Psyllid ID: psy12056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MDPLGTTEISGENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPPLKMDYALINIPVNLTYVPIHKINQPPWMQI
Secondary Structure (PSIPRED)
ccccccEEEEcccEEEEEEcccccEEEEEEcccccccccccccccccEEEEEEcccccccccccccccccccEEEEEEccccHHHHHHHHHHccccEEEEEEccccccccEEEEEcccccccEEEEEEEEEHHHHHHHHHHHHHccccEEEEEEccccEEEcccccccccccccccEEEEEEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccEEEEEEcccccEEEEEEccHHHcccccccccccccEEEEEccccccccccccHHHHcccEEEEEccccHHHHHHHHHHHcccEEEEEEEccccccccEEEEcccccccccEEEEEEEccccHHHHHHHHHHccccEEEEEcccccccccccHcccccccccEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdplgtteisgentyfeiiqpeelrytfkirpakdfgssfngsfsgekirmvpanppwscthptnantikGHIALIERGECSFVHKAMIAESigargviisdndpdsddFYVEMISdqskreihipVAFLVGKNGRVIKNALKRLNMDYAlinipvnltyvpihkinqpplkmdyalinipvnltyvpihkinqppwmqi
Flexible Loop (DISEMBL)
mdplgtteisgentyfeiiqpeELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESigargviisdndpdSDDFYVEMISDQSKREIHIpvaflvgkngRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPPLKMDYALINIPVNLTYVPIhkinqppwmqi
Low Complexity Region (SEG)
MDPLGTTEISGENTYFEIIQPEELRYTFKIRPAKDfgssfngsfsgEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPPLKMDYALINIPVNLTYVPIHKINQPPWMQI
Disordered region (IsUnstruct)
************NTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPPLKMDYALINIPVNLTYVPIHKIN*******
Disordered Region (DISOPRED)
****G*T*ISGENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPPLKMDYALINIPVNLTYVPIHKINQPPWMQI
Disordered Region (DISEMBL)
MDPLGTTEISGENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPPLKMDYALINIPVNLTYVPIHKINQPPWMQI
Disordered Region (DISPRO)
*DPLGTTEISGENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPPLKMDYALINIPVNLTYVPIHKINQPP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPLGTTEISGENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPPLKMDYALINIPVNLTYVPIHKINQPPWMQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9W1W9	196	PRADC1-like protein OS=Dr	yes	N/A	0.83	0.846	0.476	6e-38
Q9D9N8	188	Protease-associated domai	yes	N/A	0.77	0.819	0.448	1e-36
Q9BSG0	188	Protease-associated domai	yes	N/A	0.77	0.819	0.448	2e-36
Q6GQB9	913	ER degradation-enhancing	N/A	N/A	0.745	0.163	0.292	2e-11
Q9BZQ6	932	ER degradation-enhancing	no	N/A	0.465	0.099	0.350	9e-09
Q2HXL6	931	ER degradation-enhancing	no	N/A	0.465	0.099	0.357	1e-08
Q0WMJ8	540	Signal peptide peptidase-	yes	N/A	0.455	0.168	0.347	6e-08
Q53P98	534	Signal peptide peptidase-	yes	N/A	0.47	0.176	0.32	1e-05
Q5Z413	542	Signal peptide peptidase-	yes	N/A	0.475	0.175	0.303	3e-05
Q8W469	540	Signal peptide peptidase-	no	N/A	0.455	0.168	0.326	0.0001

>sp|Q9W1W9|PADC1_DROME PRADC1-like protein OS=Drosophila melanogaster GN=CG9849 PE=2 SV=1

 Score =  157 bits (396), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 117/170 (68%), Gaps = 4/170 (2%)

Query: 3   PLGTTEISGENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTH 62
           P+ T +I   + +FEI+ P EL YT+++RPAKDFGS+F+    G  + +V  +PP +C  
Sbjct: 25  PITTQDIIAGDVFFEILSPSELEYTYRLRPAKDFGSAFSERLEG--VPLVITDPPGACQE 82

Query: 63  PTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDF--YVEMISDQSK 120
             NA  + G +ALI+RGECSF+ K + AE+ GA   II++ +P S +F  Y+EMI D S+
Sbjct: 83  IRNARDLNGGVALIDRGECSFLTKTLRAEAAGALAAIITEYNPSSPEFEHYIEMIHDNSQ 142

Query: 121 REIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
           ++ +IP  FL+GKNG +I++ L+RL   +ALINIPVNLT+ P  KIN PP
Sbjct: 143 QDANIPAGFLLGKNGVIIRSTLQRLKRVHALINIPVNLTFTPPSKINHPP 192

May be involved in iversification of muscle cell fates.
Drosophila melanogaster (taxid: 7227)

>sp|Q9D9N8|PADC1_MOUSE Protease-associated domain-containing protein 1 OS=Mus musculus GN=Pradc1 PE=2 SV=1

 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 2/156 (1%)

Query: 15  YFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIA 74
           YF+++ P ++RY F   PAKDFG  F+  +  E+I +VPA PP +C   +N   I+  IA
Sbjct: 31  YFQVLSPGDIRYIFTATPAKDFGGIFHTRY--EQIHLVPAEPPEACGELSNGFFIQDQIA 88

Query: 75  LIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN 134
           L+ERG CSF+ K  + +  G R VIISDN  D+D FYVEMI D ++R   IP  FL+G++
Sbjct: 89  LVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEMIQDSTQRTADIPALFLLGRD 148

Query: 135 GRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
           G +I+ +L++  + +A+I+IPVN+T +P  ++ QPP
Sbjct: 149 GYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPP 184

Mus musculus (taxid: 10090)

>sp|Q9BSG0|PADC1_HUMAN Protease-associated domain-containing protein 1 OS=Homo sapiens GN=PRADC1 PE=1 SV=1

 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 2/156 (1%)

Query: 15  YFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIA 74
           YF+++ P ++RY F   PAKDFG  F+  +  E+I +VPA PP +C   +N   I+  IA
Sbjct: 31  YFQVLSPGDIRYIFTATPAKDFGGIFHTRY--EQIHLVPAEPPEACGELSNGFFIQDQIA 88

Query: 75  LIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN 134
           L+ERG CSF+ K  + +  G R VIISDN  D+D FYVEMI D ++R   IP  FL+G++
Sbjct: 89  LVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEMIQDSTQRTADIPALFLLGRD 148

Query: 135 GRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
           G +I+ +L++  + +A+I+IPVN+T +P  ++ QPP
Sbjct: 149 GYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPP 184

Homo sapiens (taxid: 9606)

>sp|Q6GQB9|EDEM3_XENLA ER degradation-enhancing alpha-mannosidase-like protein 3 OS=Xenopus laevis GN=edem3 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 5/154 (3%)

Query: 25  RYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFV 84
           R      PA+ FG   +   +G +  +  A P   C+  TN   I+G IAL++RG+C F 
Sbjct: 646 RVVLTAGPAQ-FGMDLSKHLAGAQGLVARAEPYSGCSDITNGQAIQGKIALMQRGQCMFA 704

Query: 85  HKAMIAESIGA-RGVIISDNDPDSDDF--YVEMISD-QSKREIHIPVAFLVGKNGRVIKN 140
            KA   +  GA  G++I DN+  S D     +M  D +S  ++ IP+ FL  K G +I +
Sbjct: 705 EKARNVQKAGAIGGIVIDDNEGSSSDTAPLFQMAGDGKSTDDVTIPMLFLFSKEGNIILD 764

Query: 141 ALKRLNMDYALINIPVNLTYVPIHKINQPPLKMD 174
           A++       L++       +      Q P++ D
Sbjct: 765 AIREYQQVEVLLSDKAKDRDLESESGEQKPVEND 798

May be involved in endoplasmic reticulum-associated degradation (ERAD).

Xenopus laevis (taxid: 8355)

>sp|Q9BZQ6|EDEM3_HUMAN ER degradation-enhancing alpha-mannosidase-like protein 3 OS=Homo sapiens GN=EDEM3 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 4/97 (4%)

Query: 51  MVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGA-RGVIISDNDPDSDD 109
           +  + P   C+  TN   + G IALI+RG+C F  KA   ++ GA  G++I DN+  S D
Sbjct: 684 VASSKPSNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSD 743

Query: 110 F--YVEMISD-QSKREIHIPVAFLVGKNGRVIKNALK 143
                +M  D +   +I IP+ FL  K G +I +A++
Sbjct: 744 TAPLFQMAGDGKDTDDIKIPMLFLFSKEGSIILDAIR 780

Involved in endoplasmic reticulum-associated degradation (ERAD). Accelerates the glycoprotein ERAD by proteasomes. This process depends on mannose-trimming from the N-glycans. Seems to have alpha 1,2-mannosidase activity.

Homo sapiens (taxid: 9606)

>sp|Q2HXL6|EDEM3_MOUSE ER degradation-enhancing alpha-mannosidase-like protein 3 OS=Mus musculus GN=Edem3 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 51  MVPANPPWS-CTHPTNANTIKGHIALIERGECSFVHKAMIAESIGA-RGVIISDNDPDSD 108
            V ++ P++ C+  TN   + G IALI+RG+C F  KA   ++ GA  G++I DN+  S 
Sbjct: 684 FVASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSS 743

Query: 109 DF--YVEMISD-QSKREIHIPVAFLVGKNGRVIKNALK 143
           D     +M  D +   +I IP+ FL  K G +I +A++
Sbjct: 744 DTAPLFQMAGDGKDTDDIKIPMLFLFSKEGSIILDAIR 781

Involved in endoplasmic reticulum-associated degradation (ERAD). Accelerates the glycoprotein ERAD by proteasomes. This process depends on mannose-trimming from the N-glycans. Seems to have alpha 1,2-mannosidase activity.

Mus musculus (taxid: 10090)

>sp|Q0WMJ8|SIPL4_ARATH Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 49  IRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSD 108
           I++  A+PP  C+ P N  T  G + L+ RG+CSF  K  +AE+ GA  ++I +N  D  
Sbjct: 84  IKLAIADPPDCCSTPKNKLT--GEVILVHRGKCSFTTKTKVAEAAGASAILIINNSTDLF 141

Query: 109 DFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALK 143
               E    ++  +I IPV  L    GR ++N +K
Sbjct: 142 KMVCE--KGENVLDITIPVVMLPVDAGRSLENIVK 174

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q53P98|SIPL2_ORYSJ Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 6/100 (6%)

Query: 46  GEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDP 105
            +K   V ANP   C++ T+  T   +IA+ +RGEC+F  KA IA++ GA G+++ +   
Sbjct: 83  AQKTFAVLANPLDCCSNSTSKLT--NYIAIAQRGECAFTAKAKIAQTGGAVGLLVIN--- 137

Query: 106 DSDDFYVEMISD-QSKREIHIPVAFLVGKNGRVIKNALKR 144
           D+++ Y  + SD  +   + IPV  +    G+ +K  L +
Sbjct: 138 DNEELYKMVCSDNDTSINVTIPVVMIPQSAGKKMKGLLDQ 177

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q5Z413|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 48  KIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDS 107
           + R++ A+P   CT P     + G I L++RG+C F  KA  AE+ GA G+II ++  + 
Sbjct: 80  RTRLMLADPIDCCTSPKE--KVSGDILLVQRGKCKFTKKAKFAEAAGASGIIIINHVHEL 137

Query: 108 DDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLN 146
                E   +++  +I+IP   L    G  +   L   N
Sbjct: 138 YKMVCE--KNETDLDINIPAVLLPRDAGFALHTVLTSGN 174

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q8W469|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 48  KIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDS 107
           +  +V ANP  SCT P   N + G + ++ERG C F  KA  AE+ GA  ++I +N  + 
Sbjct: 84  QTHLVFANPRDSCT-PLK-NKLSGDVVIVERGNCRFTAKANNAEAAGASALLIINNQKEL 141

Query: 108 DDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNAL 142
                E   D++  +I IP   L    G  ++  L
Sbjct: 142 YKMVCE--PDETDLDIQIPAVMLPQDAGASLQKML 174

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
91076512	213	PREDICTED: similar to CG9849 CG9849-PA [	0.845	0.793	0.526	1e-46
242005160	171	conserved hypothetical protein [Pediculu	0.815	0.953	0.490	1e-44
48098499	223	PREDICTED: PAP21-like protein-like isofo	0.8	0.717	0.511	3e-43
380024643	223	PREDICTED: PRADC1-like protein-like [Api	0.8	0.717	0.511	4e-43
328783724	214	PREDICTED: PAP21-like protein-like isofo	0.8	0.747	0.511	4e-43
157105889	214	hypothetical protein AaeL_AAEL004406 [Ae	0.845	0.789	0.502	5e-42
170057943	217	PA domain-containing protein [Culex quin	0.845	0.778	0.531	8e-42
94469374	177	PA domain-containing protein [Aedes aegy	0.835	0.943	0.508	1e-41
383858479	214	PREDICTED: PRADC1-like protein-like isof	0.8	0.747	0.477	2e-41
383858477	223	PREDICTED: PRADC1-like protein-like isof	0.8	0.717	0.477	2e-41

>gi|91076512|ref|XP_973316.1| PREDICTED: similar to CG9849 CG9849-PA [Tribolium castaneum] gi|270002605|gb|EEZ99052.1| hypothetical protein TcasGA2_TC004927 [Tribolium castaneum]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 120/169 (71%)

Query: 2   DPLGTTEISGENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCT 61
           D   T EI   + +FEI+ P EL YT++IRPAKDFG+ FN SF  + + +VP  P + CT
Sbjct: 41  DGATTAEIIAGDIFFEIVDPLELEYTYRIRPAKDFGAPFNESFYIKHVPLVPIQPKFGCT 100

Query: 62  HPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKR 121
            P N   I+G++ALIERGECSF  KA IAE  GA+ VII+D    ++++++EMI D S  
Sbjct: 101 PPENIEDIEGNVALIERGECSFKMKAKIAEKAGAQAVIITDVSKPTEEYFIEMIDDDSSD 160

Query: 122 EIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
           E+HIP AFL+GKNG +I   L+RL   YA+IN+PVNLT+ P+H++NQPP
Sbjct: 161 EVHIPAAFLMGKNGIMITKTLERLKRSYAIINLPVNLTFTPVHEMNQPP 209

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005160|ref|XP_002423440.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506518|gb|EEB10702.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 125/163 (76%)

Query: 8   EISGENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNAN 67
           +I   + +FEII+P+EL YT+KI PA+DFG++FN +FS + + +VP +PP +C    N+ 
Sbjct: 5   DIPRTDIFFEIIEPKELAYTYKIHPAQDFGTTFNETFSVKNVPLVPTDPPHACDKILNSA 64

Query: 68  TIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPV 127
            +  ++AL+ERGECSF+ K++  E  GA  +I+SD+D D+D+ Y+EMI D + R ++IP 
Sbjct: 65  KLYKNVALVERGECSFLSKSINVEKAGALAIIVSDHDKDNDELYIEMIDDNTLRPVNIPA 124

