...                       +.+..++..|.|.|.|.|.|
T Consensus        12 ~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-----------------------~~~~~v~~~d~G~Y~C~A~N   68 (84)
T d2oz4a3          12 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-----------------------GESVTVTRDLEGTYLCRARS   68 (84)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-----------------------TSCEECCGGGCEEEEEEEEE
T ss_pred             ccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-----------------------eeeeccccCCCCEEEEEEEc
Confidence            4567889999999999999999999999987654321                       12345778899999999999


Q ss_pred             CCCCcccceEEEEE
Q psy12044        342 QAGSTSSNYTIRIV  355 (767)
Q Consensus       342 ~~G~s~~s~sL~V~  355 (767)
                      ..|.....+.+.|.
T Consensus        69 ~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          69 TQGEVTREVTVNVL   82 (84)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99988777766654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=8.7e-07  Score=76.38  Aligned_cols=90  Identities=20%  Similarity=0.171  Sum_probs=62.0

Q ss_pred             ccceeecccccccccccccccC-CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .....+..|+.+.|.|.+.+.| .|.++|.+++..+.....    ....... .........|.|.++..+|.|.|.|.|
T Consensus        10 ~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~----~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A   84 (104)
T d2aw2a1          10 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLE----DRQTSWK-EEKNISFFILHFEPVLPNDNGSYRCSA   84 (104)
T ss_dssp             TEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECC----SSCEEEE-ECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccc----eeeeeEE-ecCCceEEEEEEccccHHHCCeEEEEE
Confidence            3456788999999999999998 489999997654421111    0001111 112223457999999999999999999


Q ss_pred             ccCCCCccc-ceEEEEE
Q psy12044        340 ENQAGSTSS-NYTIRIV  355 (767)
Q Consensus       340 ~N~~G~s~~-s~sL~V~  355 (767)
                      .|..|.... .+.+.|.
T Consensus        85 ~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          85 NFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EETTEEEECCCEEEEEE
T ss_pred             EcCCCeEEEEEEEEEEE
Confidence            999987543 5555543

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1e-06  Score=76.17  Aligned_cols=80  Identities=19%  Similarity=0.344  Sum_probs=59.4

Q ss_pred             cccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccce
Q psy12044        271 NVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNY  350 (767)
Q Consensus       271 ~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~  350 (767)
                      ...+.|.+.|.|.|.+.|.+++..+......      ............+.|.|.++...|.|.|+|.|.|..|....++
T Consensus        19 ~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   92 (105)
T d1wwca_          19 EHCIEFVVRGNPPPTLHWLHNGQPLRESKII------HVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI   92 (105)
T ss_dssp             EEEEEEEEECSSCCEEEEEETTEECCCSSSE------EEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEEEeCCCeEEEEeCccccCCCcce------eeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEE
Confidence            3457778999999999999999877544321      1111122234467899999999999999999999999888777


Q ss_pred             EEEEEe
Q psy12044        351 TIRIVL  356 (767)
Q Consensus       351 sL~V~~  356 (767)
                      .+.|..
T Consensus        93 ~v~V~~   98 (105)
T d1wwca_          93 NGHFLK   98 (105)
T ss_dssp             EECCSC
T ss_pred             EEEEEe
Confidence            666544

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=6e-07  Score=75.57  Aligned_cols=77  Identities=18%  Similarity=0.311  Sum_probs=58.7

Q ss_pred             ceeeccccccccccccc-ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      ...+..|+.+.|.|.+. +.|.+.++|...+..+...          .     .....+.|.|.+++.+|.|.|.|.|.|
T Consensus        12 ~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~----------~-----~~~~~~~L~i~~v~~~D~G~Y~C~Asn   76 (90)
T d1gsma1          12 VVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV----------Q-----SDTGRSVLTVRNASLSAAGTRVCVGSC   76 (90)
T ss_dssp             EEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCE----------E-----EESSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeee----------e-----ccCceeeEEcCccChhhCCcEEEEEEe
Confidence            45677899999999874 7899999998755433110          0     112357899999999999999999999


Q ss_pred             CCCCcccceEEEE
Q psy12044        342 QAGSTSSNYTIRI  354 (767)
Q Consensus       342 ~~G~s~~s~sL~V  354 (767)
                      ..|....++.|.|
T Consensus        77 ~~g~~~~s~~l~V   89 (90)
T d1gsma1          77 GGRTFQHTVQLLV   89 (90)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            9887776666544

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.1e-06  Score=75.69  Aligned_cols=83  Identities=13%  Similarity=0.278  Sum_probs=61.5

Q ss_pred             ccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcc
Q psy12044        268 EGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTS  347 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~  347 (767)
                      .+....+.|.+.|.|.|.+.|.+++..+......     .............+.|.|.++...|.|.|.|.|.|..|...
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   89 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYI-----CTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE   89 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSE-----EEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeee-----eeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEE
Confidence            3455668899999999999999999887643221     11111222233456899999999999999999999999987


Q ss_pred             cceEEEEE
Q psy12044        348 SNYTIRIV  355 (767)
Q Consensus       348 ~s~sL~V~  355 (767)
                      ..+.+.|.
T Consensus        90 ~~~~v~V~   97 (103)
T d1wwbx_          90 KQISAHFM   97 (103)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEEEE
Confidence            77666554

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.7e-06  Score=75.02  Aligned_cols=81  Identities=17%  Similarity=0.345  Sum_probs=57.8

Q ss_pred             cccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCcccceEE
Q psy12044        273 SLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTI  352 (767)
Q Consensus       273 sL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL  352 (767)
                      .+.|.+.|.|.|.+.|.+++..+........   .............+.|.|.++...|.|.|.|.|.|..|...+++.+
T Consensus        19 ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v   95 (107)
T d1he7a_          19 CIPFSVDGQPAPSLRWLFNGSVLNETSFIFT---EFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA   95 (107)
T ss_dssp             EEEEEECCSSCCEEEEEETTEECCCCSSEEE---EEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEecCCeEEEEEeeeEccCccceee---eeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEE
Confidence            3556899999999999999988754332100   0111112223346789999999999999999999999998777766


Q ss_pred             EEEe
Q psy12044        353 RIVL  356 (767)
Q Consensus       353 ~V~~  356 (767)
                      .+..
T Consensus        96 ~v~~   99 (107)
T d1he7a_          96 AFMD   99 (107)
T ss_dssp             CCCS
T ss_pred             EEEc
Confidence            6543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.4e-07  Score=101.59  Aligned_cols=162  Identities=17%  Similarity=0.139  Sum_probs=101.0

Q ss_pred             CCCccEEEeeCCCCCCCCchhhhc--cCCCCccEEEccCCCCCccCccc-----ccCCCCCCEEEccCCCCCCCCCC---
Q psy12044         48 DPNTQVLDYTGNNLKTLHNEKFQK--MGLVNLQKIYLSRCRISVIDSKA-----FRGLTNLVDLDFSHNVLQTVPSD---  117 (767)
Q Consensus        48 ~~~L~~L~Ls~N~L~~l~~~~f~~--~~L~~L~~L~Ls~N~L~~i~p~~-----f~~L~~L~~L~Ls~N~Lt~l~p~---  117 (767)
                      ...++.|++++|.+.......+..  ..+..++.+++++|.++......     ......|+.+++++|.++.....   
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~  333 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  333 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc
Confidence            356788888888776543221110  02567888888888776432221     12345788888888877654322   


Q ss_pred             -CCCCCCCCcEEECCCCcCccccc----CCc-CCCCCccEEeccCCCccccc----hhhhcCCCCCCeeeccCCccccc-
Q psy12044        118 -TFPDYPSLMKLTLSGNPIKQIKT----GAF-QPLSYLVTLELSKCGIEVIE----DAAFVGLDSLEWLKLDNNKITTI-  186 (767)
Q Consensus       118 -~f~~l~~L~~L~Ls~N~l~~l~~----~~~-~~l~~L~~L~Ls~N~L~~i~----~~~~~~l~~L~~L~Ls~N~Lt~i-  186 (767)
                       .+....+|++|+|++|.|+....    ..+ .....|+.|+|++|.|+...    ...+..+++|++|+|++|.|+.- 
T Consensus       334 ~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  413 (460)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHH
Confidence             22345678888888888764211    122 23567888888888887532    33456678888888888888631 


Q ss_pred             ----cCCCC-CCCCcccccCCCCCCCch
Q psy12044        187 ----SGSNI-LPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       187 ----p~~~~-~~~~L~~L~Ls~N~l~C~  209 (767)
                          ...+. ....|+.|++.+|.|..+
T Consensus       414 ~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         414 ILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             HHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence                11111 224688888888888754

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.9e-06  Score=73.00  Aligned_cols=84  Identities=14%  Similarity=0.174  Sum_probs=56.7

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .....+..|+.+.|.|.+.+.|.|.+.|+.  ........      .......   .....+.|.|.++..+|.|.|+|.
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           8 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL------KEIKVTS---SRRFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCE------EEEEEEE---TTEEEEEEEECSCCGGGCSEEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecC------CceeEEE---eecCceEEEECCCCHHHCeEEEEE
Confidence            346788899999999999999988766543  22111110      0001111   122346799999999999999999


Q ss_pred             eccCCCCcccc-eEEE
Q psy12044        339 AENQAGSTSSN-YTIR  353 (767)
Q Consensus       339 A~N~~G~s~~s-~sL~  353 (767)
                      |.|..|.+.++ ..|.
T Consensus        79 a~N~~G~~~s~~a~L~   94 (96)
T d2c9aa1          79 IRTEGGVGISNYAELV   94 (96)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEEE
Confidence            99999986554 3443

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=2e-06  Score=72.96  Aligned_cols=77  Identities=29%  Similarity=0.515  Sum_probs=55.4

Q ss_pred             cceeecccccccccccccccCC-CcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPE-AKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~-p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ...++..|+.+.|.|.+.+.|. +.+.|++ ++..+.....     + +....  .....+.|.|.++...|.|.|.|.|
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~-----~-~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a   79 (97)
T d1epfa1           8 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQ-----R-ISVVW--NDDDSSTLTIYNANIDDAGIYKCVV   79 (97)
T ss_dssp             SSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSS-----S-EEEEE--EETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccc-----c-EEEEe--ecCcceEEEcccCchhhceEEEEEE
Confidence            3567789999999999999985 7999998 4443322111     1 11111  1123468999999999999999999


Q ss_pred             ccCCCCc
Q psy12044        340 ENQAGST  346 (767)
Q Consensus       340 ~N~~G~s  346 (767)
                      .|..|..
T Consensus        80 ~N~~G~~   86 (97)
T d1epfa1          80 TAEDGTQ   86 (97)
T ss_dssp             EETTTEE
T ss_pred             EeCCCcE
Confidence            9999864

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3.9e-06  Score=70.68  Aligned_cols=74  Identities=22%  Similarity=0.386  Sum_probs=56.3

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...+.+|+.+.|.|.+.+ +.|.+.|+++++.+......      +...      ..+.|.|.++..+|.|.|.|.|.|.
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~------~~~~------~~~~L~I~~v~~~DsG~Y~C~A~n~   72 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPK------YGLM------GRKNLLIFNLSEGDSGVYQCLSEER   72 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSS------BCCT------TTTCEEECSCCGGGCEEEEEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeee------eecc------eeeEEEECCCCHHHCcEEEEEEEEc
Confidence            346789999999999998 77899999988776543211      1111      1235999999999999999999998


Q ss_pred             CCCcccc
Q psy12044        343 AGSTSSN  349 (767)
Q Consensus       343 ~G~s~~s  349 (767)
                      .|.....
T Consensus        73 ~g~~~~~   79 (92)
T d1olza1          73 VKNKTVF   79 (92)
T ss_dssp             CSSSEEE
T ss_pred             CCCEEEE
Confidence            8865443

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.98  E-value=1.2e-06  Score=74.50  Aligned_cols=73  Identities=23%  Similarity=0.447  Sum_probs=53.9

Q ss_pred             cccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCCCccc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAGSTSS  348 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~  348 (767)
                      ++.+.|.|.+.+.|.|.+.|.+++..+......    . +..      .....|.+..+..+|.|.|.|.|.|..|...+
T Consensus        22 ~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~----~-~~~------~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S   90 (97)
T d1cs6a1          22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDS----R-YRL------VAGDLVISNPVKAKDAGSYQCVATNARGTVVS   90 (97)
T ss_dssp             CCEEEECCEEEEESCCEEEEEETTEECCCSTTS----S-EEE------ETTEEEEESCCHHHHCEEEEEEEEETTEEEEC
T ss_pred             CCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCc----e-EEe------eeeeEEEEecccccCCEEEEEEEEECCCEEEE
Confidence            468999999999999999999998877543211    0 111      11245777888899999999999999997643


Q ss_pred             -ceEE
Q psy12044        349 -NYTI  352 (767)
Q Consensus       349 -s~sL  352 (767)
                       .+.|
T Consensus        91 ~~a~L   95 (97)
T d1cs6a1          91 REASL   95 (97)
T ss_dssp             CCEEE
T ss_pred             EEEEE
Confidence             4544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.1e-07  Score=89.50  Aligned_cols=85  Identities=22%  Similarity=0.143  Sum_probs=48.6

Q ss_pred             ccccCCCCCCEEEccCCCCCCCCC--CCCCCCCCCcEEECCCCcCcccccCCcCCCCCccEEeccCCCccccch------
Q psy12044         93 KAFRGLTNLVDLDFSHNVLQTVPS--DTFPDYPSLMKLTLSGNPIKQIKTGAFQPLSYLVTLELSKCGIEVIED------  164 (767)
Q Consensus        93 ~~f~~L~~L~~L~Ls~N~Lt~l~p--~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~L~~i~~------  164 (767)
                      ..+..+++|++|+|++|+|+.+.+  ..+..+++|+.|+|++|.|+.+..-.+.....|+.|+|++|.+.....      
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            344556677777777777766542  334456666666666666666554333334456666666666654322      


Q ss_pred             -hhhcCCCCCCeee
Q psy12044        165 -AAFVGLDSLEWLK  177 (767)
Q Consensus       165 -~~~~~l~~L~~L~  177 (767)
                       ..+..+++|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence             2244556666554

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=4.6e-06  Score=70.54  Aligned_cols=81  Identities=23%  Similarity=0.361  Sum_probs=60.6

Q ss_pred             ceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..++.+|+.+.|.|.+.+ +.+.+.|++++..+......       ...     ...+.|.|.++..+|.|.|.|.|.|.
T Consensus        12 ~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~-------~~~-----~~~~~L~I~~v~~~d~G~Y~C~a~N~   78 (96)
T d1l6za2          12 NTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERM-------TLS-----QNNSILRIDPIKREDAGEYQCEISNP   78 (96)
T ss_dssp             CSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTE-------EEE-----TTTTEEEECSCCGGGCEEEEEEEESS
T ss_pred             ceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccce-------ecc-----CCceEEEEeccchhhceEEEEEEEeC
Confidence            356788999999999866 56899999998877543321       111     12357999999999999999999999


Q ss_pred             CCCccc-ceEEEEEe
Q psy12044        343 AGSTSS-NYTIRIVL  356 (767)
Q Consensus       343 ~G~s~~-s~sL~V~~  356 (767)
                      .|...+ .+.|.|..
T Consensus        79 ~g~~~S~~~~L~V~~   93 (96)
T d1l6za2          79 VSVRRSNSIKLDIIF   93 (96)
T ss_dssp             SCCEECCCCEEEECC
T ss_pred             CCCeEEEeEEEEEEc
Confidence            987754 46666543

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=6.1e-06  Score=69.67  Aligned_cols=77  Identities=17%  Similarity=0.336  Sum_probs=56.7

Q ss_pred             CCCCCCccceeecccccccccccccccCC-CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        255 PQITPSTFYLEIQEGKNVSLLCKVSAIPE-AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       255 P~i~~~~~~~~v~~G~~vsL~C~a~g~P~-p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      |.+......+.+..|+.+.|.|.+.+.+. +.++|++++..+.....       ...      .....|.|.++..+|.|
T Consensus         7 P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~-------~~~------~~~~~L~I~~v~~~D~G   73 (93)
T d1n26a1           7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS-------RWA------GMGRRLLLRSVQLHDSG   73 (93)
T ss_dssp             CCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCE-------EEE------EESSEEEECSCCGGGCE
T ss_pred             CcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceee-------EEe------cCCCEEEECCCChhcCE
Confidence            34444455677888999999999998775 58999998876643221       111      12347999999999999


Q ss_pred             ceeEeeccCCC
Q psy12044        334 TFVCVAENQAG  344 (767)
Q Consensus       334 tY~CvA~N~~G  344 (767)
                      .|.|.+.|..+
T Consensus        74 ~Y~C~a~n~~~   84 (93)
T d1n26a1          74 NYSCYRAGRPA   84 (93)
T ss_dssp             EEEEESSSSCS
T ss_pred             EEEEEECCccc
Confidence            99999987543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=7.9e-07  Score=95.56  Aligned_cols=113  Identities=22%  Similarity=0.202  Sum_probs=81.3

Q ss_pred             CCccEEEeeCCCCCCCCc-hhhhccCCCCccEEEccCCCCCcc----CcccccCCCCCCEEEccCCCCCCCC----CCCC
Q psy12044         49 PNTQVLDYTGNNLKTLHN-EKFQKMGLVNLQKIYLSRCRISVI----DSKAFRGLTNLVDLDFSHNVLQTVP----SDTF  119 (767)
Q Consensus        49 ~~L~~L~Ls~N~L~~l~~-~~f~~~~L~~L~~L~Ls~N~L~~i----~p~~f~~L~~L~~L~Ls~N~Lt~l~----p~~f  119 (767)
                      .+|+.||++.|+|++..- ..+.  .+++|+.|+|++|.|+..    +..++..+++|++|+|++|.|+...    ...+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~--~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHH--hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            368999999999987542 2333  378999999999998843    2455778899999999999885311    1122


Q ss_pred             C-CCCCCcEEECCCCcCcccc----cCCcCCCCCccEEeccCCCccccc
Q psy12044        120 P-DYPSLMKLTLSGNPIKQIK----TGAFQPLSYLVTLELSKCGIEVIE  163 (767)
Q Consensus       120 ~-~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~L~~i~  163 (767)
                      . ...+|+.|+|++|.++...    ...+..+++|+.|+|++|.|+...
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~  128 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG  128 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhh
Confidence            2 2357889999998887542    345667788888888888887543

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.90  E-value=8.6e-06  Score=71.09  Aligned_cols=82  Identities=20%  Similarity=0.231  Sum_probs=57.4

Q ss_pred             ceeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC---ceeEe
Q psy12044        263 YLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG---TFVCV  338 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G---tY~Cv  338 (767)
                      ..++.+|+.+.|.|.+ .+.|.|.+.|.+++..+............+...      ..++|.|.+++..|.|   .|.|.
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~D~gd~g~Y~C~   84 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG------PDGNLYFTIVTKEDVSDIYKYVCT   84 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC------TTSCEEEEEECGGGCCSSEEEEEE
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccc------cccccEEeeeEeeccCCceEEEEE
Confidence            3456789999999986 899999999999765543222111111111111      2346999999999877   69999


Q ss_pred             eccCCCCcccce
Q psy12044        339 AENQAGSTSSNY  350 (767)
Q Consensus       339 A~N~~G~s~~s~  350 (767)
                      |.|..|......
T Consensus        85 A~N~~g~~~~~~   96 (111)
T d1biha2          85 AKNAAVDEEVVL   96 (111)
T ss_dssp             EECTTCSSCEEE
T ss_pred             EEeCCCCceEEE
Confidence            999999876544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.3e-07  Score=87.10  Aligned_cols=67  Identities=19%  Similarity=0.202  Sum_probs=43.1

Q ss_pred             cCCCCCccEEeccCCCccccch--hhhcCCCCCCeeeccCCccccccCC-CCCCCCcccccCCCCCCCch
Q psy12044        143 FQPLSYLVTLELSKCGIEVIED--AAFVGLDSLEWLKLDNNKITTISGS-NILPTGLHGIDLHHNPWTCD  209 (767)
Q Consensus       143 ~~~l~~L~~L~Ls~N~L~~i~~--~~~~~l~~L~~L~Ls~N~Lt~ip~~-~~~~~~L~~L~Ls~N~l~C~  209 (767)
                      +..+++|+.|+|++|+|+.+.+  ..+..+++|+.|+|++|.|+.++.. ......|+.|++++|++.+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            3456677777777777776542  3456677777777777777766542 12234577777888877643

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.8e-05  Score=65.94  Aligned_cols=74  Identities=24%  Similarity=0.306  Sum_probs=54.4

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .....++..|+.+.|.|.+. .|.+.+.|++++..+......     .+.....+   ....|.|.++..+|.|.|.|.|
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~-----~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a   76 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKS-----RYRIRVEG---KKHILIIEGATKADAAEYSVMT   76 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTC-----SEEEEEET---TEEEEEEEEECTTTCSEEEEEE
T ss_pred             CCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCc-----cEEEEEeC---CccEEEECccccccCEEEEEEE
Confidence            34567889999999999984 688999999998776443211     11111111   2457999999999999999999


Q ss_pred             ccC
Q psy12044        340 ENQ  342 (767)
Q Consensus       340 ~N~  342 (767)
                      .|.
T Consensus        77 ~n~   79 (90)
T d1x44a1          77 TGG   79 (90)
T ss_dssp             TTE
T ss_pred             ecc
Confidence            874

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.6e-06  Score=75.78  Aligned_cols=90  Identities=18%  Similarity=0.209  Sum_probs=63.2

Q ss_pred             cceeecccccccccccccccC-CCcEEEeecCeeccCCCcccccccceeecc-cCcceeeeEEEEeeeccCC-CCceeEe
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIP-EAKITWLFDGVPIQNESMSASESHAVYSTE-EGTEIKKSELLIYNSNIDD-NGTFVCV  338 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g~~l~~~s~~~~~~~~~~~~~-~g~~~~~s~L~I~nvs~sD-~GtY~Cv  338 (767)
                      ....+.+|+.+.|.|.+.+.+ .+.+.|.+++..+......     .+.... .......+.|.|.++...| .|.|.|.
T Consensus        14 ~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~-----~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~   88 (115)
T d2crya1          14 QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG-----RYTVETISTEEGVISTLTISNIVRADFQTIYNCT   88 (115)
T ss_dssp             CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEET-----TEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEE
T ss_pred             CCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeee-----eEeeeeeccccCcEEEEEEeccchhcCCeEEEEE
Confidence            345677899999999999865 5578999887766443211     111111 1112234679999999999 6999999


