Psyllid ID: psy12057

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MSCPWTVVWVLISIHNMCFKFQPIAWLSTHSMAIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPPK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccHHcccccccccccccccccccHHHHHHHHHccccccEEEEEEcccccccccEEEcccccEEEEEccccccccccccEEEEEEcccccccccEEEEEEccccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccHcccEEEHHcccEEcccccccccccHHHHHHHHccccccccccccccHHHHHHcccccHHHHHHHHHHcccccEEEEEEccccccccccEEEcccccEEEEEEcccccccccccEEEEEEcHHHHccccEEEEEEccccEcEEEEEccccccccccccc
Coil and Loop (DISEMBL)
MSCPWTVVWVLISIHNMcfkfqpiawlstHSMAIKTSSVNTILLELFLAMDIYSRLlifpgkrrretggfpgasIIQSQIKsgvsrkrtgltstgvpirpgyeifnandqrvgaitsgcpspslkkniamgyiepayskVGVELWVRVRdkrvdvkvtkmpflksnyhtppk
Flexible Loop (DISEMBL)
MSCPWTVVWVLISIHNMCFKFQPIAWLSTHSMAIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETggfpgasiiqsqiksgvsrkrtgltstgvpirpgyEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRdkrvdvkvtkmpflksnyhtppk
Low Complexity Region (SEG)
MSCPWTVVWVLISIHNMCFKFQPIAWLSTHSMAIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWvrvrdkrvdvkvTKMPFLKSNYHTPPK
Disordered region (IsUnstruct)
**CPWTVVWVLISIHNMCFKFQPIAWLSTHSMAIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASII**************LTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFL*********
Disordered Region (DISOPRED)
MSCPWTVVWVLISIHNMCFKFQPIAWLSTHSMAIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLK*NY*****
Disordered Region (DISEMBL)
MSCPWTVVWVLISIHNMCFKFQPIAWLSTHSMAIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPPK
Disordered Region (DISPRO)
*SCPWTVVWVLISIHNMCFKFQPIAWLSTHSMAIKTSSVNTILLELFLAM*****************GGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYH****
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSCPWTVVWVLISIHNMCFKFQPIAWLSTHSMAIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPPK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q9TSZ7	403	Aminomethyltransferase, m	yes	N/A	0.633	0.270	0.513	7e-26
P28337	392	Aminomethyltransferase, m	yes	N/A	0.680	0.298	0.512	2e-25
P48728	403	Aminomethyltransferase, m	no	N/A	0.633	0.270	0.504	6e-25
Q8CFA2	403	Aminomethyltransferase, m	yes	N/A	0.633	0.270	0.513	8e-25
P25285	397	Aminomethyltransferase, m	yes	N/A	0.627	0.272	0.5	3e-24
P54260	406	Aminomethyltransferase, m	N/A	N/A	0.639	0.270	0.481	2e-21
O65396	408	Aminomethyltransferase, m	yes	N/A	0.639	0.269	0.445	3e-21
O23936	407	Aminomethyltransferase, m	N/A	N/A	0.639	0.270	0.472	5e-21
O49849	407	Aminomethyltransferase, m	N/A	N/A	0.639	0.270	0.472	6e-21
P49363	407	Aminomethyltransferase, m	N/A	N/A	0.639	0.270	0.472	6e-21

>sp|Q9TSZ7|GCST_CANFA Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1

 Score =  116 bits (290), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 71/109 (65%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR    FPGAS+I +Q+K  V R+R GLT  G P+R    I N     +G +TSGCP
Sbjct: 293 GKRRRAAMDFPGASVIIAQLKGKVQRRRVGLTCEGAPVRAHSPILNMEGTVIGTVTSGCP 352

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           SP LKKN+AMGY+   YS+ G  L V VR K+    V+KMPF+ +NY+T
Sbjct: 353 SPCLKKNVAMGYVPSEYSRPGTPLLVEVRRKQQMAVVSKMPFVTTNYYT 401

The glycine cleavage system catalyzes the degradation of glycine.
Canis familiaris (taxid: 9615)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 0

>sp|P28337|GCST_CHICK Aminomethyltransferase, mitochondrial OS=Gallus gallus GN=AMT PE=2 SV=2

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 75/117 (64%)

Query: 52  IYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQR 111
           + + LL   GKRRR    FPGA+II  Q+K    RKR GLTS G P+RP   I       
Sbjct: 273 VEAGLLWTLGKRRRTAMDFPGAAIIMEQVKEKPKRKRVGLTSVGPPLRPPAAILGPEGTP 332

Query: 112 VGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYH 168
           VG +TSGCPSPSL KNIAMGY++ A+S+ G  L V VR K+    VTKMPF+ ++Y+
Sbjct: 333 VGTVTSGCPSPSLGKNIAMGYVQAAHSRPGTTLTVEVRKKQHPALVTKMPFVPTHYY 389

The glycine cleavage system catalyzes the degradation of glycine.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P48728|GCST_HUMAN Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1

 Score =  113 bits (283), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 70/109 (64%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR    FPGA +I  Q+K  V R+R GL   G P+R    I N    ++G +TSGCP
Sbjct: 293 GKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCP 352

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           SPSLKKN+AMGY+   YS+ G  L V VR K+    V+KMPF+ +NY+T
Sbjct: 353 SPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYT 401

The glycine cleavage system catalyzes the degradation of glycine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|Q8CFA2|GCST_MOUSE Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1

 Score =  112 bits (281), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 70/109 (64%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR    FPGA II  Q+K  V R+R GL   G P+R    I N     +G +TSGCP
Sbjct: 293 GKRRRIAMDFPGAKIIVPQLKGEVQRRRVGLICEGAPVRAHSPILNTEGTVIGTVTSGCP 352

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           SPSLKKN+AMGY+   YS+ G +L V VR K+    V+KMPF+ +NY+T
Sbjct: 353 SPSLKKNVAMGYVPFKYSRPGTQLLVEVRRKQQMTVVSKMPFVPTNYYT 401

The glycine cleavage system catalyzes the degradation of glycine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P25285|GCST_BOVIN Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 69/108 (63%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR    FPGAS+I  Q+KS   R+R GL   G P+R    I +     +GA+TSGCP
Sbjct: 287 GKRRRAAMDFPGASVIVPQLKSKAQRRRVGLMCDGAPVRAQSPILSPEGTVIGAVTSGCP 346

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYH 168
           SP LKKN+AMGY+   YS+ G  L V VR K+    V+KMPF+ +NY+
Sbjct: 347 SPCLKKNVAMGYVPYEYSRPGTPLLVEVRRKQQPAVVSKMPFVSTNYY 394

The glycine cleavage system catalyzes the degradation of glycine.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P54260|GCST_SOLTU Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 68/110 (61%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR  GGF GA +I  QI+ G   +R G  S+G P R   EI ++N Q +G ITSG  
Sbjct: 297 GKRRRAEGGFLGAEVILKQIEEGPKIRRVGFFSSGPPPRSHSEIQDSNGQNIGEITSGGF 356

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTP 170
           SP LKKNIAMGY++    K G  + + +R K  D  VTKMPF+ + Y+ P
Sbjct: 357 SPCLKKNIAMGYVKTGNHKAGTNVKIVIRGKSYDGVVTKMPFVPTKYYKP 406

The glycine cleavage system catalyzes the degradation of glycine.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 70/110 (63%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR  GGF GA +I  Q+K G + +R G  S+G P R   E+ + +  ++G ITSG  
Sbjct: 298 GKRRRAEGGFLGADVILQQLKDGPTIRRVGFFSSGPPARSHSEVHDESGNKIGEITSGGF 357

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTP 170
           SP+LKKNIAMGY++    K G ++ + VR K  +  +TKMPF+ + Y+ P
Sbjct: 358 SPNLKKNIAMGYVKSGQHKTGTKVKILVRGKPYEGSITKMPFVATKYYKP 407

The glycine cleavage system catalyzes the degradation of glycine.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O23936|GCST_FLATR Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1

 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 67/110 (60%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR  GGF GA +I  QI  G + +R GL STG P R   EI N   + +G +TSG  
Sbjct: 297 GKRRRAEGGFLGAEVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEQGENIGEVTSGGF 356

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTP 170
           SP LKKNI MGY++    K G +L + +R K  +  VTKMPF+ + Y+ P
Sbjct: 357 SPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKP 406

The glycine cleavage system catalyzes the degradation of glycine.

Flaveria trinervia (taxid: 4227)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O49849|GCST_FLAAN Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1

 Score =  100 bits (248), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 67/110 (60%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR  GGF GA +I  QI  G + +R GL STG P R   EI N   + +G +TSG  
Sbjct: 297 GKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGF 356

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTP 170
           SP LKKNI MGY++    K G +L + +R K  +  VTKMPF+ + Y+ P
Sbjct: 357 SPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKP 406

The glycine cleavage system catalyzes the degradation of glycine.

Flaveria anomala (taxid: 35877)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P49363|GCST_FLAPR Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1

 Score =  100 bits (248), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 67/110 (60%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR  GGF GA +I  QI  G + +R GL STG P R   EI N   + +G +TSG  
Sbjct: 297 GKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGF 356

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTP 170
           SP LKKNI MGY++    K G +L + +R K  +  VTKMPF+ + Y+ P
Sbjct: 357 SPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKP 406

The glycine cleavage system catalyzes the degradation of glycine.

Flaveria pringlei (taxid: 4226)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
195997667	373	hypothetical protein TRIADDRAFT_18436 [T	0.633	0.292	0.559	7e-29
312373034	335	hypothetical protein AND_18397 [Anophele	0.703	0.361	0.479	5e-27
126336026	401	PREDICTED: aminomethyltransferase, mitoc	0.633	0.271	0.550	3e-26
395516319	411	PREDICTED: aminomethyltransferase, mitoc	0.633	0.265	0.541	5e-26
327265707	407	PREDICTED: aminomethyltransferase, mitoc	0.633	0.267	0.568	1e-25
270008909	403	hypothetical protein TcasGA2_TC015522 [T	0.645	0.275	0.544	2e-25
118795262	415	AGAP001124-PA [Anopheles gambiae str. PE	0.703	0.291	0.479	3e-25
301614085	404	PREDICTED: aminomethyltransferase, mitoc	0.633	0.269	0.550	3e-25
147906134	404	aminomethyltransferase [Xenopus laevis]	0.633	0.269	0.541	3e-25
189238264	1612	PREDICTED: similar to chloride channel p	0.651	0.069	0.539	5e-25

>gi|195997667|ref|XP_002108702.1| hypothetical protein TRIADDRAFT_18436 [Trichoplax adhaerens] gi|190589478|gb|EDV29500.1| hypothetical protein TRIADDRAFT_18436, partial [Trichoplax adhaerens]

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 81/109 (74%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GK RR TG FPG+  I  Q++ G SRKR GL STG P R G +IF+++D  +G ITSG P
Sbjct: 263 GKARRNTGNFPGSDTIIKQLQEGPSRKRVGLISTGPPARGGTKIFSSHDDEIGIITSGSP 322

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           SPSLKKNIAMGYI+ A+ K+G E+ ++VR+K+V+  + +MPFL SNY+ 
Sbjct: 323 SPSLKKNIAMGYIKTAFCKIGTEVQLQVRNKKVNATIARMPFLPSNYYN 371

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|312373034|gb|EFR20865.1| hypothetical protein AND_18397 [Anopheles darlingi]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 82/123 (66%), Gaps = 2/123 (1%)

Query: 52  IYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTG--LTSTGVPIRPGYEIFNAND 109
           + + LL    K RR    FPG+++I +QIK+GV+R+R G  + S G P R   EI++   
Sbjct: 213 VEANLLWLVAKARRVENNFPGSNVINAQIKNGVTRRRVGFKMESGGAPARQHVEIYDNEQ 272

Query: 110 QRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           Q+VG ITSGCPSP L++N+AMGYI   Y K G E+ ++VRDK     VTKMPF+ ++Y+ 
Sbjct: 273 QKVGEITSGCPSPCLQQNVAMGYIREEYKKPGTEIMLKVRDKHYHSVVTKMPFVATHYYQ 332

Query: 170 PPK 172
           PPK
Sbjct: 333 PPK 335

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|126336026|ref|XP_001378019.1| PREDICTED: aminomethyltransferase, mitochondrial-like [Monodelphis domestica]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 75/109 (68%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR    FPGA+I+  QIK  ++RKR GLTSTG PIR    I N     +G ITSGCP
Sbjct: 291 GKRRRAAMDFPGAAIVVPQIKGKLTRKRVGLTSTGAPIRQHSLIMNTEGAVIGEITSGCP 350

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           SP LKKN+AMGY++  YSK+G  L V VR K+ +  V+KMPF+ + Y+T
Sbjct: 351 SPCLKKNVAMGYVDGQYSKIGTPLMVEVRKKQQEAVVSKMPFVPTRYYT 399

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395516319|ref|XP_003762338.1| PREDICTED: aminomethyltransferase, mitochondrial [Sarcophilus harrisii]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 75/109 (68%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR    FPGA+I+  Q+K  ++RKR GLTSTG PIR    I N     +G ITSGCP
Sbjct: 301 GKRRRAAMDFPGAAIVIPQMKGRLARKRVGLTSTGAPIRQHSLIMNTEGAVIGEITSGCP 360

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           SP LKKN+AMGY++  YSK+G  L V VR K+ +  V+KMPF+ + Y+T
Sbjct: 361 SPCLKKNVAMGYVDGGYSKIGTPLLVEVRKKQQEAVVSKMPFVPTRYYT 409

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327265707|ref|XP_003217649.1| PREDICTED: aminomethyltransferase, mitochondrial-like [Anolis carolinensis]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 73/109 (66%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR    FPGASII +QIK    RKR GLTS G PIR    I    D+ +G ITSGCP
Sbjct: 297 GKRRRVAMDFPGASIILAQIKEKPKRKRVGLTSIGPPIRQHVPILGPKDKAIGEITSGCP 356

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           SP L+KN+AMGY+E  YSKVG  L V VR K     VTKMPF+ ++Y++
Sbjct: 357 SPCLQKNVAMGYVESEYSKVGTSLTVEVRKKSCPSLVTKMPFVPTHYYS 405

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270008909|gb|EFA05357.1| hypothetical protein TcasGA2_TC015522 [Tribolium castaneum]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 75/112 (66%), Gaps = 1/112 (0%)

Query: 62  KRRRETGGFPGASIIQSQIKSGVSRKRTGL-TSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           KRRRE+  FPGA  I SQIK+G SRKR GL   +G P R G  I +AN   +G++TSGCP
Sbjct: 292 KRRRESRDFPGAETIVSQIKNGTSRKRVGLIADSGPPARHGTPIVDANGNEIGSVTSGCP 351

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPPK 172
           SPSL KNIAM Y+    SK G +  +++RDK     VTKMPF+ SNY+  PK
Sbjct: 352 SPSLGKNIAMAYVPADLSKNGTKHNLKIRDKIYSAVVTKMPFVPSNYYNKPK 403

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118795262|ref|XP_322034.3| AGAP001124-PA [Anopheles gambiae str. PEST] gi|116116686|gb|EAA01036.3| AGAP001124-PA [Anopheles gambiae str. PEST]

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 2/123 (1%)

Query: 52  IYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTG--LTSTGVPIRPGYEIFNAND 109
           + + LL    K RR    FPG+  I SQIK+GV+R+R G  + S   P R   EI+N   
Sbjct: 293 VEANLLWLVAKPRRVENNFPGSDKINSQIKNGVTRRRVGFKMDSGAPPARQHVEIYNNEQ 352

