Psyllid ID: psy12116


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
MLPRWRSGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKNKNVVKKKKKKKKKKKKKKKG
ccccccccccccEEEEEEEEcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHcccccccHHcHHHcccccccHHHHHHHHHHHHHHccc
cccccccEEEEEEEEcccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHcccc
mlprwrsgqdARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNkegirwrhiefsdntlclqlvegkpngllcvLDDQAKKNKNVVKKKKKKKkkkkkkkkg
mlprwrsgqdarlvirrawvrsQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLlcvlddqakknknvvkkkkkkkkkkkkkkkg
MLPRWRSGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAkknknvvkkkkkkkkkkkkkkkG
**********ARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD**************************
*************VIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKNKNVVKKKKK***********
********QDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKN********************
*****RSGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKNKNVVKKKKKKKKKKKK****
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLPRWRSGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKNKNVVKKKKKKKKKKKKKKKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query114 2.2.26 [Sep-21-2011]
Q13459 2157 Unconventional myosin-IXb yes N/A 0.587 0.031 0.597 7e-21
Q9Z1N3 2626 Unconventional myosin-IXa yes N/A 0.587 0.025 0.597 7e-21
Q8C170 2542 Unconventional myosin-IXa no N/A 0.587 0.026 0.597 8e-21
B2RTY4 2548 Unconventional myosin-IXa no N/A 0.587 0.026 0.597 9e-21
Q63358 1980 Unconventional myosin-IXb no N/A 0.587 0.033 0.582 1e-20
Q9QY06 2114 Unconventional myosin-IXb no N/A 0.587 0.031 0.582 3e-19
Q9QZZ4 3511 Unconventional myosin-XV no N/A 0.578 0.018 0.636 4e-19
Q9UKN7 3530 Unconventional myosin-XV no N/A 0.578 0.018 0.636 5e-19
Q13402 2215 Unconventional myosin-VII no N/A 0.640 0.032 0.520 6e-18
Q9U1M8 2357 Myosin-I heavy chain OS=D yes N/A 0.596 0.028 0.558 8e-18
>sp|Q13459|MYO9B_HUMAN Unconventional myosin-IXb OS=Homo sapiens GN=MYO9B PE=1 SV=3 Back     alignment and function desciption
 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 51/67 (76%)

Query: 25  SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 84
           SFEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I ++DN  C+ L+  KP GL 
Sbjct: 531 SFEQFCINYANEQLQYYFNQHIFKLEQEEYQGEGITWHNIGYTDNVGCIHLISKKPTGLF 590