Q ss_pred             eccCCCCcccceEEEEEe
Q psy12044        339 AENQAGSTSSNYTIRIVL  356 (767)
Q Consensus       339 A~N~~G~s~~s~sL~V~~  356 (767)
                      |.|..|.+.+.+.|.|..
T Consensus        89 A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          89 AWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             EECSSCEEEEEECCCCSC
T ss_pred             EEECCCeEEEEEEEEEEC
Confidence            999999988777766543

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.1e-05  Score=69.31  Aligned_cols=77  Identities=18%  Similarity=0.268  Sum_probs=57.5

Q ss_pred             eeecccccccccc------cccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeE
Q psy12044        264 LEIQEGKNVSLLC------KVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVC  337 (767)
Q Consensus       264 ~~v~~G~~vsL~C------~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~C  337 (767)
                      ..+..|....|.|      .+.+.|.|.+.|.+++..+......      .       ......|.|.++..+|.|.|+|
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~------~-------~~~~~~L~I~~v~~~D~G~Y~C   75 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH------F-------SGVKDRLIVMNVAEKHRGNYTC   75 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSS------E-------EEETTEEEESSCCGGGCEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcE------E-------EecCCEEEEcccccccCcEEEE
Confidence            4567888999999      5678899999999999887543221      1       1112469999999999999999


Q ss_pred             eeccCCCCcccceEEE
Q psy12044        338 VAENQAGSTSSNYTIR  353 (767)
Q Consensus       338 vA~N~~G~s~~s~sL~  353 (767)
                      .|.|..|....+++..
T Consensus        76 ~a~n~~~g~~~~vt~~   91 (103)
T d1iray2          76 HASYTYLGKQYPITRV   91 (103)
T ss_dssp             EEEEEETTEEEEEEEE
T ss_pred             EEEECcCCEEEEEEEE
Confidence            9999887654443333

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.76  E-value=5.6e-06  Score=71.40  Aligned_cols=77  Identities=19%  Similarity=0.377  Sum_probs=57.1

Q ss_pred             ceeecccccccccccc-cccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKV-SAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a-~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      .+.+.+|+.+.|.|.+ .+.|.+.+.|.+++..+.....    .+ .+..     ...+.|.|.++..+|.|.|.|.|.|
T Consensus        13 ~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~----~~-~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (105)
T d1cs6a2          13 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD----GR-RFVS-----QTTGNLYIAKTEASDLGNYSCFATS   82 (105)
T ss_dssp             CEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCC----SS-EEEC-----TTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEeCCCeEEEEEEccCCCCCCEEEEEEeecccccccc----ce-eeee-----cCCCEEeecccccccCcEEEEEEEE
Confidence            4678899999999997 7899999999998765432111    11 1111     1234699999999999999999999


Q ss_pred             CCCCcccc
Q psy12044        342 QAGSTSSN  349 (767)
Q Consensus       342 ~~G~s~~s  349 (767)
                      ..|.....
T Consensus        83 ~~g~~~~~   90 (105)
T d1cs6a2          83 HIDFITKS   90 (105)
T ss_dssp             EETTEEEE
T ss_pred             CCCCEEEE
Confidence            88876543

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.76  E-value=8.1e-06  Score=68.03  Aligned_cols=73  Identities=25%  Similarity=0.376  Sum_probs=54.7

Q ss_pred             eeecccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+.+|+.++|.|.+.+ .|.+.+.|++++..+....                  ....|.|.++..+|.|.|.|.|.|.
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~------------------~~~~l~i~~v~~~dsG~Y~C~a~n~   71 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR------------------SDPNFSIPQANHSHSGDYHCTGNIG   71 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES------------------SCCEEEETTCCGGGCEEEEEEEEET
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc------------------cccccccCccCHHHCCeEEEEEEeC
Confidence            34678999999999865 4667899999887653211                  1246899999999999999999998


Q ss_pred             CCCcc-cceEEEE
Q psy12044        343 AGSTS-SNYTIRI  354 (767)
Q Consensus       343 ~G~s~-~s~sL~V  354 (767)
                      .|... ..+.+.|
T Consensus        72 ~g~~~S~~v~l~V   84 (88)
T d2fcba2          72 YTLYSSKPVTITV   84 (88)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             CCCEEeeeEEEEE
Confidence            87643 3444444

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.1e-05  Score=69.03  Aligned_cols=85  Identities=16%  Similarity=0.254  Sum_probs=62.4

Q ss_pred             ceeeccccccccccccc-ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        263 YLEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      .....+|+.+.|.|.+. +.+.+.++|.+++..+......    . .     ......+.|.|.++...|.|.|.|.+.|
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~----~-~-----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   80 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQ----A-S-----RIHQHKEKLWFVPAKVEDSGHYYCVVRN   80 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCT----T-S-----SEEEETTEEEETTCCGGGCEEEEEEEEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCccccccccc----c-e-----EEeccCCEEEeccceecCCEEEEEEEEC
Confidence            34566799999999875 6789999999976433211110    0 0     0112235799999999999999999999


Q ss_pred             CCCCcccceEEEEEee
Q psy12044        342 QAGSTSSNYTIRIVLK  357 (767)
Q Consensus       342 ~~G~s~~s~sL~V~~~  357 (767)
                      ..|....++.|.|..+
T Consensus        81 ~~g~~~~~~~L~V~~~   96 (101)
T d1iray1          81 SSYCLRIKISAKFVEN   96 (101)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEeC
Confidence            9999888888877653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.71  E-value=8.3e-06  Score=68.15  Aligned_cols=73  Identities=21%  Similarity=0.320  Sum_probs=54.2

Q ss_pred             eeeccccccccccccc-ccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVS-AIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~-g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+.+|+.+.|.|.+. +.|.+.+.|++++..+...                  .....|.|.++..+|.|.|.|.|.|.
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~------------------~~~~~l~I~~v~~~dsG~Y~C~a~n~   73 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------------------HHNSDFHIPKATLKDSGSYFCRGLVG   73 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------------------EECCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEccccccee------------------ccccccEECccceeccceEEEEEEeC
Confidence            3467999999999886 4566789999988665321                  12346889999999999999999998


Q ss_pred             CCCcc-cceEEEE
Q psy12044        343 AGSTS-SNYTIRI  354 (767)
Q Consensus       343 ~G~s~-~s~sL~V  354 (767)
                      .|... ..+.+.|
T Consensus        74 ~~~~~S~~v~itV   86 (89)
T d1fnla2          74 SKNVSSETVNITI   86 (89)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             CCCeEEeeEEEEE
Confidence            77543 2344443

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2e-05  Score=65.63  Aligned_cols=73  Identities=19%  Similarity=0.293  Sum_probs=54.1

Q ss_pred             eeeccccccccccccccc-CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAI-PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~-P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+.+|+.++|.|.+.+. +...+.|++++..+....                  ....|.|.+++.+|.|.|.|.|.|.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~------------------~~~~l~i~~~~~~dsG~Y~C~a~n~   71 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY------------------ENHNISITNATVEDSGTYYCTGKVW   71 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC------------------CSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc------------------ccceEEEeeeeeecCcEEEEEEEeC
Confidence            356789999999998765 556899999987664321                  1246899999999999999999997


Q ss_pred             CCCcc-cceEEEE
Q psy12044        343 AGSTS-SNYTIRI  354 (767)
Q Consensus       343 ~G~s~-~s~sL~V  354 (767)
                      .|... ..+.+.|
T Consensus        72 ~~~~~S~~v~i~V   84 (89)
T d1f2qa2          72 QLDYESEPLNITV   84 (89)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             CCCeEeeeEEEEE
Confidence            76542 2344444

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.7e-05  Score=63.75  Aligned_cols=66  Identities=26%  Similarity=0.404  Sum_probs=46.6

Q ss_pred             CccceeecccccccccccccccCCCcEEE-eecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITW-LFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW-~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      .+....+.+|+.++|.|.+.+.+.+...| ++++..+..                    ....|.|.+++.+|.|.|.|.
T Consensus         7 ~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~i~~v~~~d~G~Y~C~   66 (82)
T d1f2qa1           7 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------------------TNSSLNIVNAKFEDSGEYKCQ   66 (82)
T ss_dssp             ESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC--------------------CSSEEEECSCCGGGCEEEEEE
T ss_pred             cCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec--------------------ccceeEECCCChhhCCcEEEE
Confidence            34445678999999999999999886555 446554421                    124689999999999999999


Q ss_pred             eccCCCC
Q psy12044        339 AENQAGS  345 (767)
Q Consensus       339 A~N~~G~  345 (767)
                      |.|..++
T Consensus        67 a~~s~~S   73 (82)
T d1f2qa1          67 HQQVNES   73 (82)
T ss_dssp             CTTSSCC
T ss_pred             ecCCCCc
Confidence            9886543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.55  E-value=3.9e-05  Score=63.18  Aligned_cols=64  Identities=22%  Similarity=0.522  Sum_probs=50.3

Q ss_pred             cceeecccccccccccccccCCC-cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEA-KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p-~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ....+.+|+.++|.|.+.+.+.+ .+.|.+++..+...                    ...|.|.++..+|.|.|.|.+.
T Consensus        12 ~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~--------------------~~~l~i~~v~~~dsG~Y~C~a~   71 (85)
T d2fcba1          12 QWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH--------------------TQPSYRFKANNNDSGEYTCQTG   71 (85)
T ss_dssp             CCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC--------------------CSSEEEEECCGGGCEEEEEECT
T ss_pred             CCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc--------------------ccceEEeeccccCCcEEEEECC
Confidence            34567899999999999998876 56777777665321                    2358899999999999999999


Q ss_pred             cCCCC
Q psy12044        341 NQAGS  345 (767)
Q Consensus       341 N~~G~  345 (767)
                      |..++
T Consensus        72 ns~~S   76 (85)
T d2fcba1          72 QTSLS   76 (85)
T ss_dssp             TSBCC
T ss_pred             CCccc
Confidence            87554

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.55  E-value=2.2e-05  Score=65.42  Aligned_cols=74  Identities=20%  Similarity=0.357  Sum_probs=55.6

Q ss_pred             CccceeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      .....++.+|+.+.|.|.+ +.|.+.+.|++++..+......       .....+   ....|.|.++...|.|.|.|.|
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~-------~~~~~~---~~~~L~I~~~~~~D~G~Y~c~a   75 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDC-------EIIEDG---KKHILILHNCQLGMTGEVSFQA   75 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSC-------EEEECS---SCEEEECCSCCSCCCSEECCBC
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeE-------EEEeec---eeEEEEEcCCChhcCEEEEEEE
Confidence            3456788999999999997 5789999999998877543221       111111   2457999999999999999999


Q ss_pred             ccCCC
Q psy12044        340 ENQAG  344 (767)
Q Consensus       340 ~N~~G  344 (767)
                      .|..+
T Consensus        76 ~n~~~   80 (89)
T d1tiua_          76 ANAKS   80 (89)
T ss_dssp             SSCBC
T ss_pred             CceEE
Confidence            77543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=3.6e-05  Score=66.01  Aligned_cols=79  Identities=16%  Similarity=0.178  Sum_probs=58.7

Q ss_pred             ceeecccccccccccccc-cCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEee
Q psy12044        263 YLEIQEGKNVSLLCKVSA-IPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVA  339 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g-~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA  339 (767)
                      ...+.+|+.++|.|.+.+ .|.+  .++|.+++..+......             .....++|.|......|.|.|+|.|
T Consensus        13 ~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~-------------~~~~~s~l~i~~~~~dd~g~ytC~A   79 (103)
T d1iama1          13 PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV-------------GEPAEVTTTVLVRRDHHGAQFSCRT   79 (103)
T ss_dssp             CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC-------------TTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             CceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc-------------cccceEEEEEeeehhHCCCEEEEEE
Confidence            345778999999999986 4555  57798888776432211             1234567889888888999999999


Q ss_pred             ccCCCCcccceEEEE
Q psy12044        340 ENQAGSTSSNYTIRI  354 (767)
Q Consensus       340 ~N~~G~s~~s~sL~V  354 (767)
                      .|..|.......+.+
T Consensus        80 ~n~~g~~~~~~~~~~   94 (103)
T d1iama1          80 ELDLRPQGLELFENT   94 (103)
T ss_dssp             EEECGGGTSCEEEEE
T ss_pred             EeCCCCccCeEeeeE
Confidence            999998877665554

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.47  E-value=3.3e-05  Score=63.53  Aligned_cols=64  Identities=22%  Similarity=0.358  Sum_probs=49.0

Q ss_pred             cceeecccccccccccccccCCCcEEEe-ecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWL-FDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~-~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ....+.+|+.++|.|.+.+.+.+.+.|+ +++..+..                    ....|.|.++..+|.|.|.|.+.
T Consensus        13 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~i~~~~~~d~G~Y~C~a~   72 (84)
T d1fnla1          13 QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------------------QASSYFIDAATVNDSGEYRCQTN   72 (84)
T ss_dssp             CCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------------------SCSEEEESSCCGGGCEEEEEECS
T ss_pred             CCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee--------------------cceeeEecCCcccCCEEEEEEcc
Confidence            3457889999999999999998865555 45544421                    12368999999999999999998


Q ss_pred             cCCCC
Q psy12044        341 NQAGS  345 (767)
Q Consensus       341 N~~G~  345 (767)
                      +..++
T Consensus        73 ~s~~S   77 (84)
T d1fnla1          73 LSTLS   77 (84)
T ss_dssp             SSCCC
T ss_pred             CCCcc
Confidence            76543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=4.1e-05  Score=64.27  Aligned_cols=69  Identities=20%  Similarity=0.396  Sum_probs=51.4

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..+..|..+.|.|.+. .|.+.+.|++++..+......      +....   ......|.|.++...|.|.|+|.|.|.
T Consensus        16 ~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~------~~~~~---~~~~~~L~I~~~~~~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          16 YQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSK------YIFES---IGAKRTLTISQCSLADDAAYQCVVGGE   84 (94)
T ss_dssp             EEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSS------SEEEE---ETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred             EEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeee------Eeeec---cCCeEEeecCCCCceecEEEEEEEeeE
Confidence            4678999999999985 589999999998877542110      11111   112457999999999999999999774

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=2.3e-05  Score=65.44  Aligned_cols=77  Identities=18%  Similarity=0.204  Sum_probs=52.1

Q ss_pred             eeecccccccccccccccCCCcEEEeecCeeccCCCccc-----ccccceeecccCcceeeeEEEEeeeccCCCCceeEe
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSA-----SESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCV  338 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~-----~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~Cv  338 (767)
                      +....|.+++|.|... .|.+.+.|.+++..+.......     ........     ...++.|.|.++..+|.|.|.|.
T Consensus         5 v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~sL~I~~l~~~DsG~Y~c~   78 (93)
T d1ccza1           5 IYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL-----DTVSGSLTIYNLTSSDEDEYEME   78 (93)
T ss_dssp             EEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE-----CTTTCCEEECSCCGGGCEEEEEE
T ss_pred             EEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEE-----cCCeeEEEEEecChhhCEEEEEE
Confidence            4567899999999764 5888999999776543211110     00000111     12246799999999999999999


Q ss_pred             eccCCCCc
Q psy12044        339 AENQAGST  346 (767)
Q Consensus       339 A~N~~G~s  346 (767)
                      +.|..+..
T Consensus        79 ~~n~~~t~   86 (93)
T d1ccza1          79 SPNITDTM   86 (93)
T ss_dssp             CTTCCSCE
T ss_pred             EECCCcEE
Confidence            98876644

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00012  Score=62.77  Aligned_cols=83  Identities=13%  Similarity=0.179  Sum_probs=57.0

Q ss_pred             eeecccccccccccccc-c--CCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeec
Q psy12044        264 LEIQEGKNVSLLCKVSA-I--PEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g-~--P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~  340 (767)
                      ..+.+|+.++|.|.+.+ .  |.+.++|++++..+.......        .........+.|.+......|.|.|+|.|.
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~--------~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~   83 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGK--------AAPAPQEATATFNSTADREDGHRNFSCLAV   83 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCS--------STTCTTCEEEEEEEECCGGGGGCEEEEEEE
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccce--------EeecccceeEEEEEeeehhcCCcEEEEEEE
Confidence            45678999999999987 3  455799999988775432211        111222345567777777777889999999


Q ss_pred             cCCCCcccceEEEE
Q psy12044        341 NQAGSTSSNYTIRI  354 (767)
Q Consensus       341 N~~G~s~~s~sL~V  354 (767)
                      |..|.....+...+
T Consensus        84 n~~~~~~~~~~~~~   97 (106)
T d1zxqa1          84 LDLMSRGGNIFHKH   97 (106)
T ss_dssp             EECGGGTCCEEEEE
T ss_pred             ecCCCCCCeeEecc
Confidence            99887666554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.12  E-value=8.8e-05  Score=69.20  Aligned_cols=66  Identities=9%  Similarity=0.084  Sum_probs=28.0

Q ss_pred             ccCCCCCCEEEccCCCCCCCCC----CCCCCCCCCcEEECCCCcCcccc----cCCcCCCCCccEEeccCCCcc
Q psy12044         95 FRGLTNLVDLDFSHNVLQTVPS----DTFPDYPSLMKLTLSGNPIKQIK----TGAFQPLSYLVTLELSKCGIE  160 (767)
Q Consensus        95 f~~L~~L~~L~Ls~N~Lt~l~p----~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~L~  160 (767)
                      +...++|++|+|++|.|.....    ..+...+.|+.|+|++|.|+...    ..++...++|+.|+|++|.+.
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            3444455555555554442111    11222344555555555544311    112333444555555555433

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00032  Score=60.96  Aligned_cols=99  Identities=20%  Similarity=0.335  Sum_probs=58.8

Q ss_pred             CCCCCccceeecccccccccccccccCC----CcEEEeecC--eecc-------C-CC----cccccccceeecccCcce
Q psy12044        256 QITPSTFYLEIQEGKNVSLLCKVSAIPE----AKITWLFDG--VPIQ-------N-ES----MSASESHAVYSTEEGTEI  317 (767)
Q Consensus       256 ~i~~~~~~~~v~~G~~vsL~C~a~g~P~----p~itW~~~g--~~l~-------~-~s----~~~~~~~~~~~~~~g~~~  317 (767)
                      .+......+.+.+|+++.|.|.....+.    ..+.|.+..  ....       . ..    .......+..+.......
T Consensus         6 ~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   85 (124)
T d1eaja_           6 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKS   85 (124)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGG
T ss_pred             EEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCC
Confidence            3444444577889999999999764432    357887621  1100       0 00    000111122333333334


Q ss_pred             eeeEEEEeeeccCCCCceeEeeccCCCCcccceEEEE
Q psy12044        318 KKSELLIYNSNIDDNGTFVCVAENQAGSTSSNYTIRI  354 (767)
Q Consensus       318 ~~s~L~I~nvs~sD~GtY~CvA~N~~G~s~~s~sL~V  354 (767)
                      ....|.|.++...|.|.|.|.+.+..|.....+.+.|
T Consensus        86 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          86 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEE
Confidence            4568999999999999999999887765554444443

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.99  E-value=0.00046  Score=60.34  Aligned_cols=93  Identities=15%  Similarity=0.269  Sum_probs=57.1

Q ss_pred             ceeeccccccccccccccc---CCCcEEEeecCee--c---cCCC-----cccccccceeecccCcceeeeEEEEeeecc
Q psy12044        263 YLEIQEGKNVSLLCKVSAI---PEAKITWLFDGVP--I---QNES-----MSASESHAVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~---P~p~itW~~~g~~--l---~~~s-----~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      .+.+..|+.++|.|.....   ....+.|.+.+..  .   ....     ..........+..........+|.|.++..
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            4677899999999986532   3346889874321  1   0100     000111112222233344467899999999


Q ss_pred             CCCCceeEeeccCCCCcccceEEEEE
Q psy12044        330 DDNGTFVCVAENQAGSTSSNYTIRIV  355 (767)
Q Consensus       330 sD~GtY~CvA~N~~G~s~~s~sL~V~  355 (767)
                      +|.|.|.|.+.+..+.....+.|.|.
T Consensus        91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             hHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            99999999999877766655555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.70  E-value=0.0002  Score=66.70  Aligned_cols=109  Identities=12%  Similarity=0.053  Sum_probs=74.3

Q ss_pred             CCCccEEEeeCC-CCCCCCch----hhhccCCCCccEEEccCCCCCcc----CcccccCCCCCCEEEccCCCCCCCC---
Q psy12044         48 DPNTQVLDYTGN-NLKTLHNE----KFQKMGLVNLQKIYLSRCRISVI----DSKAFRGLTNLVDLDFSHNVLQTVP---  115 (767)
Q Consensus        48 ~~~L~~L~Ls~N-~L~~l~~~----~f~~~~L~~L~~L~Ls~N~L~~i----~p~~f~~L~~L~~L~Ls~N~Lt~l~---  115 (767)
                      .++|+.|+|+++ .++.-.-.    .+.  ...+|+.|+|++|.|...    ....+...+.|++|+|++|.|+...   
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~--~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAAC--NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHT--TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHh--hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            367999999974 56532221    232  257899999999999853    2345566789999999999988522   


Q ss_pred             -CCCCCCCCCCcEEECCCCcCccccc-------CCcCCCCCccEEeccCCC
Q psy12044        116 -SDTFPDYPSLMKLTLSGNPIKQIKT-------GAFQPLSYLVTLELSKCG  158 (767)
Q Consensus       116 -p~~f~~l~~L~~L~Ls~N~l~~l~~-------~~~~~l~~L~~L~Ls~N~  158 (767)
                       ...+...++|+.|+|++|.+..+..       ..+...++|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             2346677899999999998765432       223334556666665543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.40  E-value=0.0014  Score=55.06  Aligned_cols=83  Identities=14%  Similarity=0.110  Sum_probs=51.9

Q ss_pred             eeecccccccccccccc--cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        264 LEIQEGKNVSLLCKVSA--IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g--~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      +....|+.++|.|....  .....|.|.+++..+.........   ...........+++|.|.++..+|+|.|.|.+.+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~---~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKP---FLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCC---EESSTTEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCcc---ccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEe
Confidence            44567999999996432  234579999977655321111000   0000000112245799999999999999999999


Q ss_pred             CCCCcccc
Q psy12044        342 QAGSTSSN  349 (767)
Q Consensus       342 ~~G~s~~s  349 (767)
                      ..|.....
T Consensus        82 ~~g~~~~~   89 (98)
T d1hnga1          82 TNGTRILN   89 (98)
T ss_dssp             TTCCEEEE
T ss_pred             CCCCEEEE
Confidence            88876433

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0031  Score=52.54  Aligned_cols=78  Identities=22%  Similarity=0.339  Sum_probs=49.3