Query: 110 QRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           Q+VG ITSGCPSP L++NIAMGYI   Y K+G E+ ++VRDK     V KMPF+ ++Y+ 
Sbjct: 353 QKVGEITSGCPSPCLQQNIAMGYIREEYKKLGTEITLKVRDKHYHSAVAKMPFVATHYYQ 412

Query: 170 PPK 172
            PK
Sbjct: 413 APK 415

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301614085|ref|XP_002936519.1| PREDICTED: aminomethyltransferase, mitochondrial-like [Xenopus (Silurana) tropicalis]

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 72/109 (66%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR    FPGASII  QIK  V  KR GLTSTG P+R    I N   + +G +TSGCP
Sbjct: 294 GKRRRTAMDFPGASIIVPQIKGKVKHKRVGLTSTGPPVRQHAPILNQEGRIIGEVTSGCP 353

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           SPSL+ N+AMGY+EP Y+K G  +   VR K VD   TKMPF+ + Y+T
Sbjct: 354 SPSLRVNVAMGYVEPEYAKAGTAVRFEVRKKIVDGVTTKMPFVPTKYYT 402

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|147906134|ref|NP_001090416.1| aminomethyltransferase [Xenopus laevis] gi|114108200|gb|AAI23374.1| MGC154901 protein [Xenopus laevis]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 72/109 (66%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR    FPGAS+I  QIK  V  KR GLTSTG P+R    I N   + +G +TSGCP
Sbjct: 294 GKRRRTAMDFPGASVIVPQIKGKVKHKRVGLTSTGPPVRQHAPILNLEGRVIGEVTSGCP 353

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           SPSL+ N+AMGY+EP Y+K G  +   VR K VD   TKMPF+ + Y+T
Sbjct: 354 SPSLRVNVAMGYVEPEYAKAGTAVRFEVRKKIVDGVTTKMPFVPAKYYT 402

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|189238264|ref|XP_974499.2| PREDICTED: similar to chloride channel protein 2 [Tribolium castaneum]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 75/113 (66%), Gaps = 1/113 (0%)

Query: 61   GKRRRETGGFPGASIIQSQIKSGVSRKRTGL-TSTGVPIRPGYEIFNANDQRVGAITSGC 119
             KRRRE+  FPGA  I SQIK+G SRKR GL   +G P R G  I +AN   +G++TSGC
Sbjct: 1500 AKRRRESRDFPGAETIVSQIKNGTSRKRVGLIADSGPPARHGTPIVDANGNEIGSVTSGC 1559

Query: 120  PSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPPK 172
            PSPSL KNIAM Y+    SK G +  +++RDK     VTKMPF+ SNY+  PK
Sbjct: 1560 PSPSLGKNIAMAYVPADLSKNGTKHNLKIRDKIYSAVVTKMPFVPSNYYNKPK 1612

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
UNIPROTKB|P28337	392	AMT "Aminomethyltransferase, m	0.627	0.275	0.490	1.8e-22
UNIPROTKB|Q9TSZ7	403	AMT "Aminomethyltransferase, m	0.633	0.270	0.467	2.4e-22
ZFIN|ZDB-GENE-041010-114	409	amt "aminomethyltransferase" [	0.627	0.264	0.462	3.5e-22
UNIPROTKB|B4DGG9	306	AMT "Aminomethyltransferase" [	0.633	0.356	0.458	7e-22
UNIPROTKB|P48728	403	AMT "Aminomethyltransferase, m	0.633	0.270	0.458	1.2e-21
MGI|MGI:3646700	403	Amt "aminomethyltransferase" [	0.633	0.270	0.467	1.2e-21
RGD|1359408	403	Amt "aminomethyltransferase" [	0.633	0.270	0.458	1e-20
UNIPROTKB|P25285	397	AMT "Aminomethyltransferase, m	0.627	0.272	0.453	1.2e-20
UNIPROTKB|I3LIR4	403	AMT "Aminomethyltransferase" [	0.633	0.270	0.449	1.3e-20
FB|FBgn0032287	409	CG6415 [Drosophila melanogaste	0.639	0.268	0.464	1.4e-20

UNIPROTKB|P28337 AMT "Aminomethyltransferase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 261 (96.9 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 53/108 (49%), Positives = 65/108 (60%)

Query:    61 GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
             GKRRR    FPGA+II  Q+K    RKR GLTS G P+RP   I       VG +TSGCP
Sbjct:   282 GKRRRTAMDFPGAAIIMEQVKEKPKRKRVGLTSVGPPLRPPAAILGPEGTPVGTVTSGCP 341

Query:   121 SPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNYH 168
             SPSL KNIAMGY++ A+S+ G  L             TKMPF+ ++Y+
Sbjct:   342 SPSLGKNIAMGYVQAAHSRPGTTLTVEVRKKQHPALVTKMPFVPTHYY 389

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9TSZ7 AMT "Aminomethyltransferase, mitochondrial" [Canis lupus familiaris (taxid:9615)]

 Score = 261 (96.9 bits), Expect = 2.4e-22, P = 2.4e-22
 Identities = 51/109 (46%), Positives = 65/109 (59%)

Query:    61 GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
             GKRRR    FPGAS+I +Q+K  V R+R GLT  G P+R    I N     +G +TSGCP
Sbjct:   293 GKRRRAAMDFPGASVIIAQLKGKVQRRRVGLTCEGAPVRAHSPILNMEGTVIGTVTSGCP 352

Query:   121 SPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNYHT 169
             SP LKKN+AMGY+   YS+ G  L             +KMPF+ +NY+T
Sbjct:   353 SPCLKKNVAMGYVPSEYSRPGTPLLVEVRRKQQMAVVSKMPFVTTNYYT 401

GO:0005739 "mitochondrion" evidence=IEA

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

ZFIN|ZDB-GENE-041010-114 amt "aminomethyltransferase" [Danio rerio (taxid:7955)]

 Score = 260 (96.6 bits), Expect = 3.5e-22, P = 3.5e-22
 Identities = 50/108 (46%), Positives = 68/108 (62%)

Query:    61 GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
             GKRRR+   FPGA II  QIK+   RKR GL STG P+R    I +++ + +G +TSGCP
Sbjct:   300 GKRRRQARDFPGADIIVPQIKAKTPRKRVGLISTGPPVRQHTPILSSDGRVIGEVTSGCP 359

Query:   121 SPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNYH 168
             SP LK+N+AMGY+E A+SK G  +             +KMPF+ + Y+
Sbjct:   360 SPCLKQNVAMGYVETAFSKAGTSIQVEVRKKAVPAVVSKMPFVPTKYY 407

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|B4DGG9 AMT "Aminomethyltransferase" [Homo sapiens (taxid:9606)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 50/109 (45%), Positives = 64/109 (58%)

Query:    61 GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
             GKRRR    FPGA +I  Q+K  V R+R GL   G P+R    I N    ++G +TSGCP
Sbjct:   196 GKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCP 255

Query:   121 SPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNYHT 169
             SPSLKKN+AMGY+   YS+ G  L             +KMPF+ +NY+T
Sbjct:   256 SPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYT 304

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P48728 AMT "Aminomethyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 255 (94.8 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 50/109 (45%), Positives = 64/109 (58%)

Query:    61 GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
             GKRRR    FPGA +I  Q+K  V R+R GL   G P+R    I N    ++G +TSGCP
Sbjct:   293 GKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCP 352

Query:   121 SPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNYHT 169
             SPSLKKN+AMGY+   YS+ G  L             +KMPF+ +NY+T
Sbjct:   353 SPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYT 401

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:3646700 Amt "aminomethyltransferase" [Mus musculus (taxid:10090)]

 Score = 255 (94.8 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 51/109 (46%), Positives = 64/109 (58%)

Query:    61 GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
             GKRRR    FPGA II  Q+K  V R+R GL   G P+R    I N     +G +TSGCP
Sbjct:   293 GKRRRIAMDFPGAKIIVPQLKGEVQRRRVGLICEGAPVRAHSPILNTEGTVIGTVTSGCP 352

Query:   121 SPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNYHT 169
             SPSLKKN+AMGY+   YS+ G +L             +KMPF+ +NY+T
Sbjct:   353 SPSLKKNVAMGYVPFKYSRPGTQLLVEVRRKQQMTVVSKMPFVPTNYYT 401

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

RGD|1359408 Amt "aminomethyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 247 (92.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 50/109 (45%), Positives = 63/109 (57%)

Query:    61 GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
             GKRRR    FPGA II  Q+K  V R+R GL   G P+R    I N     +G +TSGCP
Sbjct:   293 GKRRRVAMDFPGAKIIIPQLKGEVQRRRVGLICEGAPMRAHSPILNTEGAVIGTVTSGCP 352

Query:   121 SPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNYHT 169
             SPSLKKN+AMGY+   YS+ G +L             +KMPF+ + Y+T
Sbjct:   353 SPSLKKNVAMGYVAFKYSRPGTQLLVEVRRKQQMTVVSKMPFVPTKYYT 401

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P25285 AMT "Aminomethyltransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 246 (91.7 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 49/108 (45%), Positives = 63/108 (58%)

Query:    61 GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
             GKRRR    FPGAS+I  Q+KS   R+R GL   G P+R    I +     +GA+TSGCP
Sbjct:   287 GKRRRAAMDFPGASVIVPQLKSKAQRRRVGLMCDGAPVRAQSPILSPEGTVIGAVTSGCP 346

Query:   121 SPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNYH 168
             SP LKKN+AMGY+   YS+ G  L             +KMPF+ +NY+
Sbjct:   347 SPCLKKNVAMGYVPYEYSRPGTPLLVEVRRKQQPAVVSKMPFVSTNYY 394

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0031405 "lipoic acid binding" evidence=IDA

GO:0006546 "glycine catabolic process" evidence=TAS

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

UNIPROTKB|I3LIR4 AMT "Aminomethyltransferase" [Sus scrofa (taxid:9823)]

 Score = 246 (91.7 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/109 (44%), Positives = 65/109 (59%)

Query:    61 GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
             GKRRR    FPGAS+I  Q+KS V R+R GLT  G P+R    I +     +G +TSGCP
Sbjct:   293 GKRRRAAMDFPGASVIVPQLKSKVQRRRVGLTCEGAPVRAHSPILSTEGTVIGTVTSGCP 352

Query:   121 SPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNYHT 169
             SP LKKN+AMGY+   +S+ G  L             +KMPF+ ++Y+T
Sbjct:   353 SPCLKKNVAMGYVPYEHSRPGTLLLVEVRRKQQVAVVSKMPFVPTSYYT 401

GO:0005739 "mitochondrion" evidence=IEA

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

FB|FBgn0032287 CG6415 [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 53/114 (46%), Positives = 66/114 (57%)

Query:    62 KRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGV---PIRPGYEIFNANDQRVGAITSG 118
             KRRR T  FPGA +I  Q+K GVSR+R GL   G    P R G  IF+   Q+VG +TSG
Sbjct:   296 KRRRTTRDFPGADVILGQLKEGVSRRRVGLQMLGTKPPPARSGVAIFSQG-QQVGQVTSG 354

Query:   119 CPSPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNYHTPPK 172
             CPSPS  +NIAMGY+       G ++             TKMPF+K+NY+  PK
Sbjct:   355 CPSPSAGRNIAMGYVAENLKAPGTKVEFKVRDKLYEAEVTKMPFVKANYYNRPK 408

GO:0004047 "aminomethyltransferase activity" evidence=ISS

GO:0005960 "glycine cleavage complex" evidence=ISS

GO:0006546 "glycine catabolic process" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CFA2	GCST_MOUSE	2, ., 1, ., 2, ., 1, 0	0.5137	0.6337	0.2704	yes	N/A
Q9TSZ7	GCST_CANFA	2, ., 1, ., 2, ., 1, 0	0.5137	0.6337	0.2704	yes	N/A
P28337	GCST_CHICK	2, ., 1, ., 2, ., 1, 0	0.5128	0.6802	0.2984	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.2	LOW CONFIDENCE prediction!
4th Layer	2.1.2.10	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	172
PLN02319	404	PLN02319, PLN02319, aminomethyltransferase	9e-43
PRK13579	370	PRK13579, gcvT, glycine cleavage system aminomethy	2e-33
pfam08669	95	pfam08669, GCV_T_C, Glycine cleavage T-protein C-t	4e-31
COG0404	379	COG0404, GcvT, Glycine cleavage system T protein (	3e-27
PRK00389	359	PRK00389, gcvT, glycine cleavage system aminomethy	2e-25
TIGR00528	362	TIGR00528, gcvT, glycine cleavage system T protein	4e-22
PRK12486	368	PRK12486, dmdA, putative dimethyl sulfoniopropiona	2e-05
TIGR01372	985	TIGR01372, soxA, sarcosine oxidase, alpha subunit	6e-04

>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase

 Score =  146 bits (370), Expect = 9e-43
 Identities = 57/111 (51%), Positives = 74/111 (66%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR  GGF GA +I  Q+K GVSR+R G  S+G P R   EI + + +++G +TSG  
Sbjct: 294 GKRRRAEGGFLGADVILKQLKEGVSRRRVGFISSGAPARSHSEILDESGEKIGEVTSGGF 353

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPP 171
           SP LKKNIAMGY++  + K G E+ V VR K  D  VTKMPF+ + Y+ PP
Sbjct: 354 SPCLKKNIAMGYVKSGFHKAGTEVKVEVRGKMYDAVVTKMPFVPTKYYKPP 404

Length = 404

>gnl|CDD|237435 PRK13579, gcvT, glycine cleavage system aminomethyltransferase T; Provisional

 Score =  121 bits (305), Expect = 2e-33
 Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 62  KRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGCP 120
           K RRE GGFPGA  I + +  G SR+R GL   G  P+R G  +F+     +G +TSG  
Sbjct: 262 KARREAGGFPGAKAILAALAKGASRRRVGLKPEGRAPVREGAPLFDDAGTEIGTVTSGGF 321

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYH 168
            PS+   +AMGY+  + +  G  ++  VR KR+ V V  +PF+   Y 
Sbjct: 322 GPSVGGPVAMGYVPASLAAPGTAVFAEVRGKRLPVTVHALPFVPHRYK 369

Length = 370

>gnl|CDD|219963 pfam08669, GCV_T_C, Glycine cleavage T-protein C-terminal barrel domain

 Score =  107 bits (270), Expect = 4e-31
 Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 68  GGFPGASIIQSQIKSGVSRKR-TGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLK 125
           G F G   +  Q   GV R+R  GL   G  P R G  +  A+ + VG +TSG  SP+L 
Sbjct: 1   GDFIGKEALARQKAEGVVRRRLVGLLLDGDGPPREGEPVLAADGEVVGEVTSGTYSPTLG 60

Query: 126 KNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKM 160
           KNIA+ Y+   +++ G E+ V +R KRV   V K+
Sbjct: 61  KNIALAYVRTEHAEPGTEVEVEIRGKRVPATVVKL 95

This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. Length = 95

>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]

 Score =  104 bits (262), Expect = 3e-27
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 66  ETGGFPGASIIQSQIKSGVSRKRTGLT--STGVPIRPGYEIFNAN-DQRVGAITSGCPSP 122
           +   F G + +  +   GV RK  GL     G  +R G  + +A+ +  VG +TSG  SP
Sbjct: 270 DKDDFIGKAALLREKAKGVRRKLVGLKLDDKGPVLRGGEPVLDADGEVEVGEVTSGTFSP 329