Query: 128 AFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
            FL+GKNG +IK+ LKRLN+++ALIN+PVN++++P++K NQPP
Sbjct: 125 GFLLGKNGHIIKSTLKRLNLNHALINLPVNVSHLPLNKFNQPP 167

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48098499|ref|XP_392077.1| PREDICTED: PAP21-like protein-like isoform 2 [Apis mellifera]

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 14/174 (8%)

Query: 11  GENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIK 70
           G + +FEII P EL YT+K+RPAKDFG+ FN SF  EKI +VP +PP  C    NA  +K
Sbjct: 46  GSDVFFEIIYPPELEYTYKLRPAKDFGAPFNASFLEEKIPLVPTDPPHGCQIVRNAKELK 105

Query: 71  GHIALIERGECSFVHKAMIAESIGARGVIISD-----------NDPDSDDFYVEMISDQ- 118
           G IAL+ERG+CSF  K+++AE  GA+ VII+D           N   +D +Y+EMI D  
Sbjct: 106 GRIALVERGDCSFFAKSIMAEEAGAKAVIIADYHSSSMEESITNSLWADYYYIEMIRDDT 165

Query: 119 --SKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             S + ++IP  FL+GKNG++I+  LKRLN  +ALINIPVNLTY  + K++QPP
Sbjct: 166 IPSSKTVNIPAGFLLGKNGKMIRQTLKRLNQPFALINIPVNLTYTSLDKLHQPP 219

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024643|ref|XP_003696102.1| PREDICTED: PRADC1-like protein-like [Apis florea]

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 14/174 (8%)

Query: 11  GENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIK 70
           G + +FEII P EL YT+K+RPAKDFG+ FN SF  EKI +VP +PP  C    NA  +K
Sbjct: 46  GSDVFFEIIYPPELEYTYKLRPAKDFGAPFNASFLEEKIPLVPTDPPHGCQIVRNAKELK 105

Query: 71  GHIALIERGECSFVHKAMIAESIGARGVIISD-----------NDPDSDDFYVEMISDQ- 118
           G IAL+ERG+CSF  K+++AE  GA+ VII+D           N   +D +Y+EMI D  
Sbjct: 106 GRIALVERGDCSFFAKSIMAEEAGAKAVIIADYHSSSMEESITNSLWADYYYIEMIRDDT 165

Query: 119 --SKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             S + ++IP  FL+GKNG++I+  LKRLN  +ALINIPVNLTY  + K++QPP
Sbjct: 166 IPSSKTVNIPAGFLLGKNGKMIRQTLKRLNQPFALINIPVNLTYTSLDKLHQPP 219

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783724|ref|XP_003250335.1| PREDICTED: PAP21-like protein-like isoform 1 [Apis mellifera]

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 14/174 (8%)

Query: 11  GENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIK 70
           G + +FEII P EL YT+K+RPAKDFG+ FN SF  EKI +VP +PP  C    NA  +K
Sbjct: 37  GSDVFFEIIYPPELEYTYKLRPAKDFGAPFNASFLEEKIPLVPTDPPHGCQIVRNAKELK 96

Query: 71  GHIALIERGECSFVHKAMIAESIGARGVIISD-----------NDPDSDDFYVEMISDQ- 118
           G IAL+ERG+CSF  K+++AE  GA+ VII+D           N   +D +Y+EMI D  
Sbjct: 97  GRIALVERGDCSFFAKSIMAEEAGAKAVIIADYHSSSMEESITNSLWADYYYIEMIRDDT 156

Query: 119 --SKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             S + ++IP  FL+GKNG++I+  LKRLN  +ALINIPVNLTY  + K++QPP
Sbjct: 157 IPSSKTVNIPAGFLLGKNGKMIRQTLKRLNQPFALINIPVNLTYTSLDKLHQPP 210

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105889|ref|XP_001649070.1| hypothetical protein AaeL_AAEL004406 [Aedes aegypti] gi|157105891|ref|XP_001649071.1| hypothetical protein AaeL_AAEL004406 [Aedes aegypti] gi|108879979|gb|EAT44204.1| AAEL004406-PA [Aedes aegypti] gi|403182645|gb|EJY57531.1| AAEL004406-PB [Aedes aegypti]

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 124/173 (71%), Gaps = 4/173 (2%)

Query: 2   DPLGTTEISGENTYFEIIQPEELRYTFKIRPAKDFGSSF-NGSFSGEKIRMVPANPPWSC 60
           D + T +I   + +FEI+ P EL YT++IRPAKDFG+SF + SF  ++ ++VPA P  +C
Sbjct: 38  DGIRTQDIIAGDVFFEIVDPPELEYTYRIRPAKDFGTSFESASFGVKEGKLVPAIPSDAC 97

Query: 61  T-HPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDF--YVEMISD 117
                N   +KG+I L+ERGECSF+ KA+  E +G R VII++ D  SDD+  Y+EMI D
Sbjct: 98  EPDFVNEKDLKGNIVLVERGECSFLTKAINVEQVGGRAVIITEVDSGSDDYDYYIEMIHD 157

Query: 118 QSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
           ++ R+ +IP AFL+GKNG +I+  L +L++ YALIN+PVNLT+V  H+INQPP
Sbjct: 158 KTDRDTNIPAAFLLGKNGLIIRKTLAKLHLRYALINLPVNLTFVAPHEINQPP 210

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170057943|ref|XP_001864704.1| PA domain-containing protein [Culex quinquefasciatus] gi|167877214|gb|EDS40597.1| PA domain-containing protein [Culex quinquefasciatus]

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 117/173 (67%), Gaps = 4/173 (2%)

Query: 2   DPLGTTEISGENTYFEIIQPEELRYTFKIRPAKDFGSSF-NGSFSGEKIRMVPANPPWSC 60
           D + T +I   + +FEI+ P EL YT++IRPAKDFG SF + S      ++VPA P  +C
Sbjct: 41  DGVRTQDIIAGDVFFEIVDPPELEYTYRIRPAKDFGGSFESASMKIRDGKLVPAVPSDAC 100

Query: 61  T-HPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDD--FYVEMISD 117
                N   +KG+IAL+ERGECSF+ KA+  E  G R VII++ D  SDD  FY+EMI D
Sbjct: 101 EPEFLNEKDLKGNIALVERGECSFLTKAINVERAGGRAVIITEIDTHSDDYDFYIEMIHD 160

Query: 118 QSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
           ++ RE  IP AFL+GKNG VI+  L R+N  YALIN+PVNLTYV  H INQPP
Sbjct: 161 KTDRETTIPAAFLLGKNGLVIRKTLTRMNRRYALINLPVNLTYVAPHHINQPP 213

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94469374|gb|ABF18536.1| PA domain-containing protein [Aedes aegypti]

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 122/171 (71%), Gaps = 4/171 (2%)

Query: 4   LGTTEISGENTYFEIIQPEELRYTFKIRPAKDFGSSFNG-SFSGEKIRMVPANPPWSCT- 61
           L T +I   + +FEI+ P EL YT++IRPAKDFG+SF   SF  ++ ++VPA P  +C  
Sbjct: 3   LRTQDIIAGDVFFEIVDPPELEYTYRIRPAKDFGTSFESTSFGVKEGKLVPAIPSDACEP 62

Query: 62  HPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDF--YVEMISDQS 119
              N   +KG+I L+ERGECSF+ KA+  E +G R VII++ D  SDD+  Y+EMI D++
Sbjct: 63  DFVNEKDLKGNIVLVERGECSFLTKAINVEQVGGRAVIITEVDSGSDDYDYYIEMIHDKT 122

Query: 120 KREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
            R+ +IP AFL+GKNG +I+  L +L++ YALIN+PVNLT+V  H+INQPP
Sbjct: 123 DRDTNIPAAFLLGKNGLIIRKTLAKLHLRYALINLPVNLTFVAPHEINQPP 173

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858479|ref|XP_003704729.1| PREDICTED: PRADC1-like protein-like isoform 2 [Megachile rotundata]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 117/174 (67%), Gaps = 14/174 (8%)

Query: 11  GENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIK 70
           G + +FEII P EL YT+K+RPA+DFG+ FN SF  E+I +VP +PP  C    NA  +K
Sbjct: 37  GSDVFFEIIHPPELEYTYKLRPARDFGAPFNASFLEERIPLVPTDPPHGCQIAKNAKELK 96

Query: 71  GHIALIERGECSFVHKAMIAESIGARGVIISDNDPD-----------SDDFYVEMISDQ- 118
           G IAL+ERG+CSF  K+++AE  GA+ VII+D               ++ +YV+MI D  
Sbjct: 97  GRIALVERGDCSFFAKSLMAEEAGAKAVIIADYHSSAIEESSTSPLWAEYYYVDMIRDDT 156

Query: 119 --SKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             + + ++IP  FL+GKNG++I+  L+RLN  +ALINIPVNLTY  + K++QPP
Sbjct: 157 IPTSKTVNIPAGFLLGKNGKMIRQTLQRLNQPFALINIPVNLTYASLDKLHQPP 210

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858477|ref|XP_003704728.1| PREDICTED: PRADC1-like protein-like isoform 1 [Megachile rotundata]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 117/174 (67%), Gaps = 14/174 (8%)

Query: 11  GENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIK 70
           G + +FEII P EL YT+K+RPA+DFG+ FN SF  E+I +VP +PP  C    NA  +K
Sbjct: 46  GSDVFFEIIHPPELEYTYKLRPARDFGAPFNASFLEERIPLVPTDPPHGCQIAKNAKELK 105

Query: 71  GHIALIERGECSFVHKAMIAESIGARGVIISDNDPD-----------SDDFYVEMISDQ- 118
           G IAL+ERG+CSF  K+++AE  GA+ VII+D               ++ +YV+MI D  
Sbjct: 106 GRIALVERGDCSFFAKSLMAEEAGAKAVIIADYHSSAIEESSTSPLWAEYYYVDMIRDDT 165

Query: 119 --SKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             + + ++IP  FL+GKNG++I+  L+RLN  +ALINIPVNLTY  + K++QPP
Sbjct: 166 IPTSKTVNIPAGFLLGKNGKMIRQTLQRLNQPFALINIPVNLTYASLDKLHQPP 219

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
FB|FBgn0034803	196	CG9849 [Drosophila melanogaste	0.83	0.846	0.452	2.1e-36
UNIPROTKB|Q9BSG0	188	PRADC1 "Protease-associated do	0.77	0.819	0.429	7.7e-32
MGI|MGI:1920577	188	Pradc1 "protease-associated do	0.77	0.819	0.429	7.7e-32
UNIPROTKB|F1NZN0	165	PRADC1 "Uncharacterized protei	0.785	0.951	0.408	2e-31
UNIPROTKB|A6QQW5	188	C11H2ORF7 "Uncharacterized pro	0.77	0.819	0.423	5.4e-31
UNIPROTKB|E2QRX3	188	C2orf7 "Uncharacterized protei	0.77	0.819	0.423	5.4e-31
UNIPROTKB|F1SLF5	188	PRADC1 "Uncharacterized protei	0.77	0.819	0.423	5.4e-31
WB|WBGene00020322	289	T07F12.2 [Caenorhabditis elega	0.78	0.539	0.266	1.8e-11
UNIPROTKB|H0Y498	380	EDEM3 "ER degradation-enhancin	0.45	0.236	0.361	5e-10
UNIPROTKB|E2RG02	922	EDEM3 "Uncharacterized protein	0.46	0.099	0.360	1.2e-09

FB|FBgn0034803 CG9849 [Drosophila melanogaster (taxid:7227)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 77/170 (45%), Positives = 111/170 (65%)

Query:     3 PLGTTEISGENTYFEIIQPEELRYTFKIRPAKDXXXXXXXXXXXEKIRMVPANPPWSCTH 62
             P+ T +I   + +FEI+ P EL YT+++RPAKD           E + +V  +PP +C  
Sbjct:    25 PITTQDIIAGDVFFEILSPSELEYTYRLRPAKDFGSAFSERL--EGVPLVITDPPGACQE 82

Query:    63 PTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDF--YVEMISDQSK 120
               NA  + G +ALI+RGECSF+ K + AE+ GA   II++ +P S +F  Y+EMI D S+
Sbjct:    83 IRNARDLNGGVALIDRGECSFLTKTLRAEAAGALAAIITEYNPSSPEFEHYIEMIHDNSQ 142

Query:   121 REIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             ++ +IP  FL+GKNG +I++ L+RL   +ALINIPVNLT+ P  KIN PP
Sbjct:   143 QDANIPAGFLLGKNGVIIRSTLQRLKRVHALINIPVNLTFTPPSKINHPP 192

GO:0003674 "molecular_function" evidence=ND

GO:0007521 "muscle cell fate determination" evidence=IMP

GO:0005576 "extracellular region" evidence=ISS

UNIPROTKB|Q9BSG0 PRADC1 "Protease-associated domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 67/156 (42%), Positives = 100/156 (64%)

Query:    15 YFEIIQPEELRYTFKIRPAKDXXXXXXXXXXXEKIRMVPANPPWSCTHPTNANTIKGHIA 74
             YF+++ P ++RY F   PAKD           E+I +VPA PP +C   +N   I+  IA
Sbjct:    31 YFQVLSPGDIRYIFTATPAKDFGGIFHTRY--EQIHLVPAEPPEACGELSNGFFIQDQIA 88

Query:    75 LIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN 134
             L+ERG CSF+ K  + +  G R VIISDN  D+D FYVEMI D ++R   IP  FL+G++
Sbjct:    89 LVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEMIQDSTQRTADIPALFLLGRD 148

Query:   135 GRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             G +I+ +L++  + +A+I+IPVN+T +P  ++ QPP
Sbjct:   149 GYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPP 184

GO:0005576 "extracellular region" evidence=IDA

MGI|MGI:1920577 Pradc1 "protease-associated domain containing 1" [Mus musculus (taxid:10090)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 67/156 (42%), Positives = 100/156 (64%)

Query:    15 YFEIIQPEELRYTFKIRPAKDXXXXXXXXXXXEKIRMVPANPPWSCTHPTNANTIKGHIA 74
             YF+++ P ++RY F   PAKD           E+I +VPA PP +C   +N   I+  IA
Sbjct:    31 YFQVLSPGDIRYIFTATPAKDFGGIFHTRY--EQIHLVPAEPPEACGELSNGFFIQDQIA 88

Query:    75 LIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN 134
             L+ERG CSF+ K  + +  G R VIISDN  D+D FYVEMI D ++R   IP  FL+G++
Sbjct:    89 LVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEMIQDSTQRTADIPALFLLGRD 148

Query:   135 GRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             G +I+ +L++  + +A+I+IPVN+T +P  ++ QPP
Sbjct:   149 GYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPP 184

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NZN0 PRADC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 65/159 (40%), Positives = 102/159 (64%)

Query:    12 ENTYFEIIQPEELRYTFKIRPAKDXXXXXXXXXXXEKIRMVPANPPWSCTHPTNANTIKG 71
             E  YF+++ P ++RY F   PAKD           ++I +VPA+PP +C    N   I+ 
Sbjct:     5 EYLYFQVLSPGDIRYIFTATPAKDFGGVFNTRY--DQIHLVPADPPEACGELNNGVFIQD 62