Q ss_pred             eeecccccccccccccccCCCcEEEeecCe--eccCC-Cc----ccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLFDGV--PIQNE-SM----SASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~~g~--~l~~~-s~----~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +...+|++++|.|.........+.|.....  .+... ..    .......+............+|.|.++..+|.|+|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            345689999999998887788899987322  11110 00    000011122222233334567999999999999999


Q ss_pred             Eeecc
Q psy12044        337 CVAEN  341 (767)
Q Consensus       337 CvA~N  341 (767)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99865

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.00053  Score=69.96  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=42.2

Q ss_pred             cccHHHHHhcccCCCCCCC---------CccccCCCCcceEEe--eCCc---eEEEecccc-CCCcchhhhhhhCCCCcc
Q psy12044        430 KYTSVNATSATCMDKVNGG---------YIIADGHNDMMLYAT--DSGI---LVATNNMNT-YPSYSISYQIEQNPDLVN  494 (767)
Q Consensus       430 ~fs~~El~~AT~~nnFs~~---------nlIG~GgfG~VYKG~--~dG~---~VA~~~~~~-~~~~~~~~~~e~npdlin  494 (767)
                      .|||+|+..||  .+|+.+         ++||+|+||+||||.  .+|.   .||++.... .+....       -+|++
T Consensus         6 ~~t~~d~~~a~--~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~-------~~~~~   76 (299)
T d1jpaa_           6 PFTFEDPNEAV--REFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQR-------RDFLS   76 (299)
T ss_dssp             GGGSSSHHHHH--HHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHH-------HHHHH
T ss_pred             CCCHHHHHHHH--hhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHH-------HHHHH
Confidence            47888999998  777654         589999999999998  4443   688876322 111111       13567


Q ss_pred             cchhhcccc
Q psy12044        495 DAESVDKDR  503 (767)
Q Consensus       495 ~~e~~~~~~  503 (767)
                      |++...+.+
T Consensus        77 E~~~l~~l~   85 (299)
T d1jpaa_          77 EASIMGQFD   85 (299)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHhCC
Confidence            777666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.81  E-value=0.00093  Score=61.68  Aligned_cols=62  Identities=16%  Similarity=0.173  Sum_probs=26.7

Q ss_pred             CCccEEEccC-CCCCcc----CcccccCCCCCCEEEccCCCCCCCCC----CCCCCCCCCcEEECCCCcCc
Q psy12044         75 VNLQKIYLSR-CRISVI----DSKAFRGLTNLVDLDFSHNVLQTVPS----DTFPDYPSLMKLTLSGNPIK  136 (767)
Q Consensus        75 ~~L~~L~Ls~-N~L~~i----~p~~f~~L~~L~~L~Ls~N~Lt~l~p----~~f~~l~~L~~L~Ls~N~l~  136 (767)
                      ++|+.|+|++ +.|+..    ...++...++|++|+|++|.++....    ..+....+|+.|++++|.+.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            4555555554 233321    12233445555555555555442111    11223344555555555443

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.51  E-value=0.014  Score=49.88  Aligned_cols=83  Identities=25%  Similarity=0.445  Sum_probs=52.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--Ce---eccC-C-CcccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GV---PIQN-E-SMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~---~l~~-~-s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.........+.|+..  +.   .+.. . .........+... .........|.|.++..+|.|
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~sL~i~~~~~~Dsg   85 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTAT-LDADTKQSSLHITASQLSDSA   85 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEEC-BCSSSSEEEEEECSCCGGGCS
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCcccee-ecCcccccccEEcccChhhCc
Confidence            4456788999999999987767778999872  21   1110 0 0000001111111 122335678999999999999


Q ss_pred             ceeEeeccCCC
Q psy12044        334 TFVCVAENQAG  344 (767)
Q Consensus       334 tY~CvA~N~~G  344 (767)
                      .|.|.+....+
T Consensus        86 ~Y~Ca~~~~~~   96 (114)
T d2cdea1          86 SYICVVSDRGS   96 (114)
T ss_dssp             EEEEEEECSCT
T ss_pred             ccceeeecCCC
Confidence            99999876543

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.0042  Score=52.89  Aligned_cols=74  Identities=15%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcc-----------cc-cccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMS-----------AS-ESHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~-----------~~-~~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      .+.+|+++.|.|.........+.|.+.........+.           .. ...+..+      ..+++|.|.++..+|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l------~~ngSL~I~~v~~~D~   83 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII------YSNGSLLFQMITMKDM   83 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEE------CTTSCEEECSCCGGGC
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEE------cccccEEEcCCCchhC
Confidence            3568999999997554456689998843221111110           00 0011111      2246799999999999


Q ss_pred             CceeEeeccCCC
Q psy12044        333 GTFVCVAENQAG  344 (767)
Q Consensus       333 GtY~CvA~N~~G  344 (767)
                      |.|.|.+.+..+
T Consensus        84 G~Y~c~v~~~~~   95 (107)
T d1l6za1          84 GVYTLDMTDENY   95 (107)
T ss_dssp             EEEEEEEEETTE
T ss_pred             EEEEEEEEECCC
Confidence            999999976643

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.03  E-value=0.0033  Score=59.10  Aligned_cols=25  Identities=4%  Similarity=0.045  Sum_probs=23.3

Q ss_pred             CccccCCCCcceEEe-eCCceEEEec
Q psy12044        449 YIIADGHNDMMLYAT-DSGILVATNN  473 (767)
Q Consensus       449 nlIG~GgfG~VYKG~-~dG~~VA~~~  473 (767)
                      +.||+|+||.||+|+ .+|..||+|-
T Consensus         6 ~~IG~G~~g~Vy~a~~~~g~~vAvKi   31 (191)
T d1zara2           6 KLMGEGKESAVFNCYSEKFGECVVKF   31 (191)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEE
T ss_pred             CEeeeCcceEEEEEECCCCCEEEEEE
Confidence            479999999999999 9999999985

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0053  Score=60.83  Aligned_cols=54  Identities=11%  Similarity=0.084  Sum_probs=39.3

Q ss_pred             CCCCCCCccccCCCCcceEEe-eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT-DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~-~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      ++|.-...||+|+||.||||+ .+|..||+|....- +     ..  ..+|.+|++...+.+-
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~-~-----~~--~~~~~~Ev~~~~~l~H   58 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-S-----MS--EDEFIEEAKVMMNLSH   58 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESS-S-----SC--HHHHHHHHHHHHTCCC
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcC-c-----CC--HHHHHHHHHHHHhcCC
Confidence            577777789999999999999 89999998872211 1     11  1257788877776643

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.82  E-value=0.021  Score=48.90  Aligned_cols=81  Identities=12%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--Ce---ecc-CCCccccccc-ceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GV---PIQ-NESMSASESH-AVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~---~l~-~~s~~~~~~~-~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.........+.|++.  +.   .+. .......... .+.. ..........|.|.++..+|.|
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHA-TLHKSSSSFHLQKSSAQLSDSA   86 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEE-CCBGGGTBCCEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeee-eccCCCCeEEeeccccccccCc
Confidence            4456788999999999987777788999872  21   111 1111101111 1111 1112234557999999999999


Q ss_pred             ceeEeeccC
Q psy12044        334 TFVCVAENQ  342 (767)
Q Consensus       334 tY~CvA~N~  342 (767)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1lp9e1          87 LYYCALFLA   95 (115)
T ss_dssp             EEEEEEEEC
T ss_pred             cceEEEEcC
Confidence            999987543

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.76  E-value=0.0036  Score=65.45  Aligned_cols=32  Identities=22%  Similarity=0.221  Sum_probs=28.7

Q ss_pred             CCCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        442 MDKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       442 ~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +++|.-..+||+|+||+||+|.  .+|+.||+|.
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~   36 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKC   36 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEE
Confidence            5778777899999999999999  7899999986

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.017  Score=49.23  Aligned_cols=82  Identities=20%  Similarity=0.212  Sum_probs=46.8

Q ss_pred             ccceeeccccccccccccccc---CCCcEEEeecC--ee---c-cCC-CcccccccceeecccCcceeeeEEEEeeeccC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI---PEAKITWLFDG--VP---I-QNE-SMSASESHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~---P~p~itW~~~g--~~---l-~~~-s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      +..+.+.+|+.++|.|.....   ....+.|.+..  ..   + ... ............. .........|.|.++..+
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT-NFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEE-EETTTTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEe-eeCCCCEEEEEEhhhCcC
Confidence            345678899999999976432   23456787622  11   1 111 1111111111111 112234568999999999


Q ss_pred             CCCceeEeeccCC
Q psy12044        331 DNGTFVCVAENQA  343 (767)
Q Consensus       331 D~GtY~CvA~N~~  343 (767)
                      |.|.|.|.+....
T Consensus        85 DsG~Y~C~v~~~~   97 (116)
T d1xeda_          85 DSGRYKCGLGINS   97 (116)
T ss_dssp             GCEEEEEEESCGG
T ss_pred             CCEEEEEEEEcCC
Confidence            9999999876443

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.51  E-value=0.0044  Score=62.52  Aligned_cols=50  Identities=18%  Similarity=0.118  Sum_probs=35.6

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      |.-...||+|+||+||+|.  .+|+.||+|....         ...++.+..|++...+..
T Consensus         9 Y~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~---------~~~~~~~~~E~~i~~~l~   60 (299)
T d1ckia_           9 YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECV---------KTKHPQLHIESKIYKMMQ   60 (299)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEES---------CTTSCCHHHHHHHHHHST
T ss_pred             EEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEch---------hccCHHHHHHHHHHHHcc
Confidence            4434589999999999998  8899999876211         133556777777666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.49  E-value=0.0021  Score=59.09  Aligned_cols=83  Identities=13%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             CCCccEEEeeC-CCCCCCCchhhhc--cCCCCccEEEccCCCCCccC----cccccCCCCCCEEEccCCCCCCCCC----
Q psy12044         48 DPNTQVLDYTG-NNLKTLHNEKFQK--MGLVNLQKIYLSRCRISVID----SKAFRGLTNLVDLDFSHNVLQTVPS----  116 (767)
Q Consensus        48 ~~~L~~L~Ls~-N~L~~l~~~~f~~--~~L~~L~~L~Ls~N~L~~i~----p~~f~~L~~L~~L~Ls~N~Lt~l~p----  116 (767)
                      .+.|+.|+|++ +.|+.-.-..+..  ...++|+.|+|++|.|+...    ...+....+|+.|++++|.++....    
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            36899999997 5576433222221  14688999999999987642    3456677899999999998764321    


Q ss_pred             CCCCCCCCCcEEEC
Q psy12044        117 DTFPDYPSLMKLTL  130 (767)
Q Consensus       117 ~~f~~l~~L~~L~L  130 (767)
                      ..+...++|+.++|
T Consensus        96 ~~l~~~~~L~~l~L  109 (166)
T d1io0a_          96 EALQSNTSLIELRI  109 (166)
T ss_dssp             HGGGGCSSCCEEEC
T ss_pred             HHHHhCccccEEee
Confidence            22344455554443

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.49  E-value=0.0086  Score=52.15  Aligned_cols=84  Identities=15%  Similarity=0.278  Sum_probs=50.4

Q ss_pred             CCCCccceeecccccccccccccccCCCcEEEee--cCeeccC-------CCcccc-----ccc-ceeecccCcceeeeE
Q psy12044        257 ITPSTFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQN-------ESMSAS-----ESH-AVYSTEEGTEIKKSE  321 (767)
Q Consensus       257 i~~~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~~-------~s~~~~-----~~~-~~~~~~~g~~~~~s~  321 (767)
                      +...+..+.+..|+.++|.|...+.....+.|++  .+..+..       ......     ... ...+...........
T Consensus         4 ~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~   83 (122)
T d1nezg_           4 LRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYV   83 (122)
T ss_dssp             EEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEE
T ss_pred             eEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeE
Confidence            3444556778899999999998887788899987  2322110       000000     000 000000011112357


Q ss_pred             EEEeeeccCCCCceeEeec
Q psy12044        322 LLIYNSNIDDNGTFVCVAE  340 (767)
Q Consensus       322 L~I~nvs~sD~GtY~CvA~  340 (767)
                      |.|.++..+|.|.|.|.+.
T Consensus        84 L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          84 LTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEESSCCGGGCEEEEEEEE
T ss_pred             EEEcccccCCCEEEEeeEe
Confidence            9999999999999999874

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.0046  Score=62.44  Aligned_cols=31  Identities=19%  Similarity=0.216  Sum_probs=27.4

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++|.--..||+|+||+||+|+  .+|+.||+|.
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~   34 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKK   34 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEE
Confidence            566666789999999999999  8899999987

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.18  E-value=0.039  Score=46.82  Aligned_cols=84  Identities=21%  Similarity=0.321  Sum_probs=46.5

Q ss_pred             ccceeecccccccccccccc----cCCCcEEEeec--Ce----ecc---CCC-c---ccccccceeecccCcceeeeEEE
Q psy12044        261 TFYLEIQEGKNVSLLCKVSA----IPEAKITWLFD--GV----PIQ---NES-M---SASESHAVYSTEEGTEIKKSELL  323 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g----~P~p~itW~~~--g~----~l~---~~s-~---~~~~~~~~~~~~~g~~~~~s~L~  323 (767)
                      +..+.+..|..++|.|....    .....+.|.+.  +.    .+.   ... .   ......+..+. .........|.
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~~~~~~~sL~   84 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWV-GDPSWKDGSIV   84 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEEC-CBGGGTBCCEE
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEE-EECCCCEEEEE
Confidence            34567788999999997542    23447899762  11    110   000 0   00000111111 11223345799


Q ss_pred             EeeeccCCCCceeEeeccCCCC
Q psy12044        324 IYNSNIDDNGTFVCVAENQAGS  345 (767)
Q Consensus       324 I~nvs~sD~GtY~CvA~N~~G~  345 (767)
                      |.++...|.|.|.|.+.+..+.
T Consensus        85 I~~v~~~DsG~Y~C~v~~~~~~  106 (119)
T d1neua_          85 IHNLDYSDNGTFTCDVKNPPDI  106 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEC----
T ss_pred             ECCCChHHCEEEEEEEEECCCc
Confidence            9999999999999999876543

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.16  E-value=0.023  Score=47.97  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=48.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--Ceec----cCCCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPI----QNESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l----~~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.++|.|.........+.|+..  +...    ......... ...+....   ......|.|.++..+|.+
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~L~I~~~~~~DsA   83 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG---SGRDYSFSISNLEPEDIA   83 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE---ETTEEEEEECSCCGGGCS
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec---CCCEeeeEehhhcccCCE
Confidence            3456788999999999877666667899872  2211    111110011 11111111   123467999999999999


Q ss_pred             ceeEeecc
Q psy12044        334 TFVCVAEN  341 (767)
Q Consensus       334 tY~CvA~N  341 (767)
                      .|.|.+..
T Consensus        84 ~YyCa~~~   91 (106)
T d1a0ql1          84 TYYCLQYY   91 (106)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEEeC
Confidence            99998643

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=94.09  E-value=0.005  Score=61.66  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=26.4

Q ss_pred             CCCCCCCccccCCCCcceEEe-eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT-DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~-~dG~~VA~~~  473 (767)
                      ++|.--..||+|+||+||||. .+|+.||+|.
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~   33 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKK   33 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEE
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEE
Confidence            444444689999999999999 9999999987

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.97  E-value=0.044  Score=46.77  Aligned_cols=82  Identities=13%  Similarity=0.166  Sum_probs=50.0

Q ss_pred             CccceeecccccccccccccccCCCcEEEee--cCe---ecc-CCC--cccccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGV---PIQ-NES--MSASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~---~l~-~~s--~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      .+..+.+.+|+.++|.|.........+.|+.  .++   .+. ...  ........+.... ........|.|.++..+|
T Consensus         6 ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~D   84 (115)
T d1j8hd1           6 LGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEF-KKSETSFHLTKPSAHMSD   84 (115)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEEC-BGGGTBCCEEESSCCGGG
T ss_pred             CCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEE-CCCCCEEEEeeccccccC
Confidence            3446778899999999998776667899987  222   111 000  0000001111111 112234579999999999


Q ss_pred             CCceeEeeccC
Q psy12044        332 NGTFVCVAENQ  342 (767)
Q Consensus       332 ~GtY~CvA~N~  342 (767)
                      .|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (115)
T d1j8hd1          85 AAEYFCAVSES   95 (115)
T ss_dssp             CEEEEEEEESS
T ss_pred             CccceeeecCC
Confidence            99999988654

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.0067  Score=60.62  Aligned_cols=30  Identities=20%  Similarity=0.189  Sum_probs=25.6

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .|.--..||+|+||+||+|+  .+|+.||+|.
T Consensus         3 ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~   34 (292)
T d1unla_           3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKR   34 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEE
T ss_pred             CCEeeeEEecCcCeEEEEEEECCCCcEEEEEE
Confidence            34444589999999999999  8999999987

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.92  E-value=0.014  Score=49.88  Aligned_cols=84  Identities=21%  Similarity=0.365  Sum_probs=51.5

Q ss_pred             CccceeecccccccccccccccCCCcEEEee--cCeeccC-----CCcccccccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQN-----ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~~-----~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      .+..+.+..|+.++|.|.........+.|++  .+.....     .............. .........|.|.++..+|.
T Consensus         6 ~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~Ds   84 (113)
T d2bnqd1           6 IPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNAS-LDKSSGRSTLYIAASQPGDS   84 (113)
T ss_dssp             SSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEE-EETTTTEEEEEESSCCGGGC
T ss_pred             eCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeee-eccCCCEEEeeeecCCCCCC
Confidence            3445778899999999998777777889987  2221110     00000000111111 11123456899999999999


Q ss_pred             CceeEeeccCCC
Q psy12044        333 GTFVCVAENQAG  344 (767)
Q Consensus       333 GtY~CvA~N~~G  344 (767)
                      |.|.|.+....+
T Consensus        85 g~YyCa~~~~~~   96 (113)
T d2bnqd1          85 ATYLCAVRPTSG   96 (113)
T ss_dssp             EEEEEEEEESSS
T ss_pred             cEEeEeEecCCC
Confidence            999998865443

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.0087  Score=59.58  Aligned_cols=50  Identities=10%  Similarity=0.064  Sum_probs=34.1

Q ss_pred             CCCccccCCCCcceEEe-eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        447 GGYIIADGHNDMMLYAT-DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       447 ~~nlIG~GgfG~VYKG~-~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      -...||+|+||.||||+ .+|+.||+|....-+ ..    .+   +|.+|++...+.+-
T Consensus        17 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~----~~---~~~~E~~~l~~l~H   67 (272)
T d1qpca_          17 LVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MS----PD---AFLAEANLMKQLQH   67 (272)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SC----HH---HHHHHHHHHHHCCC
T ss_pred             EeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CC----HH---HHHHHHHHHHhCCC
Confidence            34479999999999999 888999998732211 10    01   36677777666543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.0056  Score=63.39  Aligned_cols=29  Identities=31%  Similarity=0.405  Sum_probs=25.2

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |...++||+|+||+||+|+  .+|+.||+|.
T Consensus        22 Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~   52 (350)
T d1q5ka_          22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKK   52 (350)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred             cEeeeEEeeCcCeEEEEEEECCCCCEEEEEE
Confidence            3445689999999999999  7899999987

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.056  Score=45.34  Aligned_cols=81  Identities=10%  Similarity=0.190  Sum_probs=46.8

Q ss_pred             cceeecccccccccccccccC--CCcEEEee--cCee---c-cCCCcccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIP--EAKITWLF--DGVP---I-QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P--~p~itW~~--~g~~---l-~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      ..+...+|+.++|.|......  ...+.|.+  .+..   + ..........................|.|.++..+|.|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            346788999999999865332  33567876  2221   1 11111111111111111122334578999999999999


Q ss_pred             ceeEeeccC
Q psy12044        334 TFVCVAENQ  342 (767)
Q Consensus       334 tY~CvA~N~  342 (767)
                      .|.|.....
T Consensus        84 ~Y~C~v~~~   92 (108)
T d1hkfa_          84 HYWCRIYRP   92 (108)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEecC
Confidence            999987643

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.016  Score=48.57  Aligned_cols=81  Identities=12%  Similarity=0.146  Sum_probs=48.9

Q ss_pred             ceeecccccccccccccccC----CCcEEEeecCeeccCCCc-----ccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIP----EAKITWLFDGVPIQNESM-----SASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P----~p~itW~~~g~~l~~~s~-----~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      .++...|+.++|.|......    ...+.|......+.....     ......+..+...    ...+|.|.+++.+|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~----g~~sL~I~~v~~~D~G   78 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT----NNLSIVILALRPSDEG   78 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEEST----TTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccC----CcEEEEECcCChHHCe
Confidence            45678899999999765432    235677776544321110     0000111222111    2457999999999999


Q ss_pred             ceeEeeccCCCCcc
Q psy12044        334 TFVCVAENQAGSTS  347 (767)
Q Consensus       334 tY~CvA~N~~G~s~  347 (767)
                      .|.|.+.+..+...
T Consensus        79 ~Y~C~V~~~~~~~~   92 (105)
T d1dr9a1          79 TYECVVLKYEKDAF   92 (105)
T ss_dssp             EEEEEEEECCTTSC
T ss_pred             EEEEEEEeCCCCCe
Confidence            99999876655444

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.012  Score=58.97  Aligned_cols=53  Identities=8%  Similarity=0.185  Sum_probs=34.8

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      +|.-...||+|+||+||||+  .+|+.||+|....- ....       -+|.+|++...+.+-
T Consensus        18 ~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~-~~~~-------~~~~~E~~il~~l~H   72 (287)
T d1opja_          18 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEV-------EEFLKEAAVMKEIKH   72 (287)
T ss_dssp             GEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTT-CSCH-------HHHHHHHHHHHHCCC
T ss_pred             HeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCc-cchH-------HHHHHHHHHHHhCCC
Confidence            34344579999999999999  67999999873211 1111       135667766665543

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.0091  Score=60.11  Aligned_cols=24  Identities=17%  Similarity=0.339  Sum_probs=22.6

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||+||||.  .+|+.||+|.
T Consensus         5 ~lG~G~fg~Vy~~~~~~~~~~vAvK~   30 (299)
T d1ua2a_           5 FLGEGQFATVYKARDKNTNQIVAIKK   30 (299)
T ss_dssp             EEEEETTEEEEEEECSSCCSEEEEEE
T ss_pred             EeccCcCeEEEEEEECCCCcEEEEEE
Confidence            79999999999999  7899999987

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.0082  Score=59.39  Aligned_cols=53  Identities=15%  Similarity=0.083  Sum_probs=36.1