Query: 85  CVLDDQA 91
            +LD+++
Sbjct: 591 YLLDEES 597




Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.
Homo sapiens (taxid: 9606)
>sp|Q9Z1N3|MYO9A_RAT Unconventional myosin-IXa OS=Rattus norvegicus GN=Myo9a PE=1 SV=1 Back     alignment and function description
>sp|Q8C170|MYO9A_MOUSE Unconventional myosin-IXa OS=Mus musculus GN=Myo9a PE=1 SV=2 Back     alignment and function description
>sp|B2RTY4|MYO9A_HUMAN Unconventional myosin-IXa OS=Homo sapiens GN=MYO9A PE=1 SV=2 Back     alignment and function description
>sp|Q63358|MYO9B_RAT Unconventional myosin-IXb OS=Rattus norvegicus GN=Myo9b PE=1 SV=1 Back     alignment and function description
>sp|Q9QY06|MYO9B_MOUSE Unconventional myosin-IXb OS=Mus musculus GN=Myo9b PE=1 SV=2 Back     alignment and function description
>sp|Q9QZZ4|MYO15_MOUSE Unconventional myosin-XV OS=Mus musculus GN=Myo15a PE=1 SV=2 Back     alignment and function description
>sp|Q9UKN7|MYO15_HUMAN Unconventional myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2 Back     alignment and function description
>sp|Q13402|MYO7A_HUMAN Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2 Back     alignment and function description
>sp|Q9U1M8|MYOI_DICDI Myosin-I heavy chain OS=Dictyostelium discoideum GN=myoI PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query114
189234985 1843 PREDICTED: similar to myosin-rhogap prot 0.789 0.048 0.656 2e-29
270002356 2021 hypothetical protein TcasGA2_TC001372 [T 0.789 0.044 0.656 3e-29
328701267 1776 PREDICTED: myosin-IXb isoform 4 [Acyrtho 0.578 0.037 0.848 2e-28
328701263 1931 PREDICTED: myosin-IXb isoform 2 [Acyrtho 0.578 0.034 0.848 2e-28
328701265 1863 PREDICTED: myosin-IXb isoform 3 [Acyrtho 0.578 0.035 0.848 2e-28
357623270 1062 hypothetical protein KGM_18974 [Danaus p 0.578 0.062 0.848 2e-28
328701269 1847 PREDICTED: myosin-IXb isoform 1 [Acyrtho 0.578 0.035 0.848 2e-28
242011074 783 myosin IIIB, putative [Pediculus humanus 0.666 0.097 0.737 9e-28
427791915 1463 Putative myosin class i heavy chain, par 0.570 0.044 0.784 1e-26
322797024 2118 hypothetical protein SINV_09798 [Solenop 0.578 0.031 0.803 3e-26
>gi|189234985|ref|XP_968193.2| PREDICTED: similar to myosin-rhogap protein, myr [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 76/99 (76%), Gaps = 9/99 (9%)

Query: 25  SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 84
           SFEQLCINYANEHLQYYFNQHVF+YEQEEY KEGIRW +I+F DNT CLQL+EGKPNGLL
Sbjct: 523 SFEQLCINYANEHLQYYFNQHVFKYEQEEYRKEGIRWNNIDFMDNTGCLQLIEGKPNGLL 582

Query: 85  CVLDDQ----AKKNKNVVKK-----KKKKKKKKKKKKKG 114
           C+LDDQ       N+ +++K     K  K   K +KK+G
Sbjct: 583 CLLDDQCNFPGATNETLLQKFNTVHKDNKFYNKPQKKEG 621




Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002356|gb|EEZ98803.1| hypothetical protein TcasGA2_TC001372 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328701267|ref|XP_003241548.1| PREDICTED: myosin-IXb isoform 4 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701263|ref|XP_003241546.1| PREDICTED: myosin-IXb isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701265|ref|XP_003241547.1| PREDICTED: myosin-IXb isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|357623270|gb|EHJ74495.1| hypothetical protein KGM_18974 [Danaus plexippus] Back     alignment and taxonomy information
>gi|328701269|ref|XP_001944223.2| PREDICTED: myosin-IXb isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242011074|ref|XP_002426282.1| myosin IIIB, putative [Pediculus humanus corporis] gi|212510345|gb|EEB13544.1| myosin IIIB, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|427791915|gb|JAA61409.1| Putative myosin class i heavy chain, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|322797024|gb|EFZ19338.1| hypothetical protein SINV_09798 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query114
UNIPROTKB|F1S9U2548 F1S9U2 "Uncharacterized protei 0.587 0.122 0.597 3.6e-21
WB|WBGene00002040 1880 hum-7 [Caenorhabditis elegans 0.587 0.035 0.656 5.3e-20
UNIPROTKB|E1BNV7 2159 MYO9B "Uncharacterized protein 0.587 0.031 0.597 2.3e-19
UNIPROTKB|E2R266 2161 MYO9B "Uncharacterized protein 0.587 0.031 0.597 3.8e-19
UNIPROTKB|Q13459 2157 MYO9B "Unconventional myosin-I 0.587 0.031 0.597 7.8e-19
UNIPROTKB|G3MXH1 1104 Bt.27781 "Uncharacterized prot 0.587 0.060 0.597 8.1e-19
UNIPROTKB|E1BS57 2001 Gga.50857 "Uncharacterized pro 0.587 0.033 0.597 8.4e-19
UNIPROTKB|E1C471 2031 Gga.50857 "Uncharacterized pro 0.587 0.032 0.597 8.5e-19
UNIPROTKB|E1C470 2140 Gga.50857 "Uncharacterized pro 0.587 0.031 0.597 9.1e-19
UNIPROTKB|H3BMM1 1301 MYO9A "Unconventional myosin-I 0.587 0.051 0.597 1e-18
UNIPROTKB|F1S9U2 F1S9U2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 241 (89.9 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
 Identities = 40/67 (59%), Positives = 52/67 (77%)