Query: 123 SLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYH 168
           +L K+IA+ Y++  Y+K G EL V +R KRV  +V K PF      
Sbjct: 330 TLGKSIALAYVDSDYAKPGTELEVEIRGKRVPARVVKPPFYDPEGE 375

Length = 379

>gnl|CDD|234742 PRK00389, gcvT, glycine cleavage system aminomethyltransferase T; Reviewed

 Score = 99.4 bits (249), Expect = 2e-25
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 7/104 (6%)

Query: 66  ETGGFPGASIIQSQIKSGVSRKRTGLTST--GVPIRPGYEIFNANDQRVGAITSGCPSPS 123
           E   F G   +++Q ++GV RK  GL     G+P R GY +  A+ + +G +TSG  SP+
Sbjct: 260 EKRDFIGREALEAQKEAGVERKLVGLELEERGIP-RHGYPVL-ADGEEIGEVTSGTFSPT 317

Query: 124 LKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNY 167
           L K+IA+ Y+       G E+ V +R K+V  KV K PF++   
Sbjct: 318 LGKSIALAYVPAGV---GDEVEVEIRGKQVPAKVVKPPFVRRGK 358

Length = 359

>gnl|CDD|233010 TIGR00528, gcvT, glycine cleavage system T protein

 Score = 90.7 bits (225), Expect = 4e-22
 Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 4/107 (3%)

Query: 62  KRRRETGGFPGASIIQSQIKSGVSRKRTGL--TSTGVPIRPGYEIFNAN-DQRVGAITSG 118
            + R+   F G +++  Q ++G  +K  GL     G+  R GY IF  N +  VG +TSG
Sbjct: 257 SKSRQKYDFIGRAVLMEQKENGTEKKLVGLEMLEKGIA-RNGYPIFLPNGETEVGIVTSG 315

Query: 119 CPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKS 165
             SP+L KNI + Y+   Y K+G +L V+VR+K   +KV KMPF+++
Sbjct: 316 TASPTLGKNIGLAYVPKEYHKIGTKLLVQVRNKFYPIKVVKMPFVRT 362

The glycine cleavage system T protein (GcvT) is also known as aminomethyltransferase (EC 2.1.2.10). It works with the H protein (GcvH), the P protein (GcvP), and lipoamide dehydrogenase. The reported sequence of the member from Aquifex aeolicus starts about 50 residues downstream of the start of other members of the family (perhaps in error); it scores below the trusted cutoff. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide [Energy metabolism, Amino acids and amines]. Length = 362

>gnl|CDD|237113 PRK12486, dmdA, putative dimethyl sulfoniopropionate demethylase; Reviewed

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 104 IFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPF 162
              A D RVG +TS   SP  + N+A+G +   +   G  L V   D      V +  +
Sbjct: 309 PLLAGDNRVGQVTSAAYSPDFQTNVAIGMVRMTHWDPGTGLEVETPDGMRPATVREGFW 367

Length = 368

>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 92  TSTGVPIRPGYEIFNANDQR-----VGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWV 146
                 +  G  I   + +       G +TS   SP+L + IA+  ++   ++ G  ++V
Sbjct: 900 LDPQRRLPEGAHIVADDAEAIPMNMQGHVTSSYFSPALGRTIALALVKGGRARHGETVYV 959

Query: 147 RVRDKRVDVKVTKMPF 162
               + + V++    F
Sbjct: 960 PDLGRFIAVEICDPVF 975

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 985

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
COG0404	379	GcvT Glycine cleavage system T protein (aminomethy	99.97
PRK13579	370	gcvT glycine cleavage system aminomethyltransferas	99.96
PLN02319	404	aminomethyltransferase	99.95
PRK12486	368	dmdA putative dimethyl sulfoniopropionate demethyl	99.95
PF08669	95	GCV_T_C: Glycine cleavage T-protein C-terminal bar	99.93
KOG2770|consensus	401		99.93
TIGR00528	361	gcvT glycine cleavage system T protein. Eukaryotic	99.92
PRK00389	359	gcvT glycine cleavage system aminomethyltransferas	99.92
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.92
KOG2844|consensus	856		99.87
PRK09559	327	putative global regulator; Reviewed	99.35
TIGR03317	67	ygfZ_signature folate-binding protein YgfZ. YgfZ i	99.08
COG0354	305	Predicted aminomethyltransferase related to GcvT [	98.44
KOG2929|consensus	348		97.7
PF02470	81	MCE: mce related protein; InterPro: IPR003399 This	86.32
PRK10807	547	paraquat-inducible protein B; Provisional	81.99

>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]

Probab=99.97  E-value=4.2e-30  Score=226.34  Aligned_cols=135  Identities=30%  Similarity=0.402  Sum_probs=118.8

Q ss_pred             cccccccccchhhhccCCChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC--CCCCCCCEEEcCCC
Q psy12057         32 MAIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG--VPIRPGYEIFNAND  109 (172)
Q Consensus        32 ~~~~~s~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~--~~~~~g~~V~~~dg  109 (172)
                      +|.+.-+++-++.+  +.+|+|+||+|+|+++|   .|||||+||++++++|++|++|||.+++  .++++|++|+..+|
T Consensus       241 lE~g~~l~g~d~~~--~~~P~eagl~~~v~~~k---~dFiGk~al~~~k~~g~~r~lVgl~~~~~~~~~~~g~~v~~~~g  315 (379)
T COG0404         241 LEAGLRLYGQDLDE--TITPLEAGLGWAVKLDK---DDFIGKAALLREKAKGVRRKLVGLKLDDKGPVLRGGEPVLDADG  315 (379)
T ss_pred             hhcCccccccccCC--CCCHhhcCcceEecCCC---cCCcCHHHHHhhhhcCCceEEEEEEEcCCCCCCCCCCeEEecCC
Confidence            44444555555555  33699999999999987   4999999999999988877899999987  47899999994478


Q ss_pred             c-EEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCCC
Q psy12057        110 Q-RVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPP  171 (172)
Q Consensus       110 ~-~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~~  171 (172)
                      + .||+|||++|||+||++||||||+.+++..|++++|++++++++|+|+..|||||+++|+.
T Consensus       316 ~~~vG~VTSg~~Sptlg~~IAla~v~~~~~~~G~~~~v~i~~~~~~a~V~~~pf~dp~~~r~~  378 (379)
T COG0404         316 EVEVGEVTSGTFSPTLGKSIALAYVDSDYAKPGTELEVEIRGKRVPARVVKPPFYDPEGERLR  378 (379)
T ss_pred             CEeEEEEeeccccccCCCeeEEEEechhhccCCcEEEEEECCeEEEEEEecCCCcCccccccC
Confidence            8 4999999999999999999999999999999999999999999999999999999999863

>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional

Probab=99.96  E-value=5.2e-28  Score=211.67  Aligned_cols=121  Identities=36%  Similarity=0.658  Sum_probs=109.8

Q ss_pred             CChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCCCcEEEEEEeeecccccCCe
Q psy12057         49 AMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKN  127 (172)
Q Consensus        49 dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~  127 (172)
                      ++|+|+||+|+|++.|.+|+||+|||++++++..|..||+++|.+++ .++..|++|+..+|+.||+|||++|||+++++
T Consensus       249 ~~P~E~gL~~~v~~~~~~KgcyiGqEalar~~~~G~~kr~v~l~~~~~~~~~~g~~v~~~~g~~VG~VtS~~~sp~l~~~  328 (370)
T PRK13579        249 TTPVEAALEWAIQKARREAGGFPGAKAILAALAKGASRRRVGLKPEGRAPVREGAPLFDDAGTEIGTVTSGGFGPSVGGP  328 (370)
T ss_pred             CCHHHCCccceecCCCCCCCCCcCHHHHHHHHhcCCCeEEEEEEECCccCCCCCCEEEcCCCceEEEEeecCcchhcCCe
Confidence            36999999999998654468999999999999889999999999986 56778999995236999999999999999999


Q ss_pred             EEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCC
Q psy12057        128 IAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT  169 (172)
Q Consensus       128 Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r  169 (172)
                      ||||||+.+++.+|++|+|++.|++++|+|+..||++++++|
T Consensus       329 iala~v~~~~~~~g~~v~v~~~g~~~~a~v~~~Pf~~~~~~~  370 (370)
T PRK13579        329 VAMGYVPASLAAPGTAVFAEVRGKRLPVTVHALPFVPHRYKR  370 (370)
T ss_pred             EEEEEEChhhcCCCCEEEEEECCEEEEEEEEcCCcccCCccC
Confidence            999999999999999999999999999999999999998765

>PLN02319 aminomethyltransferase

Probab=99.95  E-value=9.6e-28  Score=212.46  Aligned_cols=122  Identities=48%  Similarity=0.784  Sum_probs=108.8

Q ss_pred             ChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecCCCCCCCCEEEcCCCcEEEEEEeeecccccCCeEE
Q psy12057         50 MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIA  129 (172)
Q Consensus        50 tP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~Ia  129 (172)
                      +|+|+||+|+|+..+.+|+||||||++++++..|++|++++|..++.+++.|++|+..+|+.||.|||++|||+++++||
T Consensus       283 ~P~EagL~~~v~~~~~~Kg~fiGqEalar~~~~g~~rrlvgl~~~~~~~~~g~~v~~~~g~~VG~VTS~~~Sp~l~~~Ia  362 (404)
T PLN02319        283 TPVEAGLAWTIGKRRRAEGGFLGADVILKQLKEGVSRRRVGFISSGAPARSHSEILDESGEKIGEVTSGGFSPCLKKNIA  362 (404)
T ss_pred             CHHHCCccceecccccCCCCCcCHHHHHHHHhcCCCeEEEEEEECCccCCCCCEEEeCCCCEEEEEeeecccccCCceEE
Confidence            69999999999843212579999999999988899999999965445668899888557999999999999999999999


Q ss_pred             EEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCCC
Q psy12057        130 MGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPP  171 (172)
Q Consensus       130 la~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~~  171 (172)
                      ||||+.+++.+|++++|+++|+.++|+|+..||+++.+.++|
T Consensus       363 la~v~~~~~~~g~~v~v~~~g~~~~a~v~~~Pf~~~~~~~~~  404 (404)
T PLN02319        363 MGYVKSGFHKAGTEVKVEVRGKMYDAVVTKMPFVPTKYYKPP  404 (404)
T ss_pred             EEEEChhhcCCCCEEEEEECCeEEEEEEECCCCcCcccCCCC
Confidence            999999999999999999999999999999999999987765

>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed

Probab=99.95  E-value=2.5e-27  Score=207.72  Aligned_cols=128  Identities=20%  Similarity=0.192  Sum_probs=108.1

Q ss_pred             ccccccccccchhhhccCCChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCCCC--CCEEEcC
Q psy12057         31 SMAIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRP--GYEIFNA  107 (172)
Q Consensus        31 ~~~~~~s~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~--g~~V~~~  107 (172)
                      .+|.+.-.+..++.+  +.+|+|+||+|+|+++|  +.|||||+||+++++++++||||+|.+++ .+++.  +++|+. 
T Consensus       238 RlE~G~~~~g~D~~~--~~~P~EagL~~~v~~~k--~~~FiGkeal~r~~~~g~~rrlvgl~~~~~~~~~~~~~~~V~~-  312 (368)
T PRK12486        238 RIEGGLLSYGNDMTR--DNTPHECGLGRFCNTQT--DIGCIGKDALLRVAKEGPQKQIRGIKIGGERIPPCDRAWPLLA-  312 (368)
T ss_pred             HHhcccccccccCCC--CCChHHCCCceEEcCCC--CCCCcCHHHHHHHHhcCCCeEEEEEEECCCCCCCcCCceEEee-
Confidence            344444444444433  34799999999999987  24899999999998888999999999987 34542  367884 


Q ss_pred             CCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCc
Q psy12057        108 NDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFL  163 (172)
Q Consensus       108 dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~  163 (172)
                      +|+.||+|||++|||+++++||||||+.+++.+|++|+|++.++.++|+|+.+||+
T Consensus       313 ~g~~VG~vTS~~~sp~l~~~Iala~v~~~~~~~g~~l~v~~~~~~~~a~v~~~Pf~  368 (368)
T PRK12486        313 GDNRVGQVTSAAYSPDFQTNVAIGMVRMTHWDPGTGLEVETPDGMRPATVREGFWI  368 (368)
T ss_pred             CCeEEEEEeccCcCcccCceEEEEEEChhhcCCCCEEEEEECCceEEEEEeCCCCC
Confidence            89999999999999999999999999999888999999999999999999999996

>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=99.93  E-value=1.5e-25  Score=161.13  Aligned_cols=93  Identities=42%  Similarity=0.694  Sum_probs=83.9

Q ss_pred             CCCccHHHHHHhHhcCCC-EEEEEEEecC-CCCCCCCEEEcCCCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEE
Q psy12057         68 GGFPGASIIQSQIKSGVS-RKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELW  145 (172)
Q Consensus        68 ~dFIGkeAL~~~~~~g~~-r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~  145 (172)
                      +|||||+||++++.+|.. |+||+|.+++ .+++.|++|+..+|+.||+|||++|||+++++||||||+.+++.+|++++
T Consensus         1 gdfiG~eal~r~~~~g~~rr~lv~l~~~~~~~~~~g~~v~~~~g~~vG~vTS~~~sp~~~~~Iala~v~~~~~~~g~~l~   80 (95)
T PF08669_consen    1 GDFIGQEALARQKARGVKRRRLVGLTLDGDAPPRGGEPVYDEDGKPVGRVTSGAYSPTLGKNIALAYVDREYAEPGTELE   80 (95)
T ss_dssp             S-STTHHHHHHHHHHTTS-EEEEEEEESSSS--STTCEEEETTTEEEEEEEEEEEETTTTEEEEEEEEEGGGGSTTSEEE
T ss_pred             CCcCCHHHHHHHHhcCCCceEEEEEEECCccCCCCCCEEEECCCcEEeEEEEEeECCCCCceEEEEEECHHHcCCCCEEE
Confidence            489999999999998884 9999999987 78999999995489999999999999999999999999999999999999


Q ss_pred             EEECCEEEeEEEEcC
Q psy12057        146 VRVRDKRVDVKVTKM  160 (172)
Q Consensus       146 V~i~g~~~~A~V~~~  160 (172)
                      |+++|+.++|+|+++
T Consensus        81 v~~~g~~~~a~v~~~   95 (95)
T PF08669_consen   81 VEIRGKRVPATVVKM   95 (95)
T ss_dssp             EEETTEEEEEEEE-S
T ss_pred             EEECCEEEEEEEeCc
Confidence            999999999999863

GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....