Q ss_pred             CCCCCCccccCCCCcceEEe-eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        444 KVNGGYIIADGHNDMMLYAT-DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~-~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      +|.-...||+|+||.||||. .+|..||+|....-   .     ....+|++|++...+.+-
T Consensus         6 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~---~-----~~~~~~~~E~~~l~~l~H   59 (263)
T d1sm2a_           6 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG---A-----MSEEDFIEEAEVMMKLSH   59 (263)
T ss_dssp             CEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS---S-----SCHHHHHHHHHHHHHCCC
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC---c-----CcHHHHHHHHHHHHhcCC
Confidence            34444579999999999999 88999999872211   0     011247777777766543

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.01  Score=59.01  Aligned_cols=26  Identities=15%  Similarity=0.253  Sum_probs=23.6

Q ss_pred             CCccccCCCCcceEEe--eCCceEEEec
Q psy12044        448 GYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       448 ~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ..+||+|+||+||+|+  .+|+.||+|.
T Consensus         9 ~~~lG~G~fg~Vy~a~~~~~~~~vAvK~   36 (273)
T d1xwsa_           9 GPLLGSGGFGSVYSGIRVSDNLPVAIKH   36 (273)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred             eEEEeeCCCeEEEEEEECCCCCEEEEEE
Confidence            3489999999999999  7899999987

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.014  Score=59.07  Aligned_cols=24  Identities=21%  Similarity=0.066  Sum_probs=22.5

Q ss_pred             ccccCCCCcceEEeeCCceEEEec
Q psy12044        450 IIADGHNDMMLYATDSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~~dG~~VA~~~  473 (767)
                      .||+|+||.||||+.+|+.||+|.
T Consensus        10 ~iG~G~fg~Vy~~~~~g~~vAvK~   33 (303)
T d1vjya_          10 SIGKGRFGEVWRGKWRGEEVAVKI   33 (303)
T ss_dssp             EEECCSSSEEEEEEETTEEEEEEE
T ss_pred             EEeeCCCeEEEEEEECCEEEEEEE
Confidence            699999999999998899999987

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.0086  Score=61.23  Aligned_cols=31  Identities=10%  Similarity=0.128  Sum_probs=26.1

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++|.-...||+|+||+||||+  .+|+.||+|.
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~   34 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKA   34 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEE
Confidence            345445689999999999999  7899999987

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.51  E-value=0.037  Score=46.77  Aligned_cols=79  Identities=18%  Similarity=0.256  Sum_probs=49.5

Q ss_pred             CccceeecccccccccccccccCCCcEEEee--cCe---eccC-CCccccc-ccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGV---PIQN-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~---~l~~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      .+..+.+..|+.++|.|.........+.|+.  .+.   .+.. ....... ...+....   ......|.|.++..+|.
T Consensus         7 sP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~---~~~~~~L~I~~~~~~Ds   83 (107)
T d1ospl1           7 SSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSD---SGKDYTLSITSLQTEDV   83 (107)
T ss_dssp             CCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC---SSSSEEEEESSCCGGGC
T ss_pred             eCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceec---CCCeEEeEEcccccccC
Confidence            3456778899999999988766666799988  222   1111 1111111 11122211   12346799999999999


Q ss_pred             CceeEeecc
Q psy12044        333 GTFVCVAEN  341 (767)
Q Consensus       333 GtY~CvA~N  341 (767)
                      +.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1ospl1          84 ATYFCQQYW   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             CcEEEeecc
Confidence            999998653

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.0097  Score=59.54  Aligned_cols=56  Identities=16%  Similarity=0.153  Sum_probs=34.8

Q ss_pred             CCCCCCCccccCCCCcceEEe-e-CC----ceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT-D-SG----ILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~-~-dG----~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      ..|...++||+|+||.||||. . ++    ..||+|....-...      +.--+|.+|++...+.+-
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~------~~~~~~~~E~~il~~l~H   68 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTE------KQRVDFLGEAGIMGQFSH   68 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCH------HHHHHHHHHHHHHHTCCC
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccCh------HHHHHHHHHHHHHHhcCC
Confidence            356677899999999999998 3 33    46898873211111      111146777777766543

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.0082  Score=60.93  Aligned_cols=30  Identities=23%  Similarity=0.161  Sum_probs=25.8

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.--..||+|+||+||+|.  .+|+.||+|.
T Consensus        11 rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~   42 (318)
T d3blha1          11 KYEKLAKIGQGTFGEVFKARHRKTGQKVALKK   42 (318)
T ss_dssp             GEEEEEEEEECSSSEEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEEEecCcCeEEEEEEECCCCCEEEEEE
Confidence            44445689999999999999  7999999986

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.0074  Score=60.08  Aligned_cols=30  Identities=13%  Similarity=0.119  Sum_probs=25.7

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||+||||.  .+|+.||+|.
T Consensus         5 dy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~   36 (269)
T d2java1           5 DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKE   36 (269)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred             hCEEeEEEecCCCeEEEEEEECCCCCEEEEEE
Confidence            44444689999999999998  7899999987

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.0048  Score=62.15  Aligned_cols=48  Identities=15%  Similarity=0.177  Sum_probs=33.9

Q ss_pred             CccccCCCCcceEEe-eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        449 YIIADGHNDMMLYAT-DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       449 nlIG~GgfG~VYKG~-~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      ..||+|+||.||||+ .++..||+|...... .       ...+|++|++...+.+-
T Consensus        23 ~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~-~-------~~~~~~~E~~~l~~l~h   71 (285)
T d1fmka3          23 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-M-------SPEAFLQEAQVMKKLRH   71 (285)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEECCTTS-S-------CHHHHHHHHHHHHHCCC
T ss_pred             eEEeeCCCeEEEEEEECCCCEEEEEEECccc-C-------CHHHHHHHHHHHHhccc
Confidence            379999999999999 888889998732221 1       01247778877766554

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.23  E-value=0.015  Score=58.37  Aligned_cols=30  Identities=20%  Similarity=0.148  Sum_probs=24.9

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.=...||+||||+||+|+  .+|+.||+|.
T Consensus         6 ~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~   37 (293)
T d1csna_           6 HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKF   37 (293)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEEEecCCCeEEEEEEECCCCCEEEEEE
Confidence            33334579999999999999  7899999876

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.20  E-value=0.0095  Score=60.57  Aligned_cols=55  Identities=20%  Similarity=0.201  Sum_probs=35.1

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      |..-..||+|+||+||||.  .+|+.||++....-....    .+.-.++++|++...+.+
T Consensus        17 y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~----~~~~~~~~~Ei~il~~l~   73 (309)
T d1u5ra_          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS----NEKWQDIIKEVRFLQKLR   73 (309)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCH----HHHHHHHHHHHHHHTTCC
T ss_pred             cEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccC----HHHHHHHHHHHHHHHHCC
Confidence            4445679999999999998  889999998722111110    011123666776666543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.19  E-value=0.028  Score=47.61  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=48.4

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCeec----cCCCcccccc-cceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPI----QNESMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l----~~~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.++|.|.........+.|++  .++..    .......... ..+....   ......|.|.++..+|.|
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~l~~~Dsa   84 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR---SGSDYSLTISSLESEDFA   84 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCS
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc---cCCEEEEEEhhhcccCCe
Confidence            345667899999999998777677789987  33221    1111110111 1111111   122468999999999999


Q ss_pred             ceeEeecc
Q psy12044        334 TFVCVAEN  341 (767)
Q Consensus       334 tY~CvA~N  341 (767)
                      +|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1c5cl1          85 DYYCLQYA   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEecCc
Confidence            99997653

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=93.15  E-value=0.028  Score=47.41  Aligned_cols=79  Identities=24%  Similarity=0.243  Sum_probs=47.4

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--CeeccC---C-Ccc-cccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQN---E-SMS-ASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~~---~-s~~-~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.........+.|+..  +.....   . ... ........... ........|.|.++..+|.|
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~Dsa   84 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF-NKREKKLSLHIADSQPGDSA   84 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE-ETGGGEEEEEESSCCTTSCS
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEE-CCCCCeeEeEeccCCCCCce
Confidence            3456778999999999877665567889872  221110   0 000 00000111111 11223568999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (110)
T d1u3ha1          85 TYFCAAS   91 (110)
T ss_dssp             EEEECCE
T ss_pred             eEeeeec
Confidence            9999875

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.0093  Score=60.92  Aligned_cols=31  Identities=16%  Similarity=0.284  Sum_probs=26.9

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++|.--..||+|+||+||||.  .+|+.||+|.
T Consensus         6 d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~   38 (322)
T d1s9ja_           6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKL   38 (322)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEETTTTEEEEEEE
T ss_pred             cCCEEEEEEecCCCeEEEEEEECCCCcEEEEEE
Confidence            455555689999999999999  7899999987

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.08  E-value=0.0059  Score=61.12  Aligned_cols=30  Identities=10%  Similarity=0.008  Sum_probs=25.7

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||+||||.  .+|+.||+|.
T Consensus         4 ~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~   35 (277)
T d1phka_           4 NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKI   35 (277)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred             cCEEceEEecCcCeEEEEEEECCCCCEEEEEE
Confidence            34445689999999999999  7999999987

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.019  Score=57.52  Aligned_cols=48  Identities=15%  Similarity=0.200  Sum_probs=33.1

Q ss_pred             CccccCCCCcceEEe--eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        449 YIIADGHNDMMLYAT--DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      ..||+|+||+||||.  .+|..||+|....-+....       -.+.+|++...+.+
T Consensus        18 ~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~-------~~~~~E~~il~~l~   67 (288)
T d2jfla1          18 GELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEEL-------EDYMVEIDILASCD   67 (288)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGG-------GGTHHHHHHHHHCC
T ss_pred             EEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHH-------HHHHHHHHHHHhCC
Confidence            369999999999999  7899999987432222222       23556676665543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=93.01  E-value=0.03  Score=46.86  Aligned_cols=75  Identities=19%  Similarity=0.316  Sum_probs=46.9

Q ss_pred             ceeecccccccccccccccCCCcEEEeec--Ceec---cCC-Ccccccc-cceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPI---QNE-SMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l---~~~-s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      .+.+..|+.++|.|.........+.|+..  +...   ... ....... ..+..   ........|.|.++..+|.+.|
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSS---STSGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEE---EEETTEEEEEETTCCGGGCEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEE---CCCCCccCceEcCcchhHCceE
Confidence            56788999999999887766677899872  2211   111 0000000 11111   1122346899999999999999


Q ss_pred             eEeec
Q psy12044        336 VCVAE  340 (767)
Q Consensus       336 ~CvA~  340 (767)
                      .|.+.
T Consensus        84 yCA~~   88 (103)
T d8faba1          84 YCQAW   88 (103)
T ss_dssp             EEEEE
T ss_pred             Eeeec
Confidence            99764

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.00  E-value=0.0098  Score=60.66  Aligned_cols=31  Identities=10%  Similarity=-0.004  Sum_probs=26.4

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++|.-...||+|+||+||+|.  .+|+.||+|.
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~   36 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKV   36 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEE
Confidence            455555689999999999999  7899999886

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.00  E-value=0.024  Score=47.92  Aligned_cols=78  Identities=18%  Similarity=0.290  Sum_probs=48.5

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCeecc----CCCcccccc-cceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQ----NESMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~----~~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.++|.|.........+.|+.  .+....    ......... ..+...   .......|.|.++..+|.|
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~---~~~~~~~L~I~~~~~~Dsa   84 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSS---GTGTDFVFTIENTLSEDVG   84 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEe---CCCCeeeecccCCccccCE
Confidence            345678899999999987766667799986  232211    111111111 111111   1123467999999999999


Q ss_pred             ceeEeecc
Q psy12044        334 TFVCVAEN  341 (767)
Q Consensus       334 tY~CvA~N  341 (767)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (106)
T d1i8ka_          85 DYYCLQSF   92 (106)
T ss_dssp             EEEEEECS
T ss_pred             EEeEecCc
Confidence            99998653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.98  E-value=0.025  Score=47.80  Aligned_cols=78  Identities=19%  Similarity=0.293  Sum_probs=49.0

Q ss_pred             CccceeecccccccccccccccCCCcEEEeec--Ce---ecc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GV---PIQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~---~l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      .+..+.+..|+.++|.|.........+.|+..  +.   .+. ........ ...+...   .......|.|.++..+|.
T Consensus         7 sP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           7 SPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGS---GSATDFTLTISSVQADDD   83 (107)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGGC
T ss_pred             cCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEee---ccCCeeecEEHhheecCC
Confidence            34567788999999999987776677999872  21   111 11111111 1111111   122356799999999999


Q ss_pred             CceeEeec
Q psy12044        333 GTFVCVAE  340 (767)
Q Consensus       333 GtY~CvA~  340 (767)
                      +.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d1kcvl1          84 ADYYCGQS   91 (107)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEec
Confidence            99999864

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=92.97  E-value=0.029  Score=47.89  Aligned_cols=80  Identities=13%  Similarity=0.190  Sum_probs=48.6

Q ss_pred             CccceeecccccccccccccccCCCcEEEee--cCee---cc---CCCcccccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVP---IQ---NESMSASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~---l~---~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      .+..+.+..|+.++|.|.........+.|+.  .+..   +.   .............+... .......|.|.++..+|
T Consensus         6 ~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~D   84 (115)
T d1i9ea_           6 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFS-KSNSSFHLRKASVHWSD   84 (115)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECB-TTTTBCCEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEe-CcCCEEEEecccccccc
Confidence            3446788899999999987766667778886  2221   11   01111011111111111 12234679999999999


Q ss_pred             CCceeEeec
Q psy12044        332 NGTFVCVAE  340 (767)
Q Consensus       332 ~GtY~CvA~  340 (767)
                      .|.|.|.+.
T Consensus        85 sg~YyCa~~   93 (115)
T d1i9ea_          85 SAVYFCAVS   93 (115)
T ss_dssp             CEEEEEEEE
T ss_pred             cceeccccc
Confidence            999999764

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.0094  Score=59.12  Aligned_cols=31  Identities=16%  Similarity=0.204  Sum_probs=25.8

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++|.-...||+|+||+||+|+  .+|+.||+|.
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~   38 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKV   38 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEE
Confidence            344445589999999999999  7899999876

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.017  Score=57.92  Aligned_cols=28  Identities=14%  Similarity=0.230  Sum_probs=24.3

Q ss_pred             CCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        446 NGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       446 s~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .-...||+|+||+||||.  .+|+.||+|.
T Consensus        13 ~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~   42 (293)
T d1jksa_          13 DTGEELGSGQFAVVKKCREKSTGLQYAAKF   42 (293)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred             EEeEEEecCCCeEEEEEEECCCCCEEEEEE
Confidence            334579999999999999  7899999987

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.018  Score=59.13  Aligned_cols=29  Identities=21%  Similarity=0.187  Sum_probs=22.1

Q ss_pred             CCCccccCCCCcceEEe--eCCceEEEeccc
Q psy12044        447 GGYIIADGHNDMMLYAT--DSGILVATNNMN  475 (767)
Q Consensus       447 ~~nlIG~GgfG~VYKG~--~dG~~VA~~~~~  475 (767)
                      --..||+|+||+||||+  .+|+.||+|..+
T Consensus        12 ~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~   42 (345)
T d1pmea_          12 NLSYIGEGAYGMVCSAYDNVNKVRVAIKKIS   42 (345)
T ss_dssp             EEEECC---CCCEEEEEETTTCSEEEEEEEC
T ss_pred             EEEEEeeccCeEEEEEEECCCCcEEEEEEEe
Confidence            33589999999999998  899999998843

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.83  E-value=0.044  Score=46.77  Aligned_cols=81  Identities=16%  Similarity=0.297  Sum_probs=48.0

Q ss_pred             ccceeeccccccccccccccc-CCCcEEEee--cCee---ccC--CCccccc-ccceeecccCcceeeeEEEEeeeccCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI-PEAKITWLF--DGVP---IQN--ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~--~g~~---l~~--~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      +..+.+.+|+.++|.|..... ....+.|++  .+..   +..  ....... ...+.... ........|.|.++..+|
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~-~~~~~~~~L~I~~~~~~D   84 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQ-LPNRHDFHMNILDTRRND   84 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEE-CTTSSEEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEE-eCCCCEEEEEECccCcCC
Confidence            445778899999999987554 445688987  2221   110  0000001 11111111 112234679999999999


Q ss_pred             CCceeEeeccC
Q psy12044        332 NGTFVCVAENQ  342 (767)
Q Consensus       332 ~GtY~CvA~N~  342 (767)
                      .|.|.|.+...
T Consensus        85 sg~YyCa~~~~   95 (114)
T d3bp5a1          85 SGIYLCGAISL   95 (114)
T ss_dssp             CEEEEEEEECS
T ss_pred             CeEEEEEEEeC
Confidence            99999987643

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.76  E-value=0.037  Score=46.76  Aligned_cols=78  Identities=21%  Similarity=0.299  Sum_probs=48.5

Q ss_pred             CccceeecccccccccccccccCCCcEEEee--cCee---ccC-CCccccc-ccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVP---IQN-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~---l~~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      .+..+.+..|+.++|.|.........+.|++  .+..   +.. ....... ...+...   .......|.|.++..+|.
T Consensus         7 ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~---~~~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           7 SQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGS---GSGTDFTLTINNVQSEDL   83 (107)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEESSCCGGGC
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeec---CCCCeeeeeechhheecc
Confidence            3455778899999999987666666799987  2221   111 1111111 1111111   112346799999999999


Q ss_pred             CceeEeec
Q psy12044        333 GTFVCVAE  340 (767)
Q Consensus       333 GtY~CvA~  340 (767)
                      ++|.|.+.
T Consensus        84 A~YyCa~~   91 (107)
T d1mexl1          84 AEYFCQQY   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeEEEeEC
Confidence            99999764

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.01  Score=61.09  Aligned_cols=32  Identities=13%  Similarity=0.166  Sum_probs=27.9

Q ss_pred             CCCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        442 MDKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       442 ~nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +++|.--.+||+|+||+||+|.  .+|+.||+|.
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~   37 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKI   37 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEE
Confidence            3566666789999999999999  8999999876

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.71  E-value=0.011  Score=59.69  Aligned_cols=55  Identities=15%  Similarity=0.117  Sum_probs=36.3

Q ss_pred             CCCCCCCccccCCCCcceEEe-e------CCceEEEeccccCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT-D------SGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~-~------dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      ++|.-...||+|+||+||||+ .      +|+.||+|....-..      .+.--++.+|++..++.+
T Consensus        13 ~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~------~~~~~~~~~E~~il~~l~   74 (301)
T d1lufa_          13 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS------ADMQADFQREAALMAEFD   74 (301)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC------HHHHHHHHHHHHHHHTCC
T ss_pred             HHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcC------hHHHHHHHHHHHHHHhcC
Confidence            567777789999999999997 3      468899987321100      111224567777766554

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=92.67  E-value=0.039  Score=45.27  Aligned_cols=72  Identities=22%  Similarity=0.321  Sum_probs=42.6

Q ss_pred             cccccccccccccCCCcEEEee--cCee---ccCCCcccc-cccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        269 GKNVSLLCKVSAIPEAKITWLF--DGVP---IQNESMSAS-ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       269 G~~vsL~C~a~g~P~p~itW~~--~g~~---l~~~s~~~~-~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      |+.++|.|.........+.|++  +++.   +........ ....+.. ..........|.|.++..+|.|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~-~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTA-QLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEE-EEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEE-EecCCCCEEeEEeeccccCcCccceeeEec
Confidence            6788999987777777899987  2221   111000000 0001111 111222346899999999999999998754

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=92.63  E-value=0.033  Score=47.21  Aligned_cols=80  Identities=19%  Similarity=0.218  Sum_probs=48.5

Q ss_pred             CccceeecccccccccccccccCCCcEEEee--cCee---ccC-CCcccccc-cceeecccCcceeeeEEEEeeeccCCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVP---IQN-ESMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~---l~~-~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      .+..+.+.+|+.++|.|.........+.|+.  .++.   +.. ........ ..+... .........|.|.++..+|.
T Consensus         6 ~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~~~~~Ds   84 (111)
T d1bd2d1           6 NSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVF-LNKSAKHLSLHIVPSQPGDS   84 (111)
T ss_dssp             CCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEE-EETTTTEEEEEESSCCGGGC
T ss_pred             cCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEE-EEccCCEEEEEECCCccccc
Confidence            3445677899999999987766666788887  2321   110 00000000 011111 11223467899999999999


Q ss_pred             CceeEeec
Q psy12044        333 GTFVCVAE  340 (767)
Q Consensus       333 GtY~CvA~  340 (767)
                      |.|.|.+.
T Consensus        85 a~YyCa~~   92 (111)
T d1bd2d1          85 AVYFCAAM   92 (111)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeecc
Confidence            99999775

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.023  Score=57.09  Aligned_cols=30  Identities=23%  Similarity=0.158  Sum_probs=25.6

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .|.--..||+|+||+||||.  .+|+.||+|.
T Consensus        21 ~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~   52 (293)
T d1yhwa1          21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQ   52 (293)
T ss_dssp             TBCSCEECCCSSSCEEEEEEBTTTCCEEEEEE
T ss_pred             ccEEEEEEecCcCcEEEEEEECCCCCEEEEEE
Confidence            34445579999999999998  8899999987

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.62  E-value=0.05  Score=46.04  Aligned_cols=78  Identities=18%  Similarity=0.300  Sum_probs=48.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--Ce---ecc-CCCccccccc-ceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GV---PIQ-NESMSASESH-AVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~---~l~-~~s~~~~~~~-~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.++|.|.........+.|+..  +.   .+. .......+.. .+....   ......|.|.++..+|.+
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~l~~~Dsa   84 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG---SGTDFTLTISSLEPEDFA   84 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---SSSEEEEEECSCCTTCCS
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccC---CCCEEEeEeeeeEeccce
Confidence            4456788999999999987766667889872  22   111 1111111111 111111   123467999999999999


Q ss_pred             ceeEeecc
Q psy12044        334 TFVCVAEN  341 (767)
Q Consensus       334 tY~CvA~N  341 (767)
                      .|.|.+..
T Consensus        85 ~YyCA~~~   92 (108)
T d1jhll_          85 MYICQQHN   92 (108)
T ss_dssp             EEEEEECS
T ss_pred             EEEEeeCC
Confidence            99997654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=92.55  E-value=0.037  Score=45.78  Aligned_cols=79  Identities=27%  Similarity=0.457  Sum_probs=46.0

Q ss_pred             eeecccccccccccccccCCCcEEEee--cCeeccCCC-ccc---c-cccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        264 LEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQNES-MSA---S-ESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~~~s-~~~---~-~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +.+.+|+.++|.|.... ....+.|++  .+......- ...   . ....+... .........|.|.++..+|.|.|.
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~-~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVT-LDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBC-CBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceee-ccCcceecccCcCCCCcccCEEEe
Confidence            45778999999998754 345789987  222111000 000   0 00011111 111223467999999999999999