Query:    25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 84
             SFEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I+++DN  C+ L+  KP GL 
Sbjct:   404 SFEQFCINYANEQLQYYFNQHIFKLEQEEYQSEGISWHNIDYTDNVGCIHLISKKPTGLF 463

Query:    85 CVLDDQA 91
              +LD+++
Sbjct:   464 YLLDEES 470


GO:0016459 "myosin complex" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0003774 "motor activity" evidence=IEA
WB|WBGene00002040 hum-7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNV7 MYO9B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R266 MYO9B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q13459 MYO9B "Unconventional myosin-IXb" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3MXH1 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BS57 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C471 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C470 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H3BMM1 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9U1M8MYOI_DICDINo assigned EC number0.55880.59640.0288yesN/A
P32492MYO4_YEASTNo assigned EC number0.61760.58770.0455yesN/A
Q9Z1N3MYO9A_RATNo assigned EC number0.59700.58770.0255yesN/A
Q13459MYO9B_HUMANNo assigned EC number0.59700.58770.0310yesN/A
O74805MYO51_SCHPONo assigned EC number0.58820.58770.0455yesN/A
Q875X3MYO2A_NAUCCNo assigned EC number0.60290.58770.0427yesN/A
Q9V3Z6MYO7A_DROMENo assigned EC number0.520.65780.0346yesN/A
Q29P71MYO7A_DROPSNo assigned EC number0.520.65780.0345yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query114
cd01385 692 cd01385, MYSc_type_IX, Myosin motor domain, type I 5e-34
smart00242 677 smart00242, MYSc, Myosin 1e-33
cd00124 679 cd00124, MYSc, Myosin motor domain 8e-32
cd01384 674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 7e-29
pfam00063 679 pfam00063, Myosin_head, Myosin head (motor domain) 2e-28
cd01381 671 cd01381, MYSc_type_VII, Myosin motor domain, type 2e-28
cd01380 691 cd01380, MYSc_type_V, Myosin motor domain, type V 8e-28
cd01387 677 cd01387, MYSc_type_XV, Myosin motor domain, type X 3e-26
cd01383 677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 4e-25
cd01377 693 cd01377, MYSc_type_II, Myosin motor domain, type I 2e-24
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 7e-24
cd01379 653 cd01379, MYSc_type_III, Myosin motor domain, type 1e-22
cd01378 674 cd01378, MYSc_type_I, Myosin motor domain, type I 1e-21
cd01382 717 cd01382, MYSc_type_VI, Myosin motor domain, type V 1e-20
PTZ00014 821 PTZ00014, PTZ00014, myosin-A; Provisional 4e-11
cd01386 767 cd01386, MYSc_type_XVIII, Myosin motor domain, typ 3e-05
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information
 Score =  123 bits (310), Expect = 5e-34
 Identities = 44/72 (61%), Positives = 54/72 (75%)

Query: 20  VRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 79
                SFEQLCINYANE LQYYFNQH+F+ EQEEY  EGI W +IE++DN  C+QL   K
Sbjct: 389 FGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKK 448