>KOG2770|consensus

Probab=99.93  E-value=1e-25  Score=194.36  Aligned_cols=136  Identities=42%  Similarity=0.691  Sum_probs=120.5

Q ss_pred             ccccccccchhhhccCCChhccccCccccCCCCCCCCCccHHHHHHhHhcC-CCEEEEEEEecC-CCCCCCCEEEcCCCc
Q psy12057         33 AIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGLTSTG-VPIRPGYEIFNANDQ  110 (172)
Q Consensus        33 ~~~~s~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g-~~r~LVgL~l~~-~~~~~g~~V~~~dg~  110 (172)
                      |++.-++..+|.+-++  |+||||.|.+...++.+.||.|.+.+++|.+.+ +.||+|||.+.+ .++|.|.+|+..+|+
T Consensus       263 eaGKOGyg~did~~~t--pvEa~L~W~i~krrR~~~~f~Ga~~I~~qLk~~~~~~RrvGl~~~~~p~ar~gs~I~~~~g~  340 (401)
T KOG2770|consen  263 EAGLCLYGSDIDEETT--PVEAGLSWVIGKRRRGTYDFPGAEVILKQLKDGGISRRRVGLNLSAKPPARSGSAIFVDDGT  340 (401)
T ss_pred             hcCCcccCcccccccC--hhhheeeeeeeeccccccCCCcHHHHHHHhhcCCcceEEEeeeccCCCCCCCCCeeEcCCCc
Confidence            4555566666666555  999999999988775555999999999998877 699999999987 778999999975589


Q ss_pred             EEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCC
Q psy12057        111 RVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTP  170 (172)
Q Consensus       111 ~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~  170 (172)
                      .||.|||++.||+++++||||||+..++++|+++.|.++++.++|+|+++||+..++++.
T Consensus       341 kVG~vTSg~~sptl~kniamgYV~k~~~~~Gtkv~v~vr~k~~~~~VskmPfV~t~yy~~  400 (401)
T KOG2770|consen  341 KVGQVTSGCPSPTLGKNIAMGYVKKGYHKIGTKVLVKVRNKLYPAEVSKMPFVPTNYYKS  400 (401)
T ss_pred             eEeeEccCCCCCCcccceeEEEeeccccCCCCEEEEEecCcccceEEEecccccccCCCC
Confidence            999999999999999999999999999999999999999999999999999999888764

>TIGR00528 gcvT glycine cleavage system T protein

Probab=99.92  E-value=8e-25  Score=190.64  Aligned_cols=114  Identities=32%  Similarity=0.503  Sum_probs=104.3

Q ss_pred             ChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCCC-cEEEEEEeeecccccCCe
Q psy12057         50 MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNAND-QRVGAITSGCPSPSLKKN  127 (172)
Q Consensus        50 tP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~dg-~~VG~VTSg~ySP~lgk~  127 (172)
                      +|+|+||+|++++++ +|+||+|||++++++..|..||+|++.+++ ..+..|++|+..+| +.||.|||++|||+++++
T Consensus       245 ~P~E~gl~~~v~~~f-kKgcy~GqE~lar~~~~G~~krlv~l~~~~~~~~~~g~~v~~~~g~~~vG~vtS~~~s~~~g~~  323 (361)
T TIGR00528       245 TPLEAGLGWTIAWEP-AKRDFIGRAVLEEQKENGTEKKLVGLEMLEKGIARNGYPVFFTNGNQHVGIVTSGTFSPTLGKN  323 (361)
T ss_pred             ChHHCCcccEEecCC-CCCCCcCHHHHHhHHhcCCCeEEEEEEECCCcCCCCCCEEEeCCCCeeEEEEeecCcchhcCce
Confidence            699999999999973 258999999999999889988899999876 66788999984255 999999999999999999


Q ss_pred             EEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcC
Q psy12057        128 IAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLK  164 (172)
Q Consensus       128 Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~d  164 (172)
                      ||||||+.+++.+|++|+|++.|++++|+|+..||++
T Consensus       324 iala~v~~~~~~~g~~~~v~~~g~~~~a~v~~~p~~~  360 (361)
T TIGR00528       324 IGLAYVPSETEKIGTTLIVQIRNKEYPIKVVKPPFVR  360 (361)
T ss_pred             EEEEEEChhhcCCCCEEEEEECCeEEEEEEecCCCcC
Confidence            9999999999999999999999999999999999986

Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.

>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed

Probab=99.92  E-value=3.3e-24  Score=186.13  Aligned_cols=122  Identities=30%  Similarity=0.417  Sum_probs=106.8

Q ss_pred             cccchhhhccCCChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCCCcEEEEEE
Q psy12057         38 SVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQRVGAIT  116 (172)
Q Consensus        38 ~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~VT  116 (172)
                      ....++.+  ..+|+|+||+|+|+++|  |+||+|||+++|++..|.+|+|++|.+++ ..+..|++|+ .+|+.||.||
T Consensus       236 ~~~~d~~~--~~~P~e~gl~~~v~~~~--Kgcy~GqE~var~~~~g~krrlv~l~~~~~~~~~~g~~v~-~~g~~vG~vt  310 (359)
T PRK00389        236 LYGQDMDE--TITPLEAGLGWTVKLEE--KRDFIGREALEAQKEAGVERKLVGLELEERGIPRHGYPVL-ADGEEIGEVT  310 (359)
T ss_pred             ccCccCCC--CCChHHcCcccEecCCC--CCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEe-eCCcEEEEEe
Confidence            33444444  23699999999999983  48999999999998888899999999975 6677899997 4899999999


Q ss_pred             eeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCC
Q psy12057        117 SGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNY  167 (172)
Q Consensus       117 Sg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~  167 (172)
                      |++|||.++++||||+|++++   |+.++|++.+++++|+|+..||+||.+
T Consensus       311 s~~~s~~~~~~iala~l~~~~---g~~~~v~~~~~~~~a~v~~~p~~~~~~  358 (359)
T PRK00389        311 SGTFSPTLGKSIALAYVPAGV---GDEVEVEIRGKQVPAKVVKPPFVRRGK  358 (359)
T ss_pred             ccCcccccCceEEEEEecCCC---CCEEEEEECCeEEEEEEecCCCcCCCC
Confidence            999999999999999999875   999999999999999999999999764

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.92  E-value=2.7e-24  Score=208.05  Aligned_cols=118  Identities=16%  Similarity=0.217  Sum_probs=106.9

Q ss_pred             ChhccccCccccCCCCCCCCCccHHHHHHhHh-cCCCEEEEEEEecC--CCCCCCCEEEcCC-----CcEEEEEEeeecc
Q psy12057         50 MDIYSRLLIFPGKRRRETGGFPGASIIQSQIK-SGVSRKRTGLTSTG--VPIRPGYEIFNAN-----DQRVGAITSGCPS  121 (172)
Q Consensus        50 tP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~-~g~~r~LVgL~l~~--~~~~~g~~V~~~d-----g~~VG~VTSg~yS  121 (172)
                      +|+|+||+|+|+++|   +|||||++|++++. .+++|+||||.+++  .+++.|++++..+     ++.||+|||++||
T Consensus       858 tP~E~gl~~~V~~~K---g~fiGqeal~r~~~~~~~krrlvgl~~~~~~~~~~~g~~v~~~~~~~~~~~~vG~VTS~~~s  934 (985)
T TIGR01372       858 TPADLGMGWMVSKKK---PDFVGRRMLAREDLVAEDRKQLVGLLPLDPQRRLPEGAHIVADDAEAIPMNMQGHVTSSYFS  934 (985)
T ss_pred             CHHHCCCcccccCCC---CCcCCHHHHHhHHhcCCCceEEEEEEEeCCCCCCCCCCEEEECCCcccCCCcEEEEeeeccc
Confidence            699999999999986   69999999998876 45699999999876  3677898887534     3789999999999


Q ss_pred             cccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCC
Q psy12057        122 PSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTP  170 (172)
Q Consensus       122 P~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~  170 (172)
                      |+++++||||||+.+++++|++|+|++.|+.++|+|+..|||||+++|+
T Consensus       935 p~lg~~iaLa~v~~~~~~~G~~v~v~~~g~~~~a~v~~~pf~dp~~~r~  983 (985)
T TIGR01372       935 PALGRTIALALVKGGRARHGETVYVPDLGRFIAVEICDPVFFDPEGTRL  983 (985)
T ss_pred             hhcCCeEEEEEECccccCCCCEEEEEECCEEEEEEEeccCCCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999986

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2844|consensus

Probab=99.87  E-value=3.6e-22  Score=184.19  Aligned_cols=116  Identities=22%  Similarity=0.276  Sum_probs=101.5

Q ss_pred             CCChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC--CCCCCCCEEEcCCCcEEEEEEeeecccccC
Q psy12057         48 LAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG--VPIRPGYEIFNANDQRVGAITSGCPSPSLK  125 (172)
Q Consensus        48 ~dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~--~~~~~g~~V~~~dg~~VG~VTSg~ySP~lg  125 (172)
                      ++||+|||+.|.|+|+|+  .|||||+||++|+++|++||||.|.+++  ..+..|++|+. ||+.||.+||++||.+++
T Consensus       724 d~tPlEaGl~f~vk~k~p--~dFiGk~ALeqqra~GlkkrlV~l~l~d~d~~~~G~E~I~r-nG~~VG~ttsa~Y~ytl~  800 (856)
T KOG2844|consen  724 DTTPLEAGLEFRVKLKKP--ADFIGKQALEQQKAEGLKKRLVCLTLDDHDPDPWGGEPIYR-NGQVVGNTTSAAYGYTLG  800 (856)
T ss_pred             CCChhhccceeEEecCCC--ccchhHHHHHHHHHhhhhheEEEEEecCCCCCccCCcceee-CCEEEeeeeeccceeeec
Confidence            448999999999999974  6999999999999999999999999998  44899999995 999999999999999999


Q ss_pred             CeEEEEEecC--------CccCCCCEEEEEECCEEEeEEEEcC-CCcCCCCC
Q psy12057        126 KNIAMGYIEP--------AYSKVGVELWVRVRDKRVDVKVTKM-PFLKSNYH  168 (172)
Q Consensus       126 k~Iala~V~~--------~~a~~G~~l~V~i~g~~~~A~V~~~-Pf~dp~~~  168 (172)
                      |.+++|||..        ++...| +++|++.|++++|++.-. || +|...
T Consensus       801 k~v~~gyV~n~~e~~V~~d~V~sg-~yEvdi~Gkry~a~~~l~sP~-~pt~~  850 (856)
T KOG2844|consen  801 KSVCLGYVHNFEEFPVSLDFVGSG-EYEVDIAGKRYPAKANLHSPS-LPTEK  850 (856)
T ss_pred             ceEEEEEecccccCccCHHHhcCC-cEEEEecccccceeEEecCCC-CCccc
Confidence            9999999994        343334 699999999999999877 55 44433

>PRK09559 putative global regulator; Reviewed

Probab=99.35  E-value=1.2e-11  Score=106.91  Aligned_cols=124  Identities=10%  Similarity=0.092  Sum_probs=89.2

Q ss_pred             ccccccccchhhhccCCChhccccC--ccccCCCCCCCCCccHHHHHHhHhcCC-CEEEEEEEecC-CCCCCCCEE--Ec
Q psy12057         33 AIKTSSVNTILLELFLAMDIYSRLL--IFPGKRRRETGGFPGASIIQSQIKSGV-SRKRTGLTSTG-VPIRPGYEI--FN  106 (172)
Q Consensus        33 ~~~~s~~~~~~~~~~~dtP~EaGLg--~~V~~~K~~~~dFIGkeAL~~~~~~g~-~r~LVgL~l~~-~~~~~g~~V--~~  106 (172)
                      +++.-.+...+.|.+  +|+|+||+  +.|+|+|   +||+|||++.|++..|. +|+++++.+++ ..++.|++|  +.
T Consensus       195 eaG~p~~g~e~~e~~--~Pqe~nL~~l~~Vsf~K---GCY~GQE~vAR~~~~G~~krrl~~l~~~~~~~~~~g~~i~~~~  269 (327)
T PRK09559        195 EAGFPVIDAANSGQF--IPQATNLQALGGISFKK---GCYTGQEMVARAKFRGANKRALWWLAGKASRVPEAGEDLELKM  269 (327)
T ss_pred             HcCCccccccccccc--CchhhChhhcCceeecC---cccccHHHHHHHHHcCCCceeEEEEecccccCCCCCCeeEEec
Confidence            333333444443333  59999999  4899986   89999999999887676 88899999886 667899965  33


Q ss_pred             CC-CcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcC
Q psy12057        107 AN-DQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLK  164 (172)
Q Consensus       107 ~d-g~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~d  164 (172)
                      .+ ++.||.|+|++-++. +...+++.++.+. ..++.+.+.-.+. -..++.++|+--
T Consensus       270 ~~~~~~~G~v~s~~~~~~-~~~~~l~v~~~~~-~~~~~l~~~~~~~-~~~~~~~lPy~~  325 (327)
T PRK09559        270 GENWRRTGTVLAAVQLDD-GQVWVQVVMNNDL-EADSVFRVRDDAG-NTLHIQPLPYSL  325 (327)
T ss_pred             CCCCceeEEEEEEEECCC-CCEEEEEEEecCc-CCCceEEEccCCC-CeeEecCCCCCC
Confidence            23 579999999988766 6677778888765 5566666643221 347788888754

>TIGR03317 ygfZ_signature folate-binding protein YgfZ

Probab=99.08  E-value=1.4e-10  Score=78.83  Aligned_cols=40  Identities=18%  Similarity=0.196  Sum_probs=36.9

Q ss_pred             ChhccccCc--cccCCCCCCCCCccHHHHHHhHhcC-CCEEEEEEE
Q psy12057         50 MDIYSRLLI--FPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGLT   92 (172)
Q Consensus        50 tP~EaGLg~--~V~~~K~~~~dFIGkeAL~~~~~~g-~~r~LVgL~   92 (172)
                      +|+|+||+|  +|+++|   +||||||++++++..| ++|+||+|.
T Consensus        24 ~P~E~gl~~~~~v~~~K---g~yiGqe~l~r~~~~g~~~~~lv~l~   66 (67)
T TIGR03317        24 LPQELNLDALGGVSFKK---GCYVGQEVVARMHYRGKVKRRLVRLR   66 (67)
T ss_pred             CHhHcCCCccCcEeCCC---CCccCHHHHHHHHHcCCCceeEEEee
Confidence            799999999  999987   6999999999998888 699999986

YgfZ is a protein from Escherichia coli, homologous to the glycine cleavage system T protein, or aminomethyltransferase, GcvT (TIGR00528). Homologs of YgfZ other than members of the GcvT family share a well-conserved signature region that includes the motif, KGCYxGQE. Elsewhere, sequence diverge and length variation are substantial. Members of this family are mostly bacterial, largely absent from the Firmicutes and otherwise usually present. A few eukaryotic examples are found among the Apicomplexa, and a few archaeal sequences are found. Two functions implicated for this folate-binding protein are RNA modification (a function likely to be conserved) and replication initiation (a function likely to be highly variable). Many members of this family are, at the time of construction of this model, misnamed as the glycine cleavage system T protein.