Q ss_pred             EeeccCCC
Q psy12044        337 CVAENQAG  344 (767)
Q Consensus       337 CvA~N~~G  344 (767)
                      |.+....|
T Consensus        81 CA~~~~~g   88 (96)
T d1ymmd1          81 CATDTTSG   88 (96)
T ss_dssp             EEEEETTS
T ss_pred             EeEecCCC
Confidence            98765433

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=92.40  E-value=0.04  Score=46.49  Aligned_cols=77  Identities=17%  Similarity=0.217  Sum_probs=48.0

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCe---eccC-CCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGV---PIQN-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~---~l~~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.++|.|.........+.|+.  .+.   .+.. ....... ...+...   .......|.|.++..+|.+
T Consensus         8 P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~l~~~DsA   84 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGS---GSGTEFTLTISTLRPEDFA   84 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEESSCCGGGCS
T ss_pred             CCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEe---ccCCEEEEEeccceeCcCc
Confidence            445678899999999998766667888987  222   1211 1100011 1111111   1223567999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      +|.|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d1tjgl1          85 TYYCQQL   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEC
Confidence            9999754

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.042  Score=45.53  Aligned_cols=70  Identities=11%  Similarity=0.051  Sum_probs=43.0

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .+..|++++|.|... .+...+.|.+++.........         ...........+.|.+++..|.|.|.|...+..+
T Consensus        17 ~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~---------~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~   86 (99)
T d1ucta1          17 VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGR---------RLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHY   86 (99)
T ss_dssp             EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSE---------ECC----CCCEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccc---------cccCCCCceEEEEecCCCHHHCceEEEEEECCCc
Confidence            467899999999865 345567777654211100000         0001112235688999999999999999876544

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.021  Score=58.60  Aligned_cols=29  Identities=17%  Similarity=0.126  Sum_probs=18.7

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |.--..||+|+||+||+|.  .+|+.||+|.
T Consensus        20 Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~   50 (346)
T d1cm8a_          20 YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKK   50 (346)
T ss_dssp             EEEEEEC------CEEEEEETTTCCEEEEEE
T ss_pred             EEEEEEEecCCCeEEEEEEECCCCCEEEEEE
Confidence            3333579999999999999  7899999988

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.024  Score=58.05  Aligned_cols=30  Identities=17%  Similarity=0.176  Sum_probs=25.3

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .|.--..||+|+||+||+|.  .+|+.||+|.
T Consensus        19 rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~   50 (348)
T d2gfsa1          19 RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKK   50 (348)
T ss_dssp             TEEEEEECGGGTTSSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEEEecCCCeEEEEEEECCCCCEEEEEE
Confidence            34334579999999999998  8899999987

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.37  E-value=0.049  Score=45.96  Aligned_cols=77  Identities=17%  Similarity=0.203  Sum_probs=47.4

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCee---cc-CCCcccccc-cceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVP---IQ-NESMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~---l~-~~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.++|.|.........+.|+.  .+..   +. ......... ..+...   .......|.|.++..+|.|
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~---~~~~~~~L~I~~~~~~Dsa   84 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGS---GSGTDYSLTISNLEPEDIA   84 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCE---EETTEEEEECSCCCSCCCS
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEE---ccCCEEEEEEeEeeecCCC
Confidence            344667889999999987776666789987  2221   11 111111111 111111   1122468999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      +|.|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d3cx5k1          85 TYFCQHH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             cEEeeeC
Confidence            9999764

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.022  Score=56.49  Aligned_cols=24  Identities=17%  Similarity=0.116  Sum_probs=22.0

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .||+|+||+||||+  .+|..||++.
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~va~K~   41 (270)
T d1t4ha_          16 EIGRGSFKTVYKGLDTETTVEVAWCE   41 (270)
T ss_dssp             EEEECSSEEEEEEEETTTCCEEEEEE
T ss_pred             EEecCcCcEEEEEEECCCCeEEEEEE
Confidence            69999999999999  7899999876

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.34  E-value=0.012  Score=58.61  Aligned_cols=54  Identities=7%  Similarity=-0.033  Sum_probs=34.4

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      +|.-...||+|+||+||+|+  .+|+.||+|....-      ...+..-++.+|++...+.+
T Consensus         6 dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~------~~~~~~~~~~~Ei~~l~~l~   61 (271)
T d1nvra_           6 DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMK------RAVDCPENIKKEICINKMLN   61 (271)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------------CHHHHHHHHHTCC
T ss_pred             ceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehh------hcchHHHHHHHHHHHHHhCC
Confidence            44444689999999999999  78999999873211      11122234667776665543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=92.33  E-value=0.055  Score=46.41  Aligned_cols=84  Identities=14%  Similarity=0.208  Sum_probs=50.3

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCeeccC--------CCcccccccceeecccCcceeeeEEEEeeeccC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQN--------ESMSASESHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~~--------~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      +..+.+..|+.++|.|.........+.|++  .+..+.-        ............+...........|.|.++..+
T Consensus         8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   87 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPE   87 (118)
T ss_dssp             CSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGG
T ss_pred             CCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccc
Confidence            345677889999999998776677899987  3321110        000001110001111111223467999999999


Q ss_pred             CCCceeEeeccCCC
Q psy12044        331 DNGTFVCVAENQAG  344 (767)
Q Consensus       331 D~GtY~CvA~N~~G  344 (767)
                      |.+.|.|.+....+
T Consensus        88 Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          88 DSGFYVCSALAGSG  101 (118)
T ss_dssp             GCEEEEEEEECSSC
T ss_pred             cCceEEEEEecCCC
Confidence            99999998864433

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.32  E-value=0.033  Score=47.05  Aligned_cols=77  Identities=21%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCeecc----CCCcccccc-cceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQ----NESMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~----~~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.++|.|.........+.|+.  .+....    ......... ..+...   .......|.|.++..+|.|
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~---~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGS---GSGTDFTLSINSVETEDFG   84 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceec---ccCCEEEEEEcccCcCCCE
Confidence            445678899999999987766667799987  222111    000000111 111111   1223468999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d1j1pl_          85 MYFCQQA   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9999764

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.31  E-value=0.014  Score=60.44  Aligned_cols=31  Identities=16%  Similarity=0.168  Sum_probs=26.2

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ++|.--..||+|+||+||+|.  .+|+.||+|.
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~   73 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI   73 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEE
Confidence            345555689999999999998  7899999986

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.025  Score=58.03  Aligned_cols=24  Identities=17%  Similarity=0.077  Sum_probs=22.5

Q ss_pred             ccccCCCCcceEEe--eCCceEEEec
Q psy12044        450 IIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       450 lIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +||+|+||+||+|.  .+|+.||+|.
T Consensus        19 ~lG~G~fg~Vy~a~~~~~~~~vAiK~   44 (335)
T d2ozaa1          19 VLGLGINGKVLQIFNKRTQEKFALKM   44 (335)
T ss_dssp             EEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred             EeeeccCeEEEEEEECCCCCEEEEEE
Confidence            69999999999998  8899999987

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.026  Score=56.61  Aligned_cols=29  Identities=17%  Similarity=0.164  Sum_probs=24.8

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |.-..+||+|+||+||+|.  .+|+.||+|.
T Consensus        10 y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~   40 (288)
T d1uu3a_          10 FKFGKILGEGSFSTVVLARELATSREYAIKI   40 (288)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEEeeCCCeEEEEEEECCCCCEEEEEE
Confidence            4444589999999999998  7899999886

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.17  E-value=0.024  Score=56.25  Aligned_cols=29  Identities=21%  Similarity=-0.001  Sum_probs=24.8

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |.-...||+|+||.||||+  .+|+.||+|.
T Consensus         9 Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~   39 (277)
T d1o6ya_           9 YELGEILGFGGMSEVHLARDLRLHRDVAVKV   39 (277)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred             eEEeEEEeeCCCeEEEEEEECCCCCEEEEEE
Confidence            3334589999999999999  7899999987

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.15  E-value=0.023  Score=58.34  Aligned_cols=25  Identities=20%  Similarity=0.084  Sum_probs=23.2

Q ss_pred             CccccCCCCcceEEe--eCCceEEEec
Q psy12044        449 YIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ..||+|+||+||||+  .+|+.||+|.
T Consensus        19 ~~LG~G~fg~Vy~~~~~~~g~~vAvKv   45 (362)
T d1q8ya_          19 RKLGWGHFSTVWLAKDMVNNTHVAMKI   45 (362)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEE
Confidence            479999999999998  7999999986

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=92.15  E-value=0.041  Score=46.36  Aligned_cols=77  Identities=18%  Similarity=0.250  Sum_probs=48.2

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--C---eeccCC-Ccccccc-cceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--G---VPIQNE-SMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g---~~l~~~-s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.++|.|.........+.|+..  +   +.+... .....+. ..+...   .......|.|.++..+|.+
T Consensus         7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~---~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1op3k1           7 PSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGS---GSGTEFTLTISGLQFDDFA   83 (106)
T ss_dssp             CSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEEESCCGGGCS
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeee---ccCCEEEEEEccccccCCC
Confidence            3456788999999999887666667899872  2   122111 1111111 111111   1223457999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      .|.|.+.
T Consensus        84 ~YyCa~~   90 (106)
T d1op3k1          84 TYHCQHY   90 (106)
T ss_dssp             EEEEEEE
T ss_pred             cEeeeeC
Confidence            9999764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.11  E-value=0.043  Score=46.18  Aligned_cols=75  Identities=20%  Similarity=0.322  Sum_probs=47.2

Q ss_pred             ceeecccccccccccccccCCCcEEEeec--C---eecc-CCCcccccc-cceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLFD--G---VPIQ-NESMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g---~~l~-~~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      .+.+..|+.++|.|.........+.|+..  +   +.+. .......+. ..+...   .......|.|.++..+|.+.|
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~---~~~~~~~L~I~~~~~~Dsa~Y   85 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGS---GSGTDFTLTIDPVEADDTAIY   85 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGGCEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeee---cCCCEEEeEECCcChhhCCCc
Confidence            46788999999999987766678999872  2   1111 111111111 111111   112346899999999999999


Q ss_pred             eEeec
Q psy12044        336 VCVAE  340 (767)
Q Consensus       336 ~CvA~  340 (767)
                      .|.+.
T Consensus        86 yCa~~   90 (106)
T d1lk3l1          86 FCQQS   90 (106)
T ss_dssp             EEEEC
T ss_pred             ccccc
Confidence            99754

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.016  Score=57.30  Aligned_cols=48  Identities=15%  Similarity=0.160  Sum_probs=34.1

Q ss_pred             CCccccCCCCcceEEeeCCceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        448 GYIIADGHNDMMLYATDSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       448 ~nlIG~GgfG~VYKG~~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      ...||+|+||.||||...|+.||+|....  ...       -.+|.+|++...+.+-
T Consensus        12 ~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~--~~~-------~~~~~~E~~~l~~l~H   59 (262)
T d1byga_          12 LQTIGKGEFGDVMLGDYRGNKVAVKCIKN--DAT-------AQAFLAEASVMTQLRH   59 (262)
T ss_dssp             EEEEEECSSCEEEEEEETTEEEEEEECCC--CC---------HHHHHTHHHHTTCCC
T ss_pred             eEEEecCCCeEEEEEEECCeEEEEEEECc--HHH-------HHHHHHHHHHHHhCCC
Confidence            34799999999999996688999987321  111       1236688888877654

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=92.09  E-value=0.076  Score=45.05  Aligned_cols=81  Identities=21%  Similarity=0.409  Sum_probs=48.3

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--Ceec----cCCCcccccccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPI----QNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l----~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      +..+.+.+|+.++|.|.... ....+.|++.  +...    ........... ..............|.|.++..+|.|.
T Consensus         8 P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGR-LKSAFDSERARYSTLHIRDAQLEDSGT   85 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETT-EEEECCSSSSSEEEEEECSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccc-cceEEeecCCceeEEEECCCCHhHCEE
Confidence            44567889999999998764 3457899872  2211    10110000011 111111122345679999999999999


Q ss_pred             eeEeeccCC
Q psy12044        335 FVCVAENQA  343 (767)
Q Consensus       335 Y~CvA~N~~  343 (767)
                      |.|.+....
T Consensus        86 YyCa~~~~~   94 (113)
T d1h5ba_          86 YFCAAEASS   94 (113)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEecCCC
Confidence            999876543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.017  Score=59.58  Aligned_cols=30  Identities=17%  Similarity=0.031  Sum_probs=24.0

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      .|.--..||+|+||+||+|.  .+|+.||+|.
T Consensus        18 ~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~   49 (355)
T d2b1pa1          18 RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKK   49 (355)
T ss_dssp             TEEEEEECSCC--CEEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEEeecCcCeEEEEEEECCCCCEEEEEE
Confidence            44455689999999999999  7899999988

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.95  E-value=0.024  Score=57.34  Aligned_cols=53  Identities=13%  Similarity=0.129  Sum_probs=32.3

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      |.-..+||+|+||+||+|.  .+|+.||+|....-   .   ..+....+.+|++...+..
T Consensus        11 Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~---~---~~~~~~~~~~Ei~il~~l~   65 (307)
T d1a06a_          11 YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKK---A---LEGKEGSMENEIAVLHKIK   65 (307)
T ss_dssp             EEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------------CHHHHHHHTCC
T ss_pred             eEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchH---H---hhhHHHHHHHHHHHHHhCC
Confidence            3334589999999999999  78999999872211   0   1112234667777666543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.14  Score=43.59  Aligned_cols=79  Identities=22%  Similarity=0.290  Sum_probs=46.1

Q ss_pred             cceeeccccccccccccccc-------CCCcEEEeecCeec-------cCCC--ccccc-ccceeecccCcceeeeEEEE
Q psy12044        262 FYLEIQEGKNVSLLCKVSAI-------PEAKITWLFDGVPI-------QNES--MSASE-SHAVYSTEEGTEIKKSELLI  324 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~-------P~p~itW~~~g~~l-------~~~s--~~~~~-~~~~~~~~~g~~~~~s~L~I  324 (767)
                      ..+++.+|..+.|.|.....       ....+.|......-       ....  ..... ..++.+. ........+|.|
T Consensus         9 ~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~~~~~~~sL~I   87 (121)
T d2g5ra1           9 SSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLL-GDPQTKNCTLSI   87 (121)
T ss_dssp             SEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEEC-SCGGGTBCCEEE
T ss_pred             CEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEe-eeCcCCEEEEEE
Confidence            35678899999999986421       12356787632111       0000  00011 1112222 223344678999


Q ss_pred             eeeccCCCCceeEeecc
Q psy12044        325 YNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       325 ~nvs~sD~GtY~CvA~N  341 (767)
                      .++..+|+|.|.|....
T Consensus        88 ~~v~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEK  104 (121)
T ss_dssp             CSCCGGGCEEEEEEEEE
T ss_pred             CCCChHHCEEEEEEEEe
Confidence            99999999999998853

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.03  Score=55.99  Aligned_cols=48  Identities=10%  Similarity=0.090  Sum_probs=30.1

Q ss_pred             ccccCCCCcceEEe----eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        450 IIADGHNDMMLYAT----DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       450 lIG~GgfG~VYKG~----~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      .||+|+||.||||+    .++..||++.......+      +.-.+|.+|++...+.+
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~------~~~~~~~~E~~il~~l~   67 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEK------ADTEEMMREAQIMHQLD   67 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCH------HHHHHHHHHHHHHHHCC
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCH------HHHHHHHHHHHHHHhCC
Confidence            39999999999996    35668999873221111      11124667776666554

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.84  E-value=0.053  Score=46.71  Aligned_cols=77  Identities=18%  Similarity=0.217  Sum_probs=47.7

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--C---eeccCC-Ccccccc-cceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--G---VPIQNE-SMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g---~~l~~~-s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.++|.|.........+.|+..  +   ..+... ....... ..+...   .......|.|.++..+|.+
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~---~~~~~~~L~I~~~~~~Dsa   84 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGS---GSGTDYTLTISSLQPEDVA   84 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EEBTEEEEEECSCCGGGCS
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeeccc---CCCCEEEEEcccCccCCCe
Confidence            3456778899999999887766667899872  2   122111 1111111 111111   1122457999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      .|.|.+.
T Consensus        85 vYyCa~~   91 (119)
T d1f3rb2          85 TYFCYQY   91 (119)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecc
Confidence            9999764

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=91.84  E-value=0.027  Score=57.23  Aligned_cols=27  Identities=11%  Similarity=-0.042  Sum_probs=24.1

Q ss_pred             CCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        447 GGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       447 ~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      --..||+|+||+||+|+  .+|+.||+|.
T Consensus        39 i~~~LG~G~fg~V~~a~~~~~~~~vAiK~   67 (328)
T d3bqca1          39 LVRKLGRGKYSEVFEAINITNNEKVVVKI   67 (328)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEEEE
Confidence            33579999999999999  8899999987

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=91.79  E-value=0.091  Score=44.76  Aligned_cols=83  Identities=18%  Similarity=0.257  Sum_probs=48.6

Q ss_pred             Cccceeeccccccccccccccc-CCCcEEEee--cCee---cc-C-CCccc--ccc-cceeecccCcceeeeEEEEeeec
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAI-PEAKITWLF--DGVP---IQ-N-ESMSA--SES-HAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~--~g~~---l~-~-~s~~~--~~~-~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      .+..+.+.+|+.++|.|..... ....+.|++  .++.   +. . .....  ... .++... .........|.|.++.
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~-~~~~~~~~~L~I~~~~   84 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVK-HILTQKAFHLVISPVR   84 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEE-EEGGGTEEEEEESSCC
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEE-ecCceeEEeeeecCcc
Confidence            3445678899999999987543 466889976  2221   11 0 00000  000 011111 1112234579999999


Q ss_pred             cCCCCceeEeeccCC
Q psy12044        329 IDDNGTFVCVAENQA  343 (767)
Q Consensus       329 ~sD~GtY~CvA~N~~  343 (767)
                      .+|.|.|.|......
T Consensus        85 ~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          85 TEDSATYYCAFTLPP   99 (116)
T ss_dssp             GGGCEEEEEEEECTT
T ss_pred             ccccccceeeEecCC
Confidence            999999999876543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.78  E-value=0.11  Score=42.69  Aligned_cols=67  Identities=16%  Similarity=0.292  Sum_probs=43.2

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      .+..|.+++|.|... .....+.|.+++.........           .........+.|.++...|.|.|.|...+..
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~-----------~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1          14 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPK-----------PPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCS-----------SCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEc-----------cCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            466899999999764 334566777766432111100           0011223578999999999999999876543

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.69  E-value=0.023  Score=57.68  Aligned_cols=30  Identities=13%  Similarity=0.116  Sum_probs=21.8

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCc----eEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGI----LVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~----~VA~~~  473 (767)
                      .|....+||+|+||+||||.  .+|+    .||++.
T Consensus        10 dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~   45 (317)
T d1xkka_          10 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKE   45 (317)
T ss_dssp             TEEEEEEEEECSSEEEEEEEECC----CCEEEEEEE
T ss_pred             HCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEE
Confidence            46666799999999999998  6776    467665

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=91.67  E-value=0.016  Score=59.95  Aligned_cols=30  Identities=13%  Similarity=0.018  Sum_probs=25.2

Q ss_pred             CCCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      +|.-...||+|+||.||+|.  .+|..||+|.
T Consensus        27 ~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~   58 (350)
T d1koaa2          27 HYDIHEELGTGAFGVVHRVTERATGNNFAAKF   58 (350)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEEEecCcCeEEEEEEECCCCCEEEEEE
Confidence            34334579999999999998  7899999987

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.027  Score=55.97  Aligned_cols=48  Identities=10%  Similarity=0.054  Sum_probs=30.1

Q ss_pred             CccccCCCCcceEEe-e---CCceEEEeccc--cCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        449 YIIADGHNDMMLYAT-D---SGILVATNNMN--TYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       449 nlIG~GgfG~VYKG~-~---dG~~VA~~~~~--~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      ..||+|+||+||||+ .   .++.||+|...  ...+..       -.+|++|++...+.+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~-------~~~~~~E~~il~~l~   66 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPAL-------KDELLAEANVMQQLD   66 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHH-------HHHHHHHHHHHHTCC
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHH-------HHHHHHHHHHHHhCC
Confidence            379999999999997 3   35689988721  111111       113667777666554

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.062  Score=53.23  Aligned_cols=54  Identities=19%  Similarity=0.220  Sum_probs=33.7

Q ss_pred             CCCCCCCccccCCCCcceEEeeCCceEEEeccccC--CCcchhhhhhhCCCCcccchhhccccc
Q psy12044        443 DKVNGGYIIADGHNDMMLYATDSGILVATNNMNTY--PSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~~dG~~VA~~~~~~~--~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      ++|.-...||+|+||+||||+..+ .||++.....  ++...+       +|.+|++...+.+-
T Consensus         8 ~~~~~~~~lG~G~fg~Vy~~~~~~-~vAvK~~~~~~~~~~~~~-------~~~~E~~~l~~l~H   63 (276)
T d1uwha_           8 GQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQ-------AFKNEVGVLRKTRH   63 (276)
T ss_dssp             TCCCCCSEEEECSSCEEEEEESSS-EEEEEECCCSSCCTTHHH-------HHHHHHHHHTTCCC
T ss_pred             ccEEEEEEEeeCCCcEEEEEEECC-EEEEEEEEcccCCHHHHH-------HHHHHHHHHHhCCC
Confidence            345556689999999999999333 3898874322  222222       34566666665543

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.032  Score=56.73  Aligned_cols=25  Identities=8%  Similarity=-0.049  Sum_probs=22.9

Q ss_pred             CccccCCCCcceEEe--eCCceEEEec
Q psy12044        449 YIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      ..||+|+||+||+|.  .+|+.||++.
T Consensus        11 ~~lG~G~fg~Vy~~~~~~~~~~~AiK~   37 (321)
T d1tkia_          11 EDLGRGEFGIVHRCVETSSKKTYMAKF   37 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEE
Confidence            479999999999999  7899999986

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=91.35  E-value=0.03  Score=57.83  Aligned_cols=29  Identities=7%  Similarity=-0.008  Sum_probs=24.9

Q ss_pred             CCCCCccccCCCCcceEEe--eCCceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT--DSGILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~--~dG~~VA~~~  473 (767)
                      |.-...||+|+||+||+|.  .+|+.||+|.
T Consensus        31 Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~   61 (352)
T d1koba_          31 YDILEELGSGAFGVVHRCVEKATGRVFVAKF   61 (352)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCCEEEEEE
Confidence            3344589999999999999  7899999987