Query: 80  PNGLLCVLDDQA 91
           P GLL +LD+++
Sbjct: 449 PTGLLYLLDEES 460


Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 114
cd01387 677 MYSc_type_XV Myosin motor domain, type XV myosins. 100.0
PTZ00014 821 myosin-A; Provisional 100.0
cd01383 677 MYSc_type_VIII Myosin motor domain, plant-specific 100.0
cd01381 671 MYSc_type_VII Myosin motor domain, type VII myosin 100.0
cd01382 717 MYSc_type_VI Myosin motor domain, type VI myosins. 100.0
cd01384 674 MYSc_type_XI Myosin motor domain, plant-specific t 100.0
cd01379 653 MYSc_type_III Myosin motor domain, type III myosin 100.0
cd01385 692 MYSc_type_IX Myosin motor domain, type IX myosins. 100.0
cd01377 693 MYSc_type_II Myosin motor domain, type II myosins. 100.0
cd01378 674 MYSc_type_I Myosin motor domain, type I myosins. M 100.0
COG5022 1463 Myosin heavy chain [Cytoskeleton] 99.98
cd01380 691 MYSc_type_V Myosin motor domain, type V myosins. M 99.98
smart00242 677 MYSc Myosin. Large ATPases. ATPase; molecular moto 99.97
cd00124 679 MYSc Myosin motor domain. This catalytic (head) do 99.97
cd01386 767 MYSc_type_XVIII Myosin motor domain, type XVIII my 99.97
PF00063 689 Myosin_head: Myosin head (motor domain); InterPro: 99.97
KOG0164|consensus 1001 99.96
KOG0161|consensus 1930 99.94
KOG0163|consensus 1259 99.94
KOG0160|consensus 862 99.93
KOG0162|consensus 1106 99.91
KOG4229|consensus 1062 99.9
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
Probab=100.00  E-value=8.7e-35  Score=247.70  Aligned_cols=99  Identities=45%  Similarity=0.591  Sum_probs=92.8

Q ss_pred             CCCCCCCcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCC
Q psy12116          2 LPRWRSGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN   81 (114)
Q Consensus         2 ~~~~~~~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~   81 (114)
                      +|.-...++.+|||||||.|+.|+|||||||||||+||++|++++|..++++|..|||+|..++|.||++|+|||+++|.
T Consensus       355 ~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~  434 (677)
T cd01387         355 SPTQDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPY  434 (677)
T ss_pred             CCCCCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCC
Confidence            34444555777799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhccccchhHH
Q psy12116         82 GLLCVLDDQAKKNKNVVKK  100 (114)
Q Consensus        82 GLlslLDEec~~Pk~td~~  100 (114)
                      |||+||||||++|++||+.
T Consensus       435 Gil~lLdee~~~p~~td~~  453 (677)
T cd01387         435 GILRILDDQCCFPQATDHT  453 (677)
T ss_pred             chHHHHHHHhcCCCCchHH
Confidence            9999999999999999986