Query:    72 HIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLV 131
              IAL+ERG CSF+ K  + +  G R VII+DN  D+D FY+EMI D ++R   IP  FL+
Sbjct:    63 QIALVERGGCSFLSKTRVIQEHGGRAVIIADNAYDNDSFYIEMIQDSTRRTADIPALFLL 122

Query:   132 GKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             G++G +I+ +L++  + +A+I+IPVN+T +P +++ QPP
Sbjct:   123 GRDGYMIRRSLEQHGLPWAVISIPVNVTSIPTYEMMQPP 161

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|A6QQW5 C11H2ORF7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 66/156 (42%), Positives = 99/156 (63%)

Query:    15 YFEIIQPEELRYTFKIRPAKDXXXXXXXXXXXEKIRMVPANPPWSCTHPTNANTIKGHIA 74
             YF+++ P ++RY F   PAKD           E+I +VPA P  +C   +N   I+  IA
Sbjct:    31 YFQVLSPGDIRYIFTATPAKDFGGIFHTRY--EQIHLVPAEPSEACGELSNGFFIQDQIA 88

Query:    75 LIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN 134
             L+ERG CSF+ K  + +  G R VIISDN  D+D FYVEMI D ++R   IP  FL+G++
Sbjct:    89 LVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEMIQDSTQRTADIPALFLLGRD 148

Query:   135 GRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             G +I+ +L++  + +A+I+IPVN+T +P  ++ QPP
Sbjct:   149 GYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPP 184

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|E2QRX3 C2orf7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 66/156 (42%), Positives = 99/156 (63%)

Query:    15 YFEIIQPEELRYTFKIRPAKDXXXXXXXXXXXEKIRMVPANPPWSCTHPTNANTIKGHIA 74
             YF+++ P ++RY F   PAKD           E+I +VPA P  +C   +N   I+  IA
Sbjct:    31 YFQVLSPGDIRYIFTATPAKDFGGIFHTRY--EQIHLVPAEPSEACGELSNGFFIQDQIA 88

Query:    75 LIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN 134
             L+ERG CSF+ K  + +  G R VIISDN  D+D FYVEMI D ++R   IP  FL+G++
Sbjct:    89 LVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEMIQDSTQRTADIPALFLLGRD 148

Query:   135 GRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             G +I+ +L++  + +A+I+IPVN+T +P  ++ QPP
Sbjct:   149 GYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPP 184

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F1SLF5 PRADC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 66/156 (42%), Positives = 99/156 (63%)

Query:    15 YFEIIQPEELRYTFKIRPAKDXXXXXXXXXXXEKIRMVPANPPWSCTHPTNANTIKGHIA 74
             YF+++ P ++RY F   PAKD           E+I +VPA P  +C   +N   I+  IA
Sbjct:    31 YFQVLSPGDIRYIFTATPAKDFGGIFHTRY--EQIHLVPAEPSEACGELSNGFFIQDQIA 88

Query:    75 LIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN 134
             L+ERG CSF+ K  + +  G R VIISDN  D+D FYVEMI D ++R   IP  FL+G++
Sbjct:    89 LVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEMIQDSTQRTADIPALFLLGRD 148

Query:   135 GRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPP 170
             G +I+ +L++  + +A+I+IPVN+T +P  ++ QPP
Sbjct:   149 GYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPP 184

GO:0005576 "extracellular region" evidence=IEA

WB|WBGene00020322 T07F12.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 160 (61.4 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 44/165 (26%), Positives = 75/165 (45%)

Query:    12 ENTYFEIIQPEELRYTFKIRPA--KDXXXXXXXXXXXEKIRMVPANPPWSCTHPTNANTI 69
             +N  F + +P  L YT++++ A                 + MV A+P   C    N    
Sbjct:   117 DNMLFTVTEPYTLAYTYQMKHAFMLGVHFPDGANKTFRNLEMVLADPVHGCEALRN-EIF 175

Query:    70 KGHIALIERGECSFVHKAMIAESIGARGVIISDN---DPDSDDFYVEMISDQSKREIHIP 126
                + L+ERGECSF  KA+  E  GA  ++++D+   +     +YV MI D+S    ++P
Sbjct:   176 APSVILMERGECSFTVKALNGEKAGATVIMVTDSQNYEYSYHQYYVNMIPDESLDRANVP 235

Query:   127 VAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVP-IHKINQPP 170
               ++    GR  ++ L+        ++IPV   Y P +H   + P
Sbjct:   236 CVYVAPVTGRYFRDHLEEGGT--IKLDIPVERNYAPWVHHQKKAP 278

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H0Y498 EDEM3 "ER degradation-enhancing alpha-mannosidase-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 34/94 (36%), Positives = 52/94 (55%)

Query:    54 ANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGA-RGVIISDNDPDSDDF-- 110
             + P   C+  TN   + G IALI+RG+C F  KA   ++ GA  G++I DN+  S D   
Sbjct:   135 SKPSNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSDTAP 194

Query:   111 YVEMISD-QSKREIHIPVAFLVGKNGRVIKNALK 143
               +M  D +   +I IP+ FL  K G +I +A++
Sbjct:   195 LFQMAGDGKDTDDIKIPMLFLFSKEGSIILDAIR 228

GO:0004571 "mannosyl-oligosaccharide 1,2-alpha-mannosidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004569 "glycoprotein endo-alpha-1,2-mannosidase activity" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0006516 "glycoprotein catabolic process" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|E2RG02 EDEM3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 152 (58.6 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 35/97 (36%), Positives = 56/97 (57%)

Query:    52 VPANPPWS-CTHPTNANTIKGHIALIERGECSFVHKAMIAESIGA-RGVIISDNDPDSDD 109
             V ++ P++ C+  TN   + G IALI+RG+C F  KA   ++ GA  G++I DN+  S D
Sbjct:   667 VASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSD 726

Query:   110 F--YVEMISD-QSKREIHIPVAFLVGKNGRVIKNALK 143
                  +M  D +   +I IP+ FL  K G +I +A++
Sbjct:   727 TAPLFQMAGDGKDTDDIKIPMLFLFSKEGSIILDAIR 763

GO:0016020 "membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004571 "mannosyl-oligosaccharide 1,2-alpha-mannosidase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BSG0	PADC1_HUMAN	No assigned EC number	0.4487	0.77	0.8191	yes	N/A
Q9W1W9	PADC1_DROME	No assigned EC number	0.4764	0.83	0.8469	yes	N/A
Q9D9N8	PADC1_MOUSE	No assigned EC number	0.4487	0.77	0.8191	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	200
cd02127	118	cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-	2e-45
cd02126	126	cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as	9e-19
cd02123	153	cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a	2e-15
pfam02225	96	pfam02225, PA, PA domain	6e-14
cd02132	139	cd02132, PA_GO-like, PA_GO-like: Protease-associat	1e-13
cd04818	118	cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas	4e-13
cd00538	126	cd00538, PA, PA: Protease-associated (PA) domain	4e-13
cd02133	143	cd02133, PA_C5a_like, PA_C5a_like: Protease-associ	4e-10
cd02130	122	cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-as	2e-09
cd02129	120	cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as	2e-07
cd02122	138	cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a	6e-07
cd04813	117	cd04813, PA_1, PA_1: Protease-associated (PA) doma	2e-06
cd04816	122	cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-	3e-06
cd02125	127	cd02125, PA_VSR, PA_VSR: Protease-associated (PA)	6e-05
cd02124	129	cd02124, PA_PoS1_like, PA_PoS1_like: Protease-asso	0.003

>gnl|CDD|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)

 Score =  146 bits (370), Expect = 2e-45
 Identities = 61/120 (50%), Positives = 83/120 (69%), Gaps = 2/120 (1%)

Query: 35  DFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIG 94
           DFG+ FN  +  + + +VPA+P  +C    N + I G+IALIERG CSF+ KA+ A+  G
Sbjct: 1   DFGTIFNTRY--KHVPLVPADPLEACEELRNIHDINGNIALIERGGCSFLTKAINAQKAG 58

Query: 95  ARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINI 154
           A  VII+D + DSD++YVEMI D S R   IP AFL+GKNG +I+  L+RL + YA+INI
Sbjct: 59  ALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIINI 118

This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 118

>gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins

 Score = 77.8 bits (192), Expect = 9e-19
 Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 10/119 (8%)

Query: 32  PAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAE 91
           PA+ FG    G  +G   R+V A P  +C+  TNA  +KG IA++ERG+C FV KA   +
Sbjct: 4   PAQ-FGMDLTGDKAGVG-RVVKAKPYRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQ 61

Query: 92  SIGARGVIISDNDPDS--DD---FYVEMISD-QSKREIHIPVAFLVGKNGRVIKNALKR 144
             GA G I+ DN+  S  D    F   M  D  S  ++ IPV FL  K G  +  A+K 
Sbjct: 62  KAGAIGGIVIDNNEGSSSDTAPMF--AMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKE 118

This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126

>gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 34  KDFGSSFNGSFSGEKIR--MVPANPPWSCT----HPTNANTIKGHIALIERGECSFVHKA 87
            D  ++F     G  ++  +V A P  +C+     P N+N     I LI RG CSF  K 
Sbjct: 25  DDLPANFGPIPPGSGLKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKV 84

Query: 88  MIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNM 147
             A+  G +  I+ ++  +S+D      +DQ  + I IP  F+    G ++K        
Sbjct: 85  RNAQRAGYKAAIVYND--ESNDLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG 142

Query: 148 DYALINIPVNL 158
              + ++P+ +
Sbjct: 143 VILIPDLPLKI 153

This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 153

>gnl|CDD|216938 pfam02225, PA, PA domain

 Score = 64.5 bits (157), Expect = 6e-14
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 60  CTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQS 119
           C      + +KG I L+ RG CSFV KA  A+  GA GVII +ND           +   
Sbjct: 23  CPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVIIYNNDTGGL-----GGTVGD 77

Query: 120 KREIHIPVAFLVGKNGRVI 138
             ++ IPV F+  ++G  +
Sbjct: 78  PSDVTIPVVFISYEDGEAL 96

The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96

>gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10

 Score = 64.8 bits (158), Expect = 1e-13
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 8/99 (8%)

Query: 46  GEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDP 105
             K R V ANP   C+  T+   + G IAL+ERGEC+F  KA IAE+ GA  ++I +   
Sbjct: 37  ANKTRAVLANPLDCCSPSTS--KLSGSIALVERGECAFTEKAKIAEAGGASALLIIN--- 91

Query: 106 DSDDFYVEMI--SDQSKREIHIPVAFLVGKNGRVIKNAL 142
           D ++ Y +M+   + +   I IPV  +    G  +  +L
Sbjct: 92  DQEELY-KMVCEDNDTSLNISIPVVMIPQSAGDALNKSL 129

This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 139

>gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 60  CTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQS 119
           CT  TNA    G IALI+RG C+F  K + A++ GA  VI+++N        + M  D  
Sbjct: 30  CTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVA--GGAPITMGGDDP 87

Query: 120 KREIHIPVAFLVGKNGRVIKNAL 142
              I IP   +   +G  +K AL
Sbjct: 88  D--ITIPAVMISQADGDALKAAL 108

A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. Length = 118

>gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain

 Score = 63.3 bits (154), Expect = 4e-13
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 35  DFGSSFNGSFSGEKIRMVPANPPWSCTHPT---NANTIKGHIALIERGECSFVHKAMIAE 91
            +  S            V A P   C + T   +   +KG I L+ RG CSF  K   A+
Sbjct: 8   GYAGSALLFNPPSSPVGVVAGPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQ 67

Query: 92  SIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNAL 142
             GA+ VII  N+ D     +  +  +S  +  IP   +   +G  + + L
Sbjct: 68  KAGAKAVIIY-NNGDDPGPQMGSVGLEST-DPSIPTVGISYADGEALLSLL 116

The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126

>gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 69  IKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVA 128
           +KG IALI+RGE +FV K   A++ GA GVII +N        +          + IPV 
Sbjct: 46  VKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDG----LIPGTLG---EAVFIPVV 98

Query: 129 FLVGKNGRVIKNALK 143
           F+  ++G  +K AL+
Sbjct: 99  FISKEDGEALKAALE 113

This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143

>gnl|CDD|239045 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 70  KGHIALIERGECSFVHKAMIAESIGARGVIISDNDPD 106
            G+IALIERGEC F  K+ +A + GA   II +N P 
Sbjct: 44  AGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPA 80

This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 122

>gnl|CDD|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 10/65 (15%)

Query: 69  IKGHIALIERGECSFVHKAMIAESIGARGVIISDND---PDSDDFYVEMISDQSKREIHI 125
           +KG   ++ RG C+F  KA +A+S+GA G++I   +   P S +      S+  K  I I
Sbjct: 43  LKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGN-----RSEYEK--IDI 95

Query: 126 PVAFL 130
           PVA L
Sbjct: 96  PVALL 100

This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 120

>gnl|CDD|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 52  VPANPPWS---CTHPTNA---NTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDP 105
           V  +PP     C   T        +  IALI+RG C+F  K  +A    A  V+I  N+P
Sbjct: 36  VVPDPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIY-NNP 94

Query: 106 DSDDFYVEM 114
            + +  V+M
Sbjct: 95  GTGNETVKM 103

This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase 1). hGoliath and GRAIL both have the property of self-ubiquitination. hGoliath is expressed in leukocytes; its expression and localization is not modified in leukemia. GREUL1 may play a role in the generation of anterior ectoderm. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 138

>gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 7/95 (7%)

Query: 35  DFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIG 94
            F    N    G   ++ P +   +C+   +A  I G +AL+ RG C F+ K M A+  G
Sbjct: 9   SFSPILNPHLRGS-YKVSPTD---ACSLQEHAE-IDGKVALVLRGGCGFLDKVMWAQRRG 63

Query: 95  ARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAF 129
           A+ VI+ D++P      + M S+     + IP  F
Sbjct: 64  AKAVIVGDDEPGRG--LITMFSNGDTDNVTIPAMF 96

A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuolar sorting receptors such as Pisum sativum BP-80, vi) prostate-specific membrane antigen (PSMA), vii) yeast aminopeptidase Y viii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, ix) various subtilisin-like proteases such as Cucumisin from the juice of melon fruits, and x) human TfR (transferrin receptor) 1 and human TfR2. The proteins listed above belong to other subgroups; relatively little is known about proteins in this subgroup. Length = 117

>gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 68  TIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPD 106
            +KG I L++RG C F  K  +A + GA  VI+ +N   
Sbjct: 41  DVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDG 79

This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 122

>gnl|CDD|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 73  IALIERGECSFVHKAMIAESIGARGVIISDN--------DPDSDDFYVEMISDQSKREIH 124
           I L++RG C F  KA  A+  GA  V+++DN        D   +    + I       I 
Sbjct: 45  ILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEK-----IT 99

Query: 125 IPVAFLVGKNGRVIKNAL 142
           IP A +    G  +K A+
Sbjct: 100 IPSALITKAFGEKLKKAI 117

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 127

>gnl|CDD|239039 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-associated (PA) domain PoS1-like