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.35  E-value=0.18  Score=41.91  Aligned_cols=80  Identities=16%  Similarity=0.198  Sum_probs=45.4

Q ss_pred             cceeeccccccccccccccc---C---CCcEEEeecCe----ec-cCCC---cccccccceeecccCcceeeeEEEEeee
Q psy12044        262 FYLEIQEGKNVSLLCKVSAI---P---EAKITWLFDGV----PI-QNES---MSASESHAVYSTEEGTEIKKSELLIYNS  327 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~---P---~p~itW~~~g~----~l-~~~s---~~~~~~~~~~~~~~g~~~~~s~L~I~nv  327 (767)
                      ..+.+.+|..+.|.|.....   +   ...+.|.....    .+ ....   .......++.+. .........|.|.++
T Consensus         8 ~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELM-GNMDHKVCNLLLKDL   86 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEEC-SCGGGTBCCEEECSC
T ss_pred             CEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEE-EeCcCCEEEEEECCC
Confidence            35678899999999986421   1   22345555221    11 1110   000111112222 122334567999999


Q ss_pred             ccCCCCceeEeeccC
Q psy12044        328 NIDDNGTFVCVAENQ  342 (767)
Q Consensus       328 s~sD~GtY~CvA~N~  342 (767)
                      ...|+|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          87 KPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             ChhHCEEEEEEEEeC
Confidence            999999999988654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=91.33  E-value=0.1  Score=43.98  Aligned_cols=78  Identities=17%  Similarity=0.318  Sum_probs=46.2

Q ss_pred             ceeeccccccccccccccc-CCCcEEEee--cCee---ccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        263 YLEIQEGKNVSLLCKVSAI-PEAKITWLF--DGVP---IQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~-P~p~itW~~--~g~~---l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      .+.+.+|+.++|.|..... ....+.|+.  .+..   +..............+.. ........|.|.++..+|.|.|.
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~Dsa~Yy   85 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLII-TEDRKSSTLILPHATLRDTAVYY   85 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEE-CTTCSEEEEEESSCCGGGCEEEE
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeee-cccCCeeeehhcccccCCceEEE
Confidence            4678899999999987653 345688987  2221   111000000011111111 11234578999999999999999


Q ss_pred             Eeecc
Q psy12044        337 CVAEN  341 (767)
Q Consensus       337 CvA~N  341 (767)
                      |.+..
T Consensus        86 Ca~~~   90 (110)
T d2esvd1          86 CIVVR   90 (110)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            98753

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=91.20  E-value=0.049  Score=46.15  Aligned_cols=77  Identities=17%  Similarity=0.248  Sum_probs=48.3

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCe---ec-cCCCcccccc-cceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGV---PI-QNESMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~---~l-~~~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.........+.|+.  .+.   .+ .......... ..+...   .......|.|.++..+|.|
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~---~~~~~~~L~I~~~~~~DSa   84 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGS---GSGTQFSLKINSLLPEDFG   84 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEe---ccCCEEEEEEccccccCCe
Confidence            445677889999999988766666799988  222   11 1111111111 111111   1223567999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      .|.|.+.
T Consensus        85 ~YyCA~~   91 (109)
T d1mqkl_          85 SYYCQHH   91 (109)
T ss_dssp             EEEEEEC
T ss_pred             eEEEeee
Confidence            9999865

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=91.17  E-value=0.062  Score=45.69  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             ccceeeccccccccccccccc-CCCcEEEeec-----Ceec---cC---CCc--ccccc-cceeecccCcceeeeEEEEe
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI-PEAKITWLFD-----GVPI---QN---ESM--SASES-HAVYSTEEGTEIKKSELLIY  325 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~-----g~~l---~~---~s~--~~~~~-~~~~~~~~g~~~~~s~L~I~  325 (767)
                      +..+.+.+|+.++|.|...+. ....+.|++.     ++.+   ..   ...  ..... ...+............|.|.
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   84 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM   84 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence            345678899999999998764 4556889862     2211   00   000  00000 00111111122335679999


Q ss_pred             eeccCCCCceeEeec
Q psy12044        326 NSNIDDNGTFVCVAE  340 (767)
Q Consensus       326 nvs~sD~GtY~CvA~  340 (767)
                      ++..+|.|.|.|.+.
T Consensus        85 ~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          85 NVKPEDSDFYFCATV   99 (115)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCCCcEEEEeEc
Confidence            999999999999864

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.12  Score=43.38  Aligned_cols=76  Identities=21%  Similarity=0.362  Sum_probs=46.8

Q ss_pred             eecccccccccccccc-cCCC--cEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCC-ceeEeec
Q psy12044        265 EIQEGKNVSLLCKVSA-IPEA--KITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG-TFVCVAE  340 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g-~P~p--~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G-tY~CvA~  340 (767)
                      .+..|+.+.|.|.+.+ .|.+  .++|+.++..+........      ....+.....++|.+. ....|.| .|+|.|.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~------~~~~~~~~~~s~l~~~-~~~~D~g~~ltC~a~   84 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED------ADRKSLETKSLEVTFT-PVIEDIGKVLVCRAK   84 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSC------CSSCCCEEEEEEEEEC-CCGGGTTCEEEEEEE
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccc------cccCCcceeeEEEEcc-CChHHCCcEEEEEEE
Confidence            3568999999999876 5544  5889988776643322110      0111222334455554 4455655 6999999


Q ss_pred             cCCCCcc
Q psy12044        341 NQAGSTS  347 (767)
Q Consensus       341 N~~G~s~  347 (767)
                      +..+...
T Consensus        85 ~~~~~~~   91 (109)
T d1vcaa1          85 LHIDEMD   91 (109)
T ss_dssp             ECSCCCT
T ss_pred             cCcCCcc
Confidence            8876544

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=91.09  E-value=0.078  Score=44.58  Aligned_cols=78  Identities=18%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             Cccceeeccccccccccccccc-CCCcEEEeec--Ce---eccCC-Cccccc-ccceeecccCcceeeeEEEEeeeccCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAI-PEAKITWLFD--GV---PIQNE-SMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~~--g~---~l~~~-s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      .+..+.+..|+.++|.|..... ....+.|+..  +.   .+... ...... ...+...   .......|.|.++..+|
T Consensus         7 ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~---~~~~~~~L~I~~~~~~D   83 (108)
T d2fx7l1           7 SPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGS---GSGTDFTLTISRLEPED   83 (108)
T ss_dssp             SSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE---EETTEEEEEESSCCGGG
T ss_pred             eCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeee---cCCCEEEEEehHheecc
Confidence            3455678899999999986544 3456889872  22   22111 111011 1111111   11234679999999999


Q ss_pred             CCceeEeec
Q psy12044        332 NGTFVCVAE  340 (767)
Q Consensus       332 ~GtY~CvA~  340 (767)
                      .|.|.|.+.
T Consensus        84 sa~YyCa~~   92 (108)
T d2fx7l1          84 FAVYYCQQY   92 (108)
T ss_dssp             CSEEEEEEC
T ss_pred             cEEEeeecC
Confidence            999999864

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.03  E-value=0.072  Score=45.30  Aligned_cols=77  Identities=17%  Similarity=0.239  Sum_probs=45.7

Q ss_pred             ccceeecccccccccccccccC-CCcEEEeecC--eecc------C-CC-c-ccccc--cceeecccCcceeeeEEEEee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP-EAKITWLFDG--VPIQ------N-ES-M-SASES--HAVYSTEEGTEIKKSELLIYN  326 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P-~p~itW~~~g--~~l~------~-~s-~-~~~~~--~~~~~~~~g~~~~~s~L~I~n  326 (767)
                      +...++..|+.++|.|...... ...+.|++..  ....      . .. . .....  ..+....   ......|.|.+
T Consensus         7 P~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~---~~~~~~L~I~~   83 (114)
T d1akjd_           7 PLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR---LGDTFVLTLSD   83 (114)
T ss_dssp             CCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE---ETTEEEEEESS
T ss_pred             CCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC---CCCChhcEEcc
Confidence            4456778899999999876543 4568898722  1110      0 00 0 00000  0111111   11245799999


Q ss_pred             eccCCCCceeEeec
Q psy12044        327 SNIDDNGTFVCVAE  340 (767)
Q Consensus       327 vs~sD~GtY~CvA~  340 (767)
                      +..+|.|.|.|.+.
T Consensus        84 l~~~Dsg~YyCa~~   97 (114)
T d1akjd_          84 FRRENEGYYFCSAL   97 (114)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCCCCCEEEeEeEc
Confidence            99999999999875

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.11  Score=43.25  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=20.7

Q ss_pred             eeEEEEeeeccCCCCceeEeeccC
Q psy12044        319 KSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       319 ~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ...|.|.+++.+|.|+|.|.+...
T Consensus        68 ~~sL~I~~v~~~D~G~Y~C~V~~~   91 (110)
T d1ncna_          68 SWTLRLHNLQIKDKGLYQCIIHHK   91 (110)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEEE
T ss_pred             eEEEEECCCChhHCEEEEEEEEec
Confidence            357999999999999999998643

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=90.95  E-value=0.12  Score=43.55  Aligned_cols=75  Identities=16%  Similarity=0.272  Sum_probs=46.0

Q ss_pred             ceeeccccccccccccccc--CCCcEEEeec--Ce---eccCCC-ccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        263 YLEIQEGKNVSLLCKVSAI--PEAKITWLFD--GV---PIQNES-MSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~--P~p~itW~~~--g~---~l~~~s-~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      .+.+..|+.++|.|...+.  ....+.|+..  +.   .+.... ..... ..++....   ......|.|.++..+|.+
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK---SGTSATLGITGLQTGDEA   85 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE---ETTEEEEEESSCCGGGCS
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC---CCCEeeeEEeeeccccCc
Confidence            5778899999999987654  3456899872  21   111111 11111 11111111   123468999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      .|.|.+.
T Consensus        86 ~YyCA~~   92 (111)
T d1rzfl1          86 DYYCGTW   92 (111)
T ss_dssp             EEEEEEE
T ss_pred             ceEEeec
Confidence            9999865

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=90.93  E-value=0.11  Score=43.98  Aligned_cols=84  Identities=12%  Similarity=0.114  Sum_probs=48.4

Q ss_pred             Cccceeeccccccccccccccc-CCCcEEEee--cCee---cc---CCCcccccccceeecccCcceeeeEEEEeeeccC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAI-PEAKITWLF--DGVP---IQ---NESMSASESHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~-P~p~itW~~--~g~~---l~---~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      .+..+.+.+|+.++|.|..... ....+.|+.  .+..   +.   .............+.... ......|.|.++..+
T Consensus         6 ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~   84 (114)
T d2ak4d1           6 AQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQK-STSSFNFTITASQVV   84 (114)
T ss_dssp             CCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEET-TTTEEEEEESSCCGG
T ss_pred             cCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcC-CCCEEEEeecccccc
Confidence            3445678899999999975443 345678987  2221   11   000000001111111111 123568999999999


Q ss_pred             CCCceeEeeccCCC
Q psy12044        331 DNGTFVCVAENQAG  344 (767)
Q Consensus       331 D~GtY~CvA~N~~G  344 (767)
                      |.|.|.|.+....+
T Consensus        85 Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          85 DSAVYFCALSGFYN   98 (114)
T ss_dssp             GCEEEEEEEECSBT
T ss_pred             cCCCceEeCCCCCC
Confidence            99999998765433

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.022  Score=58.05  Aligned_cols=59  Identities=12%  Similarity=0.198  Sum_probs=35.6

Q ss_pred             CCCCCCCccccCCCCcceEEe-----eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT-----DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~-----~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      ++|.--..||+|+||+||||.     .+|+.||+|...-   ..+..-.+.--.+.+|++...+.+.
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~---~~~~~~~~~~~~~~~E~~il~~l~h   87 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKK---ATIVQKAKTTEHTRTERQVLEHIRQ   87 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESE---EEEEEEESSGGGCCCHHHHHHHHHT
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEeh---HHhccchHHHHHHHHHHHHHHhccC
Confidence            455555689999999999996     3589999876110   0000000001136677777776654

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=90.91  E-value=0.11  Score=44.15  Aligned_cols=78  Identities=17%  Similarity=0.240  Sum_probs=46.6

Q ss_pred             ccceeeccccccccccccccc--CCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI--PEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~--P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +..+...+|+.++|.|...+.  ....+.|+..  +.....  ......+ +.... ........|.|.++..+|.|.|.
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~--~~~~~~~-~~~~~-~~~~~~~~L~I~~l~~~Dsa~Yy   82 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQ--SISIGGR-YVETV-NKGSKSFSLRISDLRVEDSGTYK   82 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE--ECCCBTT-EEEEE-ETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceeeeecccccee--eeeeccc-cccee-ECCCCceeeeecccccCCcceEe
Confidence            445677899999999987643  3456889862  221110  0000111 11110 11123457999999999999999


Q ss_pred             EeeccC
Q psy12044        337 CVAENQ  342 (767)
Q Consensus       337 CvA~N~  342 (767)
                      |.+...
T Consensus        83 Ca~~~~   88 (113)
T d1vesa_          83 CQAFYS   88 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeecc
Confidence            988543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=90.83  E-value=0.1  Score=44.38  Aligned_cols=79  Identities=23%  Similarity=0.397  Sum_probs=48.0

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCeec---cC-CCcc-cccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPI---QN-ESMS-ASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l---~~-~s~~-~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.++|.|...+. ...+.|+.  .+...   .. .... ......+.+. .........|.|.++..+|.|
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~~~~~Dsa   84 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQ-FGDARKDSSLHITAAQPGDTG   84 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEE-ECTTSSEEEEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccc-cccccceeeeeecCCCcccee
Confidence            345678899999999987654 45788987  22211   10 0000 0001111111 122345678999999999999


Q ss_pred             ceeEeecc
Q psy12044        334 TFVCVAEN  341 (767)
Q Consensus       334 tY~CvA~N  341 (767)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (115)
T d1ogad1          85 LYLCAGAG   92 (115)
T ss_dssp             EEEEEEEC
T ss_pred             eEcccccC
Confidence            99998753

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.73  E-value=0.057  Score=45.58  Aligned_cols=78  Identities=15%  Similarity=0.178  Sum_probs=48.5

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--C---eeccC-CCcccccc-cceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--G---VPIQN-ESMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g---~~l~~-~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|...+.....+.|+..  +   +.+.. ......+. ..+....   ......|.|.++..+|.+
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~---~~~~~~L~I~~l~~~Dsa   86 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG---SGTDYTFTISSLQPEDIA   86 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC---CCCEeEEEEeeceeCcCc
Confidence            4456788999999999987766677889872  2   12211 11111111 1111111   123457999999999999


Q ss_pred             ceeEeecc
Q psy12044        334 TFVCVAEN  341 (767)
Q Consensus       334 tY~CvA~N  341 (767)
                      .|.|.+..
T Consensus        87 ~YyCA~~~   94 (109)
T d1bwwa_          87 TYYCQQYQ   94 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeecC
Confidence            99998653

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=90.68  E-value=0.087  Score=44.55  Aligned_cols=76  Identities=14%  Similarity=0.282  Sum_probs=47.8

Q ss_pred             ceeecccccccccccccccCCCcEEEee--cCee---c-cCCCccccccc-ceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVP---I-QNESMSASESH-AVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~---l-~~~s~~~~~~~-~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      .+.+.+|+.++|.|.........+.|+.  .+..   + ........... .+...   .......|.|.++..+|.+.|
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~l~~~DsavY   85 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGS---NSGNMATLTISRVEAGDEADY   85 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE---EETTEEEEEESSCCGGGCEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeee---cCCCccceEEeeeccCCCEEE
Confidence            4677899999999997766666799987  2221   1 11111111111 11111   123356899999999999999


Q ss_pred             eEeecc
Q psy12044        336 VCVAEN  341 (767)
Q Consensus       336 ~CvA~N  341 (767)
                      .|.+..
T Consensus        86 yCA~~~   91 (109)
T d1w72l1          86 YCQVWD   91 (109)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            998753

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.038  Score=55.90  Aligned_cols=49  Identities=16%  Similarity=0.172  Sum_probs=30.1

Q ss_pred             CccccCCCCcceEEe-e--CC--ceEEEeccccC-CCcchhhhhhhCCCCcccchhhccccc
Q psy12044        449 YIIADGHNDMMLYAT-D--SG--ILVATNNMNTY-PSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       449 nlIG~GgfG~VYKG~-~--dG--~~VA~~~~~~~-~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      .+||+|+||+||||+ .  +|  ..||++..... +...       -.+|.+|++...+.+-
T Consensus        33 ~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~-------~~~~~~E~~~l~~l~H   87 (311)
T d1r0pa_          33 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE-------VSQFLTEGIIMKDFSH   87 (311)
T ss_dssp             EEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHH-------HHHHHHHHHHHHTCCC
T ss_pred             eEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHH-------HHHHHHHHHHHHhCCC
Confidence            479999999999998 3  23  36888773221 1111       1336677776665543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=90.65  E-value=0.21  Score=42.13  Aligned_cols=82  Identities=13%  Similarity=0.225  Sum_probs=47.9

Q ss_pred             Cccceeecccccccccccccc-cCCCcEEEeec--Ceec----cCCCcc-ccc-ccceeecccCcceeeeEEEEeeeccC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSA-IPEAKITWLFD--GVPI----QNESMS-ASE-SHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g-~P~p~itW~~~--g~~l----~~~s~~-~~~-~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      .+..+.+.+|+.++|.|.... .....+.|+..  ++..    ...... ... ...+... .........|.|.++..+
T Consensus         5 ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~~~~~   83 (115)
T d1fo0a_           5 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLN-FQKPKSSIGLIITATQIE   83 (115)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEE-EEGGGTEEEEEECSCCGG
T ss_pred             cCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEE-EeccCCEEEEEECCCCcc
Confidence            344577889999999997643 34456889872  2211    100000 000 0111111 111233567999999999


Q ss_pred             CCCceeEeeccC
Q psy12044        331 DNGTFVCVAENQ  342 (767)
Q Consensus       331 D~GtY~CvA~N~  342 (767)
                      |.|.|.|.....
T Consensus        84 Dsa~YyCa~~~~   95 (115)
T d1fo0a_          84 DSAVYFCAMRGD   95 (115)
T ss_dssp             GCEEEEEEEECC
T ss_pred             ccccccceeecC
Confidence            999999987544

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=90.59  E-value=0.14  Score=43.16  Aligned_cols=77  Identities=18%  Similarity=0.300  Sum_probs=46.6

Q ss_pred             ceeecccccccccccccccC-CCcEEEeec--Ceec---cC-CCcccc-cccceeecccCcceeeeEEEEeeeccCCCCc
Q psy12044        263 YLEIQEGKNVSLLCKVSAIP-EAKITWLFD--GVPI---QN-ESMSAS-ESHAVYSTEEGTEIKKSELLIYNSNIDDNGT  334 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P-~p~itW~~~--g~~l---~~-~s~~~~-~~~~~~~~~~g~~~~~s~L~I~nvs~sD~Gt  334 (767)
                      .+.+.+|+.++|.|...+.. ...+.|++.  +..+   .. ...... ....+...   .......|.|.++..+|.|.
T Consensus         7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIA---EDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             EEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEEC---TTSSEEEEEESSCCGGGCEE
T ss_pred             EEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeec---ccCCeeEEEEeeccccccee
Confidence            46778999999999876544 456899882  3211   11 110000 11111111   12335679999999999999


Q ss_pred             eeEeeccC
Q psy12044        335 FVCVAENQ  342 (767)
Q Consensus       335 Y~CvA~N~  342 (767)
                      |.|.+...
T Consensus        84 YyCa~~~~   91 (112)
T d1kgcd1          84 YYCILPLA   91 (112)
T ss_dssp             EEEECCCC
T ss_pred             EeeeEecC
Confidence            99987543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=90.51  E-value=0.08  Score=44.68  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=47.2

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCee---ccC-CCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVP---IQN-ESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~---l~~-~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.........+.|+.  .+..   +.. ....... ...+... .........|.|.++..+|.+
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~-~~~~~~~~~L~i~~~~~~Dsa   85 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEAT-YNKEATSFHLQKASVQESDSA   85 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEE-CBTTTTBCCEEEEEECGGGCE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeee-ecCCCCEEeeeecCcCcCCCc
Confidence            445678899999999987665556788987  2321   110 0000000 0011111 111223567999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      .|.|.+.
T Consensus        86 ~YyCA~~   92 (110)
T d1ac6a_          86 VYYCALS   92 (110)
T ss_dssp             EEEEEEE
T ss_pred             ccceeec
Confidence            9999875

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=90.40  E-value=0.14  Score=43.27  Aligned_cols=77  Identities=12%  Similarity=0.200  Sum_probs=46.7

Q ss_pred             cceeecccccccccccccccC---CCcEEEeec--Ceec---cC-CCccccccc-ceeecccCcceeeeEEEEeeeccCC
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIP---EAKITWLFD--GVPI---QN-ESMSASESH-AVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P---~p~itW~~~--g~~l---~~-~s~~~~~~~-~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      ..+.+..|+.++|.|...+..   ...+.|+..  +...   .. ......... .+...   .......|.|.++..+|
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~l~~~D   84 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGS---KSGNSASLTISGLQAED   84 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE---EETTEEEEEECSCCGGG
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEE---CCCCEeeEEeCcCcccc
Confidence            356788999999999876543   345889872  2211   11 111111111 11111   11235689999999999


Q ss_pred             CCceeEeecc
Q psy12044        332 NGTFVCVAEN  341 (767)
Q Consensus       332 ~GtY~CvA~N  341 (767)
                      .+.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (112)
T d1lgva1          85 EADYYCSSYD   94 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEeeec
Confidence            9999998754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=90.34  E-value=0.065  Score=45.12  Aligned_cols=78  Identities=15%  Similarity=0.282  Sum_probs=48.1

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--Cee---cc-CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVP---IQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~---l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+.+|+.++|.|.........+.|+..  +..   +. .......+ ...+....   ......|.|.++..+|.+
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~---~~~~~~L~I~~~~~~Dsa   84 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG---SGQDYSLTISSLEYEDMG   84 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc---cCCEEEccccccCCcCCE
Confidence            3456778999999999887766677889872  221   11 11111011 11111111   123468999999999999


Q ss_pred             ceeEeecc
Q psy12044        334 TFVCVAEN  341 (767)
Q Consensus       334 tY~CvA~N  341 (767)
                      .|.|....
T Consensus        85 ~YyCa~~~   92 (107)
T d1d5il1          85 IYYCLQYD   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEeeecc
Confidence            99997643

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.03  Score=56.52  Aligned_cols=55  Identities=22%  Similarity=0.317  Sum_probs=34.9