>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]

Probab=98.44  E-value=2.9e-07  Score=79.65  Aligned_cols=96  Identities=16%  Similarity=0.136  Sum_probs=72.4

Q ss_pred             hhhhccCC--ChhccccCcc--ccCCCCCCCCCccHHHHHHhHhcCC-CEEEEEEEecCCCCCCCCEEEcCCCcE--EEE
Q psy12057         42 ILLELFLA--MDIYSRLLIF--PGKRRRETGGFPGASIIQSQIKSGV-SRKRTGLTSTGVPIRPGYEIFNANDQR--VGA  114 (172)
Q Consensus        42 ~~~~~~~d--tP~EaGLg~~--V~~~K~~~~dFIGkeAL~~~~~~g~-~r~LVgL~l~~~~~~~g~~V~~~dg~~--VG~  114 (172)
                      .+.++..+  .|.|+||...  |+|+|   +||+|+|.+.|.+..|. +|+++.|.+++..+..|+.|. .+++.  +|.
T Consensus       180 ~~~~~~~~~~iPqevnl~~~~gISF~K---GCYvGQE~VAR~~~rG~~kRrl~~l~~d~~~p~~g~~i~-a~~~~~~~G~  255 (305)
T COG0354         180 GIDDATSEDFIPQEVNLDALGGISFKK---GCYVGQETVARAKYRGTNKRRLVLLALDASLPEAGEEIL-AGGEEVGLGT  255 (305)
T ss_pred             cccchhccccChhhhCccccCcEeccC---cccccHHHhhHHHhcCCCceeEEEEEeCCCCCCCCCeee-cCCCcceeee
Confidence            34444433  6999998875  59986   89999999999888775 888999998865678999998 48888  899


Q ss_pred             EEeeecccccCCeEEEEEecCCccCCCCEEEE
Q psy12057        115 ITSGCPSPSLKKNIAMGYIEPAYSKVGVELWV  146 (172)
Q Consensus       115 VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V  146 (172)
                      |+|..    -...+|+++++. ....|..+++
T Consensus       256 v~s~~----~~~~~~l~~l~~-~l~~~~~~~v  282 (305)
T COG0354         256 VLSAV----GLGPVALIRLKV-VLDNGLAIDV  282 (305)
T ss_pred             EEecc----cCcchhHHHHHH-hhcccchhhh
Confidence            99873    122388999998 4445555433

>KOG2929|consensus

Probab=97.70  E-value=5.8e-05  Score=65.57  Aligned_cols=105  Identities=14%  Similarity=0.184  Sum_probs=72.0

Q ss_pred             ChhccccCc--cccCCCCCCCCCccHHHHHHhHhcCC-CEEEEEEEecC---CCC-----CCCCEEEcCCCcEEEEEEee
Q psy12057         50 MDIYSRLLI--FPGKRRRETGGFPGASIIQSQIKSGV-SRKRTGLTSTG---VPI-----RPGYEIFNANDQRVGAITSG  118 (172)
Q Consensus        50 tP~EaGLg~--~V~~~K~~~~dFIGkeAL~~~~~~g~-~r~LVgL~l~~---~~~-----~~g~~V~~~dg~~VG~VTSg  118 (172)
                      .|+|++++|  .|+|+|   +||+|+|-..|--..|+ ++|++.|.++.   .+.     .....|....|+.+|.+.|+
T Consensus       223 lPLE~N~d~lngISf~K---GCYVGQELTARThhtGViRKRl~P~r~~~~e~~p~~~~~~~~~~~v~~~~g~kvG~~~~~  299 (348)
T KOG2929|consen  223 LPLESNFDFLNGISFDK---GCYVGQELTARTHHTGVIRKRLFPFRLDLAENEPLLVGFTNAPPEVEKKKGRKVGRVISG  299 (348)
T ss_pred             cceeccccccccccccC---cceechhheehhhhcceeeeeeeeEEecccCCCccccCCCCCccceecccCceeeeeecc
Confidence            489999887  689997   89999997777666787 78999999932   222     23344555578999999997


Q ss_pred             ecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCC
Q psy12057        119 CPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKS  165 (172)
Q Consensus       119 ~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp  165 (172)
                            ...-|||.+..+... +.-.+..+.|..+.++.. .|++-|
T Consensus       300 ------~g~~glgllr~e~~~-~~~~~l~~~g~~i~i~~~-~p~W~p  338 (348)
T KOG2929|consen  300 ------EGLRGLGLLRLEKFK-AQFYKLTTKGENIKIKPQ-KPEWWP  338 (348)
T ss_pred             ------Ccceeeeeeehhhhh-ccchhhhccCccceeccC-CCcccc
Confidence                  345688888877643 333445555655554443 354433

>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]

Probab=86.32  E-value=8.2  Score=26.17  Aligned_cols=58  Identities=17%  Similarity=0.102  Sum_probs=43.0

Q ss_pred             EEEEecC-CCCCCCCEEEcCCCcEEEEEEeeecccccCCeEEEEEecCCc---cCCCCEEEEE
Q psy12057         89 TGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAY---SKVGVELWVR  147 (172)
Q Consensus        89 VgL~l~~-~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~---a~~G~~l~V~  147 (172)
                      +.+..++ .-+..|.+|.. .|-.||.|++-.+++.-++...-..|++++   ...+....|.
T Consensus         5 v~~~~~~~~GL~~gs~V~~-~Gv~VG~V~~i~l~~~~~~v~v~~~i~~~~~~~i~~~s~a~i~   66 (81)
T PF02470_consen    5 VTVYFDDAGGLSVGSPVRY-RGVEVGKVTSIELDPDGNRVRVTLRIDPDYWHRIPDDSRASIR   66 (81)
T ss_pred             EEEEECCcCCCCCcCEEEE-CCEEEEEEEEEEEcCCCCEEEEEEEEcCCcceecCCCcEEEEE
Confidence            4455555 45678899984 899999999999988888888888888887   2334444444

The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.

>PRK10807 paraquat-inducible protein B; Provisional

Probab=81.99  E-value=7.1  Score=36.55  Aligned_cols=59  Identities=20%  Similarity=0.211  Sum_probs=48.5

Q ss_pred             EEEEEecC-CCCCCC-CEEEcCCCcEEEEEEeeecccccCCeEEEEEecCCc---cCCCCEEEEE
Q psy12057         88 RTGLTSTG-VPIRPG-YEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAY---SKVGVELWVR  147 (172)
Q Consensus        88 LVgL~l~~-~~~~~g-~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~---a~~G~~l~V~  147 (172)
                      .+.+..++ .-+..| .+|+. .|-.||.|++..+++...+-+.-++|++++   ...++.++|.
T Consensus        45 ~itl~~~~a~gl~~GkT~I~y-rgv~VG~V~~v~l~~d~~~V~~~~~i~~~~~~ll~~~trFWvv  108 (547)
T PRK10807         45 EVTLITTNAEGIEAGKTTIKS-RSVDVGVVESVTLSDDLTHVEIKARLNSGMEKLLHKDSVFWVV  108 (547)
T ss_pred             EEEEEECCCCCcCcCCceeEE-CCceEEEEEEEEECCCCCeEEEEEEECccHHHhhcCCCEEEEe
Confidence            45666665 446677 89985 899999999999999999999999999876   4678888775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
1wsr_A	375	Crystal Structure Of Human T-Protein Of Glycine Cle		3e-23
3gir_A	393	Crystal Structure Of Glycine Cleavage System Aminom		1e-09
1yx2_A	365	Crystal Structure Of The Probable Aminomethyltransf		1e-08
1v5v_A	401	Crystal Structure Of A Component Of Glycine Cleavag		4e-06
1woo_A	364	Crystal Structure Of T-Protein Of The Glycine Cleav		1e-04

>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage System Length = 375

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 64/109 (58%)
Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR    FPGA +I  Q+K  V R+R GL   G P+R    I N    ++G +TSGCP
Sbjct: 265 GKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCP 324
Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNYHT 169
           SPSLKKN+AMGY+   YS+ G  L             +KMPF+ +NY+T
Sbjct: 325 SPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYT 373

>pdb|3GIR|A Chain A, Crystal Structure Of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae Length = 393

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 62  KRRRETGGFPGASIIQSQIKSGVSRKRTGLT-STGVPIRPGYEIFNANDQRVGAITSGCP 120
           K  RE   F GA      ++ G SR R GL   T  PIR G  +F+    R+G +TSG  
Sbjct: 284 KNVREKAQFYGAKAFLESLQKGPSRCRVGLKPQTRQPIRAGAVLFDNEGNRIGVVTSGGF 343
Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWXXXXXXXXXXXXTKMPFLKSNY 167
            PS    +AMGY+  A+   G E++              +PF++  Y
Sbjct: 344 GPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKIALSVHSLPFVEQRY 390

>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase From Bacillus Subtilis Length = 365

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 59  FPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLT--STGVPIRPGYEIFNANDQRVGAIT 116
           F  K ++E+  F G S++  Q ++G  RK  GL     G+P R GYE+F  N + VG +T
Sbjct: 260 FAVKHKKESD-FFGKSVLSEQKENGAKRKLVGLEXIEKGIP-RHGYEVFQ-NGKSVGKVT 316
Query: 117 SGCPSPSLKKNIAMGYIEPAYSKVG 141
           +G  SP+L KN+ +  I+   S++G
Sbjct: 317 TGTQSPTLGKNVGLALIDSETSEIG 341

>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5 A Resolution Length = 401

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 70  FPGASIIQSQIKSGVSRK--RTGLTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKN 127
           F G   +  Q + GV RK     +   G+P R GY+++ AN + +G +TSG  SP L   
Sbjct: 297 FIGKDALLKQKERGVGRKLVHFKMIDKGIP-REGYKVY-ANGEMIGEVTSGTLSPLLNVG 354
Query: 128 IAMGYIEPAYSKVGVEL 144
           I + +++  Y+K G+E+
Sbjct: 355 IGIAFVKEEYAKPGIEI 371

>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage System Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 79  QIKSGVSRKRTGLTSTGVPI-RPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAY 137
           + K  V RK   L  +G  I R GYE+   N +RVG ITSG  SP+L K+IA+  +  + 
Sbjct: 272 KAKEKVERKLVALELSGKRIARKGYEVLK-NGERVGEITSGNFSPTLGKSIALALVSKSV 330
Query: 138 SKVGVEL 144
            K+G +L
Sbjct: 331 -KIGDQL 336

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
1wsr_A	375	Aminomethyltransferase; glycine-cleavage sytem; 2.	8e-55
3gir_A	393	Aminomethyltransferase; glycine cleavage system, a	3e-51
1v5v_A	401	Aminomethyltransferase; glycine-cleavage sytem, st	7e-37
1yx2_A	365	Aminomethyltransferase; glycine cleavage system T	4e-35
3ttg_A	355	Putative aminomethyltransferase; structural genomi	8e-31
1vlo_A	381	Aminomethyltransferase; NP417381, tetrahydrofolat	5e-30
3tfi_A	369	GCVT-like aminomethyltransferase protein; demethyl	6e-29
1wos_A	364	Aminomethyltransferase; T-protein; 1.84A {Thermoto	5e-28
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	3e-12
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	5e-10

>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Length = 375

 Score =  176 bits (449), Expect = 8e-55
 Identities = 55/110 (50%), Positives = 70/110 (63%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCP 120
           GKRRR    FPGA +I  Q+K  V R+R GL   G P+R    I N    ++G +TSGCP
Sbjct: 265 GKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCP 324

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTP 170
           SPSLKKN+AMGY+   YS+ G  L V VR K+    V+KMPF+ +NY+T 
Sbjct: 325 SPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYTL 374

>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Length = 393

 Score =  167 bits (426), Expect = 3e-51
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 1/109 (0%)

Query: 61  GKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGC 119
            K  RE   F GA      ++ G SR R GL      PIR G  +F+    R+G +TSG 
Sbjct: 283 PKNVREKAQFYGAKAFLESLQKGPSRCRVGLKPQTRQPIRAGAVLFDNEGNRIGVVTSGG 342

Query: 120 PSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYH 168
             PS    +AMGY+  A+   G E++  +R K++ + V  +PF++  Y 
Sbjct: 343 FGPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKIALSVHSLPFVEQRYF 391

>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401

 Score =  130 bits (328), Expect = 7e-37
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 69  GFPGASIIQSQIKSGVSRKRTGLTSTGVPI-RPGYEIFNANDQRVGAITSGCPSPSLKKN 127
            F G   +  Q + GV RK          I R GY+++ AN + +G +TSG  SP L   
Sbjct: 296 DFIGKDALLKQKERGVGRKLVHFKMIDKGIPREGYKVY-ANGEMIGEVTSGTLSPLLNVG 354

Query: 128 IAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT 169
           I + +++  Y+K G+E+ V +R +R        PF     + 
Sbjct: 355 IGIAFVKEEYAKPGIEIEVEIRGQRKKAVTVTPPFYDPKKYG 396

>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365

 Score =  124 bits (315), Expect = 4e-35
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 4/104 (3%)

Query: 63  RRRETGGFPGASIIQSQIKSGVSRKRTGLTST--GVPIRPGYEIFNANDQRVGAITSGCP 120
           + ++   F G S++  Q ++G  RK  GL     G+P R GYE+F  N + VG +T+G  
Sbjct: 263 KHKKESDFFGKSVLSEQKENGAKRKLVGLEMIEKGIP-RHGYEVF-QNGKSVGKVTTGTQ 320

Query: 121 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLK 164
           SP+L KN+ +  I+   S++G  + V +R K V  KV K PF K
Sbjct: 321 SPTLGKNVGLALIDSETSEIGTVVDVEIRKKLVKAKVVKTPFYK 364

>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Length = 355

 Score =  113 bits (284), Expect = 8e-31
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 68  GGFPGASIIQSQIKSG-VSRKRTGLTSTGVPI-RPGYEIF---NANDQRVGAITSGCPSP 122
           G + G   +      G ++R   G    G P  +  + +      +    G +T    S 
Sbjct: 258 GCYVGQEPVTRLKFQGHLNRSLAGFRLEGGPFPKMEFPVTLFNPKDGNEAGILTRTSSSD 317

Query: 123 SLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFL 163
            L   I +GYI+  +S+ G EL +        V+V  +PF+
Sbjct: 318 ILGSGIGLGYIKRNFSENGTELLL---PDAQLVRVHSLPFV 355

>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Length = 381

 Score =  111 bits (281), Expect = 5e-30
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 62  KRRRETGGFPGASIIQSQIKSGVSRKRTGLTST--GVPIRPGYEIFN---ANDQRVGAIT 116
                   F G   ++ Q + G   K  GL  T  GV  R    +       +Q  G IT
Sbjct: 268 AWEPADRDFIGREALEVQREHGT-EKLVGLVMTEKGVL-RNELPVRFTDAQGNQHEGIIT 325

Query: 117 SGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKS 165
           SG  SP+L  +IA+  +       G    V++R++ + VKVTK  F+++
Sbjct: 326 SGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFVRN 371

>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Length = 369

 Score =  108 bits (272), Expect = 6e-29
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 70  FPGASIIQSQIKSGVSRKRTGLTSTGVPI-RPGYE-IFNANDQRVGAITSGCPSPSLKKN 127
           F G   ++     G  +K  G+      I   G + I++ N+  +G + S C SP  +K 
Sbjct: 274 FLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSKNIYDENNNVIGELRSACYSPHFQKV 333

Query: 128 IAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFL 163
           I +  I+ ++ +      +++ D  ++  V  +PF+
Sbjct: 334 IGIAMIKKSHWEASQGFKIQINDNTINGNVCDLPFI 369

>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Length = 364

 Score =  106 bits (266), Expect = 5e-28
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 69  GFPGASIIQSQIKSGVSRKRTGLTST--GVPIRPGYEIFNANDQRVGAITSGCPSPSLKK 126
            F G   +    K  V RK   L  +   +  R GYE+   N +RVG ITSG  SP+L K
Sbjct: 263 DFVGKEALLKA-KEKVERKLVALELSGKRIA-RKGYEVLK-NGERVGEITSGNFSPTLGK 319

Query: 127 NIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNY 167
           +IA+  +  +         V    K V+  V K PF + + 
Sbjct: 320 SIALALVSKSVKIGDQLGVVFPGGKLVEALVVKKPFYRGSV 360

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 64  RRETGGFPGASIIQSQIKSGVSRKRTGLT-STGVPIRPGYE-IFNANDQRVGAITSGCPS 121
           +     F G   ++ + +   +R+   LT   G  I  G E +F   +Q VG +TS    
Sbjct: 722 KMAKESFIGKGALEGRTEEASARRLRCLTIDDGRSIVLGKEPVF-YKEQAVGYVTSAAYG 780

Query: 122 PSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPF 162
            ++ K IA  Y+ P    VG  + +    +R+   VT+ P 
Sbjct: 781 YTVAKPIAYSYL-PGTVSVGDSVDIEYFGRRITATVTEDPL 820

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 56.5 bits (136), Expect = 5e-10
 Identities = 15/65 (23%), Positives = 27/65 (41%)

Query: 98  IRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKV 157
           +              G +TS   SP+L +   +  I+   +++G  L   V D+ VDV V
Sbjct: 891 VASDALASEGITPMEGWVTSSYDSPNLGRTFGLALIKNGRNRIGEVLKTPVGDQLVDVVV 950

Query: 158 TKMPF 162
           ++   
Sbjct: 951 SETVL 955

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
3gir_A	393	Aminomethyltransferase; glycine cleavage system, a	99.97
3tfi_A	369	GCVT-like aminomethyltransferase protein; demethyl	99.96
1yx2_A	365	Aminomethyltransferase; glycine cleavage system T	99.95
1wsr_A	375	Aminomethyltransferase; glycine-cleavage sytem; 2.	99.95
1v5v_A	401	Aminomethyltransferase; glycine-cleavage sytem, st	99.94
1wos_A	364	Aminomethyltransferase; T-protein; 1.84A {Thermoto	99.94
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.94
1vlo_A	381	Aminomethyltransferase; NP417381, tetrahydrofolat	99.94
3ttg_A	355	Putative aminomethyltransferase; structural genomi	99.93
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.91
1vly_A	338	SPOT PR51, unknown protein from 2D-PAGE; structura	99.87
3l48_A	94	Outer membrane usher protein PAPC; IG fold, greek	87.22

>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}

Probab=99.97  E-value=2.1e-30  Score=227.68  Aligned_cols=136  Identities=29%  Similarity=0.464  Sum_probs=119.2

Q ss_pred             ccccccccchhhhccCCChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCCCcE
Q psy12057         33 AIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQR  111 (172)
Q Consensus        33 ~~~~s~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~dg~~  111 (172)
                      |++.-.+..++.+  +.+|+|+||+|+|+++|++|+||||||+|++++..|++|+||+|.+++ .+++.|++|++.+|+.
T Consensus       257 EaG~p~~g~dl~~--~~~P~EagL~~~V~~~k~~Kg~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~~~G~~v~~~~g~~  334 (393)
T 3gir_A          257 EAGLCLHGNDITP--DTTPIDAALTWAVPKNVREKAQFYGAKAFLESLQKGPSRCRVGLKPQTRQPIRAGAVLFDNEGNR  334 (393)
T ss_dssp             HTTCCCBTTTBCT--TCCTTTTTCGGGSCHHHHHHCCSTTHHHHHHHHHHCCSSEEEEEEESSSSCCCTTCEEECTTSCE
T ss_pred             hcCcccchhhcCC--CCCHHHCCchheecCCCCCCCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEEccCCeE
Confidence            3444555555554  336999999999999732136999999999998889999999999987 7889999998448999


Q ss_pred             EEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCC
Q psy12057        112 VGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTP  170 (172)
Q Consensus       112 VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~  170 (172)
                      ||+|||++|||+++++||||||+.+++++|++|+|+++|++++|+|++.||++++++|+
T Consensus       335 vG~VTS~~~sp~l~~~iaLa~v~~~~~~~G~~l~v~i~g~~~~a~v~~~PF~~~~~~~~  393 (393)
T 3gir_A          335 IGVVTSGGFGPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKIALSVHSLPFVEQRYFKG  393 (393)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCC-
T ss_pred             EEEEEEEEECCCCCcEEEEEEEcHHHcCCCCEEEEEECCEEEEEEEecCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999874

>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*

Probab=99.96  E-value=2.4e-29  Score=218.88  Aligned_cols=128  Identities=15%  Similarity=0.175  Sum_probs=111.1

Q ss_pred             ccccccccccchhhhccCCChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCC--CCCCEEEcC
Q psy12057         31 SMAIKTSSVNTILLELFLAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPI--RPGYEIFNA  107 (172)
Q Consensus        31 ~~~~~~s~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~--~~g~~V~~~  107 (172)
                      -+|++.-.+..++.+.  .+|+|+||+|+|+++|  ..||||||+|++++.+|++||||||.+++ .++  +.|++|+ .
T Consensus       239 RlEaG~~~~g~d~~~~--~~P~Eagl~~~V~~~K--g~~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~~~~~g~~v~-~  313 (369)
T 3tfi_A          239 RIESALLSYGNDFDNN--DNPFECGFDQYVSLDS--DINFLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSKNIYD-E  313 (369)
T ss_dssp             HHHTTCCCBTTTBCTT--CCGGGTTCGGGCCCSS--SCCCTTHHHHHHHHHHCCSEEEEEEEESSSCCCCCSCEEEEC-T
T ss_pred             HHhcCCCCccccCCCC--CChHHCCchhhccCCC--CCCCcCHHHHHHHHhcCCCeEEEEEEECCCCCCCcCCCCEEE-e
Confidence            3555555555555443  3699999999999986  23899999999999889999999999987 333  5788998 4


Q ss_pred             CCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCc
Q psy12057        108 NDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFL  163 (172)
Q Consensus       108 dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~  163 (172)
                      +|+.||+|||++|||+++++||||||+.+++++|++++|+++|++++|+|++.|||
T Consensus       314 ~g~~vG~VTS~~~sp~lg~~iala~v~~~~~~~G~~l~v~i~g~~~~a~v~~~Pf~  369 (369)
T 3tfi_A          314 NNNVIGELRSACYSPHFQKVIGIAMIKKSHWEASQGFKIQINDNTINGNVCDLPFI  369 (369)
T ss_dssp             TCCEEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSSCC
T ss_pred             CCeEEEEEEeeeECCCCCceEEEEEECHHHcCCCCEEEEEECCEEEEEEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999997

>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}

Probab=99.95  E-value=8.8e-28  Score=207.87  Aligned_cols=123  Identities=32%  Similarity=0.463  Sum_probs=108.2

Q ss_pred             ccccchhhhccCCChhccccCccccCCCCCCC-CCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCCCcEEEE
Q psy12057         37 SSVNTILLELFLAMDIYSRLLIFPGKRRRETG-GFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQRVGA  114 (172)
Q Consensus        37 s~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~-dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~  114 (172)
                      -.+..++.+  +.+|+|+||+|.|+|+|   + ||||||++++++..|++|++++|.+++ .+++.|++|+. +|+.||.
T Consensus       241 p~~g~d~~~--~~~P~e~~l~~~V~~~K---gc~yiGqe~lar~~~~g~~rrlv~l~~~~~~~~~~g~~v~~-~g~~vG~  314 (365)
T 1yx2_A          241 PLYGQELTR--DITPIEAGIGFAVKHKK---ESDFFGKSVLSEQKENGAKRKLVGLEMIEKGIPRHGYEVFQ-NGKSVGK  314 (365)
T ss_dssp             CCBTTTBST--TCCTTTTTCGGGCCTTC---SSCCTTHHHHHHHHHHCCSEEEEEEEESSSCCCCTTCEEEE-TTEEEEE
T ss_pred             CcCccccCC--CCCHHHCCccceecCCC---CCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEEE-CCeeEEE
Confidence            333444443  23799999999999986   6 499999999999889999999999987 78899999995 8999999


Q ss_pred             EEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCC
Q psy12057        115 ITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKS  165 (172)
Q Consensus       115 VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp  165 (172)
                      |||++|||+++++||||||+.+++++|++++|+++|++++|+|++.|||++
T Consensus       315 vtS~~~sp~~~~~iala~v~~~~~~~g~~~~v~~~g~~~~a~v~~~Pf~~~  365 (365)
T 1yx2_A          315 VTTGTQSPTLGKNVGLALIDSETSEIGTVVDVEIRKKLVKAKVVKTPFYKR  365 (365)
T ss_dssp             EEEEEEETTTTEEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECCCC---
T ss_pred             EEeccccCCCCceEEEEEEChHHcCCCCEEEEEECCEEEEEEEEcCCCCCC
Confidence            999999999999999999999998999999999999999999999999975

>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*

Probab=99.95  E-value=9.2e-28  Score=208.61  Aligned_cols=123  Identities=46%  Similarity=0.738  Sum_probs=110.3

Q ss_pred             CChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecCCCCCCCCEEEcCCCcEEEEEEeeecccccCCeE
Q psy12057         49 AMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNI  128 (172)
Q Consensus        49 dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~I  128 (172)
                      .+|+|+||+|+|+|+|++|+||||||++++++..|++||+|+|..++.+++.|++|++.+|+.||.|||++|||+++++|
T Consensus       253 ~~P~Eagl~~~V~~~~~~Kg~fiGqe~lar~~~~g~~rrlv~l~~~~~~~~~g~~v~~~~g~~vG~vtS~~~sp~lg~~i  332 (375)
T 1wsr_A          253 TTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNV  332 (375)
T ss_dssp             CCTTTTTCGGGSCHHHHHHTCSTTHHHHHHHHTTCCSCEEEEEEESSSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEE
T ss_pred             CChhHCCchheecCCCCCCCCCcCHHHHHHHHhcCCCEEEEEEEcCCccCCCCCEEEcCCCcEEEEEecceecCcCCceE
Confidence            36999999999999821137999999999988889999999997755778999999844799999999999999999999


Q ss_pred             EEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCCC
Q psy12057        129 AMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPP  171 (172)
Q Consensus       129 ala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~~  171 (172)
                      |||||+.+++++|++++|+++++.++|+|++.||++++++|+|
T Consensus       333 ala~v~~~~~~~g~~~~v~~~g~~~~a~v~~~Pf~~~~~~~~~  375 (375)
T 1wsr_A          333 AMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYTLK  375 (375)
T ss_dssp             EEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCCC-
T ss_pred             EEEEEChHHcCCCCEEEEEECCEEEEEEEEccCCcCccccCCC
Confidence            9999999998999999999999999999999999999877753

>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1

Probab=99.94  E-value=9.9e-27  Score=204.12  Aligned_cols=116  Identities=25%  Similarity=0.402  Sum_probs=109.1

Q ss_pred             CChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCCCcEEEEEEeeecccccCCe
Q psy12057         49 AMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKN  127 (172)
Q Consensus        49 dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~  127 (172)
                      .+|+|+||+|+|+|+|    +|||||++++++..|+.|+||+|.+++ .+++.|++|+. +|+.||.|||++|||+++++
T Consensus       280 ~~P~E~gl~~~V~f~K----gyiGqE~lar~~~~G~~rrlv~l~~~~~~~~~~g~~v~~-~g~~vG~VtS~~~sp~~~~~  354 (401)
T 1v5v_A          280 VTPLQANLEFAIYWDK----DFIGKDALLKQKERGVGRKLVHFKMIDKGIPREGYKVYA-NGEMIGEVTSGTLSPLLNVG  354 (401)
T ss_dssp             SCTTTTTCGGGCCTTS----CCTTHHHHHHHHHHCCCEEEEEEEESSSCCCCTTCEEEE-TTEEEEEEEEEEECTTTCSE
T ss_pred             CChHHCCcccccCCCC----CccCHHHHHHHHhhCCCeEEEEEEECCCCCCCCCCEEEE-CCEEEEEEEeeeEcCCCCce
Confidence            3799999999999987    599999999999889889999999987 78899999995 89999999999999999999


Q ss_pred             EEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCC
Q psy12057        128 IAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHT  169 (172)
Q Consensus       128 Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r  169 (172)
                      ||||||+.+++++|++++|+++++.++|+|++.||+++.+++
T Consensus       355 iala~v~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~~~~  396 (401)
T 1v5v_A          355 IGIAFVKEEYAKPGIEIEVEIRGQRKKAVTVTPPFYDPKKYG  396 (401)
T ss_dssp             EEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSCSSCTTTSS
T ss_pred             EEEEEEchHHcCCCCEEEEEECCEEEEEEEEccCCccccccC
Confidence            999999999999999999999999999999999999998765

>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A

Probab=99.94  E-value=1.4e-26  Score=200.29  Aligned_cols=114  Identities=32%  Similarity=0.431  Sum_probs=106.5

Q ss_pred             CChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCCCcEEEEEEeeecccccCCe
Q psy12057         49 AMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKN  127 (172)
Q Consensus        49 dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~  127 (172)
                      .+|+|+||+|.|+|+|    +|||||++++++.. ++|++++|.+++ .+++.|++|+. +|+.||.|||++|||+++++
T Consensus       247 ~~P~e~~l~~~V~~~K----gyiGqe~lar~~~~-~~rrlv~l~~~~~~~~~~g~~v~~-~g~~vG~vtS~~~sp~~g~~  320 (364)
T 1wos_A          247 TNPFEVGLSWVVKLNK----DFVGKEALLKAKEK-VERKLVALELSGKRIARKGYEVLK-NGERVGEITSGNFSPTLGKS  320 (364)
T ss_dssp             SCGGGGTCGGGCCTTS----CCTTHHHHHHHHHT-CCEEEEEEEESSSCCCCTTCEEEE-TTEEEEEEEEEEEETTTTEE
T ss_pred             CCHHHCCcccccCCCC----CCcCHHHHHHHHhc-cCeEEEEEEECCCcCCCCCCEEEE-CCeEEEEEEeceecCcCCce
Confidence            3699999999999987    59999999999888 999999999987 68899999995 89999999999999999999


Q ss_pred             EEEEEecCCccCCCCEEEEEECC-EEEeEEEEcCCCcCCCCCC
Q psy12057        128 IAMGYIEPAYSKVGVELWVRVRD-KRVDVKVTKMPFLKSNYHT  169 (172)
Q Consensus       128 Iala~V~~~~a~~G~~l~V~i~g-~~~~A~V~~~Pf~dp~~~r  169 (172)
                      ||||||+.+ +++|++++|++++ +.++|+|+++||+++.++|
T Consensus       321 iala~v~~~-~~~g~~l~v~~~~~~~~~a~v~~~Pf~~~~~~~  362 (364)
T 1wos_A          321 IALALVSKS-VKIGDQLGVVFPGGKLVEALVVKKPFYRGSVRR  362 (364)
T ss_dssp             EEEEEEETT-CCTTCEEEEEETTTEEEEEEEECSCSCCCSCC-
T ss_pred             EEEEEEccc-cCCCCEEEEEeCCCEEEEEEEEccCCCCccccc
Confidence            999999999 8999999999999 9999999999999998765

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.94  E-value=1.2e-26  Score=217.67  Aligned_cols=117  Identities=19%  Similarity=0.215  Sum_probs=110.2

Q ss_pred             ChhccccCccccCCCCCCCCCccHHHHHHhHhcCCCEEEEEEEecC--CCCCCCCEEEcCCCcEEEEEEeeecccccCCe
Q psy12057         50 MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGLTSTG--VPIRPGYEIFNANDQRVGAITSGCPSPSLKKN  127 (172)
Q Consensus        50 tP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~~r~LVgL~l~~--~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~  127 (172)
                      +|+|+||+|+|+|+|   +||||||++++++..|++||||+|.+++  .++++|++|+. +|+.||+|||++|||+++++
T Consensus       711 ~P~e~~l~~~v~~~k---g~f~G~e~~~r~~~~g~~rrlv~l~~~~~~~~~~~g~~v~~-~g~~vG~vts~~~sp~~~~~  786 (830)
T 1pj5_A          711 DPFEAGLGFAVKMAK---ESFIGKGALEGRTEEASARRLRCLTIDDGRSIVLGKEPVFY-KEQAVGYVTSAAYGYTVAKP  786 (830)
T ss_dssp             CTTTTTCGGGCCTTS---SCCTTHHHHTTCCSTTCSEEEEEEEETTSCCCCCSCCEEEE-TTEEEEECCSEEEETTTTEE
T ss_pred             CHHHCCCcCeeeCCC---CCCCCHHHHHHHHhcCCCeEEEEEEEeCCCCCCCCCCEEee-CCeEEEEEecceeccccCce
Confidence            699999999999986   6999999999998889999999999986  56789999985 89999999999999999999