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 71  GHIALIERGECSFVHKAMIAESIGARGVIISDNDPDS 107
           G+I L+ RG C+F  KA  A + GA+ V+I +N    
Sbjct: 56  GYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGP 92

This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 129

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG3920|consensus	193		100.0
cd02127	118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	99.94
cd02126	126	PA_EDEM3_like PA_EDEM3_like: protease associated d	99.93
cd02132	139	PA_GO-like PA_GO-like: Protease-associated domain	99.9
cd04813	117	PA_1 PA_1: Protease-associated (PA) domain subgrou	99.88
cd02125	127	PA_VSR PA_VSR: Protease-associated (PA) domain-con	99.88
cd02123	153	PA_C_RZF_like PA_C-RZF_ like: Protease-associated	99.88
cd02122	138	PA_GRAIL_like PA _GRAIL_like: Protease-associated	99.87
cd02129	120	PA_hSPPL_like PA_hSPPL_like: Protease-associated d	99.87
cd04818	118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	99.85
cd04816	122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	99.8
cd02130	122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	99.77
cd02124	129	PA_PoS1_like PA_PoS1_like: Protease-associated (PA	99.71
cd04817	139	PA_VapT_like PA_VapT_like: Protease-associated dom	99.69
PF02225	101	PA: PA domain; InterPro: IPR003137 The PA (Proteas	99.68
cd00538	126	PA PA: Protease-associated (PA) domain. The PA dom	99.65
cd02133	143	PA_C5a_like PA_C5a_like: Protease-associated domai	99.62
KOG4628|consensus	348		99.61
cd02120	126	PA_subtilisin_like PA_subtilisin_like: Protease-as	99.59
cd04819	127	PA_2 PA_2: Protease-associated (PA) domain subgrou	99.46
KOG2442|consensus	541		99.46
cd04815	134	PA_M28_2 PA_M28_2: Protease-associated (PA) domain	99.3
cd02128	183	PA_TfR PA_TfR: Protease-associated domain containi	99.16
cd02121	220	PA_GCPII_like PA_GCPII_like: Protease-associated d	98.84
cd04814	142	PA_M28_1 PA_M28_1: Protease-associated (PA) domain	98.75
cd04822	151	PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do	98.71
cd04820	137	PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do	98.64
cd02131	153	PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso	98.61
cd04821	157	PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do	97.28
KOG3920|consensus	193		93.81
KOG2195|consensus	702		84.83
COG4882	486	Predicted aminopeptidase, Iap family [General func	81.57

>KOG3920|consensus

Probab=100.00  E-value=2.1e-35  Score=227.50  Aligned_cols=162  Identities=41%  Similarity=0.716  Sum_probs=151.2

Q ss_pred             ccceeEEEeCCCccceeeeccccCCcCCCCCCCcccceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHH
Q psy12056         11 GENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIA   90 (200)
Q Consensus        11 ~~~~~~~V~~p~~l~~~~~~~~a~dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~A   90 (200)
                      .|+++|+|++|.+++|+|+..+|+|||..|+.++.  +.+||.++|..||+.+.|.....|.|+|++||+|||..|.+++
T Consensus        30 qD~~~F~vlsP~~l~Yty~~~pAkdfG~~F~~r~e--~~~lV~adPp~aC~elrN~~f~~d~vaL~eRGeCSFl~Ktl~~  107 (193)
T KOG3920|consen   30 QDNMLFTVLSPYTLAYTYQMKPAKDFGVHFPDRFE--NLELVLADPPHACEELRNEIFAPDSVALMERGECSFLVKTLNG  107 (193)
T ss_pred             cceEEEEecCcccEEEEEEecchhhhccccchhhc--CcceeecCChhHHHHHhhcccCCCcEEEEecCCceeeehhhhh
Confidence            47789999999999999999999999999999886  7899999999999999888888999999999999999999999


Q ss_pred             HHcCCcEEEEEeCCCCCCcc--eeeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEEEEEeecceeeccccCCC
Q psy12056         91 ESIGARGVIISDNDPDSDDF--YVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQ  168 (200)
Q Consensus        91 q~aGA~avIi~n~~~~~~~~--~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~I~~~~~~~~~~~~~~~~  168 (200)
                      +++||.++||.++.....+.  ++.|..|++..+..||++++-..+|-.++..|+.-..+.|.|++|||.|+.|..+..|
T Consensus       108 e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPVn~t~~P~~~~~~  187 (193)
T KOG3920|consen  108 EKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPVNRTYAPWVHHQK  187 (193)
T ss_pred             hhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhHHHhCCccEEEecccccccCCchhhcC
Confidence            99999999999887665554  6789999888899999999999999999999999999999999999999999989999


Q ss_pred             CCCccc
Q psy12056        169 PPLKMD  174 (200)
Q Consensus       169 ~~~~~w  174 (200)
                      +||+.|
T Consensus       188 pPW~~W  193 (193)
T KOG3920|consen  188 PPWEIW  193 (193)
T ss_pred             CCCcCC
Confidence            999998

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)

Probab=99.94  E-value=3.6e-26  Score=172.20  Aligned_cols=117  Identities=51%  Similarity=0.891  Sum_probs=101.8

Q ss_pred             CcCCCCCCCcccceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeee
Q psy12056         35 DFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEM  114 (200)
Q Consensus        35 dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m  114 (200)
                      |||..++.+..  .++|+.++|.++|++..+..+++|||+|++||+|+|.+|+++||++||+||||+|+..+....++.|
T Consensus         1 ~~~~~~~~~~~--~~~lv~~~p~~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m   78 (118)
T cd02127           1 DFGTIFNTRYK--HVPLVPADPLEACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEM   78 (118)
T ss_pred             CCCcccccccc--ceEEEECCccccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEe
Confidence            59999988775  7899999999999988777789999999999999999999999999999999999875433335678


Q ss_pred             ccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEEEE
Q psy12056        115 ISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALIN  153 (200)
Q Consensus       115 ~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~I~  153 (200)
                      .+++....++||+++|++++|+.|++.++++..++|.+.
T Consensus        79 ~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~  117 (118)
T cd02127          79 IQDDSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN  117 (118)
T ss_pred             cCCCCCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence            776545678999999999999999999999999988653

This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins

Probab=99.93  E-value=8.1e-25  Score=166.66  Aligned_cols=120  Identities=37%  Similarity=0.561  Sum_probs=100.2

Q ss_pred             ccccCCcCCCCCCCcccceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCC-
Q psy12056         30 IRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSD-  108 (200)
Q Consensus        30 ~~~a~dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~-  108 (200)
                      .++|+ ||.+++.... ..++|+.++|.++|++..++.+++|||+|++||+|+|.+|+++||++||+|+||+|+.++.. 
T Consensus         2 ~~pa~-FG~~~~~~~~-~~g~l~~~~p~~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~   79 (126)
T cd02126           2 AGPAQ-FGMDLTGDKA-GVGRVVKAKPYRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSS   79 (126)
T ss_pred             CCCcc-cCCcCCCCCC-ceEEEEeCCchhcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence            46888 9999986543 46799999999999998877789999999999999999999999999999999998776431 


Q ss_pred             --cceeeeccCCC-CCccceeEEEeCHHHHHHHHHHHhcCCCeEEE
Q psy12056        109 --DFYVEMISDQS-KREIHIPVAFLVGKNGRVIKNALKRLNMDYAL  151 (200)
Q Consensus       109 --~~~~~m~~~~~-~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~  151 (200)
                        ..++.|.+++. ...+.||+++|++.+|++|+++++++..+++.
T Consensus        80 ~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~  125 (126)
T cd02126          80 DTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVL  125 (126)
T ss_pred             cccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEe
Confidence              22456776542 23689999999999999999999998887643

This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr

>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10

Probab=99.90  E-value=2.7e-22  Score=155.23  Aligned_cols=119  Identities=31%  Similarity=0.487  Sum_probs=98.5

Q ss_pred             cceeeeccccCCcCCCCCCCcc-cceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q psy12056         24 LRYTFKIRPAKDFGSSFNGSFS-GEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISD  102 (200)
Q Consensus        24 l~~~~~~~~a~dFG~~~~~~~~-~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n  102 (200)
                      ....|.+.+|. ||..+++... +..++++.+++.++|++..+  +++||||||+||+|+|.+|++|||++||+++||||
T Consensus        15 ~~~~~~~~~a~-FG~~~p~~~~~~~~~~lv~~~~~~gC~~~~~--~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n   91 (139)
T cd02132          15 EGDELVGVTAR-FGASLPSKEDNANKTRAVLANPLDCCSPSTS--KLSGSIALVERGECAFTEKAKIAEAGGASALLIIN   91 (139)
T ss_pred             cccEEEeeccc-cCCCCCCcccCccEEEEEECCcccccCCCCc--ccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEE
Confidence            45689999999 9998765322 25789999999999998764  78999999999999999999999999999999999


Q ss_pred             CCCCCCcceeeeccC--CCCCccceeEEEeCHHHHHHHHHHHhcCCCeE
Q psy12056        103 NDPDSDDFYVEMISD--QSKREIHIPVAFLVGKNGRVIKNALKRLNMDY  149 (200)
Q Consensus       103 ~~~~~~~~~~~m~~~--~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~  149 (200)
                      +.+.    ++.|...  +......||+++|++++|+.|+++++++.+++
T Consensus        92 ~~~~----~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vt  136 (139)
T cd02132          92 DQEE----LYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKKVE  136 (139)
T ss_pred             CCCc----ccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCCcEE
Confidence            7743    2345432  22346799999999999999999999988765

This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1

Probab=99.88  E-value=4e-22  Score=149.94  Aligned_cols=107  Identities=28%  Similarity=0.506  Sum_probs=88.0

Q ss_pred             ccccCCcCCCCCCCcccceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCc
Q psy12056         30 IRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDD  109 (200)
Q Consensus        30 ~~~a~dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~  109 (200)
                      .+.|+ ||++|+....+  ..+  ++|.++|++. +..+++||||||+||+|+|.+|+++||++||++|||+|+..+.  
T Consensus         5 ~~~~~-~~~~~~~~~~~--~~~--~~p~~gC~~~-~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~--   76 (117)
T cd04813           5 GRYAS-FSPILNPHLRG--SYK--VSPTDACSLQ-EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGR--   76 (117)
T ss_pred             ccccc-cCCccCccccc--ccc--CCCCCCCCCC-CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcc--
Confidence            35677 99999887752  222  7788999987 4468999999999999999999999999999999999987642  


Q ss_pred             ceeeeccCCCCCccceeEEEeCHHHHHHHHHHHhc
Q psy12056        110 FYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKR  144 (200)
Q Consensus       110 ~~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~  144 (200)
                      .++.|.+++....+.||+++|++++|+.|+.++.+
T Consensus        77 ~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~~  111 (117)
T cd04813          77 GLITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLPK  111 (117)
T ss_pred             cceecccCCCCCCcEEEEEEEcHHHHHHHHHhccc
Confidence            24467655545678999999999999999988765

A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid

>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)

Probab=99.88  E-value=7.4e-22  Score=150.53  Aligned_cols=110  Identities=25%  Similarity=0.385  Sum_probs=87.9

Q ss_pred             CcCC-CCCCCcccceEEEEeC-CCCCCCCCCCC---CC----CccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q psy12056         35 DFGS-SFNGSFSGEKIRMVPA-NPPWSCTHPTN---AN----TIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDP  105 (200)
Q Consensus        35 dFG~-~~~~~~~~~~~~Lv~~-~~~~aC~~~~~---~~----~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~  105 (200)
                      +||. +|+.+..   +.|++. ++.++|+++.+   +.    ...+||||++||+|+|.+|+++||++||+++||+|+.+
T Consensus         1 ~FG~~~yg~~~~---G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~   77 (127)
T cd02125           1 NFGLPQYGGTLT---GVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVD   77 (127)
T ss_pred             CCCCCCcCCeeE---EEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCC
Confidence            3999 5888774   466665 67899998753   21    37789999999999999999999999999999999875


Q ss_pred             CCCcceeeeccC------CCCCccceeEEEeCHHHHHHHHHHHhcCCCeEE
Q psy12056        106 DSDDFYVEMISD------QSKREIHIPVAFLVGKNGRVIKNALKRLNMDYA  150 (200)
Q Consensus       106 ~~~~~~~~m~~~------~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a  150 (200)
                      +.   ++.|...      +....+.||+++|++++|+.|++.++++..++.
T Consensus        78 ~~---~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v  125 (127)
T cd02125          78 EP---LLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGEMVVI  125 (127)
T ss_pred             Cc---cccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEE
Confidence            32   3456431      123467899999999999999999999988764

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic

>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like

Probab=99.88  E-value=1.3e-21  Score=153.74  Aligned_cols=116  Identities=28%  Similarity=0.426  Sum_probs=96.3

Q ss_pred             eeeeccccCCcCCCCCCCcccceEEEEeCCCCCCCCCCCC----CCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q psy12056         26 YTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTN----ANTIKGHIALIERGECSFVHKAMIAESIGARGVIIS  101 (200)
Q Consensus        26 ~~~~~~~a~dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~----~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~  101 (200)
                      ..|...+|. ||.+.....  +.+.|+.+++.+||++..+    ..++.|||||++||+|+|.+|+++||++||+|+||+
T Consensus        22 ~~~~~~~A~-FG~~~~~~~--~~g~lv~~~p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~   98 (153)
T cd02123          22 DEFDDLPAN-FGPIPPGSG--LKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVY   98 (153)
T ss_pred             ceEeeeccc-CCCCCCCCc--eEEEEEeCCccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEE
Confidence            568888998 998654322  3678999999999998764    257899999999999999999999999999999999


Q ss_pred             eCCCCCCcceeeeccCCCC-CccceeEEEeCHHHHHHHHHHHhcCCC
Q psy12056        102 DNDPDSDDFYVEMISDQSK-REIHIPVAFLVGKNGRVIKNALKRLNM  147 (200)
Q Consensus       102 n~~~~~~~~~~~m~~~~~~-~~~~IP~v~Is~~dG~~L~~~l~~~~~  147 (200)
                      |+..+.   .+.|..++.. ..+.||+++|++++|+.|++++++++.
T Consensus        99 n~~~~~---~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~  142 (153)
T cd02123          99 NDESND---LISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG  142 (153)
T ss_pred             ECCCCc---ceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence            987532   3466665432 478999999999999999999998776

This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce

>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like

Probab=99.87  E-value=4.3e-21  Score=148.24  Aligned_cols=113  Identities=24%  Similarity=0.277  Sum_probs=89.9

Q ss_pred             ccCCcCCCCCCCcccceEEEEe---CCCCCCCCCCCC---CCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q psy12056         32 PAKDFGSSFNGSFSGEKIRMVP---ANPPWSCTHPTN---ANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDP  105 (200)
Q Consensus        32 ~a~dFG~~~~~~~~~~~~~Lv~---~~~~~aC~~~~~---~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~  105 (200)
                      +|+ ||.+.+....  .+.|+.   +.+.+||++..+   ..+++|+||||+||+|+|.+|+++||++||++|||||+.+
T Consensus        19 ~a~-fg~~~~~~~~--~G~l~~~~~~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~   95 (138)
T cd02122          19 SGR-YGEHSPKEEA--KGLVVVPDPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPG   95 (138)
T ss_pred             ccc-cCCCCCCCcc--EEEEecCCCCCCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence            577 9986654432  556654   445799998765   3578999999999999999999999999999999999886


Q ss_pred             CCCcceeeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEE
Q psy12056        106 DSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYAL  151 (200)
Q Consensus       106 ~~~~~~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~  151 (200)
                      . ....+.|..++   ...||+++|++.+|+.|+++++++.+++..
T Consensus        96 ~-~~~~~~m~~~~---~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~  137 (138)
T cd02122          96 T-GNETVKMSHPG---TGDIVAIMITNPKGMEILELLERGISVTMV  137 (138)
T ss_pred             C-CCceeeccCCC---CCcceEEEEcHHHHHHHHHHHHcCCcEEEe
Confidence            2 12245676543   247899999999999999999999887643

This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase

>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like

Probab=99.87  E-value=1.8e-21  Score=146.65  Aligned_cols=95  Identities=24%  Similarity=0.376  Sum_probs=78.4

Q ss_pred             ceEEEEeCCCCCCCCCCCC-CCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeecc-CCCCCccc
Q psy12056         47 EKIRMVPANPPWSCTHPTN-ANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMIS-DQSKREIH  124 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~~-~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~-~~~~~~~~  124 (200)
                      ...+|+..+|..+|++.+. ..+++|||+|++||+|+|.+|+++||++||+||||+|+....     ...+ .+....++
T Consensus        20 ~~~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~-----~~~~~~~~~~~v~   94 (120)
T cd02129          20 TLLPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV-----PPSGNRSEYEKID   94 (120)
T ss_pred             cceeeecCCCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC-----CCCCCCCCCcCCc
Confidence            3678999999999998764 457999999999999999999999999999999999987521     1111 11125678


Q ss_pred             eeEEEeCHHHHHHHHHHHhcCC
Q psy12056        125 IPVAFLVGKNGRVIKNALKRLN  146 (200)
Q Consensus       125 IP~v~Is~~dG~~L~~~l~~~~  146 (200)
                      ||+++|++++|+.|++.+.++-
T Consensus        95 IP~v~Is~~dG~~i~~~l~~~~  116 (120)
T cd02129          95 IPVALLSYKDMLDIQQTFGDSV  116 (120)
T ss_pred             ccEEEEeHHHHHHHHHHhccCc
Confidence            9999999999999999998643

This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1

Probab=99.85  E-value=2.2e-20  Score=140.27  Aligned_cols=114  Identities=31%  Similarity=0.433  Sum_probs=93.1

Q ss_pred             ccCCcCCCCCCC-cccceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q psy12056         32 PAKDFGSSFNGS-FSGEKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDF  110 (200)
Q Consensus        32 ~a~dFG~~~~~~-~~~~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~  110 (200)
                      +|+ ||..+... ...+.++|+.+++.++|++.....+++||||||+||+|+|.+|+.+|+++||+|+||+|+..+.  .
T Consensus         2 ~a~-fg~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~--~   78 (118)
T cd04818           2 SAG-FGPALTNVTADVVLAGAAPASNTDGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGG--A   78 (118)
T ss_pred             Ccc-cCCcCccccccceeEEEecCCcccccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCC--c
Confidence            577 99977642 1125789999999999999876567999999999999999999999999999999999987642  1


Q ss_pred             eeeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEE
Q psy12056        111 YVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYA  150 (200)
Q Consensus       111 ~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a  150 (200)
                      .+.|.++.  ....||+++|++++|+.|+++++++.+++.
T Consensus        79 ~~~~~~~~--~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v  116 (118)
T cd04818          79 PITMGGDD--PDITIPAVMISQADGDALKAALAAGGTVTV  116 (118)
T ss_pred             ceeccCCC--CCCEEeEEEecHHHHHHHHHHHhcCCcEEE
Confidence            23454432  346799999999999999999998887654

A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)

Probab=99.80  E-value=1.7e-18  Score=130.83  Aligned_cols=101  Identities=24%  Similarity=0.443  Sum_probs=80.2

Q ss_pred             ceEEEEeCCC--CCCCCCCC-CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCcc
Q psy12056         47 EKIRMVPANP--PWSCTHPT-NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREI  123 (200)
Q Consensus        47 ~~~~Lv~~~~--~~aC~~~~-~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~  123 (200)
                      ++++|++.++  .++|++.. +..+++||||||+||+|+|.+|+++|+++||+|+||+|+..+.... ..+...  ....
T Consensus        17 i~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~-~~~~~~--~~~~   93 (122)
T cd04816          17 VTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTA-GTLGAP--NIDL   93 (122)
T ss_pred             cEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcccc-ccccCC--CCCC
Confidence            5789998764  58999865 3457999999999999999999999999999999999987532110 011111  1456


Q ss_pred             ceeEEEeCHHHHHHHHHHHhcCCCeEE
Q psy12056        124 HIPVAFLVGKNGRVIKNALKRLNMDYA  150 (200)
Q Consensus       124 ~IP~v~Is~~dG~~L~~~l~~~~~~~a  150 (200)
                      .||+++|++++|++|+++++++.++++
T Consensus        94 ~iP~~~Is~~~G~~l~~~l~~g~~v~~  120 (122)
T cd04816          94 KVPVGVITKAAGAALRRRLGAGETLEL  120 (122)
T ss_pred             eeeEEEEcHHHHHHHHHHHcCCCEEEE
Confidence            799999999999999999999887654

This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)

Probab=99.77  E-value=5.7e-18  Score=127.94  Aligned_cols=99  Identities=27%  Similarity=0.409  Sum_probs=79.5

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCcccee
Q psy12056         47 EKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIP  126 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP  126 (200)
                      ..++|++. +.++|++.+.+.+++|||||++||+|+|.+|+++|+++||+++||+|+.....  ......  ......||
T Consensus        22 ~~g~lv~~-~~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~--~~~~~~--~~~~~~Ip   96 (122)
T cd02130          22 VTGPLVVV-PNLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGG--LSGTLG--EPSGPYVP   96 (122)
T ss_pred             cEEEEEEe-CCCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcc--cccccC--CCCCCEee
Confidence            36788886 47899987665679999999999999999999999999999999999873111  111111  12356799


Q ss_pred             EEEeCHHHHHHHHHHHhcCCCeEE
Q psy12056        127 VAFLVGKNGRVIKNALKRLNMDYA  150 (200)
Q Consensus       127 ~v~Is~~dG~~L~~~l~~~~~~~a  150 (200)
                      +++|++++|+.|++.++++++++.
T Consensus        97 ~v~Is~~~G~~L~~~l~~g~~v~~  120 (122)
T cd02130          97 TVGISQEDGKALVAALANGGEVSA  120 (122)
T ss_pred             EEEecHHHHHHHHHHHhcCCcEEE
Confidence            999999999999999999988764

This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab

>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like

Probab=99.71  E-value=1.3e-16  Score=121.94  Aligned_cols=89  Identities=24%  Similarity=0.321  Sum_probs=70.2

Q ss_pred             CCCCCCCCCCC-CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccceeEEEeCH
Q psy12056         54 ANPPWSCTHPT-NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVG  132 (200)
Q Consensus        54 ~~~~~aC~~~~-~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP~v~Is~  132 (200)
                      +.+.+||+++. +..+++||||||+||+|+|.+|++||+++||++|||||+.++.   + .+...   ....+|.+++ +
T Consensus        38 ~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~---~-~~~~~---~~~~~~~~~~-~  109 (129)
T cd02124          38 SVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGP---T-DQVGS---DADSIIAAVT-P  109 (129)
T ss_pred             CCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCc---c-cccCC---CCcceeeEEe-H
Confidence            35779999874 3357899999999999999999999999999999999987542   1 22221   2334666666 9


Q ss_pred             HHHHHHHHHHhcCCCeEE
Q psy12056        133 KNGRVIKNALKRLNMDYA  150 (200)
Q Consensus       133 ~dG~~L~~~l~~~~~~~a  150 (200)
                      ++|++|++.++++..+++
T Consensus       110 ~~G~~l~~~l~~G~~vtv  127 (129)
T cd02124         110 EDGEAWIDALAAGSNVTV  127 (129)
T ss_pred             HHHHHHHHHHhcCCeEEE
Confidence            999999999999877664

This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530

Probab=99.69  E-value=4e-16  Score=120.52  Aligned_cols=96  Identities=20%  Similarity=0.221  Sum_probs=72.0

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCC-----HHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCC
Q psy12056         47 EKIRMVPANPPWSCTHPTNANTIKGHIALIERGECS-----FVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKR  121 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Cs-----f~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~  121 (200)
                      ..++|+.... .+|+..  ..+++|||+|++||+|+     |.+|+++|+++||+|+||||+...... +..+..+. ..
T Consensus        36 ~tg~lv~~g~-~g~d~~--~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~-~~~~lg~~-~~  110 (139)
T cd04817          36 ATGSLYYCGT-SGGSYI--CGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGL-QNPFLVDT-NN  110 (139)
T ss_pred             ceEEEEEccC-CCcccc--CCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCc-ccccccCC-CC
Confidence            4678888763 447322  34789999999999999     999999999999999999999732111 11122221 12


Q ss_pred             ccceeEEEeCHHHHHHHHHHHhcCCC
Q psy12056        122 EIHIPVAFLVGKNGRVIKNALKRLNM  147 (200)
Q Consensus       122 ~~~IP~v~Is~~dG~~L~~~l~~~~~  147 (200)
                      ...||+++|++++|++|++.+.++..
T Consensus       111 ~~~IP~v~is~~dG~~L~~~l~~~~t  136 (139)
T cd04817         111 DTTIPSVSVDRADGQALLAALGQSTT  136 (139)
T ss_pred             CceEeEEEeeHHHHHHHHHHhcCCCe
Confidence            57899999999999999999976543

This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []

Probab=99.68  E-value=6.7e-17  Score=117.10  Aligned_cols=92  Identities=35%  Similarity=0.586  Sum_probs=65.2

Q ss_pred             ceEEEEeCCCC---CCCCC-CCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCc
Q psy12056         47 EKIRMVPANPP---WSCTH-PTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKRE  122 (200)
Q Consensus        47 ~~~~Lv~~~~~---~aC~~-~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~  122 (200)
                      ..++||.....   ..|.+ ..+..+++||||||+||.|+|.+|+++||++||+|+||+|.......    +........
T Consensus         6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~----~~~~~~~~~   81 (101)
T PF02225_consen    6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGS----MIDSEDPDP   81 (101)
T ss_dssp             EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTT----TTCEBTTTS
T ss_pred             EEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccC----cccccCCCC
Confidence            36788843322   22332 33567899999999999999999999999999999999992221111    111112356


Q ss_pred             cceeEEEeCHHHHHHHHHHH
Q psy12056        123 IHIPVAFLVGKNGRVIKNAL  142 (200)
Q Consensus       123 ~~IP~v~Is~~dG~~L~~~l  142 (200)
                      ..||+++|++++|++|++|+
T Consensus        82 ~~iP~v~I~~~~g~~L~~~i  101 (101)
T PF02225_consen   82 IDIPVVFISYEDGEALLAYI  101 (101)
T ss_dssp             TBSEEEEE-HHHHHHHHHHH
T ss_pred             cEEEEEEeCHHHHhhhhccC
Confidence            78999999999999999986

The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....

>cd00538 PA PA: Protease-associated (PA) domain

Probab=99.65  E-value=1.3e-15  Score=114.27  Aligned_cols=93  Identities=29%  Similarity=0.405  Sum_probs=72.7

Q ss_pred             CCCCCCCCCC---CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCC-CCCccceeEEEe
Q psy12056         55 NPPWSCTHPT---NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQ-SKREIHIPVAFL  130 (200)
Q Consensus        55 ~~~~aC~~~~---~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~-~~~~~~IP~v~I  130 (200)
                      .+..+|.+..   +..+++||||||+||+|+|.+|+++|+++||+|+||+|+......   .+...+ ......||+++|
T Consensus        28 ~~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~---~~~~~~~~~~~~~iP~~~i  104 (126)
T cd00538          28 GPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGP---QMGSVGLESTDPSIPTVGI  104 (126)
T ss_pred             cceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCccc---ccccccCCCCCCcEeEEEe
Confidence            3567787764   356799999999999999999999999999999999998753211   111111 023567999999


Q ss_pred             CHHHHHHHHHHHhcCCCeEE
Q psy12056        131 VGKNGRVIKNALKRLNMDYA  150 (200)
Q Consensus       131 s~~dG~~L~~~l~~~~~~~a  150 (200)
                      +.++|++|+++++++.+++.
T Consensus       105 s~~~g~~l~~~~~~~~~v~~  124 (126)
T cd00538         105 SYADGEALLSLLEAGKTVTV  124 (126)
T ss_pred             CHHHHHHHHHHHhcCCceEE
Confidence            99999999999999877654

The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g

>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase

Probab=99.62  E-value=8.9e-15  Score=113.42  Aligned_cols=94  Identities=33%  Similarity=0.485  Sum_probs=72.2

Q ss_pred             ceEEEEeCCCCCCCCCCC-CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccce
Q psy12056         47 EKIRMVPANPPWSCTHPT-NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHI  125 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~-~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~I  125 (200)
                      ..++|++..   .|.+.+ ...+++||||||+||+|+|.+|+++|+++||+|+||+|+..+.    ..+..+   ....|
T Consensus        26 ~~~~lv~~g---~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~----~~~~~~---~~~~i   95 (143)
T cd02133          26 KTYELVDAG---LGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL----IPGTLG---EAVFI   95 (143)
T ss_pred             cEEEEEEcc---CCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc----ccccCC---CCCeE
Confidence            368899863   233322 2457999999999999999999999999999999999987542    122221   23569


Q ss_pred             eEEEeCHHHHHHHHHHHhcCCCeEEEEEE
Q psy12056        126 PVAFLVGKNGRVIKNALKRLNMDYALINI  154 (200)
Q Consensus       126 P~v~Is~~dG~~L~~~l~~~~~~~a~I~~  154 (200)
                      |+++|++++|++|++++++    .++|.+
T Consensus        96 P~v~Is~~dG~~L~~~l~~----~~~i~~  120 (143)
T cd02133          96 PVVFISKEDGEALKAALES----SKKLTF  120 (143)
T ss_pred             eEEEecHHHHHHHHHHHhC----CCeEEE
Confidence            9999999999999999987    444554

This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin

>KOG4628|consensus

Probab=99.61  E-value=8.5e-15  Score=127.35  Aligned_cols=136  Identities=26%  Similarity=0.370  Sum_probs=103.7