In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0164|consensus Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>KOG0162|consensus Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query114
2ec6_A 838 Placopecten Striated Muscle Myosin Ii Length = 838 3e-17
2os8_A 840 Rigor-Like Structures Of Muscle Myosins Reveal Key 3e-17
1qvi_A 840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 5e-17
1kk7_A 837 Scallop Myosin In The Near Rigor Conformation Lengt 5e-17
1b7t_A 835 Myosin Digested By Papain Length = 835 6e-17
1dfl_A 831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 6e-17
1dfk_A 830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 6e-17
3i5g_A 839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 7e-17
1w8j_A 766 Crystal Structure Of Myosin V Motor Domain - Nucleo 2e-16
1oe9_A 795 Crystal Structure Of Myosin V Motor With Essential 2e-16
2w4g_M 840 Isometrically Contracting Insect Asynchronous Fligh 3e-16
4db1_A 783 Cardiac Human Myosin S1dc, Beta Isoform Complexed W 3e-16
2x9h_A 695 Crystal Structure Of Myosin-2 Motor Domain In Compl 5e-16
1mmg_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 6e-16
1mmn_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 6e-16
3mkd_A 692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 6e-16
2xo8_A 776 Crystal Structure Of Myosin-2 In Complex With Tribr 6e-16
3myh_X 762 Insights Into The Importance Of Hydrogen Bonding In 6e-16
1w9k_A 770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 6e-16
1yv3_A 762 The Structural Basis Of Blebbistatin Inhibition And 6e-16
1mmd_A 762 Truncated Head Of Myosin From Dictyostelium Discoid 6e-16
1mma_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 6e-16
2y9e_X 758 Structural Basis For The Allosteric Interference Of 6e-16
2y0r_X 758 Structural Basis For The Allosteric Interference Of 6e-16
3mnq_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 6e-16
2jhr_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 6e-16
1w9i_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 6e-16
1jwy_A 776 Crystal Structure Of The Dynamin A Gtpase Domain Co 6e-16
2xel_A 776 Molecular Mechanism Of Pentachloropseudilin Mediate 6e-16
1w9l_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 6e-16
1w9j_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 6e-16
2aka_A 776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 7e-16
1d0x_A 761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 7e-16
1fmv_A 761 Crystal Structure Of The Apo Motor Domain Of Dictyo 7e-16
2dfs_A 1080 3-D Structure Of Myosin-V Inhibited State Length = 9e-16
1g8x_A 1010 Structure Of A Genetically Engineered Molecular Mot 1e-15
1lvk_A 762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 2e-15
2mys_A 843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 7e-15
1m8q_A 840 Molecular Models Of Averaged Rigor Crossbridges Fro 7e-15
1br2_A 791 Smooth Muscle Myosin Motor Domain Complexed With Mg 3e-14
1br1_A 820 Smooth Muscle Myosin Motor Domain-Essential Light C 4e-14
3dtp_B 973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 9e-14
3dtp_A 971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 9e-14
4anj_A 1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 1e-13
4e7z_A 798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 1e-13
3j04_A 909 Em Structure Of The Heavy Meromyosin Subfragment Of 1e-13
4dbr_A 786 Myosin Vi D179y (md) Pre-powerstroke State Length = 1e-13
2v26_A 784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 1e-13
4dbq_A 788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 1e-13
4e7s_A 798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 1e-13
2x51_A 789 M6 Delta Insert1 Length = 789 1e-13
2vas_A 788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 1e-13
2bki_A 858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 1e-13
3l9i_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 1e-13
2bkh_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 1e-13
4dbp_A 814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 1e-13
2ycu_A 995 Crystal Structure Of Human Non Muscle Myosin 2c In 1e-13
1i84_S 1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 2e-13
1lkx_A 697 Motor Domain Of Myoe, A Class-I Myosin Length = 697 3e-13
4a7f_C 697 Structure Of The Actin-Tropomyosin-Myosin Complex ( 4e-13
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure

Iteration: 1

Score = 83.2 bits (204), Expect = 3e-17, Method: Composition-based stats. Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 2/67 (2%) Query: 25 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 83 SFEQLCINY NE LQ +FN H+F EQEEY KEGI+W I+F D +C+ L+E KP G+ Sbjct: 473 SFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIQWEFIDFGMDLQMCIDLIE-KPMGI 531 Query: 84 LCVLDDQ 90 L +L+++ Sbjct: 532 LSILEEE 538
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 Back     alignment and structure
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query114
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 2e-36
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 3e-36
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 2e-34
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 3e-33
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 8e-33
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-32
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 2e-32
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 7e-31
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-30
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 1e-28
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
 Score =  129 bits (326), Expect = 2e-36
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 11/101 (10%)

Query: 25  SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 84
           SFEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+
Sbjct: 397 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 456

Query: 85  CVLDDQ-----------AKKNKNVVKKKKKKKKKKKKKKKG 114
            +LD+                    +K    +     K + 
Sbjct: 457 SLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRS 497


>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query114
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 100.0
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 100.0
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 100.0
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 100.0
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 100.0
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 100.0
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 100.0
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 100.0
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 100.0
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.98
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 99.98
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-35  Score=254.29  Aligned_cols=94  Identities=34%  Similarity=0.527  Sum_probs=89.6