Q ss_pred             CCCCCCCccccCCCCcceEEe--eCCc--eEEEeccccCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        443 DKVNGGYIIADGHNDMMLYAT--DSGI--LVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       443 nnFs~~nlIG~GgfG~VYKG~--~dG~--~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      ++|.-..+||+|+||+||||+  .+|.  .||++.......      .+..-++++|++...+..
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~E~~~l~~l~   68 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS------KDDHRDFAGELEVLCKLG   68 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------------CHHHHHHHHHTTCC
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccC------hHHHHHHHHHHHHHHhcc
Confidence            355555689999999999999  6666  466665321111      123346788888888753

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=90.13  E-value=0.14  Score=43.44  Aligned_cols=79  Identities=15%  Similarity=0.248  Sum_probs=47.2

Q ss_pred             ccceeecccccccccccccc--cCCCcEEEeec--CeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCcee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSA--IPEAKITWLFD--GVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFV  336 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g--~P~p~itW~~~--g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~  336 (767)
                      +..+....|+.++|.|...+  .....+.|+..  +....  .+.....+ +.... ........|.|.++..+|.|+|.
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~--~~~~~~gr-~~~~~-~~~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNE--ESISKGGR-YVETV-NSGSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCC--EECCCBTT-EEEEE-ETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceee--eeeccCCc-EeeEE-ecCCceeeeEecCCcCccCEEEe
Confidence            34566788999999997654  34568899872  22111  01101111 11110 01123468999999999999999


Q ss_pred             EeeccCC
Q psy12044        337 CVAENQA  343 (767)
Q Consensus       337 CvA~N~~  343 (767)
                      |.+....
T Consensus        82 CA~~~~~   88 (112)
T d1sq2n_          82 CGLGVAG   88 (112)
T ss_dssp             EEECBTT
T ss_pred             EEEecCC
Confidence            9876443

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=90.00  E-value=0.14  Score=43.91  Aligned_cols=82  Identities=15%  Similarity=0.243  Sum_probs=49.0

Q ss_pred             CccceeecccccccccccccccC--CCcEEEee--cCe---ecc-CCCcccccc-cceeecccCcceeeeEEEEeeeccC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIP--EAKITWLF--DGV---PIQ-NESMSASES-HAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P--~p~itW~~--~g~---~l~-~~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      ....+.+..|+.++|.|...+..  ...+.|+.  .++   .+. ......... ..+.... ........|.|.++..+
T Consensus         7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~-~~~~~~~~L~i~~~~~~   85 (120)
T d1hxma1           7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDI-DIAKNLAVLKILAPSER   85 (120)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEE-EGGGTEEEEEESSCCGG
T ss_pred             cCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeec-cccccceeccccccccc
Confidence            34456788999999999887543  45689987  232   111 111111111 1111111 12223578999999999


Q ss_pred             CCCceeEeeccC
Q psy12044        331 DNGTFVCVAENQ  342 (767)
Q Consensus       331 D~GtY~CvA~N~  342 (767)
                      |.|+|.|.....
T Consensus        86 Dsa~YyCA~~~~   97 (120)
T d1hxma1          86 DEGSYYCACDTL   97 (120)
T ss_dssp             GCEEEEEEEECC
T ss_pred             CCceeecCcccC
Confidence            999999986543

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.05  Score=54.83  Aligned_cols=52  Identities=15%  Similarity=0.153  Sum_probs=33.4

Q ss_pred             CCCccccCCCCcceEEe-e------CCceEEEeccccCCCcchhhhhhhCCCCcccchhhccccc
Q psy12044        447 GGYIIADGHNDMMLYAT-D------SGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDRR  504 (767)
Q Consensus       447 ~~nlIG~GgfG~VYKG~-~------dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~~  504 (767)
                      -...||+|+||.||||+ .      +++.||++...-....  +    ..-+|++|++...+..-
T Consensus        24 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~--~----~~~~~~~E~~il~~l~h   82 (308)
T d1p4oa_          24 MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASM--R----ERIEFLNEASVMKEFNC   82 (308)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCH--H----HHHHHHHHHHHGGGCCC
T ss_pred             EeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccCh--H----HHHHHHHHHHHHHHcCC
Confidence            33479999999999997 2      3678999874321111  1    11246778877776543

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.05  Score=54.36  Aligned_cols=30  Identities=20%  Similarity=0.200  Sum_probs=23.7

Q ss_pred             CCCCCCccccCCCCcceEEe--e-CCceEEEec
Q psy12044        444 KVNGGYIIADGHNDMMLYAT--D-SGILVATNN  473 (767)
Q Consensus       444 nFs~~nlIG~GgfG~VYKG~--~-dG~~VA~~~  473 (767)
                      .|.--..||+|+||+||+|.  . +|+.||+|.
T Consensus         8 ~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~   40 (305)
T d1blxa_           8 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKR   40 (305)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTTEEEEEEE
T ss_pred             CEEEEEEEecccCeEEEEEEEECCCCEEEEEEE
Confidence            34334589999999999998  3 477899887

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.052  Score=54.24  Aligned_cols=27  Identities=19%  Similarity=0.028  Sum_probs=21.8

Q ss_pred             CCCccccCCCCcceEEe-e------CCceEEEec
Q psy12044        447 GGYIIADGHNDMMLYAT-D------SGILVATNN  473 (767)
Q Consensus       447 ~~nlIG~GgfG~VYKG~-~------dG~~VA~~~  473 (767)
                      -...||+|+||+||||+ .      +|+.||+|.
T Consensus        17 ~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~   50 (299)
T d1ywna1          17 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKM   50 (299)
T ss_dssp             EEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEE
T ss_pred             EeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEE
Confidence            34589999999999997 2      346899887

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=88.81  E-value=0.2  Score=42.50  Aligned_cols=75  Identities=19%  Similarity=0.264  Sum_probs=46.0

Q ss_pred             ceeeccccccccccccccc--CCCcEEEeec--Ce---eccCC-Cccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        263 YLEIQEGKNVSLLCKVSAI--PEAKITWLFD--GV---PIQNE-SMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~--P~p~itW~~~--g~---~l~~~-s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      .+.+..|+.++|.|...+.  ....+.|+..  +.   .+... ...... ...+...   .......|.|.++..+|.+
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~v~~~DsA   85 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSAS---KSGTSASLAISGLESEDEA   85 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEE---EETTEEEEEESSCCGGGCE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceec---CCCCeeeeEecccCcccCc
Confidence            4677889999999987654  3567899872  21   11111 111011 1111111   1123568999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      .|.|...
T Consensus        86 ~YyCA~~   92 (114)
T d2rhea_          86 DYYCAAW   92 (114)
T ss_dssp             EEEEEEE
T ss_pred             eEEEeec
Confidence            9999875

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.78  E-value=0.14  Score=42.54  Aligned_cols=76  Identities=18%  Similarity=0.260  Sum_probs=44.5

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--Cee---ccCC-Cccccccc-ceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVP---IQNE-SMSASESH-AVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~---l~~~-s~~~~~~~-~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      +..+.+..|+.++|.|.... ....+.|+..  +..   +... ........ .+..   ........|.|.++..+|.+
T Consensus         7 P~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~---~~~~~~~~L~I~~~~~~Dsa   82 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSG---SGSGTSYSLTISSMETEDAA   82 (104)
T ss_dssp             SSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEE---EEETTEEEEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEE---ecCCCEEEEEecccCcccCC
Confidence            44567889999999998654 3445789873  211   1100 00000000 0111   01123467999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      .|.|.+.
T Consensus        83 ~YyCa~~   89 (104)
T d1yqvl1          83 TYYCQQW   89 (104)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9999753

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=88.36  E-value=0.39  Score=40.98  Aligned_cols=79  Identities=14%  Similarity=0.234  Sum_probs=46.4

Q ss_pred             cceeecccccccccccccccC--CCcEEEee--cCe---eccCC-Ccc----ccc-ccceeecccCcceeeeEEEEeeec
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIP--EAKITWLF--DGV---PIQNE-SMS----ASE-SHAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P--~p~itW~~--~g~---~l~~~-s~~----~~~-~~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      ..+....|+.++|.|.+.+..  ...+.|+.  .+.   .+... ...    ... ...+.. ..........|.|.++.
T Consensus         9 ~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~-s~~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1           9 ISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEA-SKNPSASTSILTIYSLE   87 (120)
T ss_dssp             SEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEE-EECCTTTEEEEEECSCC
T ss_pred             CEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccc-ccccccccccccccccc
Confidence            356667899999999876543  45688987  222   12110 000    001 111111 11122334679999999


Q ss_pred             cCCCCceeEeecc
Q psy12044        329 IDDNGTFVCVAEN  341 (767)
Q Consensus       329 ~sD~GtY~CvA~N  341 (767)
                      .+|.+.|.|....
T Consensus        88 ~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          88 EEDEAIYYCSYGE  100 (120)
T ss_dssp             GGGCSEEEEEECC
T ss_pred             cccceeEEEEEcC
Confidence            9999999997653

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.15  E-value=0.22  Score=41.83  Aligned_cols=77  Identities=16%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             ceeecccccccccccccccC--CCcEEEeec--Ceecc----CCCccccc-ccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIP--EAKITWLFD--GVPIQ----NESMSASE-SHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P--~p~itW~~~--g~~l~----~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      .+.+..|+.++|.|...+..  ...+.|+..  ++...    ........ ...+.... ........|.|.++..+|.+
T Consensus         9 s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~l~~~Dsa   87 (111)
T d1cd0a_           9 SVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSI-DRSSNSASLTISGLKTEDEA   87 (111)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTTTEEEEEECSCCGGGCE
T ss_pred             eeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEee-cCCCCccccccccCCcccCc
Confidence            56788999999999876543  345889872  22211    11111111 11111111 11223678999999999999


Q ss_pred             ceeEeec
Q psy12044        334 TFVCVAE  340 (767)
Q Consensus       334 tY~CvA~  340 (767)
                      .|.|...
T Consensus        88 ~YyCA~~   94 (111)
T d1cd0a_          88 DYYCQSY   94 (111)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9999754

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.87  E-value=0.43  Score=38.80  Aligned_cols=68  Identities=19%  Similarity=0.389  Sum_probs=44.8

Q ss_pred             ccccccccccccc-cCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCC
Q psy12044        268 EGKNVSLLCKVSA-IPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQA  343 (767)
Q Consensus       268 ~G~~vsL~C~a~g-~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~  343 (767)
                      .++.+.|.|.+.+ .|.+.+.|..++..+......     .......|.....+.|.+.   ..+...|+|.+....
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~-----~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~   83 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTT-----VSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGH   83 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEE-----EEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETT
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEeccccee-----eEecCCCccEEEEEEEEcc---CCccceEEEEEEecC
Confidence            4667889999987 588999999988766443221     0111234555556677664   345678999987654

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=87.80  E-value=0.31  Score=41.02  Aligned_cols=78  Identities=15%  Similarity=0.344  Sum_probs=46.6

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCeec---cCC----Cccccc-ccceeecccCcceeeeEEEEeeeccC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPI---QNE----SMSASE-SHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l---~~~----s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      +..+.+.+|+.++|.|... .....+.|+.  .+...   ...    ...... ...+...  ........|.|.++..+
T Consensus         6 P~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~~~~~   82 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVS--REKKESFPLTVTSAQKN   82 (114)
T ss_dssp             CSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEEC--CSSTTBCCEEECSCCSC
T ss_pred             CCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEE--cccCCeEEEEECcCCcC
Confidence            4456788999999999865 4456789987  22211   100    000000 1111111  11123457999999999


Q ss_pred             CCCceeEeecc
Q psy12044        331 DNGTFVCVAEN  341 (767)
Q Consensus       331 D~GtY~CvA~N  341 (767)
                      |.+.|.|.+..
T Consensus        83 DSa~YyCa~~~   93 (114)
T d1ogae1          83 PTAFYLCASSS   93 (114)
T ss_dssp             CCEEEEEEEES
T ss_pred             CceeEEEeecc
Confidence            99999997654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=87.77  E-value=0.16  Score=42.70  Aligned_cols=78  Identities=12%  Similarity=0.229  Sum_probs=45.9

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCee---cc-CC---CcccccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVP---IQ-NE---SMSASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~---l~-~~---s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      +..+.+..|+.++|.|.... ....+.|++  .+..   +. ..   ......... .+...........|.|.++..+|
T Consensus         8 P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~D   85 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPD-GYEASRPSQEQFSLILESATPSQ   85 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCT-TCEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCC-CEEEEeccCCEEEEEECCCCHhh
Confidence            44567789999999998654 456789988  2321   11 00   000000000 00011112234679999999999


Q ss_pred             CCceeEeec
Q psy12044        332 NGTFVCVAE  340 (767)
Q Consensus       332 ~GtY~CvA~  340 (767)
                      .|.|.|.+.
T Consensus        86 sa~YyCa~~   94 (110)
T d2aq2a1          86 TSVYFCASG   94 (110)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEeeC
Confidence            999999764

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.71  E-value=0.073  Score=53.56  Aligned_cols=48  Identities=15%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             CccccCCCCcceEEe-------eCCceEEEeccccCCCcchhhhhhhCCCCcccchhhccc
Q psy12044        449 YIIADGHNDMMLYAT-------DSGILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKD  502 (767)
Q Consensus       449 nlIG~GgfG~VYKG~-------~dG~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~  502 (767)
                      ..||+|+||.||||+       .+|+.||++....-...      +.-.+|++|++...+.
T Consensus        29 ~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~------~~~~~~~~E~~~~~~l   83 (311)
T d1t46a_          29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHL------TEREALMSELKVLSYL   83 (311)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCH------HHHHHHHHHHHHHHHH
T ss_pred             eEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCH------HHHHHHHHHHHHHHhc
Confidence            479999999999995       35678999883321111      1112456666666654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=87.66  E-value=0.14  Score=43.13  Aligned_cols=78  Identities=19%  Similarity=0.259  Sum_probs=46.0

Q ss_pred             ccceeeccccccccccccccc----CCCcEEEee--cCe---ecc-CCCccccccc-ceeecccCcceeeeEEEEeeecc
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI----PEAKITWLF--DGV---PIQ-NESMSASESH-AVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~----P~p~itW~~--~g~---~l~-~~s~~~~~~~-~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      +..+.+..|+.++|.|.....    ....+.|+.  .+.   .+. .......+.. .+...   .......|.|.++..
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~---~~~~~~~L~I~~~~~   84 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGT---GSRTDFTLIIDPVEA   84 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---CSSSEEEEEESSCCG
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEe---cCCCEEEEEEccccc
Confidence            345667889999999976432    234588987  232   121 1111111111 11111   122356899999999


Q ss_pred             CCCCceeEeecc
Q psy12044        330 DDNGTFVCVAEN  341 (767)
Q Consensus       330 sD~GtY~CvA~N  341 (767)
                      +|.+.|.|.+.+
T Consensus        85 ~Dsa~YyCa~~~   96 (111)
T d1j05a_          85 DDVATYYCQQTN   96 (111)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccCccEEEeecC
Confidence            999999997653

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.11  Score=50.97  Aligned_cols=49  Identities=14%  Similarity=0.139  Sum_probs=29.4

Q ss_pred             CccccCCCCcceEEe--eC---CceEEEeccccCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        449 YIIADGHNDMMLYAT--DS---GILVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~d---G~~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      ..||+|+||.||||+  .+   +..||++.........      .-..+.+|++...+.+
T Consensus        13 ~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~------~~~~~~~E~~~l~~l~   66 (273)
T d1mp8a_          13 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDS------VREKFLQEALTMRQFD   66 (273)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHH------HHHHHHHHHHHHHTCC
T ss_pred             EEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHH------HHHHHHHHHHHHHhCC
Confidence            479999999999998  22   3568877632221111      1123556666665543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=87.30  E-value=0.16  Score=42.93  Aligned_cols=76  Identities=21%  Similarity=0.324  Sum_probs=45.5

Q ss_pred             ccceeeccccccccccccccc-----CCCcEEEee--cCee----ccCCCcccccc-cceeecccCcceeeeEEEEeeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI-----PEAKITWLF--DGVP----IQNESMSASES-HAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~-----P~p~itW~~--~g~~----l~~~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      +..+.+.+|+.++|.|...+.     ....+.|+.  .+..    +.......... ..+...   .......|.|.++.
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~---~s~~~~~L~Is~~~   84 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGS---GSGTAFTLRISRVE   84 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---ECSSEEEEEESSCC
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEee---cCCCEEEEEECCcc
Confidence            345677889999999987653     245688987  2221    11111111111 111111   12235679999999


Q ss_pred             cCCCCceeEee
Q psy12044        329 IDDNGTFVCVA  339 (767)
Q Consensus       329 ~sD~GtY~CvA  339 (767)
                      .+|.+.|.|..
T Consensus        85 ~~DsAvYyCa~   95 (112)
T d1mjul1          85 AEDVGVYYCLQ   95 (112)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccCCceEEEEe
Confidence            99999999964

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.26  E-value=0.39  Score=39.24  Aligned_cols=63  Identities=17%  Similarity=0.296  Sum_probs=42.8

Q ss_pred             eecccccccccccccccCCCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        265 EIQEGKNVSLLCKVSAIPEAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       265 ~v~~G~~vsL~C~a~g~P~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      .+..|.+++|.|.........+.|.+++.........              ......+.+.+++..|.|+|.|....
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~--------------~~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQS--------------GEHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEE--------------CSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcC--------------CCcccEEEEeccccccCcEEEEEEEc
Confidence            5778999999998654455567788876432111100              11235688899999999999997643

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=87.17  E-value=0.36  Score=40.46  Aligned_cols=82  Identities=18%  Similarity=0.365  Sum_probs=46.9

Q ss_pred             cceeecccccccccccccccCCCcEEEeec--Ceec---c---CCCcccccccceeecccCcceeeeEEEEeeeccCCCC
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPI---Q---NESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNG  333 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l---~---~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~G  333 (767)
                      ..+.+..|+.++|.|.... ....+.|+..  +...   .   .............+...........|.|.++..+|.+
T Consensus         6 ~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   84 (112)
T d2cdeb1           6 RYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTS   84 (112)
T ss_dssp             SEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCS
T ss_pred             CEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccc
Confidence            3466788999999998643 3467889872  2211   1   0000000000001111111223467999999999999


Q ss_pred             ceeEeeccCCC
Q psy12044        334 TFVCVAENQAG  344 (767)
Q Consensus       334 tY~CvA~N~~G  344 (767)
                      .|.|.+....+
T Consensus        85 ~YyCA~~~~~~   95 (112)
T d2cdeb1          85 QYLCASSENIG   95 (112)
T ss_dssp             EEEEEEECSSS
T ss_pred             cEEEEEecCCC
Confidence            99998765443

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=86.95  E-value=0.28  Score=41.42  Aligned_cols=77  Identities=18%  Similarity=0.261  Sum_probs=45.4

Q ss_pred             ccceeeccccccccccccccc------CCCcEEEeec--Ce---eccCC-Ccccccc-cceeecccCcceeeeEEEEeee
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI------PEAKITWLFD--GV---PIQNE-SMSASES-HAVYSTEEGTEIKKSELLIYNS  327 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~------P~p~itW~~~--g~---~l~~~-s~~~~~~-~~~~~~~~g~~~~~s~L~I~nv  327 (767)
                      +..+.+..|+.++|.|...+.      ....+.|+..  +.   .+... ....... ..+...   .......|.|.++
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~---~s~~~~~L~I~~l   84 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS---GSGTDFTLTITSV   84 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE---EETTEEEEEESSC
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEe---CCCCeEeEEeccc
Confidence            445677899999999986543      2245889872  22   11111 1111111 111111   1233457999999


Q ss_pred             ccCCCCceeEeec
Q psy12044        328 NIDDNGTFVCVAE  340 (767)
Q Consensus       328 s~sD~GtY~CvA~  340 (767)
                      ..+|.|+|.|.+.
T Consensus        85 ~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          85 QAEDLAVYYCKQS   97 (113)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCCCeEEEeccc
Confidence            9999999999764

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=86.90  E-value=0.2  Score=42.15  Aligned_cols=79  Identities=20%  Similarity=0.304  Sum_probs=45.8

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCee---ccC---C-CcccccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVP---IQN---E-SMSASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~---l~~---~-s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      +..+.+..|+.++|.|.... ....+.|++  .+..   +..   . ...........+...........|.|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D   84 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELED   84 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCC
Confidence            34567789999999997544 345788987  2321   110   0 000000000111111222334689999999999


Q ss_pred             CCceeEeec
Q psy12044        332 NGTFVCVAE  340 (767)
Q Consensus       332 ~GtY~CvA~  340 (767)
                      .|.|.|.+.
T Consensus        85 sa~YyCa~~   93 (111)
T d2esve1          85 SGVYFCASS   93 (111)
T ss_dssp             CEEEEEEEE
T ss_pred             CceEEEeee
Confidence            999999764

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.52  E-value=0.25  Score=41.52  Aligned_cols=77  Identities=17%  Similarity=0.379  Sum_probs=44.1

Q ss_pred             eeecccccccccccccc--cCCCcEEEeec--Cee---ccCCCccccccc-----ceeecccCcceeeeEEEEeeeccCC
Q psy12044        264 LEIQEGKNVSLLCKVSA--IPEAKITWLFD--GVP---IQNESMSASESH-----AVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g--~P~p~itW~~~--g~~---l~~~s~~~~~~~-----~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      ..+.+|+.++|.|...+  .....+.|.+.  +..   +...........     ++... .........|.|.++..+|
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~-~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILE-DYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEE-EETTTTEEEEEECSCCGGG
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEE-EECCCCEEEEEEccCCccc
Confidence            55678999999997653  34456789872  221   111000000000     11111 1112234579999999999


Q ss_pred             CCceeEeecc
Q psy12044        332 NGTFVCVAEN  341 (767)
Q Consensus       332 ~GtY~CvA~N  341 (767)
                      .|.|.|....
T Consensus        88 sg~Y~Cav~~   97 (113)
T d1smoa_          88 SGLYQCVIYQ   97 (113)
T ss_dssp             CEEEEEEECC
T ss_pred             CceEEEEEEC
Confidence            9999998743

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=86.34  E-value=0.42  Score=40.13  Aligned_cols=82  Identities=12%  Similarity=0.185  Sum_probs=46.6

Q ss_pred             CccceeecccccccccccccccCCCcEEEeec--CeeccC------CCcccccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        260 STFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GVPIQN------ESMSASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       260 ~~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~~l~~------~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      .+..+.+.+|+.++|.|..... ...+.|+..  +.....      ............+...........|.|.++..+|
T Consensus         7 ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1           7 SPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             ECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             cCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            3445678899999999986543 457899872  221110      0000000000001111112234579999999999


Q ss_pred             CCceeEeeccC
Q psy12044        332 NGTFVCVAENQ  342 (767)
Q Consensus       332 ~GtY~CvA~N~  342 (767)
                      .+.|.|.+...
T Consensus        86 sa~YyCa~~~~   96 (113)
T d1nfdb1          86 SAMYFCASSLR   96 (113)
T ss_dssp             CEEECEEEESS
T ss_pred             ceeEEEEeecC
Confidence            99999986543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=86.25  E-value=0.23  Score=41.78  Aligned_cols=79  Identities=20%  Similarity=0.317  Sum_probs=45.7

Q ss_pred             ccceeecccccccccccccccCCCcEEEeec--Ce---eccC---C-CcccccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLFD--GV---PIQN---E-SMSASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~~--g~---~l~~---~-s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      +..+.+.+|+.++|.|.... ....+.|+..  ++   .+..   . .........-.+...........|.|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence            34566789999999998543 3467899872  22   1110   0 000000000001111122235689999999999


Q ss_pred             CCceeEeec
Q psy12044        332 NGTFVCVAE  340 (767)
Q Consensus       332 ~GtY~CvA~  340 (767)
                      .+.|.|.+.
T Consensus        85 sa~YyCa~~   93 (112)
T d1kgce1          85 SAVYLCASS   93 (112)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEeee
Confidence            999999875

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=85.99  E-value=0.27  Score=41.22  Aligned_cols=75  Identities=15%  Similarity=0.297  Sum_probs=46.2

Q ss_pred             ceeecccccccccccccccCCCcEEEee--cCe---ecc-CCCccccccc-ceeecccCcceeeeEEEEeeeccCCCCce
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEAKITWLF--DGV---PIQ-NESMSASESH-AVYSTEEGTEIKKSELLIYNSNIDDNGTF  335 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~---~l~-~~s~~~~~~~-~~~~~~~g~~~~~s~L~I~nvs~sD~GtY  335 (767)
                      .+.+..|+.++|.|.........+.|+.  .+.   .+. .......... .+...   .......|.|.++..+|.+.|
T Consensus         8 s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~---~~~~~~~L~I~~l~~~Dsa~Y   84 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGS---TSGTTATLTISGAQPEDEAAY   84 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEE---EETTEEEEEETTCCGGGCSEE
T ss_pred             eeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeec---CCCCEeeeeEcCccccCCceE
Confidence            4667789999999987666666788987  232   121 1111111111 11111   112346799999999999999


Q ss_pred             eEeec
Q psy12044        336 VCVAE  340 (767)
Q Consensus       336 ~CvA~  340 (767)
                      .|.+.
T Consensus        85 yCA~~   89 (108)
T d1nfde1          85 YCLSS   89 (108)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99865

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.93  E-value=0.14  Score=50.49  Aligned_cols=51  Identities=16%  Similarity=0.138  Sum_probs=24.6

Q ss_pred             CccccCCCCcceEEe---eCCc--eEEEeccccCCCcchhhhhhhCCCCcccchhhcccc
Q psy12044        449 YIIADGHNDMMLYAT---DSGI--LVATNNMNTYPSYSISYQIEQNPDLVNDAESVDKDR  503 (767)
Q Consensus       449 nlIG~GgfG~VYKG~---~dG~--~VA~~~~~~~~~~~~~~~~e~npdlin~~e~~~~~~  503 (767)
                      ..||+|+||.||||+   .+|+  .||++.........    .+.--+|.+|++...+.+
T Consensus        14 ~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~----~~~~~~~~~Ei~~l~~l~   69 (273)
T d1u46a_          14 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ----PEAMDDFIREVNAMHSLD   69 (273)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC------------CHHHHHHHHHHHHHHHCC
T ss_pred             EEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCC----HHHHHHHHHHHHHHHhCC
Confidence            469999999999997   3333  67877621110000    000114677777666554

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.12  E-value=0.49  Score=39.93  Aligned_cols=78  Identities=14%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             ceeecccccccccccccccCCC---cEEEeec--Cee---cc---CCCcccccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPEA---KITWLFD--GVP---IQ---NESMSASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~p---~itW~~~--g~~---l~---~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      .+.+..|..++|.|........   .+.|++.  +..   +.   ........... .+...........|.|.++..+|
T Consensus         8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~l~~~D   86 (118)
T d1i8lc_           8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDD-SICTGTSSGNQVNLTIQGLRAMD   86 (118)
T ss_dssp             EEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSS-CSCCCCBCSSEEEEEECSCCGGG
T ss_pred             EEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCC-cEEeEcCCCCEEEEEeeccccCC
Confidence            4567789999999987544433   5889872  221   10   00000000000 11111223345689999999999


Q ss_pred             CCceeEeecc
Q psy12044        332 NGTFVCVAEN  341 (767)
Q Consensus       332 ~GtY~CvA~N  341 (767)
                      .|.|.|.+..
T Consensus        87 sa~YyCa~~~   96 (118)
T d1i8lc_          87 TGLYICKVEL   96 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeEec
Confidence            9999997754

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.89  E-value=0.16  Score=51.26  Aligned_cols=29  Identities=24%  Similarity=0.241  Sum_probs=21.3

Q ss_pred             CCCCCccccCCCCcceEEe-e-CC-----ceEEEec
Q psy12044        445 VNGGYIIADGHNDMMLYAT-D-SG-----ILVATNN  473 (767)
Q Consensus       445 Fs~~nlIG~GgfG~VYKG~-~-dG-----~~VA~~~  473 (767)
                      |.-..+||+|+||+||||+ . .+     ..||++.
T Consensus        39 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~   74 (325)
T d1rjba_          39 LEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKM   74 (325)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEE
T ss_pred             eEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEE
Confidence            3334589999999999998 3 22     2588776

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=84.86  E-value=0.37  Score=40.42  Aligned_cols=79  Identities=16%  Similarity=0.284  Sum_probs=46.2

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCeeccCC-------CcccccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQNE-------SMSASESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~~~-------s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      +..+.+..|+.++|.|.... ....+.|+.  .++.....       ......... .+...........|.|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~D   83 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPG-RFSGRQFSNSRSEMNVSTLELGD   83 (113)
T ss_dssp             CSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCT-TEEEEECTTSCEEEEECSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeeccccccccccccc-ceeeccCcCCeeEEEECCCCccc
Confidence            34567789999999998654 346788987  33222110       000000000 00011112234679999999999


Q ss_pred             CCceeEeecc
Q psy12044        332 NGTFVCVAEN  341 (767)
Q Consensus       332 ~GtY~CvA~N  341 (767)
                      .+.|.|.+..
T Consensus        84 sa~YyCA~~~   93 (113)
T d2ntsp1          84 SALYLCASSL   93 (113)
T ss_dssp             CEEEEEEEES
T ss_pred             ceeeeeeeeC
Confidence            9999998754

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=84.29  E-value=0.27  Score=41.49  Aligned_cols=77  Identities=19%  Similarity=0.341  Sum_probs=45.9

Q ss_pred             ccceeecccccccccccccccC-----CCcEEEeec--Ce---ecc-CCCccccc-ccceeecccCcceeeeEEEEeeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIP-----EAKITWLFD--GV---PIQ-NESMSASE-SHAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P-----~p~itW~~~--g~---~l~-~~s~~~~~-~~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      +..+.+.+|+.++|.|...+..     ...+.|+..  +.   .+. ........ ...+...   .......|.|.++.
T Consensus         9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~---~~~~~~~L~I~~~~   85 (113)
T d1n4xl_           9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGS---GSGTDFTLKISRVE   85 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---ECSSEEEEEESSCC
T ss_pred             CCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeee---ccCCcccCccCCCC
Confidence            4456788999999999875432     356889872  22   111 11111111 1111111   12234689999999


Q ss_pred             cCCCCceeEeec
Q psy12044        329 IDDNGTFVCVAE  340 (767)
Q Consensus       329 ~sD~GtY~CvA~  340 (767)
                      .+|.+.|.|...
T Consensus        86 ~~DsavYyCa~~   97 (113)
T d1n4xl_          86 AEDLGIYYCFQG   97 (113)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccCEEEEEEEC
Confidence            999999999654

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.98  E-value=0.84  Score=36.08  Aligned_cols=78  Identities=18%  Similarity=0.261  Sum_probs=47.2

Q ss_pred             eeeccccccccccccccc-CCCcEEEee-cCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeecc
Q psy12044        264 LEIQEGKNVSLLCKVSAI-PEAKITWLF-DGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAEN  341 (767)
Q Consensus       264 ~~v~~G~~vsL~C~a~g~-P~p~itW~~-~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N  341 (767)
                      .++..|+...+.|-+.-. ..|+++|-+ ++.........   ......-.......-..|++..+..+|+|.|.|.|.-
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~---pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf   89 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVG---PQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF   89 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCB---TTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecC---CccccchhhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence            356678889999987654 579999987 44322211110   0011111122222334688888999999999999865


Q ss_pred             CCC
Q psy12044        342 QAG  344 (767)
Q Consensus       342 ~~G  344 (767)
                      ..+
T Consensus        90 ~s~   92 (104)
T d1xaua_          90 NSQ   92 (104)
T ss_dssp             TTE
T ss_pred             Chh
Confidence            443

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.64  E-value=0.19  Score=49.98  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=15.6

Q ss_pred             CccccCCCCcceEEe--eC-------CceEEEecc
Q psy12044        449 YIIADGHNDMMLYAT--DS-------GILVATNNM  474 (767)
Q Consensus       449 nlIG~GgfG~VYKG~--~d-------G~~VA~~~~  474 (767)
                      ..||+|+||.||+|+  ..       +..||+|..
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~   53 (299)
T d1fgka_          19 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKML   53 (299)
T ss_dssp             EECC-----CEEEEEEECC----CCCEEEEEEECC
T ss_pred             eEEeecCCcEEEEEEEcCCCcccccCceEEEEEEE
Confidence            479999999999997  22       247898873

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.48  E-value=0.33  Score=40.85  Aligned_cols=75  Identities=17%  Similarity=0.229  Sum_probs=45.2

Q ss_pred             ceeecccccccccccccccCC---CcEEEee--cCeec---c-CCCcccccc-cceeecccCcceeeeEEEEeeeccCCC
Q psy12044        263 YLEIQEGKNVSLLCKVSAIPE---AKITWLF--DGVPI---Q-NESMSASES-HAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P~---p~itW~~--~g~~l---~-~~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      .+.+..|+.++|.|...+...   ..+.|+.  .+...   . ......+.. ..+....   ......|.|.++..+|.
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~---~~~~~~L~I~~~~~~Ds   85 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL---IGNKAALTITGAQTEDE   85 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE---ETTEEEEEEESCCGGGC
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecc---cccceeeecCCCCcccc
Confidence            356789999999998865332   2378886  33221   1 111111111 1122111   12356899999999999


Q ss_pred             CceeEeec
Q psy12044        333 GTFVCVAE  340 (767)
Q Consensus       333 GtY~CvA~  340 (767)
                      |.|.|...
T Consensus        86 a~YyCa~~   93 (110)
T d1oaql_          86 AIYFCALW   93 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EeEEEEcc
Confidence            99999865

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=83.48  E-value=0.31  Score=41.06  Aligned_cols=77  Identities=18%  Similarity=0.264  Sum_probs=45.2

Q ss_pred             ccceeeccccccccccccccc-----CCCcEEEee--cCee---cc-CCCcccccc-cceeecccCcceeeeEEEEeeec
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI-----PEAKITWLF--DGVP---IQ-NESMSASES-HAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~-----P~p~itW~~--~g~~---l~-~~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      +..+.+..|+.++|.|...+.     ....+.|+.  .+..   +. .......+. ..+...   .......|.|.++.
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~---~~~~~~~L~I~~~~   84 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGS---GSGTDFTLKISRVE   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCC
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEee---CCCCEEEEEECccc
Confidence            345678899999999986543     234588987  2321   11 111111111 111111   11234579999999


Q ss_pred             cCCCCceeEeec
Q psy12044        329 IDDNGTFVCVAE  340 (767)
Q Consensus       329 ~sD~GtY~CvA~  340 (767)
                      .+|.+.|.|...
T Consensus        85 ~eDsAvYYC~~~   96 (112)
T d1ncwl1          85 AEDLGVYYCWQG   96 (112)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCcCEeEEEEcC
Confidence            999999999653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=83.42  E-value=0.59  Score=39.96  Aligned_cols=78  Identities=26%  Similarity=0.273  Sum_probs=45.5

Q ss_pred             ceeecccccccccccccccC--CCcEEEee--cCeecc---C----CCcc-ccc--ccceeecccCcceeeeEEEEeeec
Q psy12044        263 YLEIQEGKNVSLLCKVSAIP--EAKITWLF--DGVPIQ---N----ESMS-ASE--SHAVYSTEEGTEIKKSELLIYNSN  328 (767)
Q Consensus       263 ~~~v~~G~~vsL~C~a~g~P--~p~itW~~--~g~~l~---~----~s~~-~~~--~~~~~~~~~g~~~~~s~L~I~nvs  328 (767)
                      .+....|+.++|.|.+++..  ...+.|+.  .++.+.   .    .... ...  ..++... .........|.|.++.
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~-~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVD-RIPETSTSTLTIHNVE   88 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEE-EETTTTEEEEEECSCC
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEe-eeccccceeecccccc
Confidence            45667899999999987643  45788987  232111   0    0000 000  0111111 1111234579999999


Q ss_pred             cCCCCceeEeecc
Q psy12044        329 IDDNGTFVCVAEN  341 (767)
Q Consensus       329 ~sD~GtY~CvA~N  341 (767)
                      .+|.+.|.|....
T Consensus        89 ~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          89 KQDIATYYCALWE  101 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeeeC
Confidence            9999999998643

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.84  E-value=0.59  Score=38.68  Aligned_cols=74  Identities=18%  Similarity=0.350  Sum_probs=43.9

Q ss_pred             ccccccccccccccC--CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccCCC
Q psy12044        268 EGKNVSLLCKVSAIP--EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQAG  344 (767)
Q Consensus       268 ~G~~vsL~C~a~g~P--~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~~G  344 (767)
                      .++.++|.|.+.+..  ...+.|..++..+.........   .....++.....+.|.+..-.-.....|+|.+.-...
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~---~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQ---PRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECC---CEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeee---eEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            355688999998853  3589999988766432211000   1122334455556666654433445679999986543

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.76  E-value=0.35  Score=40.81  Aligned_cols=78  Identities=15%  Similarity=0.115  Sum_probs=44.2

Q ss_pred             cceeecccccccccccccccCCC---cEEEeec--Ceec---c---CCCcccccccceeecccCcceeeeEEEEeeeccC
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEA---KITWLFD--GVPI---Q---NESMSASESHAVYSTEEGTEIKKSELLIYNSNID  330 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p---~itW~~~--g~~l---~---~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~s  330 (767)
                      ..+.+..|+.++|.|........   .+.|++.  +...   .   ............ +...........|.|.++..+
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYP-FCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCT-TEEEEEETTEEEEEECSCCGG
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCc-EEEEeCCCCEEEEEhhcCccc
Confidence            34567789999999987543332   4779872  2211   0   001000000000 000111223568999999999


Q ss_pred             CCCceeEeec
Q psy12044        331 DNGTFVCVAE  340 (767)
Q Consensus       331 D~GtY~CvA~  340 (767)
                      |.|.|.|...
T Consensus        86 Dsa~YyCa~~   95 (117)
T d1dqta_          86 DTGLYLCKVE   95 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCEeEEEEEe
Confidence            9999999875

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=82.51  E-value=0.72  Score=38.52  Aligned_cols=79  Identities=16%  Similarity=0.384  Sum_probs=45.6

Q ss_pred             ccceeecccccccccccccccCCCcEEEee--cCeecc---C---CCccc-ccccceeecccCcceeeeEEEEeeeccCC
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQ---N---ESMSA-SESHAVYSTEEGTEIKKSELLIYNSNIDD  331 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~---~---~s~~~-~~~~~~~~~~~g~~~~~s~L~I~nvs~sD  331 (767)
                      +..+.+.+|+.++|.|... .....+.|++  .+..+.   .   ..... ......+.. .........|.|.++..+|
T Consensus         7 P~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~D   84 (113)
T d1j8he1           7 SRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSV-SREKKERFSLILESASTNQ   84 (113)
T ss_dssp             CSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEE-ECSSTTBCEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceE-EeccCcEeeeEeccCccCC
Confidence            4456778999999999753 3356788987  332111   0   00000 000000111 1111224579999999999


Q ss_pred             CCceeEeecc
Q psy12044        332 NGTFVCVAEN  341 (767)
Q Consensus       332 ~GtY~CvA~N  341 (767)
                      .|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (113)
T d1j8he1          85 TSMYLCASSS   94 (113)
T ss_dssp             CEEEEEEEEC
T ss_pred             cccEEeeEcc
Confidence            9999998764

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=82.08  E-value=1  Score=36.98  Aligned_cols=69  Identities=22%  Similarity=0.330  Sum_probs=42.7

Q ss_pred             cccccccccccccccC--CCcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        267 QEGKNVSLLCKVSAIP--EAKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       267 ~~G~~vsL~C~a~g~P--~p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..|...+|.|.+.++.  ...++|..+|..+.......    ......++.....+.|.+.   ..+...|+|.+.-.
T Consensus        15 ~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t----~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~   85 (100)
T d1muja1          15 LLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYET----SFFVNRDYSFHKLSYLTFI---PSDDDIYDCKVEHW   85 (100)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEEC----CCEECTTSCEEEEEEEEEC---CCTTCCEEEEEECT
T ss_pred             ccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceee----eeEECCCCCEEEEEEeEEc---CCCCCEEEEEEEEC
Confidence            3467778999999874  46899999887664321110    1122233444445555543   45667899999753

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.69  E-value=0.45  Score=39.52  Aligned_cols=77  Identities=18%  Similarity=0.240  Sum_probs=43.8

Q ss_pred             ecccccccccccccccCC--CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        266 IQEGKNVSLLCKVSAIPE--AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       266 v~~G~~vsL~C~a~g~P~--p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      +..+..++|.|.+.++..  ..+.|..++..+.................++.....+.|.+..-.-.....|+|.+...
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~   95 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHE   95 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeC
Confidence            345678899999988643  37999998876654322111000000112334444556665543333356899999754

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=81.59  E-value=0.43  Score=40.04  Aligned_cols=77  Identities=18%  Similarity=0.176  Sum_probs=45.0

Q ss_pred             ccceeeccccccccccccccc----CCCcEEEeec--Ceec----cCCCcccccc-cceeecccCcceeeeEEEEeeecc
Q psy12044        261 TFYLEIQEGKNVSLLCKVSAI----PEAKITWLFD--GVPI----QNESMSASES-HAVYSTEEGTEIKKSELLIYNSNI  329 (767)
Q Consensus       261 ~~~~~v~~G~~vsL~C~a~g~----P~p~itW~~~--g~~l----~~~s~~~~~~-~~~~~~~~g~~~~~s~L~I~nvs~  329 (767)
                      +..+.+..|+.++|.|..+..    ....+.|+..  +...    ........+. ..+...   .......|.|.++..
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~---~~~~~~~L~I~~~~~   84 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGS---GSGTDFTLNIHPVEE   84 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE---EETTEEEEEESSCCG
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEe---cCCCchhcccccccc
Confidence            345678899999999976542    2235889872  2211    1111111111 111111   112346799999999


Q ss_pred             CCCCceeEeec
Q psy12044        330 DDNGTFVCVAE  340 (767)
Q Consensus       330 sD~GtY~CvA~  340 (767)
                      +|.+.|.|.+.
T Consensus        85 ~DsA~YyCa~~   95 (111)
T d2gsia1          85 EDAATYYCSHI   95 (111)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCceEEEEEC
Confidence            99999999764

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=81.27  E-value=0.56  Score=39.17  Aligned_cols=78  Identities=12%  Similarity=0.332  Sum_probs=45.0

Q ss_pred             cceeecccccccccccccccCCCcEEEee--cCeeccC------CCc-ccccccceeecccCcceeeeEEEEeeeccCCC
Q psy12044        262 FYLEIQEGKNVSLLCKVSAIPEAKITWLF--DGVPIQN------ESM-SASESHAVYSTEEGTEIKKSELLIYNSNIDDN  332 (767)
Q Consensus       262 ~~~~v~~G~~vsL~C~a~g~P~p~itW~~--~g~~l~~------~s~-~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~  332 (767)
                      ....+..|+.++|.|.... ....+.|+.  .+.....      ... .........+. .........|.|.++..+|.
T Consensus         7 ~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~~~~~Ds   84 (112)
T d2bnub1           7 KFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNV-SRSTTEDFPLRLLSAAPSQT   84 (112)
T ss_dssp             SEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEE-CCSSSSBCCEEESSCCGGGC
T ss_pred             CeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeE-ecCCCCEEEEEECCCCHHHC
Confidence            3456788999999997653 456789987  3321110      000 00000000111 11122235799999999999


Q ss_pred             CceeEeecc
Q psy12044        333 GTFVCVAEN  341 (767)
Q Consensus       333 GtY~CvA~N  341 (767)
                      +.|.|.+..
T Consensus        85 avYyCA~~~   93 (112)
T d2bnub1          85 SVYFCASSY   93 (112)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEeecC
Confidence            999997653

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.14  E-value=1.4  Score=36.04  Aligned_cols=68  Identities=16%  Similarity=0.195  Sum_probs=42.3

Q ss_pred             cccccccccccccccCC--CcEEEeecCeeccCCCcccccccceeecccCcceeeeEEEEeeeccCCCCceeEeeccC
Q psy12044        267 QEGKNVSLLCKVSAIPE--AKITWLFDGVPIQNESMSASESHAVYSTEEGTEIKKSELLIYNSNIDDNGTFVCVAENQ  342 (767)
Q Consensus       267 ~~G~~vsL~C~a~g~P~--p~itW~~~g~~l~~~s~~~~~~~~~~~~~~g~~~~~s~L~I~nvs~sD~GtY~CvA~N~  342 (767)
                      ..|...+|.|.+.++..  ..++|..++..+......     ......+|.....+.|.+   ...+.+.|+|.+.-.
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~-----~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHS-----DLSFSKDWSFYLLYYTEF---TPTEKDEYACRVNHV   86 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEC-----CCEECTTSCEEEEEEEEE---CCCSSCCEEEEEECT
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCcccc-----ceecCCCCcEEEEEEeEE---CCCCCCEEEEEEEeC
Confidence            45677889999999743  478999998876432221     112233444444444444   345667899998753