Q ss_pred             CccceeeeccccCCcCCCCCCCcccceEEEEeCCCCCCCCCCCC----CCCccceEEEEEeCCCCHHHHHHHHHHcCCcE
Q psy12056         22 EELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTN----ANTIKGHIALIERGECSFVHKAMIAESIGARG   97 (200)
Q Consensus        22 ~~l~~~~~~~~a~dFG~~~~~~~~~~~~~Lv~~~~~~aC~~~~~----~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~a   97 (200)
                      .+...+|.+.+|. ||+....+..  .+-++.++|.+||++..+    .......++|++||+|+|..|+++||++|++|
T Consensus        30 ~n~S~sf~d~~a~-f~~s~~~e~~--~G~l~~~ep~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfka  106 (348)
T KOG4628|consen   30 RNTSLSFADLPAL-FGPSLPSEGN--LGVLVVAEPLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKA  106 (348)
T ss_pred             ccccccccCCccc-cCCccccccc--eeeeecCCCccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCce
Confidence            4445588999998 9998765543  678999999999999865    23456799999999999999999999999999


Q ss_pred             EEEEeCCCCCCcceeeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEEEEEeecceeeccccCCCCCCccc
Q psy12056         98 VIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINIPVNLTYVPIHKINQPPLKMD  174 (200)
Q Consensus        98 vIi~n~~~~~~~~~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~I~~~~~~~~~~~~~~~~~~~~~w  174 (200)
                      +|+||+....  ..+.|..+.  .++.|++++++...|+.|.+|..........  +        +..++.++|..-
T Consensus       107 aIVynn~~~~--~lv~~~~~~--~~v~i~~~~vs~~~ge~l~~~~~~~~~~~~~--~--------~~~~~~~~ws~~  169 (348)
T KOG4628|consen  107 AIVYNNVGSE--DLVAMASNP--SKVDIHIVFVSVFSGELLSSYAGRTEFECLL--I--------PLGFDTSPWSIL  169 (348)
T ss_pred             EEEecCCCCc--hheeeccCC--ccceeEEEEEeeehHHHHHHhhcccceeeee--c--------cccccCCcchhh
Confidence            9999976432  245565443  5789999999999999999997664433221  1        334566666653

>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases

Probab=99.59  E-value=8.3e-15  Score=110.54  Aligned_cols=88  Identities=22%  Similarity=0.354  Sum_probs=72.6

Q ss_pred             CCCCCCCC-CCCCccceEEEEEeCCC-CHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccceeEEEeCHHH
Q psy12056         57 PWSCTHPT-NANTIKGHIALIERGEC-SFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKN  134 (200)
Q Consensus        57 ~~aC~~~~-~~~~v~gkIvLv~RG~C-sf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP~v~Is~~d  134 (200)
                      ...|++.. +..+++||||||+||.| +|.+|+.+++++||.|+|++++..+..    .+..    ....||+++|+.++
T Consensus        37 ~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~----~~~~----~~~~iP~v~I~~~~  108 (126)
T cd02120          37 ASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL----DVVA----DAHVLPAVHVDYED  108 (126)
T ss_pred             cccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc----eecc----cccccceEEECHHH
Confidence            46898765 34679999999999999 999999999999999999998875421    1121    23579999999999


Q ss_pred             HHHHHHHHhcCCCeEEEE
Q psy12056        135 GRVIKNALKRLNMDYALI  152 (200)
Q Consensus       135 G~~L~~~l~~~~~~~a~I  152 (200)
                      |+.|++|++++..++++|
T Consensus       109 g~~l~~y~~~~~~~~~~i  126 (126)
T cd02120         109 GTAILSYINSTSNPTATI  126 (126)
T ss_pred             HHHHHHHHHcCCCcceeC
Confidence            999999999988887653

This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu

>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2

Probab=99.46  E-value=1.1e-12  Score=99.99  Aligned_cols=100  Identities=18%  Similarity=0.181  Sum_probs=72.9

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCC--CHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccc
Q psy12056         47 EKIRMVPANPPWSCTHPTNANTIKGHIALIERGEC--SFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIH  124 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~C--sf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~  124 (200)
                      ..++++++.  .+........+++|||||++||.|  +|..|+.+|+++||+|+|++|+..+..... .......+....
T Consensus        23 ~~~~lV~~g--~G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~-~~~~~~~~~~~~   99 (127)
T cd04819          23 AKGEPVDAG--YGLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPAT-GDEGTEDGPPSP   99 (127)
T ss_pred             eeEEEEEeC--CCCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccc-ccccccCCCCCC
Confidence            468999864  332111123579999999999999  999999999999999999998775432100 111111123467


Q ss_pred             eeEEEeCHHHHHHHHHHHhcCCCeE
Q psy12056        125 IPVAFLVGKNGRVIKNALKRLNMDY  149 (200)
Q Consensus       125 IP~v~Is~~dG~~L~~~l~~~~~~~  149 (200)
                      ||++.|+.+||++|++.++.+..+.
T Consensus       100 IP~v~Is~edg~~L~~~l~~g~~~~  124 (127)
T cd04819         100 IPAASVSGEDGLRLARVAERNDTLV  124 (127)
T ss_pred             CCEEEEeHHHHHHHHHHHhcCCceE
Confidence            9999999999999999999876553

A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola

>KOG2442|consensus

Probab=99.46  E-value=1.9e-13  Score=122.04  Aligned_cols=120  Identities=25%  Similarity=0.433  Sum_probs=91.1

Q ss_pred             eeccccCCcCCCCCCCccc-ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCC
Q psy12056         28 FKIRPAKDFGSSFNGSFSG-EKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPD  106 (200)
Q Consensus        28 ~~~~~a~dFG~~~~~~~~~-~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~  106 (200)
                      +....++ ||....+...+ ...++..++|.+-|++..+  .++||++++.||+|+|.+|+++||++||.|++|+|+..+
T Consensus        55 ~a~~~~~-~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~--kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d  131 (541)
T KOG2442|consen   55 FAGMLAR-FGITLPSKCKAADIPHLAQVDPLDSCSTLQS--KLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKD  131 (541)
T ss_pred             hhhhhhh-cCCcCCCCccccccchhhhcCCccccCCCCc--cccceeEEEecccceeehhhhhhhhcCceEEEEEcCchh
Confidence            4455566 88854432211 2334556789999998754  579999999999999999999999999999999998753


Q ss_pred             CCcceeeeccC--CCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEEEEE
Q psy12056        107 SDDFYVEMISD--QSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINI  154 (200)
Q Consensus       107 ~~~~~~~m~~~--~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~I~~  154 (200)
                          +..|.++  ....++.||++||++++|+.+.+...++.++++.+.-
T Consensus       132 ----~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYa  177 (541)
T KOG2442|consen  132 ----LLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYA  177 (541)
T ss_pred             ----hccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEEEEEC
Confidence                2234432  2335789999999999999999988888888765543

>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2

Probab=99.30  E-value=1.1e-11  Score=95.35  Aligned_cols=101  Identities=19%  Similarity=0.149  Sum_probs=72.2

Q ss_pred             ceEEEEeCCCCCCCCCCCC-CCCccceEEEEEeCCC------CHHHH-------HHHHHHcCCcEEEEEeCCCCCCcce-
Q psy12056         47 EKIRMVPANPPWSCTHPTN-ANTIKGHIALIERGEC------SFVHK-------AMIAESIGARGVIISDNDPDSDDFY-  111 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~~-~~~v~gkIvLv~RG~C------sf~~K-------v~~Aq~aGA~avIi~n~~~~~~~~~-  111 (200)
                      +++++++.....  +..+. ..+++|||||+.|+.|      +|..|       ..+|+++||.|+|++|..+...... 
T Consensus        17 vta~vv~v~~~~--~~~~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~   94 (134)
T cd04815          17 ITAEVVVVKSFD--ELKAAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPH   94 (134)
T ss_pred             cEEEEEEECCHH--HHHhcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCc
Confidence            578888764221  11122 4579999999999999      99999       6999999999999998653311000 


Q ss_pred             eeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEE
Q psy12056        112 VEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYA  150 (200)
Q Consensus       112 ~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a  150 (200)
                      -.+.... .....||++.|+.++|++|...++++..++.
T Consensus        95 ~G~~~~~-~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~  132 (134)
T cd04815          95 TGMMSYD-DGVPKIPAAAISVEDADMLERLAARGKPIRV  132 (134)
T ss_pred             CCccccC-CCCCCCCEEEechhcHHHHHHHHhCCCCeEE
Confidence            0111110 1235699999999999999999999887653

A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a

>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR)

Probab=99.16  E-value=1.5e-10  Score=93.13  Aligned_cols=97  Identities=23%  Similarity=0.266  Sum_probs=68.5

Q ss_pred             ceEEEEeCCCCCCCCC-CC----CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcc--------eee
Q psy12056         47 EKIRMVPANPPWSCTH-PT----NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDF--------YVE  113 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~-~~----~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~--------~~~  113 (200)
                      +.++|+++.  .|... +.    ...+++|||||++||.|.+.+|+++|+++||+|||||++..+....        .+.
T Consensus        29 v~g~lVyvn--~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~  106 (183)
T cd02128          29 VTGKLVYAN--YGRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVH  106 (183)
T ss_pred             eEEEEEEcC--CCCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeeccee
Confidence            578999974  33222 11    2457999999999999999999999999999999999875221000        000


Q ss_pred             e-cc-----------------CCCCCccceeEEEeCHHHHHHHHHHHhcC
Q psy12056        114 M-IS-----------------DQSKREIHIPVAFLVGKNGRVIKNALKRL  145 (200)
Q Consensus       114 m-~~-----------------~~~~~~~~IP~v~Is~~dG~~L~~~l~~~  145 (200)
                      + .+                 ++...-..||++-|+.+++..|++.+...
T Consensus       107 ~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~  156 (183)
T cd02128         107 LGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP  156 (183)
T ss_pred             ccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence            0 00                 00002357999999999999999999664

This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra

>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like

Probab=98.84  E-value=2.2e-08  Score=83.02  Aligned_cols=97  Identities=25%  Similarity=0.187  Sum_probs=69.9

Q ss_pred             ceEEEEeCCCCCCCCCCC------CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCC------------
Q psy12056         47 EKIRMVPANPPWSCTHPT------NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSD------------  108 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~------~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~------------  108 (200)
                      +.++||++.   .|...+      ...+++|||||+++|.|.+..|+++|+++||+|||||++..+..            
T Consensus        45 v~g~lVyvn---yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP~  121 (220)
T cd02121          45 VTAELVYAN---YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYPD  121 (220)
T ss_pred             ceEEEEEcC---CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccccCCC
Confidence            578999974   454322      24589999999999999999999999999999999998753320            


Q ss_pred             ------cce----ee---e-ccC------------------CCCCccceeEEEeCHHHHHHHHHHHhcCC
Q psy12056        109 ------DFY----VE---M-ISD------------------QSKREIHIPVAFLVGKNGRVIKNALKRLN  146 (200)
Q Consensus       109 ------~~~----~~---m-~~~------------------~~~~~~~IP~v~Is~~dG~~L~~~l~~~~  146 (200)
                            +..    +.   . .+|                  ....-..||+.-|+..++..|++.|....
T Consensus       122 g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~  191 (220)
T cd02121         122 GPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG  191 (220)
T ss_pred             CCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC
Confidence                  000    00   0 000                  00122469999999999999999998654

This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower

>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1

Probab=98.75  E-value=4.5e-08  Score=75.91  Aligned_cols=92  Identities=15%  Similarity=0.112  Sum_probs=61.9

Q ss_pred             ceEEEEeCC---CCCCCCCCCC-CCCccceEEEEEeCCC------------------CHHHHHHHHHHcCCcEEEEEeCC
Q psy12056         47 EKIRMVPAN---PPWSCTHPTN-ANTIKGHIALIERGEC------------------SFVHKAMIAESIGARGVIISDND  104 (200)
Q Consensus        47 ~~~~Lv~~~---~~~aC~~~~~-~~~v~gkIvLv~RG~C------------------sf~~Kv~~Aq~aGA~avIi~n~~  104 (200)
                      ..++||++.   ...+|...+. ..+++|||||+.||+|                  ++..|+.+|+++||+|||++++.
T Consensus        20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~   99 (142)
T cd04814          20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL   99 (142)
T ss_pred             cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence            468999864   3456775543 4589999999999999                  68899999999999999999987


Q ss_pred             CCCCcceeeeccCCCCCcccee-EEEeCHHHHHHHHHH
Q psy12056        105 PDSDDFYVEMISDQSKREIHIP-VAFLVGKNGRVIKNA  141 (200)
Q Consensus       105 ~~~~~~~~~m~~~~~~~~~~IP-~v~Is~~dG~~L~~~  141 (200)
                      +....++-.+.. .  ....++ ...|+...+.+|.+.
T Consensus       100 ~~~~~p~~~~~~-~--~~~~~~~~~~i~~~~a~~l~~~  134 (142)
T cd04814         100 APASYGWATWKN-P--AKVHPNLEAAIQRAVAVDLFEA  134 (142)
T ss_pred             CcccCChhhhhc-c--cccCCceeeEecHHHHHHHHhh
Confidence            532211101111 1  112233 355777777766543

A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a

>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3

Probab=98.71  E-value=2.8e-07  Score=72.22  Aligned_cols=93  Identities=17%  Similarity=0.023  Sum_probs=63.8

Q ss_pred             ceEEEEeCC---CCCCCCCCCC-CCCccceEEEEEeCC------------------CCHHHHHHHHHHcCCcEEEEEeCC
Q psy12056         47 EKIRMVPAN---PPWSCTHPTN-ANTIKGHIALIERGE------------------CSFVHKAMIAESIGARGVIISDND  104 (200)
Q Consensus        47 ~~~~Lv~~~---~~~aC~~~~~-~~~v~gkIvLv~RG~------------------Csf~~Kv~~Aq~aGA~avIi~n~~  104 (200)
                      +.++||++.   ...+|...+. ..+++|||||+.||+                  |++..|+.+|+++||+|||++++.
T Consensus        20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~   99 (151)
T cd04822          20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGP   99 (151)
T ss_pred             ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCC
Confidence            478999874   3466765543 468999999999884                  999999999999999999999986


Q ss_pred             CCCCcceeeeccCCCCCccceeEEEeCHHHHHHHHHHHhc
Q psy12056        105 PDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKR  144 (200)
Q Consensus       105 ~~~~~~~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~  144 (200)
                      .......-.+...+  ..   .++.++....+.+...+..
T Consensus       100 ~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~  134 (151)
T cd04822         100 NSHSGDADRLPRFG--GT---APQRVDIAAADPWFTAAEA  134 (151)
T ss_pred             cccCcccccccccC--cc---ceEEechHHHHHHhhhhhh
Confidence            53210000000000  01   1678888887777776433

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1

Probab=98.64  E-value=1e-07  Score=73.48  Aligned_cols=59  Identities=22%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             ceEEEEeCC---CCCCCCCCCC-CCCccceEEEEEeCCCC------------HHHHHHHHHHcCCcEEEEEeCCC
Q psy12056         47 EKIRMVPAN---PPWSCTHPTN-ANTIKGHIALIERGECS------------FVHKAMIAESIGARGVIISDNDP  105 (200)
Q Consensus        47 ~~~~Lv~~~---~~~aC~~~~~-~~~v~gkIvLv~RG~Cs------------f~~Kv~~Aq~aGA~avIi~n~~~  105 (200)
                      +.++||++.   ...+|...+. ..+++|||||+++|.|+            +..|+++|+++||+|||++++..
T Consensus        22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~   96 (137)
T cd04820          22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR   96 (137)
T ss_pred             ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence            578999864   3456775543 46899999999999995            78999999999999999999764

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2)

Probab=98.61  E-value=1.9e-07  Score=72.76  Aligned_cols=98  Identities=14%  Similarity=0.155  Sum_probs=68.2

Q ss_pred             ceEEEEeCCCCCCCCCC----CCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCc------cee--ee
Q psy12056         47 EKIRMVPANPPWSCTHP----TNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDD------FYV--EM  114 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~----~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~------~~~--~m  114 (200)
                      +++++|+++  .|-...    .+.-+++|||||++.|...+..|+++||++||.|+|||.+..+...      ..+  ..
T Consensus        15 Vtg~~VYvN--yG~~eDf~~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~~v~~v~~   92 (153)
T cd02131          15 LQAEVVDVQ--YGSVEDLRRIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWHQAFMVSL   92 (153)
T ss_pred             eEEEEEEec--CCCHHHHHHHHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCccceEEEec
Confidence            578999974  332211    1236799999999999999999999999999999999987643210      000  00


Q ss_pred             --ccC---------------CCCCccceeEEEeCHHHHHHHHHHHhcCC
Q psy12056        115 --ISD---------------QSKREIHIPVAFLVGKNGRVIKNALKRLN  146 (200)
Q Consensus       115 --~~~---------------~~~~~~~IP~v~Is~~dG~~L~~~l~~~~  146 (200)
                        .+|               ....-..||+.-|+..|+..|++.-.+..
T Consensus        93 ~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~~~~  141 (153)
T cd02131          93 NPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPPSRR  141 (153)
T ss_pred             CCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCcccC
Confidence              011               00123569999999999999988765543

This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2

Probab=97.28  E-value=0.00061  Score=53.78  Aligned_cols=58  Identities=19%  Similarity=0.244  Sum_probs=40.6

Q ss_pred             ceEEEEeCC-----CCCCCCCCCCCCCccceEEEEEeCCCC-------------------HHHHHHHHHHcCCcEEEEEe
Q psy12056         47 EKIRMVPAN-----PPWSCTHPTNANTIKGHIALIERGECS-------------------FVHKAMIAESIGARGVIISD  102 (200)
Q Consensus        47 ~~~~Lv~~~-----~~~aC~~~~~~~~v~gkIvLv~RG~Cs-------------------f~~Kv~~Aq~aGA~avIi~n  102 (200)
                      ..++||++.     |..+-++. ...|++|||||+.+|+=.                   ...|.+.|+++||+|+|+++
T Consensus        22 ~~~elVFvGyGi~ape~~~dDy-~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~  100 (157)
T cd04821          22 KDSPLVFVGYGIVAPEYGWDDY-KGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVH  100 (157)
T ss_pred             ccCCEEEeccCccCcccCcccc-cCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEe
Confidence            367888863     11111221 146899999999987543                   33599999999999999997


Q ss_pred             CCC
Q psy12056        103 NDP  105 (200)
Q Consensus       103 ~~~  105 (200)
                      +..
T Consensus       101 ~~~  103 (157)
T cd04821         101 ETE  103 (157)
T ss_pred             CCC
Confidence            654

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>KOG3920|consensus

Probab=93.81  E-value=0.026  Score=44.50  Aligned_cols=23  Identities=52%  Similarity=0.946  Sum_probs=21.8

Q ss_pred             ceeccceeeeeecccCCCCCCCC
Q psy12056        176 ALINIPVNLTYVPIHKINQPPWM  198 (200)
Q Consensus       176 ~~~~~p~~~t~~~~~~~~~~~~~  198 (200)
                      +.+|+|+|+|+.|-.+++||||.
T Consensus       169 a~i~IPVn~t~~P~~~~~~pPW~  191 (193)
T KOG3920|consen  169 AKIDIPVNRTYAPWVHHQKPPWE  191 (193)
T ss_pred             EEEecccccccCCchhhcCCCCc
Confidence            57999999999999999999996

>KOG2195|consensus

Probab=84.83  E-value=1.2  Score=43.19  Aligned_cols=59  Identities=27%  Similarity=0.166  Sum_probs=42.5

Q ss_pred             ceEEEEeCCCCCCCC--CC-CCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q psy12056         47 EKIRMVPANPPWSCT--HP-TNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDP  105 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~--~~-~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~  105 (200)
                      .++.+|+++-...-+  .+ .-.-+++|+|+|++-|.-.+..|+.||+++||.|+++|.+..
T Consensus       158 ~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~  219 (702)
T KOG2195|consen  158 VTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPY  219 (702)
T ss_pred             ccceEEEEecCchhhhhHhhcCcccccCceEEEEccccchhhhHhhHHHhhcCcEEEeeccc
Confidence            456777754111111  11 123457899999999989999999999999999999997654

>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]

Probab=81.57  E-value=3.4  Score=37.07  Aligned_cols=71  Identities=21%  Similarity=0.240  Sum_probs=46.5

Q ss_pred             CCccceEEEEEeCCCCHHHHH--HHHHHcCCcEEEEEeCCCCCCcceeeeccCC---CCCccceeEEEeCHHHHHHHHH
Q psy12056         67 NTIKGHIALIERGECSFVHKA--MIAESIGARGVIISDNDPDSDDFYVEMISDQ---SKREIHIPVAFLVGKNGRVIKN  140 (200)
Q Consensus        67 ~~v~gkIvLv~RG~Csf~~Kv--~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~---~~~~~~IP~v~Is~~dG~~L~~  140 (200)
                      .|+.|++++.+|-+.-...|.  ..|.++||.|+||..+++..   .+...+.+   ....-.||++.+...++..+..
T Consensus        86 gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rr---iV~~Gd~gy~~~s~PtPIPva~v~en~~~y~~~  161 (486)
T COG4882          86 GDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRR---IVTGGDWGYSVSSSPTPIPVAVVPENYSRYAEE  161 (486)
T ss_pred             CCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCcee---EEecccccccCCCCCCCcceEEeccCcchhhcc
Confidence            478899998887655444444  35788999999998766532   22222211   1234579999999888865543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
3eif_A	936	1.9 Angstrom Crystal Structure Of The Active Form O		8e-05

>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 9/77 (11%)
Query: 69  IKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMIS-DQSKREIHIPV 127
           +KG IALIERG+  F  K   A+  GA GV+I DN      F +E+ + DQ      +P 
Sbjct: 288 VKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDN--QDKGFPIELPNVDQ------MPA 339
Query: 128 AFLVGKNGRVIKNALKR 144
           AF+  K+G ++K+  K+
Sbjct: 340 AFISRKDGLLLKDNSKK 356

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
3icu_A	194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	1e-12
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	7e-10
2ek8_A	421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	4e-04

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194

 Score = 62.9 bits (152), Expect = 1e-12
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 14/119 (11%)

Query: 36  FGSSF-NGSFSGEKIRMVPANPPWSCTHPTN--------ANTIKGHIALIERGE-CSFVH 85
           +G        +G  +         +C   TN        +      +ALI+RG  C+F  
Sbjct: 61  YGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFAD 120

Query: 86  KAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKR 144
           K  +A   GA G +I +     +    E+I       + I    +    G  I  +++R
Sbjct: 121 KIHLAYERGASGAVIFNFPGTRN----EVIPMSHPGAVDIVAIMIGNLKGTKILQSIQR 175

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926

 Score = 56.6 bits (136), Expect = 7e-10
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 59  SCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQ 118
             T   +   +KG IALIERG+  F  K   A+  GA GV+I DN        +  +   
Sbjct: 269 RGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQ- 327

Query: 119 SKREIHIPVAFLVGKNGRVIKNALK 143
                 +P AF+  K+G ++K+  +
Sbjct: 328 ------MPAAFISRKDGLLLKDNPQ 346

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 10/131 (7%)

Query: 14  TYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNANTIKGHI 73
             +       L+   + +  + F  S N   + E             T       + G I
Sbjct: 63  EGYTAPSEVTLKIGTEKKEGEAFTYSPNSDVTAE-----LVYVGLGTTADVAGKDLNGKI 117

Query: 74  ALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGK 133
           ALI+RG  SF  K   A   GA+ VII +N            +        +    +  +
Sbjct: 118 ALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGK-----LNGTLGGSDASFVAAVGITKQ 172

Query: 134 NGRVIKNALKR 144
            G  +   L+ 
Sbjct: 173 EGDALAANLRA 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
3icu_A	194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	99.89
3iib_A	444	Peptidase M28; YP_926796.1, structural genomics, J	99.1
2ek8_A	421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	99.08
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	99.07
3fed_A	707	Glutamate carboxypeptidase III; metallopeptidase,	98.89
3kas_A	640	Transferrin receptor protein 1; transferrin recept	98.78
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	98.75
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	98.44
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	97.12

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}

Probab=99.89  E-value=5.2e-22  Score=159.93  Aligned_cols=140  Identities=19%  Similarity=0.180  Sum_probs=107.0

Q ss_pred             cceeccceeEEEeCCCc---cceeeeccccCCcCCCCCCCcccceEEEEeCC---CCCCCCCCCCCC--------Cccce
Q psy12056          7 TEISGENTYFEIIQPEE---LRYTFKIRPAKDFGSSFNGSFSGEKIRMVPAN---PPWSCTHPTNAN--------TIKGH   72 (200)
Q Consensus         7 ~~~~~~~~~~~V~~p~~---l~~~~~~~~a~dFG~~~~~~~~~~~~~Lv~~~---~~~aC~~~~~~~--------~v~gk   72 (200)
                      .|..-..+.++...|..   ....+..-+++ ||...+...  +.+.|+.+.   +..||++.++..        ..+||
T Consensus        30 ~~~~~A~vn~sy~d~~~~~n~t~~~~~e~a~-FG~~~p~~~--v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gk  106 (194)
T 3icu_A           30 EAVWTAYLNVSWRVPHTGVNRTVWELSEEGV-YGQDSPLEP--VAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSW  106 (194)
T ss_dssp             SCEEEEEEEEEEECCSSCTTCEEEEEEEEEE-ECTTSCCSC--EEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCE
T ss_pred             eeEEEEEEEEEEECCCCCccceeeecccccc-cCCCCCCCC--cEEEEEecCCCCCcCCCCCCccccCCcccccccCCCe
Confidence            45566677777777754   22346677898 999876543  367888753   789999976421        14689


Q ss_pred             EEEEEeCC-CCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEE
Q psy12056         73 IALIERGE-CSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYAL  151 (200)
Q Consensus        73 IvLv~RG~-Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~  151 (200)
                      ||||+||+ |+|.+|++|||++||+|+||||+.... ...+.|..++   ...||+++|++++|+.|+++|+++..++.+
T Consensus       107 IaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g-~~~~~m~~~~---~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvt  182 (194)
T 3icu_A          107 LALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTR-NEVIPMSHPG---AVDIVAIMIGNLKGTKILQSIQRGIQVTMV  182 (194)
T ss_dssp             EEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCT-TCCCCCCCTT---CCSSEEEEECHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCC-CceeeecCCC---CCceeEEEECHHHHHHHHHHHHCCCeEEEE
Confidence            99999999 999999999999999999999985221 1245676543   347999999999999999999999888765


Q ss_pred             EE
Q psy12056        152 IN  153 (200)
Q Consensus       152 I~  153 (200)
                      |.
T Consensus       183 i~  184 (194)
T 3icu_A          183 IE  184 (194)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}

Probab=99.10  E-value=9.1e-10  Score=98.51  Aligned_cols=105  Identities=21%  Similarity=0.226  Sum_probs=74.6

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCC---------HHHH----HHHHHHcCCcEEEEEeCCCCCCccee-
Q psy12056         47 EKIRMVPANPPWSCTHPTNANTIKGHIALIERGECS---------FVHK----AMIAESIGARGVIISDNDPDSDDFYV-  112 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Cs---------f~~K----v~~Aq~aGA~avIi~n~~~~~~~~~~-  112 (200)
                      ++++||+......|... ...+++|||||+.|+.|.         |..|    +.+|+++||+|+|++|+..+...... 
T Consensus       106 vta~lV~v~~~~~~~~~-~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~t  184 (444)
T 3iib_A          106 LSATIVRFDTLQDLQNA-EAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHT  184 (444)
T ss_dssp             EEEEEEEESSHHHHHTS-CTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCC
T ss_pred             eEEEEEecCCHHHHhhc-cccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccC
Confidence            68899987644445443 235799999999999995         6666    45799999999999987543211000 


Q ss_pred             -eeccCCCCCccceeEEEeCHHHHHHHHHHHhcCCCeEEEEEE
Q psy12056        113 -EMISDQSKREIHIPVAFLVGKNGRVIKNALKRLNMDYALINI  154 (200)
Q Consensus       113 -~m~~~~~~~~~~IP~v~Is~~dG~~L~~~l~~~~~~~a~I~~  154 (200)
                       .|...  .....||++.|+.++|+.|++.++++..++..+..
T Consensus       185 g~~~~~--~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~  225 (444)
T 3iib_A          185 GMMRYE--EGVTAIPAAAISNPDADLINAMLKRDKEVVISLEL  225 (444)
T ss_dssp             CBCCCC--TTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEE
T ss_pred             CccccC--CCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEE
Confidence             11111  13467999999999999999999888766555444

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*

Probab=99.08  E-value=2.2e-09  Score=95.21  Aligned_cols=90  Identities=22%  Similarity=0.332  Sum_probs=67.6

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCcccee
Q psy12056         47 EKIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIP  126 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP  126 (200)
                      ++++|+++... .++.+. ..+++|||||++||+|+|..|+.+|+++||+|+||+++..+...   ....+  .....||
T Consensus        93 v~a~lv~~~~G-~~~D~~-~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~---g~~~~--~~~~~IP  165 (421)
T 2ek8_A           93 VTAELVYVGLG-TTADVA-GKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLN---GTLGG--SDASFVA  165 (421)
T ss_dssp             EEEEEEECTTC-CTTTTT-TSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCC---CBCSS--CCTTCCE
T ss_pred             cceEEEECCCC-ChhhcC-CCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccc---cccCC--CCCCCcc
Confidence            57889886422 222221 23799999999999999999999999999999999998643211   11111  1346799


Q ss_pred             EEEeCHHHHHHHHHHHh
Q psy12056        127 VAFLVGKNGRVIKNALK  143 (200)
Q Consensus       127 ~v~Is~~dG~~L~~~l~  143 (200)
                      ++.|+.++++.|++.+.
T Consensus       166 ~~~Is~~~a~~L~~~l~  182 (421)
T 2ek8_A          166 AVGITKQEGDALAANLR  182 (421)
T ss_dssp             EEEECHHHHHHHHHHHH
T ss_pred             EEEeCHHHHHHHHHHhh
Confidence            99999999999999984

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*

Probab=99.07  E-value=3e-10  Score=106.15  Aligned_cols=97  Identities=13%  Similarity=0.119  Sum_probs=81.5

Q ss_pred             eEEEEeCCCCCCCCCCC-CCCCc--cceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccc
Q psy12056         48 KIRMVPANPPWSCTHPT-NANTI--KGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIH  124 (200)
Q Consensus        48 ~~~Lv~~~~~~aC~~~~-~~~~v--~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~  124 (200)
                      ..+|+++.....|.+.. +...+  +||||||+||.|.+.+|..+++++||.|+|++|+..   . .   ..    ....
T Consensus       258 ~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~---~-~---~~----~~~~  326 (649)
T 3i6s_A          258 DSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPG---V-F---RS----ATFP  326 (649)
T ss_dssp             EEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGG---G-G---GC----CCCC
T ss_pred             ceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCcc---c-c---cc----ccCc
Confidence            57888887778998753 33445  999999999999999999999999999999998762   1 1   11    2357


Q ss_pred             eeEEEeCHHHHHHHHHHHhcCCCeEEEEEEe
Q psy12056        125 IPVAFLVGKNGRVIKNALKRLNMDYALINIP  155 (200)
Q Consensus       125 IP~v~Is~~dG~~L~~~l~~~~~~~a~I~~~  155 (200)
                      +|+++|+.++|+.|++|++++.+++++|.+.
T Consensus       327 ~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~  357 (649)
T 3i6s_A          327 NPGVVVNKKEGKQVINYVKNSVTPTATITFQ  357 (649)
T ss_dssp             SCEEEECHHHHHHHHHHHHTCSSCEEEEEEE
T ss_pred             CCEEEEcHHHHHHHHHHHhcCCCceEEEeec
Confidence            8999999999999999999999999998874

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...

Probab=98.89  E-value=3e-09  Score=100.24  Aligned_cols=96  Identities=20%  Similarity=0.140  Sum_probs=69.2

Q ss_pred             ceEEEEeCCCCCCCCCCC-----C-CCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCC-------------
Q psy12056         47 EKIRMVPANPPWSCTHPT-----N-ANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDS-------------  107 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~-----~-~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~-------------  107 (200)
                      ++++||++.  .||....     . ..+++|||||++||+|+|..|+.+|+++||+||||||+..+.             
T Consensus       127 v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~  204 (707)
T 3fed_A          127 PEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWN  204 (707)
T ss_dssp             CEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSB
T ss_pred             eEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCcc
Confidence            678999984  6774321     1 457999999999999999999999999999999999863200             


Q ss_pred             -----C-cceee-ec--cCCC------------------CCccceeEEEeCHHHHHHHHHHHhc
Q psy12056        108 -----D-DFYVE-MI--SDQS------------------KREIHIPVAFLVGKNGRVIKNALKR  144 (200)
Q Consensus       108 -----~-~~~~~-m~--~~~~------------------~~~~~IP~v~Is~~dG~~L~~~l~~  144 (200)
                           . ...+. +.  +|..                  .....||++-|+..+|+.|++.+..
T Consensus       205 ~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g  268 (707)
T 3fed_A          205 LPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG  268 (707)
T ss_dssp             CCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred             CCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence                 0 00000 00  1100                  0136899999999999999998864

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A

Probab=98.78  E-value=8.9e-09  Score=96.03  Aligned_cols=96  Identities=21%  Similarity=0.275  Sum_probs=68.0

Q ss_pred             ceEEEEeCCCCCCCCCC-CC-CCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCc--------ceeee-c
Q psy12056         47 EKIRMVPANPPWSCTHP-TN-ANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDD--------FYVEM-I  115 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~-~~-~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~--------~~~~m-~  115 (200)
                      ++++||++.  .||... .. ..+++|||||++||+|.|..|+.+|+++||+||||+++..+...        ..+.. .
T Consensus       108 v~g~lV~vg--~G~~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~  185 (640)
T 3kas_A          108 VTGKLVHAN--FGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGT  185 (640)
T ss_dssp             EEECEEECT--TCCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSS
T ss_pred             eEEEEEEec--CCChhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCC
Confidence            578999974  666432 11 14799999999999999999999999999999999987642110        00000 0


Q ss_pred             cCC-----------------CCCccceeEEEeCHHHHHHHHHHHhc
Q psy12056        116 SDQ-----------------SKREIHIPVAFLVGKNGRVIKNALKR  144 (200)
Q Consensus       116 ~~~-----------------~~~~~~IP~v~Is~~dG~~L~~~l~~  144 (200)
                      +|.                 ......||++.|+.++++.|++.+..
T Consensus       186 Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g  231 (640)
T 3kas_A          186 GDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNMEG  231 (640)
T ss_dssp             SCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEEE
T ss_pred             CCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHccC
Confidence            000                 01134799999999999999987753

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*

Probab=98.75  E-value=8.2e-08  Score=92.96  Aligned_cols=94  Identities=31%  Similarity=0.410  Sum_probs=70.6

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccceeE
Q psy12056         48 KIRMVPANPPWSCTHPTNANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPV  127 (200)
Q Consensus        48 ~~~Lv~~~~~~aC~~~~~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP~  127 (200)
                      ..+|+++.  .+|.+... .+++||||||+||.|+|.+|+.+++++||.++|++|+..+..  .+.+.     ....||+
T Consensus       261 ~~~lv~~~--~g~~~~~~-~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~--~~~~~-----~~~~iP~  330 (926)
T 1xf1_A          261 AYDYAYAN--RGTKEDDF-KDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGF--PIELP-----NVDQMPA  330 (926)
T ss_dssp             CEEEEECT--TSCSTTTT-TTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCC--CEECC-----CSTTCCE
T ss_pred             eEEEEECC--CCCCccch-hhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCc--ccccC-----ccccccE
Confidence            46777754  57876544 589999999999999999999999999999999998775421  11211     2357899


Q ss_pred             EEeCHHHHHHHHHHHhcCCCeEEEEEEeec
Q psy12056        128 AFLVGKNGRVIKNALKRLNMDYALINIPVN  157 (200)
Q Consensus       128 v~Is~~dG~~L~~~l~~~~~~~a~I~~~~~  157 (200)
                      ++|+.++|..|+.    +  +.++|.|+..
T Consensus       331 ~~i~~~~g~~l~~----~--~~~ti~~~~~  354 (926)
T 1xf1_A          331 AFISRKDGLLLKD----N--PQKTITFNAT  354 (926)
T ss_dssp             EEECHHHHHHHHH----C--SSCEEEECSS
T ss_pred             EEEeHHHHHHHHh----C--CceEEEeccc
Confidence            9999999988874    2  3455666433

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=98.44  E-value=4.2e-07  Score=80.98  Aligned_cols=84  Identities=19%  Similarity=0.274  Sum_probs=63.0

Q ss_pred             CCCCCCC---CCCCccceEEEEEeCCC-----CHHHHHHHHHHcCCcEEEEEeCCCCCCcc-eeeeccCCCCCccceeEE
Q psy12056         58 WSCTHPT---NANTIKGHIALIERGEC-----SFVHKAMIAESIGARGVIISDNDPDSDDF-YVEMISDQSKREIHIPVA  128 (200)
Q Consensus        58 ~aC~~~~---~~~~v~gkIvLv~RG~C-----sf~~Kv~~Aq~aGA~avIi~n~~~~~~~~-~~~m~~~~~~~~~~IP~v  128 (200)
                      .+|.+..   +..+++|||+||+||+|     .+..|+.+++++||.++|++|+....... .+.+..   .....||++
T Consensus       258 ~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~---~~~~~~p~~  334 (441)
T 1y9z_A          258 AECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDA---NSDITVPSV  334 (441)
T ss_dssp             EEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECT---TCCCCSCEE
T ss_pred             hccccccccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCcccccccccccc---ccCccccEE
Confidence            4576532   34679999999999987     79999999999999999999876432110 011111   134579999


Q ss_pred             EeCHHHHHHHHHHHhc
Q psy12056        129 FLVGKNGRVIKNALKR  144 (200)
Q Consensus       129 ~Is~~dG~~L~~~l~~  144 (200)
                      +|+.++|+.|++++.+
T Consensus       335 ~v~~~~g~~l~~~~~~  350 (441)
T 1y9z_A          335 SVDRATGLALKAKLGQ  350 (441)
T ss_dssp             EECHHHHHHHHTTTTS
T ss_pred             EEeHHHHHHHHHHhcC
Confidence            9999999999998854

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=97.12  E-value=0.00076  Score=62.51  Aligned_cols=80  Identities=25%  Similarity=0.311  Sum_probs=62.9

Q ss_pred             CCCCCCC-CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCcceeeeccCCCCCccceeEEEeCHHHHH
Q psy12056         58 WSCTHPT-NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISDQSKREIHIPVAFLVGKNGR  136 (200)
Q Consensus        58 ~aC~~~~-~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~~~~~m~~~~~~~~~~IP~v~Is~~dG~  136 (200)
                      ..|.+.. +...++|||+||+|   .+..|..+++.+|+.++|++++..+..            ....+|++.++..+|.
T Consensus       268 ~~~~~~~~~~~~v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~~------------~~~~lP~~~v~~~~g~  332 (621)
T 3vta_A          268 RFCTDKSVNPNLLKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDYA------------DSYPLPSSVLDPNDLL  332 (621)
T ss_dssp             TTTCTTCSCGGGTTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSSC------------CCCSSSEEEECHHHHH
T ss_pred             ccccccccccccccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCcc------------cccccceEEECHHHHH
Confidence            3466543 45578999999985   456788899999999999998764311            2346899999999999


Q ss_pred             HHHHHHhcCCCeEEEE
Q psy12056        137 VIKNALKRLNMDYALI  152 (200)
Q Consensus       137 ~L~~~l~~~~~~~a~I  152 (200)
                      .++.++.....+.+.+
T Consensus       333 ~i~~~~~~~~~~~a~~  348 (621)
T 3vta_A          333 ATLRYIYSIRSPGATI  348 (621)
T ss_dssp             HHHHHHHHHSSCCEEE
T ss_pred             HHHHHHhccCCcceEE
Confidence            9999999988888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1de4c2	193	c.8.4.1 (C:190-382) Transferrin receptor ectodomai	6e-04
d3bi1a2	233	c.8.4.1 (A:118-350) Glutamate carboxypeptidase II	0.003

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 8   EISGENTYFEIIQPEELRYTFKIRPAKDFGSSFNGSFSGEKIRMVPANPPWSCTHPTNAN 67
           + S +N+   + +   L Y  +         S   + +G+   +V AN            
Sbjct: 4   KDSAQNSVIIVDKNGRLVYLVENPGGY-VAYSKAATVTGK---LVHANFGTKKDFEDLYT 59

Query: 68  TIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEM 114
            + G I ++  G+ +F  K   AES+ A GV+I  +         E+
Sbjct: 60  PVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAEL 106

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Glutamate carboxypeptidase II
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 68  TIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDDFYVEMISD 117
              G I +   G+    +K   A+  GA+GVI+  +  D     V+   D
Sbjct: 78  NCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPD 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1de4c2	193	Transferrin receptor ectodomain, apical domain {Hu	99.02
d3bi1a2	233	Glutamate carboxypeptidase II {Human (Homo sapiens	98.74

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.8e-10  Score=90.32  Aligned_cols=94  Identities=22%  Similarity=0.305  Sum_probs=67.0

Q ss_pred             ceEEEEeCCCCCCCCCCC---CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCCCCc-----ceee---e-
Q psy12056         47 EKIRMVPANPPWSCTHPT---NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPDSDD-----FYVE---M-  114 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~---~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~~~~-----~~~~---m-  114 (200)
                      ++++||++.  . |...+   ...+++|||||++||+|.|.+|+++||++||+|+|||++..+...     .+..   + 
T Consensus        39 v~g~lVy~n--~-G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~  115 (193)
T d1de4c2          39 VTGKLVHAN--F-GTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLG  115 (193)
T ss_dssp             EEECEEECS--T-TCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSS
T ss_pred             eeEEEEEcc--C-CCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccC
Confidence            578999974  2 33211   135789999999999999999999999999999999987543110     0000   0 


Q ss_pred             ccC-----------------CCCCccceeEEEeCHHHHHHHHHHHh
Q psy12056        115 ISD-----------------QSKREIHIPVAFLVGKNGRVIKNALK  143 (200)
Q Consensus       115 ~~~-----------------~~~~~~~IP~v~Is~~dG~~L~~~l~  143 (200)
                      .+|                 ....-..||+.-|+.+|++.|++.|.
T Consensus       116 ~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         116 TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             SSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             CCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence            011                 00123469999999999999999985

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Glutamate carboxypeptidase II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=9.9e-09  Score=82.52  Aligned_cols=95  Identities=18%  Similarity=0.170  Sum_probs=67.2

Q ss_pred             ceEEEEeCCCCCCCCCCC-------CCCCccceEEEEEeCCCCHHHHHHHHHHcCCcEEEEEeCCCC-------------
Q psy12056         47 EKIRMVPANPPWSCTHPT-------NANTIKGHIALIERGECSFVHKAMIAESIGARGVIISDNDPD-------------  106 (200)
Q Consensus        47 ~~~~Lv~~~~~~aC~~~~-------~~~~v~gkIvLv~RG~Csf~~Kv~~Aq~aGA~avIi~n~~~~-------------  106 (200)
                      ++++||++.  . |...+       ...+++|||||+++|+|.+.+|+++||++||+|+|||++..+             
T Consensus        53 v~g~~Vyvn--y-G~~~Df~~L~~~~gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP~d~~~~g~~~yP~~~  129 (233)
T d3bi1a2          53 PEGDLVYVN--Y-ARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPDGW  129 (233)
T ss_dssp             CEECEEECT--T-CCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTSSS
T ss_pred             eeEEEEEec--C-CcHHHHHHHHHhcCCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecChHHccCcccccccCCc
Confidence            678999974  2 43321       145799999999999999999999999999999999986310             


Q ss_pred             -----CCc-ceee-e--ccC------------------CCCCccceeEEEeCHHHHHHHHHHHhc
Q psy12056        107 -----SDD-FYVE-M--ISD------------------QSKREIHIPVAFLVGKNGRVIKNALKR  144 (200)
Q Consensus       107 -----~~~-~~~~-m--~~~------------------~~~~~~~IP~v~Is~~dG~~L~~~l~~  144 (200)
                           ... .-+. +  .+|                  ....-..||+.-|+.+|+..|++.|..
T Consensus       130 ~~p~~~vqrgsv~~~~~~GDplTPg~ps~~~~~r~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~G  194 (233)
T d3bi1a2         130 NLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMGG  194 (233)
T ss_dssp             BCCTTCCCCEECCCCTTCCSTTCTTSCCCTTCCCCCGGGCSSCCSSCEEEECHHHHHHHHTTBCB
T ss_pred             cCCCCceeEeeeeecCCCCCCCCCCCCCCCCCcccChhHhcCCCCCceeccCHHHHHHHHHHcCC
Confidence                 000 0000 0  000                  011235899999999999999998864