Q ss_pred             EEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCCC
Q psy12057        128 IAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPP  171 (172)
Q Consensus       128 Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~~  171 (172)
                      ||||||+.++++ |++++|+++++.++|+|+++|||+|.+.|+.
T Consensus       787 iala~v~~~~~~-g~~~~v~~~~~~~~a~v~~~pf~~~~~~r~~  829 (830)
T 1pj5_A          787 IAYSYLPGTVSV-GDSVDIEYFGRRITATVTEDPLYDPKMTRLR  829 (830)
T ss_dssp             EEEEEEETTCCT-TCEEEEEETTEEEEEEEECSCSSCTTCTTTC
T ss_pred             EEEEEechhhcC-CCEEEEEECCEEEEEEEEcCCCcCCcccccC
Confidence            999999999988 9999999999999999999999999998874

>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*

Probab=99.94  E-value=4.3e-26  Score=199.11  Aligned_cols=123  Identities=24%  Similarity=0.270  Sum_probs=108.2

Q ss_pred             ccccccchhhhccCCChhccccCccccCCCCCCC--CCccHHHHHHhHhcCCCEEEEEEEecC-CCCCCCCEEEcCC---
Q psy12057         35 KTSSVNTILLELFLAMDIYSRLLIFPGKRRRETG--GFPGASIIQSQIKSGVSRKRTGLTSTG-VPIRPGYEIFNAN---  108 (172)
Q Consensus        35 ~~s~~~~~~~~~~~dtP~EaGLg~~V~~~K~~~~--dFIGkeAL~~~~~~g~~r~LVgL~l~~-~~~~~g~~V~~~d---  108 (172)
                      +.-.+..++.+  +.+|+|+||+|.|+|+|   +  ||||||++++++..|+. |+|+|.+++ .+++.|++|+. +   
T Consensus       244 G~p~~g~d~~~--~~~P~EagL~~~V~~~K---g~~cfiGqE~lar~~~~G~~-rlv~l~~~~~~~~~~g~~v~~-~~~~  316 (381)
T 1vlo_A          244 GMNLYGQEMDE--TISPLAANMGWTIAWEP---ADRDFIGREALEVQREHGTE-KLVGLVMTEKGVLRNELPVRF-TDAQ  316 (381)
T ss_dssp             TCCCBTTTBCT--TSCGGGTTCGGGCCCCS---TTCCCTTHHHHHHHHHHCCC-EEEEEEECSSSCCCTTCEEEE-ECTT
T ss_pred             CCCcccccCCC--CCChhhCCccceeECCC---CCCCCcCHHHHHHHHhcCCC-EEEEEEECCCcCCCCCCEEEE-CCCC
Confidence            33344444443  23699999999999987   5  99999999999988988 999999988 78899999995 5   


Q ss_pred             Cc-EEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCC
Q psy12057        109 DQ-RVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNY  167 (172)
Q Consensus       109 g~-~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~  167 (172)
                      |+ .||.|||++|||+++++||||||+.+   +|++++|+++++.++|+|++.|||+|.+
T Consensus       317 g~~~vG~VtS~~~sp~lg~~iala~v~~~---~g~~l~v~~~g~~~~a~v~~~Pf~~~~~  373 (381)
T 1vlo_A          317 GNQHEGIITSGTFSPTLGYSIALARVPEG---IGETAIVQIRNREMPVKVTKPVFVRNGK  373 (381)
T ss_dssp             CCEEEEEEEEEEEETTTTEEEEEEEECTT---CCSEEEEEETTEEEEEEEECSCCEETTE
T ss_pred             CCeeEEEEEEeeeCCCCCceEEEEEEEcC---CCCEEEEEECCEEEEEEEecCCCCCCCc
Confidence            88 99999999999999999999999987   7999999999999999999999999854

>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}

Probab=99.93  E-value=7.3e-26  Score=196.05  Aligned_cols=119  Identities=20%  Similarity=0.292  Sum_probs=102.9

Q ss_pred             ccccchhhhccCCChhccccC-ccccCCCCCCCCCccHHHHHHhHhcC-CCEEEEEEEecC-CCCCCCCEEEc---CCCc
Q psy12057         37 SSVNTILLELFLAMDIYSRLL-IFPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGLTSTG-VPIRPGYEIFN---ANDQ  110 (172)
Q Consensus        37 s~~~~~~~~~~~dtP~EaGLg-~~V~~~K~~~~dFIGkeAL~~~~~~g-~~r~LVgL~l~~-~~~~~g~~V~~---~dg~  110 (172)
                      -.+..++.+  +.+|+|+||+ |.|+|+|   +||||||++++++..| ++|+||+|.+++ .+++.|++|+.   .+|+
T Consensus       231 p~~g~d~~~--~~~P~Eagl~~~~V~f~K---gcfiGqE~lar~~~~G~~~rrlv~l~~~~~~~~~~g~~v~~~~~~~g~  305 (355)
T 3ttg_A          231 PLFPSELND--SFFPAEAGLDSVGVSYNK---GCYVGQEPVTRLKFQGHLNRSLAGFRLEGGPFPKMEFPVTLFNPKDGN  305 (355)
T ss_dssp             CCTTTTSST--TCCTTTTTCHHHHCCSSS---CCCTTHHHHHHHHHTSCCCEEEEEEEECC---CCSCSSEEEECTTTCC
T ss_pred             cccccccCC--CCCHHHcCCCCCeEECCC---CCccCHHHHHHHHhcCCCceEEEEEEECCCCCCCCCCEEEeccCCCCc
Confidence            334444433  2369999999 9999986   7999999999999888 899999999988 68899999983   2789


Q ss_pred             EEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCc
Q psy12057        111 RVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFL  163 (172)
Q Consensus       111 ~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~  163 (172)
                      .||.|||++|||+++++||||||+.+++++|++|+|   ++.++|+|+++|||
T Consensus       306 ~vG~VtS~~~sp~lg~~iaLa~v~~~~~~~g~~l~v---g~~~~a~v~~~Pf~  355 (355)
T 3ttg_A          306 EAGILTRTSSSDILGSGIGLGYIKRNFSENGTELLL---PDAQLVRVHSLPFV  355 (355)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEEC---TTCCEEEEECSCCC
T ss_pred             eEEEEEEeeECCCCCCEEEEEEEehhhcCCCCEEEe---CCeeeEEEeCCCCC
Confidence            999999999999999999999999999999999887   67789999999997

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.91  E-value=1.5e-24  Score=207.49  Aligned_cols=117  Identities=17%  Similarity=0.208  Sum_probs=107.7

Q ss_pred             ChhccccCccccCCCCCCCCCccHHHHHHhHhcC-CCEEEEEEEecC--CCCCCCCEEEcCCCc--------EEEEEEee
Q psy12057         50 MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGLTSTG--VPIRPGYEIFNANDQ--------RVGAITSG  118 (172)
Q Consensus        50 tP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g-~~r~LVgL~l~~--~~~~~g~~V~~~dg~--------~VG~VTSg  118 (172)
                      +|+|+||+|+|+|+|    ||||||++++++..| ++|+||+|.+++  .+++.|++|+. +|+        .||+|||+
T Consensus       837 ~P~e~gl~~~V~~~K----~fiGqe~l~r~~~~g~~rrrlv~l~~~~~~~~~~~g~~i~~-~g~~~~~~~~~~vG~vtS~  911 (965)
T 2gag_A          837 TPQDAGMEWVVSKLK----DFIGNRSYSRADNAREDRKQLVSVLPVDKSLRLPEGAALVA-SDALASEGITPMEGWVTSS  911 (965)
T ss_dssp             CTTTTTCGGGSCSSS----CCTTGGGGGSHHHHCSSCEEEEEEEESSTTCCCCTTCEEEE-TTCCCBTTBCCCCEEEEEE
T ss_pred             CHHHCCchhhcCCCC----CcCCHHHHHHHHhcCCCceEEEEEEEeCCCCCCCCCCEEEE-CCccccccCCcceEEEEee
Confidence            699999999999987    799999999988766 477899999986  57899999995 664        89999999


Q ss_pred             ecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCCCCCCC
Q psy12057        119 CPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSNYHTPP  171 (172)
Q Consensus       119 ~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~~~r~~  171 (172)
                      +|||+++++||||||+.+++++|++++|+++++.++|+|++.|||||++.|..
T Consensus       912 ~~sp~lg~~iala~v~~~~~~~g~~~~v~~~~~~~~a~v~~~pf~~~~~~r~~  964 (965)
T 2gag_A          912 YDSPNLGRTFGLALIKNGRNRIGEVLKTPVGDQLVDVVVSETVLYDPEGSRRD  964 (965)
T ss_dssp             EEETTTTEEEEEEEEETGGGCTTCEEEEEETTEEEEEEEECSCCSSTTCTTTT
T ss_pred             eEcCCCCceEEEEEEChhhcCCCCEEEEEECCEEEEEEEEccCCcCCCCcccC
Confidence            99999999999999999999999999999999999999999999999999864

>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A

Probab=99.87  E-value=3.4e-22  Score=171.75  Aligned_cols=124  Identities=10%  Similarity=0.074  Sum_probs=102.3

Q ss_pred             cccccccchhhhccCCChhccccC--ccccCCCCCCCCCccHHHHHHhHhcC-CCEEEEEEEecC-CCCCCCCEEEc-CC
Q psy12057         34 IKTSSVNTILLELFLAMDIYSRLL--IFPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGLTSTG-VPIRPGYEIFN-AN  108 (172)
Q Consensus        34 ~~~s~~~~~~~~~~~dtP~EaGLg--~~V~~~K~~~~dFIGkeAL~~~~~~g-~~r~LVgL~l~~-~~~~~g~~V~~-~d  108 (172)
                      ++.-.+..++.+  +.+|+|+||+  |.|+|+|   +||||||+++|++..| ++|+++.+..++ .+++.|++|+. .+
T Consensus       208 aG~p~~g~d~~~--~~~P~Eagl~~l~~V~f~K---gcyiGqE~lar~~~~G~~rr~l~~l~~~~~~~~~~g~~v~~~~~  282 (338)
T 1vly_A          208 AGFPVIDAANSG--QFIPQATNLQALGGISFKK---GCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMG  282 (338)
T ss_dssp             HTCCCCCGGGTT--SCCGGGGTGGGTTCCCSSS---CCCTTHHHHHHTTSTTSCCEEEEEEEECCSSCCCTTCCEEEEET
T ss_pred             cCCccccccccC--CcChhhcCccccCCCcCCC---cccCCHHHHHHHHhcCCCceEEEEEecCCCCCCCCCCEeEeccC
Confidence            333444444443  2369999999  9999987   6899999999998877 478888888765 67899999973 23


Q ss_pred             --CcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcCCC
Q psy12057        109 --DQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLKSN  166 (172)
Q Consensus       109 --g~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~dp~  166 (172)
                        |+.||.|||++||| ++++||||||+.++ .+|++++|  +++.++|+|+++||+.++
T Consensus       283 ~~g~~vG~VtS~~~~~-~g~~iala~v~~~~-~~g~~l~v--~g~~~~a~v~~~Pf~~~~  338 (338)
T 1vly_A          283 ENWRRTGTVLAAVKLE-DGQVVVQVVMNNDM-EPDSIFRV--RDDANTLHIEPLPYSLEE  338 (338)
T ss_dssp             TEEEEECEEEEEEECT-TSCEEEEEEEETTC-CTTCCEES--TTCSSCEEEECCSSCCC-
T ss_pred             CCCccceEEEEEEECC-CCCEEEEEEEeccc-CCCCeEEE--CCCCceeEEeCCCCCCCC
Confidence              48999999999999 99999999999988 78999888  888899999999998763

>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A

Probab=87.22  E-value=3.6  Score=28.51  Aligned_cols=61  Identities=15%  Similarity=0.200  Sum_probs=42.9

Q ss_pred             CEEEEEEEecC-CCCCCCCEEEcCCCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEE
Q psy12057         85 SRKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVT  158 (172)
Q Consensus        85 ~r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~  158 (172)
                      ++.++.+...+ .+++-|+.|.+.+|+.+|.|--+          |++|+...  .+...|.|.+.+. -.+++.
T Consensus         8 ~~~ll~l~~~dG~plPfGA~V~d~~g~~~giVG~~----------G~vyl~gl--~~~g~L~V~Wg~~-~~C~i~   69 (94)
T 3l48_A            8 KRLFAILRLADGSQPPFGASVTSEKGRELGMVADE----------GLAWLSGV--TPGETLSVNWDGK-IQCQVN   69 (94)
T ss_dssp             CCEEEEEEETTSCCCCTTCEEECTTCCEEEEBCGG----------GEEEESSC--CTTCEEEEECSSS-EEEEEE
T ss_pred             EEEEEEEECCCCCcCCCccEEEcCCCceEEEECCC----------CEEEEECC--CCCCEEEEEECCC-CeEEEE
Confidence            44566666654 67788999987678889988877          58999854  3456799998763 234444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1v5va1	89	b.44.2.1 (A:313-401) Glycine cleavage system T pro	1e-23
d1wosa1	83	b.44.2.1 (A:279-361) Glycine cleavage system T pro	2e-20
d1vloa1	90	b.44.2.1 (A:278-367) Glycine cleavage system T pro	5e-19
d1pj5a1	88	b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase,	2e-18

>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 89

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 86.7 bits (215), Expect = 1e-23
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 86  RKRTGLTSTGVPI-RPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVEL 144
           RK          I R GY+++  N + +G +TSG  SP L   I + +++  Y+K G+E+
Sbjct: 1   RKLVHFKMIDKGIPREGYKVYA-NGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEI 59

Query: 145 WVRVRDKRVDVKVTKMPFLKSNYHT 169
            V +R +R        PF     + 
Sbjct: 60  EVEIRGQRKKAVTVTPPFYDPKKYG 84

>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Length = 83

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Thermotoga maritima [TaxId: 2336]

 Score = 78.3 bits (193), Expect = 2e-20
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 86  RKRTGLTSTGVPI-RPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVEL 144
           RK   L  +G  I R GYE+   N +RVG ITSG  SP+L K+IA+  +  +        
Sbjct: 1   RKLVALELSGKRIARKGYEVLK-NGERVGEITSGNFSPTLGKSIALALVSKSVKIGDQLG 59

Query: 145 WVRVRDKRVDVKVTKMPFLKSNY 167
            V    K V+  V K PF + + 
Sbjct: 60  VVFPGGKLVEALVVKKPFYRGSV 82

>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Length = 90

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Escherichia coli [TaxId: 562]

 Score = 74.8 bits (184), Expect = 5e-19
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 85  SRKRTGLTSTGVPI-RPGYEIF---NANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKV 140
           + K  GL  T   + R    +       +Q  G ITSG  SP+L  +IA+  +      +
Sbjct: 1   TEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVP---EGI 57

Query: 141 GVELWVRVRDKRVDVKVTKMPFLK 164
           G    V++R++ + VKVTK  F++
Sbjct: 58  GETAIVQIRNREMPVKVTKPVFVR 81

>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} Length = 88

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: N,N-dimethylglycine oxidase, C-terminal domain
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 73.3 bits (180), Expect = 2e-18
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 85  SRKRTGLT-STGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVE 143
           +R+   LT   G  I  G E     +Q VG +TS     ++ K IA  Y+    S  G  
Sbjct: 1   ARRLRCLTIDDGRSIVLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPGTVSV-GDS 59

Query: 144 LWVRVRDKRVDVKVTKMPF 162
           + +    +R+   VT+ P 
Sbjct: 60  VDIEYFGRRITATVTEDPL 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1v5va1	89	Glycine cleavage system T protein, GcvT {Pyrococcu	99.94
d1pj5a1	88	N,N-dimethylglycine oxidase, C-terminal domain {Ar	99.93
d1wosa1	83	Glycine cleavage system T protein, GcvT {Thermotog	99.9
d1vloa1	90	Glycine cleavage system T protein, GcvT {Escherich	99.88
d1vloa2	274	Glycine cleavage system T protein, GcvT {Escherich	98.39
d1pj5a4	315	N,N-dimethylglycine oxidase domain 3 {Arthrobacter	98.31
d1v5va2	310	Glycine cleavage system T protein, GcvT {Pyrococcu	98.28
d1wosa2	278	Glycine cleavage system T protein, GcvT {Thermotog	98.06
d1vlya2	241	Hypothetical protein YgfZ, N-terminal domain {Esch	97.36
d1vlya1	82	Hypothetical protein YgfZ, C-terminal domain {Esch	91.19

>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=1.9e-26  Score=162.78  Aligned_cols=84  Identities=27%  Similarity=0.477  Sum_probs=80.7

Q ss_pred             EEEEEEEecC-CCCCCCCEEEcCCCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcC
Q psy12057         86 RKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLK  164 (172)
Q Consensus        86 r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~d  164 (172)
                      ||||||++++ .++++|++|+. ||+.||+|||++|||+++++||||||+.+++.+|++++|+++++.++|+|+..||||
T Consensus         1 rkLvGl~~~~~~i~~~g~~I~~-~g~~VG~vTSg~~Sp~l~~~Iala~v~~~~~~~g~~v~v~i~g~~~~a~v~~~PfyD   79 (89)
T d1v5va1           1 RKLVHFKMIDKGIPREGYKVYA-NGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEIEVEIRGQRKKAVTVTPPFYD   79 (89)
T ss_dssp             EEEEEEEESSSCCCCTTCEEEE-TTEEEEEEEEEEECTTTCSEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSCSSC
T ss_pred             CeEEEEEECCCccCCCCCEEEE-CCEEEEEEecCcCCCcCCceEEEEEECHHHcCCCCEEEEEECCeEEEEEEECCCCcC
Confidence            7899999998 88999999995 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy12057        165 SNYHTP  170 (172)
Q Consensus       165 p~~~r~  170 (172)
                      |++.|.
T Consensus        80 p~~~~~   85 (89)
T d1v5va1          80 PKKYGL   85 (89)
T ss_dssp             TTTSST
T ss_pred             CcccEE
Confidence            998875

>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: N,N-dimethylglycine oxidase, C-terminal domain
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.93  E-value=1.5e-25  Score=157.78  Aligned_cols=85  Identities=22%  Similarity=0.279  Sum_probs=78.6

Q ss_pred             CEEEEEEEecC--CCCCCCCEEEcCCCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCC
Q psy12057         85 SRKRTGLTSTG--VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPF  162 (172)
Q Consensus        85 ~r~LVgL~l~~--~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf  162 (172)
                      .||||+|.+++  .+++++++|+. ||+.||+|||++|||+++++||||||+.++ .+|++++|++++++++|+|+..||
T Consensus         1 srrLv~l~~d~~~~~~~g~epI~~-~g~~VG~vTS~~~Sp~l~k~Iala~v~~~~-~~g~~~~V~~~g~~~~a~v~~~P~   78 (88)
T d1pj5a1           1 ARRLRCLTIDDGRSIVLGKEPVFY-KEQAVGYVTSAAYGYTVAKPIAYSYLPGTV-SVGDSVDIEYFGRRITATVTEDPL   78 (88)
T ss_dssp             SEEEEEEEETTSCCCCCSCCEEEE-TTEEEEECCSEEEETTTTEEEEEEEEETTC-CTTCEEEEEETTEEEEEEEECSCS
T ss_pred             CCcEEEEEEECCCcCcCCCCeEEE-CCEEEEEEECCeECchhccceEEEEEecCc-CCCCEEEEEECCEEEEEEEEccCC
Confidence            48999999997  56778899995 999999999999999999999999999887 589999999999999999999999


Q ss_pred             cCCCCCCCC
Q psy12057        163 LKSNYHTPP  171 (172)
Q Consensus       163 ~dp~~~r~~  171 (172)
                      |||++.|++
T Consensus        79 yDP~~~r~r   87 (88)
T d1pj5a1          79 YDPKMTRLR   87 (88)
T ss_dssp             SCTTCTTTC
T ss_pred             CCCCCcccC
Confidence            999999874

>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=5.5e-24  Score=147.62  Aligned_cols=81  Identities=36%  Similarity=0.446  Sum_probs=73.7

Q ss_pred             EEEEEEEecC-CCCCCCCEEEcCCCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcCCCcC
Q psy12057         86 RKRTGLTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFLK  164 (172)
Q Consensus        86 r~LVgL~l~~-~~~~~g~~V~~~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~Pf~d  164 (172)
                      ||||||.+++ .++++|++|+. ||+.||+|||++|||+|+++||||||+.+++..|+.+.++++++.++|+|++.|||+
T Consensus         1 RrlvGl~i~~~~~~~~g~~I~~-~g~~VG~vTSg~~Sp~l~k~Iala~i~~~~~~~~~~~~~~~~g~~~~a~v~~~PF~~   79 (83)
T d1wosa1           1 RKLVALELSGKRIARKGYEVLK-NGERVGEITSGNFSPTLGKSIALALVSKSVKIGDQLGVVFPGGKLVEALVVKKPFYR   79 (83)
T ss_dssp             EEEEEEEESSSCCCCTTCEEEE-TTEEEEEEEEEEEETTTTEEEEEEEEETTCCTTCEEEEEETTTEEEEEEEECSCSCC
T ss_pred             CeEEEEEECCCcCCCCCCEEEE-CCEEEEEEeCccCCCCCCceEEEEEEChhhcCCCeEEEEEECCeEEEEEEECCCCcC
Confidence            6899999998 88999999995 999999999999999999999999999998766666777788999999999999998


Q ss_pred             CCC
Q psy12057        165 SNY  167 (172)
Q Consensus       165 p~~  167 (172)
                      ++.
T Consensus        80 ~~~   82 (83)
T d1wosa1          80 GSV   82 (83)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            653

>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2e-22  Score=141.93  Aligned_cols=78  Identities=32%  Similarity=0.439  Sum_probs=71.4

Q ss_pred             CEEEEEEEecC-CCCCCCCEEEc---CCCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcC
Q psy12057         85 SRKRTGLTSTG-VPIRPGYEIFN---ANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKM  160 (172)
Q Consensus        85 ~r~LVgL~l~~-~~~~~g~~V~~---~dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~  160 (172)
                      .+|||||.+++ .++++|++|+.   .+|+.||+|||++|||+++++||||||+.+   .|++++|++++++++|+|+++
T Consensus         1 t~kLVGl~l~~~~~~~~g~~v~~~~~~~~~~iG~VTSg~~Sp~l~k~Iala~v~~~---~g~~~~v~v~g~~~~a~v~~~   77 (90)
T d1vloa1           1 TEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEG---IGETAIVQIRNREMPVKVTKP   77 (90)
T ss_dssp             CCEEEEEEECSSSCCCTTCEEEEECTTCCEEEEEEEEEEEETTTTEEEEEEEECTT---CCSEEEEEETTEEEEEEEECS
T ss_pred             CCcEEEEEECCCCCCCCCCEEEecccCCCeEEEEEEcccCCCccCceEEEEEEecC---CCCEEEEEECCEEEEEEEECC
Confidence            36899999998 88899999983   368999999999999999999999999976   489999999999999999999


Q ss_pred             CCcCC
Q psy12057        161 PFLKS  165 (172)
Q Consensus       161 Pf~dp  165 (172)
                      |||++
T Consensus        78 PF~~~   82 (90)
T d1vloa1          78 VFVRN   82 (90)
T ss_dssp             CCEET
T ss_pred             CcccC
Confidence            99985

>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Glycine cleavage system T protein, GcvT
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=7.6e-08  Score=77.56  Aligned_cols=33  Identities=12%  Similarity=0.088  Sum_probs=29.3

Q ss_pred             ChhccccCccccCCCCCCCCCccHHHHHHhHhcC
Q psy12057         50 MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSG   83 (172)
Q Consensus        50 tP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g   83 (172)
                      +|+|+||+|+|+++| .|+||||||||++++++|
T Consensus       242 ~P~E~gL~~~v~~~~-~k~~fiGkeal~~~k~~G  274 (274)
T d1vloa2         242 SPLAANMGWTIAWEP-ADRDFIGREALEVQREHG  274 (274)
T ss_dssp             CGGGTTCGGGCCCCS-TTCCCTTHHHHHHHHHHC
T ss_pred             CHHHcCccceeCCCC-CCCCccCHHHHHHHHhcC
Confidence            699999999999986 357999999999998765

>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: N,N-dimethylglycine oxidase domain 3
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.31  E-value=6.4e-08  Score=79.96  Aligned_cols=31  Identities=10%  Similarity=0.092  Sum_probs=28.0

Q ss_pred             ChhccccCccccCCCCCCCCCccHHHHHHhHhcC
Q psy12057         50 MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSG   83 (172)
Q Consensus        50 tP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g   83 (172)
                      ||+||||+|+|+++|   +|||||+||++++++|
T Consensus       284 ~P~EagL~~~v~~~K---~~FiGkeAl~~~~~~g  314 (315)
T d1pj5a4         284 DPFEAGLGFAVKMAK---ESFIGKGALEGRTEEA  314 (315)
T ss_dssp             CTTTTTCGGGCCTTS---SCCTTHHHHTTCCSTT
T ss_pred             CHHHcCcchhhcCCC---CCccCHHHHHHHHhhC
Confidence            699999999999987   5899999999988765

>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Glycine cleavage system T protein, GcvT
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.28  E-value=1.7e-07  Score=76.94  Aligned_cols=33  Identities=18%  Similarity=0.144  Sum_probs=29.9

Q ss_pred             CCChhccccCccccCCCCCCCCCccHHHHHHhHhcCC
Q psy12057         48 LAMDIYSRLLIFPGKRRRETGGFPGASIIQSQIKSGV   84 (172)
Q Consensus        48 ~dtP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~g~   84 (172)
                      +.||+|+||+|+|+++|    |||||+||++++++|+
T Consensus       277 ~~tP~E~gl~~~v~~~k----~FiGkeal~~~~~~Gv  309 (310)
T d1v5va2         277 EVTPLQANLEFAIYWDK----DFIGKDALLKQKERGV  309 (310)
T ss_dssp             SSCTTTTTCGGGCCTTS----CCTTHHHHHHHHHHCC
T ss_pred             CCChHHcCCccccCCCC----CcccHHHHHHHHHhCC
Confidence            45899999999999986    7999999999998885

>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Glycine cleavage system T protein, GcvT
species: Thermotoga maritima [TaxId: 2336]

Probab=98.06  E-value=9.3e-07  Score=71.22  Aligned_cols=29  Identities=10%  Similarity=0.035  Sum_probs=26.4

Q ss_pred             ChhccccCccccCCCCCCCCCccHHHHHHhHhc
Q psy12057         50 MDIYSRLLIFPGKRRRETGGFPGASIIQSQIKS   82 (172)
Q Consensus        50 tP~EaGLg~~V~~~K~~~~dFIGkeAL~~~~~~   82 (172)
                      +|+||||+|+|+++|    |||||+||++++++
T Consensus       248 ~P~E~gl~~~v~~~k----~FiGkeal~~~k~~  276 (278)
T d1wosa2         248 NPFEVGLSWVVKLNK----DFVGKEALLKAKEK  276 (278)
T ss_dssp             CGGGGTCGGGCCTTS----CCTTHHHHHHHHHT
T ss_pred             CHHHCCCccccCCCC----CcChHHHHHHHHhh
Confidence            699999999999987    69999999998763

>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Hypothetical protein YgfZ, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=4.2e-05  Score=58.43  Aligned_cols=31  Identities=13%  Similarity=0.275  Sum_probs=26.3

Q ss_pred             ChhccccCcc--ccCCCCCCCCCccHHHHHHhHhcC
Q psy12057         50 MDIYSRLLIF--PGKRRRETGGFPGASIIQSQIKSG   83 (172)
Q Consensus        50 tP~EaGLg~~--V~~~K~~~~dFIGkeAL~~~~~~g   83 (172)
                      +|+|+||+|+  |||+|   +||+|+|.+.|..-.|
T Consensus       208 ~P~E~gLd~~~~Vsf~K---GCY~GQE~vAR~~~rG  240 (241)
T d1vlya2         208 IPQATNLQALGGISFKK---GCYTGQEMVARAKFRG  240 (241)
T ss_dssp             CGGGGTGGGTTCCCSSS---CCCTTHHHHHHTTSTT
T ss_pred             cHHHcCchhccCCCCCC---CCcCcHHHHHHHHhcC
Confidence            6999999985  99987   8999999998865433

>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Hypothetical protein YgfZ, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.19  E-value=0.47  Score=30.64  Aligned_cols=74  Identities=14%  Similarity=0.135  Sum_probs=51.1

Q ss_pred             CEEEEEEEecC-CCCCCCCEEEcC---CCcEEEEEEeeecccccCCeEEEEEecCCccCCCCEEEEEECCEEEeEEEEcC
Q psy12057         85 SRKRTGLTSTG-VPIRPGYEIFNA---NDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKM  160 (172)
Q Consensus        85 ~r~LVgL~l~~-~~~~~g~~V~~~---dg~~VG~VTSg~ySP~lgk~Iala~V~~~~a~~G~~l~V~i~g~~~~A~V~~~  160 (172)
                      +|++.-|.... .+|..|+.|...   +.+.+|.|-+++..+ -|+..+++.++.+.+ .+..+.+.  +.....++.++
T Consensus         2 KRamy~l~g~~~~~p~~G~~le~~~~~~wr~~G~Vv~a~~~~-dg~~~~laVL~~d~~-~~~~~r~~--~~~~~L~~~~L   77 (82)
T d1vlya1           2 KRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLE-DGQVVVQVVMNNDME-PDSIFRVR--DDANTLHIEPL   77 (82)
T ss_dssp             CEEEEEEEECCSSCCCTTCCEEEEETTEEEEECEEEEEEECT-TSCEEEEEEEETTCC-TTCCEEST--TCSSCEEEECC
T ss_pred             ccEEEEEEecccCCCCCCCEeEeecCCCCccccEEEEEEECC-CCcEEEEEEeCCCcc-cCccEEec--CCCCEeEEcCC
Confidence            46666666655 778889988632   337899999976544 678889999999864 45555553  22234678888


Q ss_pred             CC
Q psy12057        161 PF  162 (172)
Q Consensus       161 Pf  162 (172)
                      |+
T Consensus        78 PY   79 (82)
T d1vlya1          78 PY   79 (82)
T ss_dssp             SS
T ss_pred             CC
Confidence            86