Q ss_pred             CcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeecccCChHHHHHHHhcCCCcccccc
Q psy12116          8 GQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL   87 (114)
Q Consensus         8 ~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~~dn~~~ldLi~~kP~GLlslL   87 (114)
                      ..+++|||||||.|+.|+|||||||||||+||++|++++|..||+||..|||+|..++|.||++|+|||+++|+|||+||
T Consensus       446 ~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslL  525 (784)
T 2v26_A          446 YFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDIL  525 (784)
T ss_dssp             EEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHH
T ss_pred             ceeeecccCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHH
Confidence            34566699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchhHHH
Q psy12116         88 DDQAKKNKNVVKKK  101 (114)
Q Consensus        88 DEec~~Pk~td~~~  101 (114)
                      ||||++|++||+.=
T Consensus       526 DEe~~~p~~tD~~f  539 (784)
T 2v26_A          526 DEENRLPQPSDQHF  539 (784)
T ss_dssp             HHHHHSSSCCHHHH
T ss_pred             HHHhcCCCCChHHH
Confidence            99999999999753



>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 114
d1lkxa_ 684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 5e-18
d2mysa2 794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 4e-16
d1br2a2 710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 6e-16
d1w7ja2 730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 2e-15
d1kk8a2 789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 5e-15
d1d0xa2 712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 4e-14
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
 Score = 75.9 bits (186), Expect = 5e-18
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 12/101 (11%)

Query: 25  SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 84
           SFEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448

Query: 85  CVLDDQ------------AKKNKNVVKKKKKKKKKKKKKKK 113
            +LD+                 K   K    +     K + 
Sbjct: 449 SLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRS 489


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query114
d1d0xa2 712 Myosin S1, motor domain {Dictyostelium discoideum 99.97
d1lkxa_ 684 Myosin S1, motor domain {Dictyostelium discoideum, 99.97
d1w7ja2 730 Myosin S1, motor domain {Chicken (Gallus gallus), 99.96
d1br2a2 710 Myosin S1, motor domain {Chicken (Gallus gallus), 99.96
d2mysa2 794 Myosin S1, motor domain {Chicken (Gallus gallus), 99.96
d1kk8a2 789 Myosin S1, motor domain {Bay scallop (Aequipecten 99.96
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.97  E-value=7.8e-32  Score=227.34  Aligned_cols=102  Identities=38%  Similarity=0.598  Sum_probs=85.9

Q ss_pred             CCCCCCCcceEEEEccccccCCCchhhhhhhhhhhHHHHHHHHHhhhhhHHhhhhcCceeeeccc-CChHHHHHHHhc-C
Q psy12116          2 LPRWRSGQDARLVIRRAWVRSQPSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-K   79 (114)
Q Consensus         2 ~~~~~~~~~~~ld~~gfe~~~~NsfeQlcIN~anE~Lq~~~~~~~f~~e~~ey~~EgI~~~~i~~-~dn~~~ldLi~~-k   79 (114)
                      +|+-...++++|||||||.+..|+|||||||||||+||++|++++|..++++|..|||+|..++| .||++|++||++ +
T Consensus       395 ~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~f~~eq~eY~~EgI~~~~i~~~~dn~~~~~Li~~k~  474 (712)
T d1d0xa2         395 CQERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ  474 (712)
T ss_dssp             CCSCCSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--------CHHHHHHHHHCTT
T ss_pred             ccCcccceeeeeecccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccCCCcHHHHHHHhccC
Confidence            34444455777799999999999999999999999999999999999999999999999999999 599999999986 5


Q ss_pred             CCcccccchhhhccccchhHHHHH
Q psy12116         80 PNGLLCVLDDQAKKNKNVVKKKKK  103 (114)
Q Consensus        80 P~GLlslLDEec~~Pk~td~~~~~  103 (114)
                      |.|||++|||||++|++||+.=-.
T Consensus       475 p~Gll~lLdee~~~~~~td~~~l~  498 (712)
T d1d0xa2         475 PPGILALLDEQSVFPNATDNTLIT  498 (712)
T ss_dssp             TTCHHHHHHHHHTCTTCCHHHHHH
T ss_pred             CCcHHHHhHHHhcCCCCChHHHHH
Confidence            899999999999999999986433



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure