Psyllid ID: psy12134

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MLVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYMADAPPTKL
Secondary Structure (PSIPRED)
cEEEEEcccEEEEEccEEEEccccccccEEEEEEEEccccccccEEEEEEEEcccEEEEcccEEEccccccEEEEEEEEEccccEEcccccEEccccEEEEEEcccccEEEEEEcEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccEEEEcccEEEEEEEEHHcccEEEEEEccccccccEEEEEEEEEcccEEEEcccEEEcccccEEEEEEEEEcccccHHHccccEccccccccEEEcccccEEEEEcccccccccccccccHHHcccccccc
Coil and Loop (DISEMBL)
MLVIFFSKIELlynresldlDRVTLKLAGLYQCiasnnigestsknfivnviyppevsvekqwihtaPDMRAEIICNvyanppakrfdegtrfdegtvtakvlqpfsertlsvqdkigpgpdsnlrpsaymadapptkl
Flexible Loop (DISEMBL)
MLVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIAsnnigestsknFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTRFDEGTVTAkvlqpfsertlsvqdkigpgpdsnlrpsaymadapptkl
Low Complexity Region (SEG)
MLVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYMADAPPTKL
Disordered region (IsUnstruct)
*LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTRFDEGTVTAKV*************************************
Disordered Region (DISOPRED)
MLVIFF*KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTRFDE***************************SNLRPSAYMA*APP***
Disordered Region (DISEMBL)
MLVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYM********
Disordered Region (DISPRO)
MLVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYMADAP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYMADAPPTKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.517	0.206	0.291	0.0001
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.640	0.017	0.309	0.0002
Q6AZB0	1110	Brother of CDO OS=Mus mus	no	N/A	0.568	0.071	0.301	0.0004
P20273	847	B-cell receptor CD22 OS=H	no	N/A	0.625	0.102	0.315	0.0006
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.410	0.011	0.383	0.0006

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%)

Query: 12  LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR 71
           +Y    L + R+  +  G Y C+A N +G+   +N  V V +PP ++V +  +  A    
Sbjct: 180 IYRGNVLKISRIGKEDRGTYYCVAENGVGKGARRNIAVEVEFPPVITVPRPRLGQALQYD 239

Query: 72  AEIICNVYANPP 83
            ++ C+V A PP
Sbjct: 240 MDLECHVEAYPP 251

May play a role in early neuronal differentiation and axon outgrowth.
Schistocerca americana (taxid: 7009)

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 21/110 (19%)

Query: 29   GLYQCIASNNIGESTSKNFIVNVIYPPEVSVE--KQWIHTAPDMRAEIICNVYANPPAKR 86
            GLY C+ASN  GE+  +NF V V+ PP +  E  ++ I       A++ CN   +PP K 
Sbjct: 2453 GLYSCLASNEAGEA-RRNFSVEVLVPPSIENEDLEEVIKVPEGQTAQLECNATGHPPPKV 2511

Query: 87   FDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLR--PSAYMADA 134
                T F +G            ++L+V+D     PD      P A +++A
Sbjct: 2512 ----TWFKDG------------QSLTVEDPYEMSPDGAFLWIPQANLSNA 2545

Mus musculus (taxid: 10090)

>sp|Q6AZB0|BOC_MOUSE Brother of CDO OS=Mus musculus GN=Boc PE=1 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 3   VIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV--IYPPEVSVE 60
           +  ++K   L +  +L +D  + + +G Y+C+ASN +G+  +   + NV    PPEV+VE
Sbjct: 266 IAAYNKTRFLLS--NLLIDTTSEEDSGTYRCMASNGVGDPGAAVILYNVQVFEPPEVTVE 323

Query: 61  KQWIHTAPDMRAEIICNVYANPP 83
              +       A++ C V  NPP
Sbjct: 324 LSQLVIPWGQSAKLTCEVRGNPP 346

Component of a cell-surface receptor complex that mediates cell-cell interactions between muscle precursor cells. Promotes differentiation of myogenic cells.

Mus musculus (taxid: 10090)

>sp|P20273|CD22_HUMAN B-cell receptor CD22 OS=Homo sapiens GN=CD22 PE=1 SV=2

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 4   IFFSKIELLYNRES-LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP---EVSV 59
            F+ K   L  +ES L+ D ++ + AG Y C  +N+IG++ SK + + V+Y P    VS+
Sbjct: 541 FFWEKNGRLLGKESQLNFDSISPEDAGSYSCWVNNSIGQTASKAWTLEVLYAPRRLRVSM 600

Query: 60  EKQWIHTAPDMRAEIICNVYANPPAKRFDEGTRFD 94
                       A + C   ANPP   +   T FD
Sbjct: 601 SPG-DQVMEGKSATLTCESDANPPVSHY---TWFD 631

Mediates B-cell B-cell interactions. May be involved in the localization of B-cells in lymphoid tissues. Binds sialylated glycoproteins; one of which is CD45. Preferentially binds to alpha-2,6-linked sialic acid. The sialic acid recognition site can be masked by cis interactions with sialic acids on the same cell surface. Upon ligand induced tyrosine phosphorylation in the immune response seems to be involved in regulation of B-cell antigen receptor signaling. Plays a role in positive regulation through interaction with Src family tyrosine kinases and may also act as an inhibitory receptor by recruiting cytoplasmic phosphatases via their SH2 domains that block signal transduction through dephosphorylation of signaling molecules.

Homo sapiens (taxid: 9606)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 28   AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE--KQWIHTAPDMRAEIICNVYANPPAK 85
            +GLY C+ASN  GE+  +NF V V+ PP +  E  ++ I       A ++CNV  +P  K
Sbjct: 2418 SGLYSCLASNEAGEA-RRNFSVEVLVPPSIENEDLEEVIKVLDGQTAHLMCNVTGHPQPK 2476

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
242018223	500	limbic system-associated membrane protei	0.489	0.136	0.382	2e-11
270004453	431	hypothetical protein TcasGA2_TC003806 [T	0.597	0.192	0.383	2e-11
170060459	169	conserved hypothetical protein [Culex qu	0.467	0.384	0.446	2e-11
189235691	469	PREDICTED: similar to lachesin, putative	0.597	0.176	0.383	4e-11
347967624	423	AGAP002325-PA [Anopheles gambiae str. PE	0.618	0.203	0.385	5e-11
195399512	476	GJ14353 [Drosophila virilis] gi|19414192	0.482	0.140	0.417	1e-10
195054068	409	GH22352 [Drosophila grimshawi] gi|193895	0.482	0.163	0.417	1e-10
195113691	526	GI21998 [Drosophila mojavensis] gi|19391	0.482	0.127	0.417	1e-10
242021179	454	limbic system-associated membrane protei	0.489	0.149	0.397	2e-10
157112896	123	hypothetical protein AaeL_AAEL000156 [Ae	0.467	0.528	0.430	2e-10

>gi|242018223|ref|XP_002429579.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212514537|gb|EEB16841.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 48/68 (70%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           S+ +++ T   AG+YQC ASN +G+   ++ +++V+YPPE+ VE+ W+H+     A+++C
Sbjct: 184 SITIEQATRHQAGVYQCKASNGVGKPVEQSIVLHVLYPPEIEVERSWVHSGEGFEAQLVC 243

Query: 77  NVYANPPA 84
            V++ PPA
Sbjct: 244 IVHSEPPA 251

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004453|gb|EFA00901.1| hypothetical protein TcasGA2_TC003806 [Tribolium castaneum]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 2   LVIFFSK---IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
           ++ +++K   I+LL  RE L       ++AG+Y+C A+N +GE  S    +N+IYPPE+ 
Sbjct: 125 IITWYTKGEEIKLLNPRELLKFTASDRQMAGIYECRAANGVGEPASAQIELNIIYPPELM 184

Query: 59  VEKQWIHTAPDMRAEIICNVYANPPA 84
             + WIHTAP  R ++ C + A+P A
Sbjct: 185 TSRSWIHTAPGHRVQLECKISADPQA 210

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170060459|ref|XP_001865812.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167878926|gb|EDS42309.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 47/65 (72%)

Query: 18  LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 77
           L L+RV  + AG+YQC A NN+GE+ + +  ++V+YPP++SV+K WIH+     A++ C 
Sbjct: 60  LTLERVERQQAGVYQCTADNNVGEAVTVDMRLDVLYPPDISVDKSWIHSGEGFEAQLECI 119

Query: 78  VYANP 82
           V+A+P
Sbjct: 120 VHADP 124

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235691|ref|XP_966538.2| PREDICTED: similar to lachesin, putative [Tribolium castaneum]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 2   LVIFFSK---IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
           ++ +++K   I+LL  RE L       ++AG+Y+C A+N +GE  S    +N+IYPPE+ 
Sbjct: 163 IITWYTKGEEIKLLNPRELLKFTASDRQMAGIYECRAANGVGEPASAQIELNIIYPPELM 222

Query: 59  VEKQWIHTAPDMRAEIICNVYANPPA 84
             + WIHTAP  R ++ C + A+P A
Sbjct: 223 TSRSWIHTAPGHRVQLECKISADPQA 248

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967624|ref|XP_312645.4| AGAP002325-PA [Anopheles gambiae str. PEST] gi|333468374|gb|EAA07686.4| AGAP002325-PA [Anopheles gambiae str. PEST]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 10/96 (10%)

Query: 18  LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 77
           L L+RV  + AG+YQC A N++GE  + +  ++V+YPP++SVEK WIH+     A++ C 
Sbjct: 123 LSLERVERQQAGVYQCTADNSVGEPVTVDMRLDVLYPPDISVEKSWIHSGEGFEAQLECI 182

Query: 78  VYANP-PAKRFDEGTRFDEGTVTAKVLQPFSERTLS 112
           V+A+P P   +++ + F         LQP   RT+S
Sbjct: 183 VHADPQPTVSWNQNS-FP--------LQPTDRRTMS 209

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195399512|ref|XP_002058363.1| GJ14353 [Drosophila virilis] gi|194141923|gb|EDW58331.1| GJ14353 [Drosophila virilis]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 46/67 (68%)

Query: 18  LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 77
           L LD++  + AG+YQC A N +G+  + +  ++V+YPP++ VEK WIH+     A+++C 
Sbjct: 178 LTLDKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKLVCI 237

Query: 78  VYANPPA 84
           VYA+P A
Sbjct: 238 VYADPVA 244

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195054068|ref|XP_001993948.1| GH22352 [Drosophila grimshawi] gi|193895818|gb|EDV94684.1| GH22352 [Drosophila grimshawi]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 46/67 (68%)

Query: 18  LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 77
           L LD++  + AG+YQC A N +G+  + +  ++V+YPP++ VEK WIH+     A+++C 
Sbjct: 111 LTLDKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKLVCI 170

Query: 78  VYANPPA 84
           VYA+P A
Sbjct: 171 VYADPVA 177

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113691|ref|XP_002001401.1| GI21998 [Drosophila mojavensis] gi|193917995|gb|EDW16862.1| GI21998 [Drosophila mojavensis]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 46/67 (68%)

Query: 18  LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 77
           L LD++  + AG+YQC A N +G+  + +  ++V+YPP++ VEK WIH+     A+++C 
Sbjct: 228 LTLDKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKLVCI 287

Query: 78  VYANPPA 84
           VYA+P A
Sbjct: 288 VYADPVA 294

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021179|ref|XP_002431023.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212516252|gb|EEB18285.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 47/68 (69%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           S+ +++ T   AG Y C ASN +G+S  ++  ++V+YPPEV VE+ W+H+     A+++C
Sbjct: 169 SITIEQATRHQAGTYLCTASNGVGDSAIQSINLHVLYPPEVEVERSWVHSGEGFEAQLVC 228

Query: 77  NVYANPPA 84
            V+A+PP+
Sbjct: 229 IVHADPPS 236

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112896|ref|XP_001657666.1| hypothetical protein AaeL_AAEL000156 [Aedes aegypti] gi|108884632|gb|EAT48857.1| AAEL000156-PA, partial [Aedes aegypti]

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 46/65 (70%)

Query: 18  LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 77
           L L+RV  + AG+YQC A NN+G+  + +  ++V+YPP++SV+K WIH+     A++ C 
Sbjct: 56  LTLERVERQQAGVYQCTADNNVGDPVTVDMRLDVLYPPDISVDKSWIHSGEGFEAQLECI 115

Query: 78  VYANP 82
           V+A+P
Sbjct: 116 VHADP 120

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
FB|FBgn0017590	545	klg "klingon" [Drosophila mela	0.482	0.122	0.388	3.8e-11
RGD|1311610	852	Cd22 "CD22 molecule" [Rattus n	0.510	0.083	0.421	5.2e-09
FB|FBgn0025878	500	wrapper "wrapper" [Drosophila	0.553	0.154	0.392	4.4e-08
UNIPROTKB|H9L3A2	632	IGSF9 "Uncharacterized protein	0.546	0.120	0.363	7.4e-08
FB|FBgn0037107	467	CG7166 [Drosophila melanogaste	0.546	0.162	0.328	8.4e-08
FB|FBgn0051774	1442	fred "friend of echinoid" [Dro	0.431	0.041	0.403	4e-07
FB|FBgn0000547	1332	ed "echinoid" [Drosophila mela	0.453	0.047	0.365	8.1e-06
FB|FBgn0259245	555	CG42343 [Drosophila melanogast	0.489	0.122	0.385	4.1e-05
FB|FBgn0259714	467	CG42368 [Drosophila melanogast	0.589	0.175	0.309	8.8e-05
WB|WBGene00020130	718	igcm-2 [Caenorhabditis elegans	0.467	0.090	0.378	0.00012

FB|FBgn0017590 klg "klingon" [Drosophila melanogaster (taxid:7227)]

 Score = 163 (62.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 26/67 (38%), Positives = 46/67 (68%)

Query:    18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 77
             L L+++  + AG+YQC A N +G+  + +  ++V+YPP++ VEK WIH+     A+++C 
Sbjct:   251 LTLEKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKLVCI 310

Query:    78 VYANPPA 84
             V+A+P A
Sbjct:   311 VFADPVA 317

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0007465 "R7 cell fate commitment" evidence=IGI

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IMP

RGD|1311610 Cd22 "CD22 molecule" [Rattus norvegicus (taxid:10116)]

 Score = 135 (52.6 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
 Identities = 32/76 (42%), Positives = 43/76 (56%)

Query:    15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP---DMR 71
             +E L L  VT  + G YQC ASNNIG+  SK   + V+YPPE S  K  I+ +P      
Sbjct:   296 QEELTLHSVTKDMRGKYQCRASNNIGQGQSKEVALTVLYPPEPS--KVHIYPSPAEEGQS 353

Query:    72 AEIICNVYANPPAKRF 87
              E+IC+  A+P A  +
Sbjct:   354 VELICDSLASPRATNY 369

GO:0005887 "integral to plasma membrane" evidence=IEA;ISO

GO:0009897 "external side of plasma membrane" evidence=IEA;ISO

FB|FBgn0025878 wrapper "wrapper" [Drosophila melanogaster (taxid:7227)]

 Score = 134 (52.2 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 31/79 (39%), Positives = 46/79 (58%)

Query:    14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
             NR+SL L+  +   AGL +C+ASN +GE    N  ++V++ PEVS+ +  ++T    RA 
Sbjct:   181 NRQSLILEIKSRNQAGLIECVASNGVGEPAVANVYLHVLFSPEVSIPQPVVYTKLGSRAH 240

Query:    74 IICNVYANPPA--KRFDEG 90
             + C V A P A  K F  G
Sbjct:   241 LECIVEAAPAATVKWFHHG 259

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0042063 "gliogenesis" evidence=IMP

GO:0007399 "nervous system development" evidence=IEP

GO:0007409 "axonogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|H9L3A2 IGSF9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 114 (45.2 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
 Identities = 28/77 (36%), Positives = 40/77 (51%)

Query:     7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 66
             +++ +L +  SL L R T   AG Y CIASN + +  S +  + V+YP +V+      H 
Sbjct:   142 ARVRILVDG-SLLLQRATPDDAGKYTCIASNGLWKPPSASAFITVLYPAQVTTMLPETHL 200

Query:    67 APDMRAEIICNVYANPP 83
                MR  I C   ANPP
Sbjct:   201 PKGMRGIIRCPTRANPP 217

GO:0016358 "dendrite development" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

FB|FBgn0037107 CG7166 [Drosophila melanogaster (taxid:7227)]

 Score = 131 (51.2 bits), Expect = 8.4e-08, P = 8.4e-08
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query:     6 FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 65
             FS    L +  +L L+ V    AG YQC A N + +  S +  + ++ PPE++VEK W+H
Sbjct:   176 FSGPTHLSDSSTLILENVDRHHAGTYQCSADNGVKDRVSMDIQLTILSPPEITVEKSWVH 235

Query:    66 TAPDMRAEIICNVYAN 81
              +     E++C V+ +
Sbjct:   236 ASEGYDVELVCIVHGD 251

GO:0005576 "extracellular region" evidence=ISS

FB|FBgn0051774 fred "friend of echinoid" [Drosophila melanogaster (taxid:7227)]

 Score = 116 (45.9 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:    22 RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII-CNVYA 80
             RV    AG Y C A N +G++  K+ +++V+YPP V +E +  H A +    +I CNV A
Sbjct:   279 RVNRHHAGKYTCSADNGLGKTGEKDIVLDVLYPPIVFIESK-THEAEEGETVLIRCNVTA 337

Query:    81 NP 82
             NP
Sbjct:   338 NP 339

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=NAS

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0007423 "sensory organ development" evidence=IMP

GO:0035018 "adult chitin-based cuticle pattern formation" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0000547 ed "echinoid" [Drosophila melanogaster (taxid:7227)]

 Score = 118 (46.6 bits), Expect = 8.1e-06, P = 8.1e-06
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:    20 LDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVY 79
             + RV+++ AG Y CIA N +G++  +  I++++YPP V +E +           I CNV 
Sbjct:   303 IHRVSVQDAGKYTCIADNGLGKTGEQELILDILYPPMVVIESKTREAEEGDTVTIRCNVT 362

Query:    80 ANP 82
             ANP
Sbjct:   363 ANP 365

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IMP;IPI

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI;NAS;IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=ISS

GO:0050768 "negative regulation of neurogenesis" evidence=IMP

GO:0007423 "sensory organ development" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IMP;IDA

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0005913 "cell-cell adherens junction" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048644 "muscle organ morphogenesis" evidence=IMP

GO:0030038 "contractile actin filament bundle assembly" evidence=IMP

GO:0007391 "dorsal closure" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0035157 "negative regulation of fusion cell fate specification" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0005912 "adherens junction" evidence=IDA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

GO:0090138 "regulation of actin cytoskeleton organization by cell-cell adhesion" evidence=IMP

GO:0035330 "regulation of hippo signaling cascade" evidence=IPI

GO:0035331 "negative regulation of hippo signaling cascade" evidence=IGI

GO:0046621 "negative regulation of organ growth" evidence=IMP

FB|FBgn0259245 CG42343 [Drosophila melanogaster (taxid:7227)]

 Score = 107 (42.7 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query:    16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-AEI 74
             E L L ++T    G Y CIASN +  + SK   + V + P V V  Q +  AP +    +
Sbjct:   272 EMLTLSKITRSEMGAYMCIASNGVPPTVSKRMKLQVHFHPLVQVPNQLVG-APVLTDVTL 330

Query:    75 ICNVYANPPA 84
             ICNV A+P A
Sbjct:   331 ICNVEASPKA 340

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0259714 CG42368 [Drosophila melanogaster (taxid:7227)]

 Score = 103 (41.3 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query:    16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 75
             +SL+L+R++    G Y CIASN +  S SK   V+V + P V +  Q +         + 
Sbjct:   214 DSLELERISRLHMGAYLCIASNGVPPSVSKRIKVSVDFSPMVWIPHQLVGIPIGFNITLE 273

Query:    76 CNVYANPPAKRFDEGTRFDEGTVT 99
             C + ANP +  +   TR ++  +T
Sbjct:   274 CFIEANPTSLNY--WTRENDQMIT 295

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00020130 igcm-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 104 (41.7 bits), Expect = 0.00012, P = 0.00012
 Identities = 25/66 (37%), Positives = 33/66 (50%)

Query:    18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-AEIIC 76
             L L  V    +G Y C A N+ GE+TS    ++V YPPE     Q + T    R   + C
Sbjct:   181 LSLQDVRKSDSGWYTCEAKNSAGETTSSTAYLHVFYPPEPLSSHQPVQTVASGRNTTVSC 240

Query:    77 NVYANP 82
             +V ANP
Sbjct:   241 DVIANP 246

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	6e-04

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 35.9 bits (83), Expect = 6e-04
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 11 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSK 45
          L+Y+  +LD+   T+K  G + CIASN  GE+T+ 
Sbjct: 35 LVYDNGTLDILITTVKDTGSFTCIASNAAGEATAT 69

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG3513|consensus	1051		99.74
KOG3513|consensus	1051		99.66
PHA02826	227	IL-1 receptor-like protein; Provisional	99.58
PHA02785	326	IL-beta-binding protein; Provisional	99.58
KOG4222|consensus	1281		99.57
KOG4194|consensus	873		99.55
KOG4221|consensus	1381		99.51
PHA02785	326	IL-beta-binding protein; Provisional	99.51
KOG4194|consensus	873		99.49
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.41
KOG4221|consensus	1381		99.39
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.36
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.32
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.31
KOG4222|consensus	1281		99.29
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.28
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.27
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.2
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.2
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.2
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.19
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.18
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.18
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.18
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.18
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.18
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.18
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.17
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.16
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.16
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.14
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.14
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.13
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.12
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.12
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.12
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.12
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.12
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.12
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.11
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.09
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.09
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.08
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.07
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.07
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.06
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.06
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.05
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.05
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.05
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.03
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.02
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.02
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.02
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.01
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.0
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.99
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.98
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.98
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.98
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.98
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.97
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.97
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.96
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.96
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.96
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.96
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.95
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.95
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.95
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.94
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.94
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.93
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.92
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.92
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.92
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.91
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.91
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.9
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.9
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.89
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.88
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.88
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.88
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.87
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.87
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.87
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.87
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.87
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.86
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.86
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.86
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.85
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.85
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.84
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.83
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.83
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.83
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.82
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.8
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.8
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.79
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.79
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.79
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.78
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.78
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.78
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.77
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.77
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.77
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.77
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.77
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.77
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.77
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.76
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.76
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.75
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.75
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.75
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.73
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.73
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.72
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.71
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.71
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.71
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.69
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.68
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.67
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.67
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.67
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.67
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.66
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.65
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.64
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.64
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.63
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.63
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.62
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.62
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.61
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.61
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.61
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.6
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.6
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.59
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.59
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.58
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.57
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.55
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.53
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.53
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.52
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.52
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.52
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.52
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.51
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.51
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.51
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.5
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.5
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.5
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.5
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.48
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.48
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.47
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.46
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.46
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.46
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.46
PHA03376	221	BARF1; Provisional	98.46
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.43
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.43
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.41
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.41
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.39
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.39
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.38
PHA02826	227	IL-1 receptor-like protein; Provisional	98.36
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.35
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.33
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.33
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.32
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.32
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.27
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.25
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.22
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.21
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.2
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.19
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.19
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.16
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.15
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.14
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.13
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.12
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.11
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.09
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.08
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.07
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.07
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.05
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.05
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.05
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.02
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.02
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.01
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.99
smart00409	86	IG Immunoglobulin.	97.99
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.98
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.97
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.97
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.97
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.96
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.95
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.95
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.93
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.92
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.91
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.86
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.85
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.84
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.81
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.8
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.79
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.76
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.75
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.71
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.69
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.69
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.65
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.65
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.65
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.64
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.63
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.57
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.57
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.55
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.55
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.53
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.52
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.5
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	97.49
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.45
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.44
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.42
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.34
PHA02633	63	hypothetical protein; Provisional	97.25
KOG3515|consensus	741		97.24
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.24
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.18
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.16
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.11
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.06
smart00409	86	IG Immunoglobulin.	97.06
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.06
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.06
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	96.96
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	96.96
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.95
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.88
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.83
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.82
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	96.81
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	96.79
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.76
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.66
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	96.64
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	96.62
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	96.62
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	96.45
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	96.4
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	96.4
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	96.4
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	96.33
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	96.31
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.28
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	96.1
smart00407	75	IGc1 Immunoglobulin C-Type.	96.07
smart00406	81	IGv Immunoglobulin V-Type.	96.06
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	96.01
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	95.96
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	95.91
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	95.88
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.72
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	95.62
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	95.49
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	95.35
PHA03042	286	CD47-like protein; Provisional	95.31
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	95.26
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	95.25
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	95.23
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	95.21
PHA02987	189	Ig domain OX-2-like protein; Provisional	95.21
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.14
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	94.97
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	94.91
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	94.91
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	94.87
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.84
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	94.57
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	94.57
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	94.56
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	94.52
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	94.47
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	94.45
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	94.42
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	94.33
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	94.29
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	94.1
KOG1480|consensus	909		93.97
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	93.97
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	93.91
KOG3515|consensus	741		93.88
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	93.44
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	93.42
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	93.27
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	93.1
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	93.07
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	93.06
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	92.98
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	92.77
cd05770	93	IgC_beta2m Class I major histocompatibility comple	92.7
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	92.61
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	92.36
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	92.28
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	92.01
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	91.97
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	91.82
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	91.8
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	91.73
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	91.55
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	91.38
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	91.21
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	90.55
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	90.39
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	90.06
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	89.66
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	89.61
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	89.38
PHA02982	251	hypothetical protein; Provisional	89.22
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	89.18
cd05770	93	IgC_beta2m Class I major histocompatibility comple	88.65
PHA03270	466	envelope glycoprotein C; Provisional	88.46
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	88.31
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	87.83
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	87.39
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	87.15
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	85.17
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	83.79
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	82.19
PHA03269	566	envelope glycoprotein C; Provisional	81.96
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	81.29
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	81.15
COG5475	60	Uncharacterized small protein [Function unknown]	80.04

>KOG3513|consensus

Probab=99.74  E-value=6.9e-17  Score=123.38  Aligned_cols=121  Identities=20%  Similarity=0.199  Sum_probs=106.5

Q ss_pred             eEEEECCEE-ee------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEE
Q psy12134          2 LVIFFSKIE-LL------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI   74 (139)
Q Consensus         2 ~~W~~~~~~-~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l   74 (139)
                      +.|.|.+++ +.      .....|.|.+++.+|+|.|.|.|.|..|. ....+.+.|..+|.+...+++.++..|++++|
T Consensus       273 i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~-~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~  351 (1051)
T KOG3513|consen  273 IKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS-ATHSGHVTVYAPPYWLQKPQDTEADTGSNVTL  351 (1051)
T ss_pred             EEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccc-ceeeEEEEEecCchhhcccceeEecCCCCeEE
Confidence            789998874 22      12588999999999999999999999996 68899999999999998999999999999999


Q ss_pred             EEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         75 ICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        75 ~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      .|.+.|.|.|.+.|  |+..           ...+.|.|..+...|+|.|  .|+|.+|..-.+
T Consensus       352 eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~an  415 (1051)
T KOG3513|consen  352 ECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYAN  415 (1051)
T ss_pred             EEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeee
Confidence            99999999999999  4432           3568999999999999999  899999987765

>KOG3513|consensus

Probab=99.66  E-value=1.4e-15  Score=116.32  Aligned_cols=121  Identities=19%  Similarity=0.266  Sum_probs=100.8

Q ss_pred             CeEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC-CeEEecC--ceEeeCC
Q psy12134          1 MLVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP-PEVSVEK--QWIHTAP   68 (139)
Q Consensus         1 ~~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~-p~~~~~~--~~~~~~~   68 (139)
                      .+.|++||.++..         ..+.|+|.+++..|+|.|+|.|+|..|. .-+.+.|.|... |.+...+  +...+..
T Consensus       362 ~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~-i~anA~L~V~a~~P~f~~~p~~~~~~a~~  440 (1051)
T KOG3513|consen  362 TVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGT-IYANAELKVLASAPVFPLNPVERKVMAVV  440 (1051)
T ss_pred             ceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccce-EeeeeEEEEEccCCCCCCCccceEEEEEe
Confidence            3789999988753         3589999999999999999999999999 588899999864 6665443  3345678


Q ss_pred             CCeEEEEEEeeeCCCcEEEEcC--ee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFDEG--TR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~~~--~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      |.++.+.|...+.|.+.+.|..  ..         ..+++|.|.++..+|+|.|  .|.|.+|....
T Consensus       441 g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~  507 (1051)
T KOG3513|consen  441 GGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAES  507 (1051)
T ss_pred             CCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccce
Confidence            9999999999999999999921  11         3578999999999999999  89999998875

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.58  E-value=9.2e-14  Score=92.40  Aligned_cols=94  Identities=12%  Similarity=0.007  Sum_probs=71.0

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeee-----CCCcEEEE-
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-----NPPAKRFD-   88 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~~~~-   88 (139)
                      +..|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..++      ....+..|+.+.|.|.+.+     .|.|.+.| 
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~-~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~Wy  169 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNIC-EESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWY  169 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcc-eEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEE
Confidence            368999999999999999999997766 5677777775432      2234567999999999863     35678888 


Q ss_pred             -cCeee----------ecceEEEEecCCCCceeEEEEc
Q psy12134         89 -EGTRF----------DEGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        89 -~~~~~----------~~~~l~i~~~~~~d~g~y~~~n  115 (139)
                       ++..+          ..+.|.|.++..+|+|.|.|.-
T Consensus       170 Kng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a  207 (227)
T PHA02826        170 KNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNL  207 (227)
T ss_pred             ECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEE
Confidence             44432          2347999999999999994433

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.58  E-value=1.1e-13  Score=96.83  Aligned_cols=115  Identities=17%  Similarity=0.234  Sum_probs=82.2

Q ss_pred             eEEEECCEEee------ecCCeEEEcccCCCCCEEEEEEEEcCCCCce---eeeEEEEEec---CCeEEecCceEeeCCC
Q psy12134          2 LVIFFSKIELL------YNRESLDLDRVTLKLAGLYQCIASNNIGEST---SKNFIVNVIY---PPEVSVEKQWIHTAPD   69 (139)
Q Consensus         2 ~~W~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~---s~~~~l~v~~---~p~~~~~~~~~~~~~g   69 (139)
                      ++|++++. +.      ...+.|.|.+++.+|+|.|+|.+.|..+...   ...+.|.|..   +|.+ ..+....+..|
T Consensus       158 i~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G  235 (326)
T PHA02785        158 IIWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIG  235 (326)
T ss_pred             EEEccCCc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCC
Confidence            78987542 21      1246899999999999999999999876531   2344565642   3433 33455677789


Q ss_pred             CeEEEEEEeeeCCCc---EEEE--cCeee-------------------------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         70 MRAEIICNVYANPPA---KRFD--EGTRF-------------------------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        70 ~~~~l~C~~~~~p~~---~~~~--~~~~~-------------------------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      +.+.|.|.+.+.|++   .++|  ++..+                         ....|.|.++..+|.|.|  .|.|..
T Consensus       236 ~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~  315 (326)
T PHA02785        236 SNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIP  315 (326)
T ss_pred             CcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEecc
Confidence            999999999988864   6788  44321                         023688999999999999  778876


Q ss_pred             C
Q psy12134        118 G  118 (139)
Q Consensus       118 g  118 (139)
                      |
T Consensus       316 ~  316 (326)
T PHA02785        316 S  316 (326)
T ss_pred             C
Confidence            3

>KOG4222|consensus

Probab=99.57  E-value=5.1e-15  Score=113.26  Aligned_cols=122  Identities=20%  Similarity=0.171  Sum_probs=106.0

Q ss_pred             eEEEECCEEee---------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeE
Q psy12134          2 LVIFFSKIELL---------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA   72 (139)
Q Consensus         2 ~~W~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~   72 (139)
                      ++|.|+|.++.         ..++.|.|.++..+|.|.|.|.+.|+.|...+....|.|.++|-+...+....+..|..+
T Consensus       164 vSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~  243 (1281)
T KOG4222|consen  164 VSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAA  243 (1281)
T ss_pred             ceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeeccccc
Confidence            78999998875         346899999999999999999999999998899999999999999888888888899999


Q ss_pred             EEEEEeeeCCCcEEEEcCee-----------eecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         73 EIICNVYANPPAKRFDEGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        73 ~l~C~~~~~p~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      .+.|.+.+.|.|.+.|.+..           .+..++.|.++...|+|+|  .+.|.+|.-..+
T Consensus       244 ~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~as  307 (1281)
T KOG4222|consen  244 EFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEAS  307 (1281)
T ss_pred             ccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccc
Confidence            99999999999999884432           1336788899999999999  788888776554

>KOG4194|consensus

Probab=99.55  E-value=5.6e-14  Score=102.47  Aligned_cols=107  Identities=19%  Similarity=0.267  Sum_probs=95.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcCee---
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTR---   92 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~~~---   92 (139)
                      +.|.+.+|+-.|.|.|+|.+.|..|+..+..+.|.|...|.+...+.+.....|....|.|.+.|-|.|.+-|.+..   
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd  653 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD  653 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence            78999999999999999999999999899999999999999999998889999999999999999999999993322   


Q ss_pred             e------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         93 F------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        93 ~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +            .+..+.|.++..+|.|.|  .|+|..|.-+.
T Consensus       654 FPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isa  697 (873)
T KOG4194|consen  654 FPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISA  697 (873)
T ss_pred             CchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceee
Confidence            1            346789999999999999  78888776543

>KOG4221|consensus

Probab=99.51  E-value=7.4e-14  Score=107.65  Aligned_cols=121  Identities=18%  Similarity=0.216  Sum_probs=102.1

Q ss_pred             eEEEECCEEeeec--------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEE
Q psy12134          2 LVIFFSKIELLYN--------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE   73 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~   73 (139)
                      |.|+||+..+..+        .+.|.|.+++..|+|.|+|+|.|.... ..+.+.|.|+.+|.+...+....+.++.++.
T Consensus       269 v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~-idasaev~V~a~P~~~~~p~~l~A~e~~die  347 (1381)
T KOG4221|consen  269 VKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDS-IDASAEVTVLAPPGFTKAPTTLVAHESMDIE  347 (1381)
T ss_pred             eEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcc-cccceEEEEEcCCCCCCCCcceeeeecccee
Confidence            7899999887665        478999999999999999999996655 5788899999999999888877888899999


Q ss_pred             EEEEeeeCCCcEEEE--cCeee---------ecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         74 IICNVYANPPAKRFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        74 l~C~~~~~p~~~~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      |.|.+.+.|.+.+.|  |+...         ..+.+.|..+-..|.|.|  .+.|.+|+.+..
T Consensus       348 ~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~  410 (1381)
T KOG4221|consen  348 FECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAA  410 (1381)
T ss_pred             EeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccch
Confidence            999999999999988  44431         223488888889999999  788888888765

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.51  E-value=5.3e-13  Score=93.38  Aligned_cols=119  Identities=13%  Similarity=0.127  Sum_probs=84.8

Q ss_pred             eEEEECCEEe----ee-cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC--CeEEecCceEeeCCCCeEEE
Q psy12134          2 LVIFFSKIEL----LY-NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP--PEVSVEKQWIHTAPDMRAEI   74 (139)
Q Consensus         2 ~~W~~~~~~~----~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~--p~~~~~~~~~~~~~g~~~~l   74 (139)
                      ++|+|++...    .. .+..|.|.++..+|+|.|+|.+.|..+. .+..+.|.|...  +.+........+.+|..+.+
T Consensus        63 i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i  141 (326)
T PHA02785         63 ILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYC-DMMSLNLTIVSVSESNIDLISYPQIVNERSTGEM  141 (326)
T ss_pred             EEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcc-eEEEEEEEEEecCCCccceeeccceecccCcEEE
Confidence            7899987532    22 2345889999999999999999998876 456777777543  32322222334568999999


Q ss_pred             EEE-----eeeCCCcEEEEcCee---------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         75 ICN-----VYANPPAKRFDEGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        75 ~C~-----~~~~p~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .|.     ..+.|++.+.|.+..         ...+.|.|.++..+|.|.|  .+.|..|...
T Consensus       142 ~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~  204 (326)
T PHA02785        142 VCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKT  204 (326)
T ss_pred             ECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEE
Confidence            997     245788888883321         1246899999999999999  6777766543

>KOG4194|consensus

Probab=99.49  E-value=2.8e-13  Score=98.90  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=93.8

Q ss_pred             eEEEECCEE-ee----------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCC
Q psy12134          2 LVIFFSKIE-LL----------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDM   70 (139)
Q Consensus         2 ~~W~~~~~~-~~----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~   70 (139)
                      +.|-|+|+. .+          ..+..+.|.+++.+|+|.|+|.|.|..|. .++.++|.|.+.|.+..+..+..+..|+
T Consensus       644 IawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isanAtL~V~e~p~f~~PL~~~~V~~ge  722 (873)
T KOG4194|consen  644 IAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISANATLTVLETPSFSIPLEDQLVVVGE  722 (873)
T ss_pred             eeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccc-eeeceEEEEecCCcccccccceEEEecc
Confidence            568888775 21          13467889999999999999999999999 6999999999999998888888888999


Q ss_pred             eEEEEEEeeeCCC-cEEEEcCee----------e--ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         71 RAEIICNVYANPP-AKRFDEGTR----------F--DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        71 ~~~l~C~~~~~p~-~~~~~~~~~----------~--~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      ++.++|.+.+.|+ |...|.+..          .  .+..+.+.....+|.|.|  ...|.+|.
T Consensus       723 t~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~  786 (873)
T KOG4194|consen  723 TLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGT  786 (873)
T ss_pred             eEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccc
Confidence            9999999999887 777773322          1  223577888889999999  44455544

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.41  E-value=1.1e-12  Score=74.34  Aligned_cols=53  Identities=23%  Similarity=0.337  Sum_probs=46.5

Q ss_pred             eEEEECCEEeee--------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY--------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ++|+++|.++..              ..+.|.|.+++..|+|+|+|.|+|..+. .+..+.|.|..+|
T Consensus        19 ~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~-~~a~a~L~V~~pP   85 (85)
T cd05853          19 FTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDK-LSAAADLIVRGPP   85 (85)
T ss_pred             EEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCc-eEEEEEEEEecCC
Confidence            789999988852              1257999999999999999999999988 6899999999876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>KOG4221|consensus

Probab=99.39  E-value=1.4e-11  Score=95.50  Aligned_cols=114  Identities=12%  Similarity=0.147  Sum_probs=92.0

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe------EEecCceEeeCC
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE------VSVEKQWIHTAP   68 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~------~~~~~~~~~~~~   68 (139)
                      +.|.+++.++..       .++.|.|.+++..|.|.|+|.+.+......+..+.|+|...|.      |...+....+..
T Consensus       172 i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~  251 (1381)
T KOG4221|consen  172 IMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVE  251 (1381)
T ss_pred             eEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCcccccc
Confidence            689999886644       3588999999999999999999998866678888999885543      334455667788


Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecCCCCceeE--EEEc
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~~~d~g~y--~~~n  115 (139)
                      |+++.|.|.+.+.|.|.+.|  ++...          ....|.|.+++..|.|.|  .|.|
T Consensus       252 g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn  312 (1381)
T KOG4221|consen  252 GDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATN  312 (1381)
T ss_pred             CCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecC
Confidence            99999999999999999999  44331          245788999999999999  4555

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.36  E-value=3.9e-11  Score=74.30  Aligned_cols=71  Identities=21%  Similarity=0.286  Sum_probs=58.6

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCc--EEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      +|.|.+++..|+|.|.|.+.+..+. ....+.|.|..+|.+...+.......|..+.|.|.+.+.+|+  .+.|
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W   74 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEW   74 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEE
Confidence            6899999999999999999988777 588899999999988765544344468899999999997543  6788

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.32  E-value=1.3e-11  Score=66.95  Aligned_cols=49  Identities=18%  Similarity=0.189  Sum_probs=41.0

Q ss_pred             eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|+|.++..  ..+.|.|.++..+|+|.|+|.|+|..|. .+..+.+.+
T Consensus        15 v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~l   65 (67)
T cd05863          15 FQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAG-LEKRISLEL   65 (67)
T ss_pred             EEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCcc-EEEEEEEEE
Confidence            789999988854  3468999999999999999999999987 466666554

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.31  E-value=1.5e-11  Score=69.88  Aligned_cols=53  Identities=21%  Similarity=0.278  Sum_probs=45.0

Q ss_pred             eEEEECCEEeee--------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY--------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ++|++++.++..              ..+.|.|.+++..|+|.|+|.|.|..|. .+..+.|.|..+|
T Consensus        19 v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~-~~~~~~L~V~~~P   85 (85)
T cd05854          19 FTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDS-ASASATLVVRGPP   85 (85)
T ss_pred             EEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCC-EEEEEEEEEECCC
Confidence            689999877532              1367999999999999999999999998 6889999998765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>KOG4222|consensus

Probab=99.29  E-value=1e-11  Score=95.66  Aligned_cols=131  Identities=22%  Similarity=0.249  Sum_probs=102.0

Q ss_pred             eEEEECCEEeeec-------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEE
Q psy12134          2 LVIFFSKIELLYN-------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI   74 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l   74 (139)
                      ++|.+++..+...       ..+|.|.+++..|.|.|.|.+.|.+|. .+....|.|+.+|.+..-+....+..|-.++|
T Consensus       257 Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~-l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~  335 (1281)
T KOG4222|consen  257 VRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGG-LEASATLTVQAPPSFGKKPRDQKVALGGTVTF  335 (1281)
T ss_pred             eeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccc-cccccceEEecCcccccccCccccccCceEEe
Confidence            6788877665432       368899999999999999999999998 69999999999999987777778888999999


Q ss_pred             EEEeeeCCCcEEEEcCee-------------------eecceEEEEecCCCCceeEEE--EcccCCCCCC-CCcceeeee
Q psy12134         75 ICNVYANPPAKRFDEGTR-------------------FDEGTVTAKVLQPFSERTLSV--QDKIGPGPDS-NLRPSAYMA  132 (139)
Q Consensus        75 ~C~~~~~p~~~~~~~~~~-------------------~~~~~l~i~~~~~~d~g~y~~--~n~~g~~~~~-~~~~~~~~~  132 (139)
                      .|.+.++|+|.+||....                   ...+.|.|.+++..|.|.|.|  .+..|+...- .++....++
T Consensus       336 pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~  415 (1281)
T KOG4222|consen  336 PCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLT  415 (1281)
T ss_pred             eeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeec
Confidence            999999999999993221                   123479999999999999933  5555554432 334444444


Q ss_pred             C
Q psy12134        133 D  133 (139)
Q Consensus       133 ~  133 (139)
                      +
T Consensus       416 ~  416 (1281)
T KOG4222|consen  416 D  416 (1281)
T ss_pred             c
Confidence            4

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.28  E-value=3.3e-11  Score=70.32  Aligned_cols=54  Identities=13%  Similarity=0.180  Sum_probs=46.5

Q ss_pred             CeEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          1 MLVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         1 ~~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      .+.|+|++.++...          .+.|.|.++..+|+|.|+|.+.|..|. ....+.|.|...|
T Consensus        31 ~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~-~~~~~~l~V~~~P   94 (98)
T cd05762          31 TCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGS-RQAQVNLTVVDKP   94 (98)
T ss_pred             ceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCc-eeEEEEEEEecCC
Confidence            37899999887421          377999999999999999999999999 5789999998766

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.27  E-value=3.1e-11  Score=68.57  Aligned_cols=53  Identities=25%  Similarity=0.361  Sum_probs=45.2

Q ss_pred             eEEEECCEEeee--------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY--------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ++|++++.++..              ..+.|.|.+++..|+|.|+|.+.|..|. .+..+.|.|..+|
T Consensus        19 ~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~pP   85 (85)
T cd04970          19 FTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASADLIVRGPP   85 (85)
T ss_pred             EEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCc-EEEEEEEEEECCC
Confidence            589999887642              2367999999999999999999999988 5889999998876

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.20  E-value=9.1e-11  Score=65.08  Aligned_cols=49  Identities=24%  Similarity=0.243  Sum_probs=40.0

Q ss_pred             eEEEECCEEeeec---------C---CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN---------R---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+...         .   ..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        15 i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~a~L~V   75 (75)
T cd05892          15 IFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGV-ATCHARLDV   75 (75)
T ss_pred             EEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCe-EEEEEEEeC
Confidence            7899999876421         1   26999999999999999999999998 466777654

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.20  E-value=8e-11  Score=64.42  Aligned_cols=48  Identities=21%  Similarity=0.236  Sum_probs=38.7

Q ss_pred             eEEEECCEEeeec-----CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134          2 LVIFFSKIELLYN-----RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   50 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~   50 (139)
                      +.|+|++.++...     +..|.|.++..+|+|.|+|.+.|..|.. +...++.
T Consensus        15 v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~-~~~~t~~   67 (70)
T cd05864          15 VKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKE-EQRHTFQ   67 (70)
T ss_pred             EEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCce-eeEEEEE
Confidence            7899999887542     3679999999999999999999999873 4444443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.20  E-value=7.6e-11  Score=69.12  Aligned_cols=51  Identities=24%  Similarity=0.271  Sum_probs=42.3

Q ss_pred             CeEEEECCEEeeec----------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          1 MLVIFFSKIELLYN----------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         1 ~~~W~~~~~~~~~~----------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      .+.|+|+|.++...                .+.|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|.
T Consensus        34 ~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~-~~~t~~l~V~  100 (101)
T cd05859          34 QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV-KSYTFALQIQ  100 (101)
T ss_pred             ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce-EEEEEEEEEE
Confidence            37899999986422                257999999999999999999999988 5777777764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.19  E-value=1.3e-10  Score=64.18  Aligned_cols=49  Identities=24%  Similarity=0.311  Sum_probs=40.3

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+..       ..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        18 v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~~   73 (73)
T cd05852          18 FSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGK-ANSTGVLSV   73 (73)
T ss_pred             EEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCc-eeEEEEEEC
Confidence            789999876532       3478999999999999999999999988 466666654

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.18  E-value=1.2e-10  Score=65.58  Aligned_cols=48  Identities=27%  Similarity=0.307  Sum_probs=38.2

Q ss_pred             CeEEEECCEEeeec-----------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          1 MLVIFFSKIELLYN-----------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         1 ~~~W~~~~~~~~~~-----------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      .++|+|+|.++...                 .+.|.|.+++..|+|.|+|.|.|..|. .+..+.+
T Consensus        14 ~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~~   78 (81)
T cd04971          14 TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQ-DSKSISA   78 (81)
T ss_pred             cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCC-eeeEEEe
Confidence            37999999876432                 235999999999999999999999988 4555444

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.18  E-value=1.3e-10  Score=63.75  Aligned_cols=49  Identities=18%  Similarity=0.218  Sum_probs=40.1

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|+|.++..      ....|.|.+++.+|+|.|+|.+.|..|. .+..+.+.+
T Consensus        15 v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~~   69 (71)
T cd04976          15 IQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAK-LEKRLTFTL   69 (71)
T ss_pred             EEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCcc-EEEEEEEEE
Confidence            789999987642      3578999999999999999999999887 455555554

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.18  E-value=1e-10  Score=64.69  Aligned_cols=49  Identities=24%  Similarity=0.333  Sum_probs=40.9

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|+|++..+..       ..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        19 i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~V   74 (74)
T cd05745          19 IAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGS-QRTVAQLTV   74 (74)
T ss_pred             EEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCc-eeEEEEEeC
Confidence            789999987643       2468999999999999999999999998 577777654

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.18  E-value=1.6e-10  Score=66.45  Aligned_cols=50  Identities=32%  Similarity=0.436  Sum_probs=42.8

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+..       ..+.|.|.+++.+|+|.|.|.|.|..|...+..+.|.|
T Consensus        34 i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          34 IWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            789999887532       24689999999999999999999999987788888876

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.18  E-value=1.2e-10  Score=64.64  Aligned_cols=49  Identities=24%  Similarity=0.152  Sum_probs=40.0

Q ss_pred             eEEEECCEEeeec--------C----CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN--------R----ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~----~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|+|++.++...        .    ..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        15 v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~V   75 (75)
T cd05893          15 IFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGI-VSCTARLDV   75 (75)
T ss_pred             EEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCE-EEEEEEEeC
Confidence            7899998876431        1    15899999999999999999999998 577777764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.18  E-value=1.8e-10  Score=63.66  Aligned_cols=49  Identities=22%  Similarity=0.170  Sum_probs=40.2

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+...          .+.|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        16 v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   74 (74)
T cd05748          16 VTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE-KSATINVKV   74 (74)
T ss_pred             EEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc-EEEEEEEEC
Confidence            7899999876321          367999999999999999999999988 577776654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.17  E-value=1.8e-10  Score=65.89  Aligned_cols=53  Identities=19%  Similarity=0.200  Sum_probs=43.9

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ++|+|++..+...               .+.|.|.++..+|+|.|+|.|.|..|. ....+.|.|..+|
T Consensus        18 i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~L~V~~~P   85 (88)
T cd05735          18 VRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE-DRGIIQLTVQEPP   85 (88)
T ss_pred             EEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc-ceEEEEEEEeCCC
Confidence            7899998665221               156999999999999999999999998 5888899998765

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.16  E-value=2.4e-10  Score=63.26  Aligned_cols=50  Identities=20%  Similarity=0.292  Sum_probs=42.2

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++.++..         ..+.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        15 v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738          15 ITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             EEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            789999877642         24689999999999999999999999987777777776

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.16  E-value=2.2e-10  Score=64.05  Aligned_cols=48  Identities=31%  Similarity=0.349  Sum_probs=38.2

Q ss_pred             CeEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          1 MLVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         1 ~~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      .++|+|+|.++...               .+.|.|.+++.+|+|.|+|.|+|..|. .+..+.+
T Consensus        14 ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~-~~~~~~~   76 (79)
T cd05855          14 TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGE-DEKNVSA   76 (79)
T ss_pred             ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcc-cceEEEe
Confidence            37999999887421               247999999999999999999999988 3555444

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.14  E-value=3.6e-10  Score=62.84  Aligned_cols=49  Identities=24%  Similarity=0.227  Sum_probs=41.1

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|+|+|.++..         ..+.|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus        18 i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   75 (76)
T cd05867          18 ITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGN-LLANAHVHV   75 (76)
T ss_pred             EEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCe-EEEEEEEEE
Confidence            789999987642         2478999999999999999999999988 567777765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.14  E-value=2.8e-10  Score=62.43  Aligned_cols=49  Identities=18%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|+|++..+..       ....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        16 v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~V   71 (71)
T cd05723          16 VKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGN-VQASAQLII   71 (71)
T ss_pred             EEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCE-EEEEEEEEC
Confidence            789999977532       2457888999999999999999999998 577777654

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.13  E-value=2.7e-10  Score=62.53  Aligned_cols=49  Identities=29%  Similarity=0.308  Sum_probs=40.7

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+..       ....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        15 v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   70 (71)
T cd05876          15 VHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGS-ARHHYTVTV   70 (71)
T ss_pred             EEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence            789999865532       3478999999999999999999999998 577777766

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.12  E-value=3.8e-10  Score=62.59  Aligned_cols=49  Identities=27%  Similarity=0.225  Sum_probs=39.8

Q ss_pred             eEEEECCEEeeec--------C----CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN--------R----ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~----~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|+|++.++...        .    ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        15 v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v   75 (75)
T cd05744          15 IFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV-VSCNARLDV   75 (75)
T ss_pred             EEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCc-EEEEEEEeC
Confidence            7899999876421        1    25999999999999999999999998 566676654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.12  E-value=3.1e-10  Score=61.87  Aligned_cols=49  Identities=27%  Similarity=0.306  Sum_probs=40.0

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|+++.+..      ....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        15 v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   69 (69)
T cd05725          15 VLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK-IEASASLTV   69 (69)
T ss_pred             EEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCc-EEEEEEEEC
Confidence            789998765432      3578999999999999999999999988 466666654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.12  E-value=3.8e-10  Score=64.55  Aligned_cols=69  Identities=14%  Similarity=0.119  Sum_probs=55.6

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|  ++..        ..++.|.|.++..+|.|.|  .|.|.+|+..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   80 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDK   80 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceE
Confidence            35666666777888999999999999999999988  2221        2345799999999999999  8899999765


Q ss_pred             C
Q psy12134        122 D  122 (139)
Q Consensus       122 ~  122 (139)
                      .
T Consensus        81 ~   81 (88)
T cd05851          81 H   81 (88)
T ss_pred             E
Confidence            3

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.12  E-value=3e-10  Score=66.55  Aligned_cols=50  Identities=26%  Similarity=0.251  Sum_probs=42.0

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|+|.++...               .+.|.|.++.++|+|.|+|.|.|..|. .+..+.|.|.
T Consensus        36 v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~-~~~t~~L~V~  100 (101)
T cd04975          36 INWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS-KSLTFELYVN  100 (101)
T ss_pred             cEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc-EEEEEEEEEE
Confidence            7899999876421               256999999999999999999999998 5788888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.12  E-value=4e-10  Score=62.10  Aligned_cols=49  Identities=24%  Similarity=0.234  Sum_probs=40.6

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|+|++..+..       ....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        18 v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   73 (73)
T cd04969          18 ISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGK-ANSTGSLSV   73 (73)
T ss_pred             EEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCc-eEEEEEEEC
Confidence            789999987632       2467999999999999999999999988 467766654

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.12  E-value=4.2e-10  Score=64.06  Aligned_cols=49  Identities=16%  Similarity=0.228  Sum_probs=40.4

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++.++...           .+.|.|.++.++|+|.|+|.|.|..|. .+..+.|.|
T Consensus        27 v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~~l~V   86 (86)
T cd05894          27 VTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGE-DHASLFVKV   86 (86)
T ss_pred             EEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCc-EEEEEEEEC
Confidence            7899999877431           257999999999999999999999998 566666654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.11  E-value=4.5e-10  Score=61.25  Aligned_cols=47  Identities=21%  Similarity=0.357  Sum_probs=38.7

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      ++|+|++.++..       ..+.|.|.++..+|+|.|+|.+.|..|. .+..+.|
T Consensus        15 i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~L   68 (69)
T cd05746          15 ITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGY-ASVSMVL   68 (69)
T ss_pred             EEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCc-EEEEEEe
Confidence            789999877642       2578999999999999999999999988 4555554

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.09  E-value=1.2e-09  Score=63.67  Aligned_cols=78  Identities=15%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      |.|...+....+..|+.+.|.|.+.|.|++.+.|  ++..+            ....|.|..+..+|.|.|  .+.|.+|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            3455556667788999999999999999999988  33321            235689999999999999  8999999


Q ss_pred             CCCCCCCcceeeeeCCC
Q psy12134        119 PGPDSNLRPSAYMADAP  135 (139)
Q Consensus       119 ~~~~~~~~~~~~~~~~~  135 (139)
                      ....   +..+.+-+.|
T Consensus        81 ~~~~---~~~l~V~~~P   94 (98)
T cd05762          81 SRQA---QVNLTVVDKP   94 (98)
T ss_pred             ceeE---EEEEEEecCC
Confidence            8765   3444554444

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.09  E-value=8.5e-10  Score=61.35  Aligned_cols=50  Identities=24%  Similarity=0.398  Sum_probs=41.8

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ++|+|+|.++..         .+..|.|.+++..|+|.|+|.|.|..|. ....+.|.|+
T Consensus        18 i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v~   76 (76)
T cd05868          18 ISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVNVL   76 (76)
T ss_pred             EEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEEeC
Confidence            789999987632         2357999999999999999999999998 5788887763

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.08  E-value=8.1e-10  Score=61.57  Aligned_cols=52  Identities=29%  Similarity=0.415  Sum_probs=40.5

Q ss_pred             CeEEEECCEEeeec---------CCeEEEcccCCCCCEEEEEEEEcCCCCce-eeeEEEEEe
Q psy12134          1 MLVIFFSKIELLYN---------RESLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVI   52 (139)
Q Consensus         1 ~~~W~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~-s~~~~l~v~   52 (139)
                      .+.|+|+|.++...         .+.|.|.+++.+|+|.|.|.+.|..|... +..++|.|.
T Consensus        14 ~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760          14 TYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             cEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            37899999876332         35799999999999999999999998742 355666553

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.07  E-value=9.5e-10  Score=60.91  Aligned_cols=49  Identities=20%  Similarity=0.249  Sum_probs=40.0

Q ss_pred             eEEEECCEEee-----------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELL-----------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|+|++....           ..+..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        15 v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V   74 (75)
T cd05763          15 IAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV   74 (75)
T ss_pred             EEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence            78999875311           12468999999999999999999999988 577888776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.07  E-value=6.5e-10  Score=63.56  Aligned_cols=49  Identities=18%  Similarity=0.129  Sum_probs=40.4

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|+|++.++..      .+..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        33 v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V   87 (88)
T cd05851          33 IRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK-DKHQARVYV   87 (88)
T ss_pred             EEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc-eEEEEEEEE
Confidence            789998765532      3468999999999999999999999998 577777766

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.06  E-value=7.6e-10  Score=60.50  Aligned_cols=49  Identities=29%  Similarity=0.379  Sum_probs=40.2

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|+++.+..       ....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        15 v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   70 (71)
T cd05731          15 ISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGS-ARHTISVTV   70 (71)
T ss_pred             EEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCce-EEEEEEEEE
Confidence            789999876532       2368999999999999999999999987 467776665

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.06  E-value=1.1e-09  Score=60.65  Aligned_cols=49  Identities=27%  Similarity=0.280  Sum_probs=41.3

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+..         ....|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus        18 i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V   75 (76)
T cd04978          18 ITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGY-LLANAFVHV   75 (76)
T ss_pred             EEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCe-EEEeEEEEE
Confidence            789999886632         2478999999999999999999999988 577777776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.05  E-value=1.6e-09  Score=62.68  Aligned_cols=50  Identities=18%  Similarity=0.215  Sum_probs=42.0

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|++++..+..         ..+.|.|.+++.+|+|.|+|.|.|..|. ....+.|.|.
T Consensus        35 v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~   93 (95)
T cd05730          35 MTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE-QEAEIHLKVF   93 (95)
T ss_pred             EEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEEEEE
Confidence            789999876532         2357999999999999999999999998 5788888775

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.05  E-value=1e-09  Score=62.20  Aligned_cols=50  Identities=22%  Similarity=0.268  Sum_probs=40.9

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+..        ..+.|.|.+++.+|+|.|+|.+.|..|...+..+.|.|
T Consensus        29 i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V   86 (86)
T cd05724          29 VSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV   86 (86)
T ss_pred             EEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence            789999877543        24689999999999999999999999886666666653

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.05  E-value=1.2e-09  Score=61.92  Aligned_cols=49  Identities=20%  Similarity=0.326  Sum_probs=40.2

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++.++...           ...|.|.++..+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        26 i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v   85 (85)
T cd05857          26 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDV   85 (85)
T ss_pred             EEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCE-EEEEEEEEC
Confidence            7899999876421           246889999999999999999999998 577777764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.03  E-value=1.1e-09  Score=63.05  Aligned_cols=49  Identities=20%  Similarity=0.280  Sum_probs=38.7

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++.++...           ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        33 v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~v   92 (92)
T cd05737          33 VSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG-ETVDVTVSV   92 (92)
T ss_pred             EEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCc-ceEEEEEeC
Confidence            7899999776321           136999999999999999999999988 455555543

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.02  E-value=1.8e-09  Score=64.18  Aligned_cols=53  Identities=21%  Similarity=0.234  Sum_probs=43.8

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccC-CCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ++|+|++..+...               .+.|.|.++. .+|.|.|+|.|.|..|. ....+.|.|..+|
T Consensus        40 i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~i~L~~~~~p  108 (109)
T cd05773          40 FRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE-DSLDIQLVSTSRP  108 (109)
T ss_pred             EEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc-CcEEEEEEecCCC
Confidence            7899998776421               2578999997 58999999999999999 5888999888766

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.02  E-value=1.8e-09  Score=61.66  Aligned_cols=50  Identities=16%  Similarity=0.175  Sum_probs=41.1

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ++|+|++..+..      ....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|+
T Consensus        33 v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   88 (88)
T cd04968          33 IKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGK-DTHQGRIYVQ   88 (88)
T ss_pred             EEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCc-EEEEEEEEEC
Confidence            789998765432      3578999999999999999999999998 5777777663

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.02  E-value=1.4e-09  Score=61.79  Aligned_cols=49  Identities=22%  Similarity=0.347  Sum_probs=41.0

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++.++..      ..+.|.|.++..+|+|.|+|.|.|..|. ....+.|.|
T Consensus        31 v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   85 (85)
T cd05728          31 YRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGT-IYASAELAV   85 (85)
T ss_pred             EEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCe-EEEEEEEEC
Confidence            789999987643      3578999999999999999999999988 577776654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.01  E-value=1.1e-09  Score=61.32  Aligned_cols=48  Identities=23%  Similarity=0.378  Sum_probs=38.0

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   50 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~   50 (139)
                      +.|+|+|.++..      .+..|.|.++..+|+|.|+|.+.|..|. ....+.|.
T Consensus        25 v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~-~~~~~~v~   78 (79)
T cd04973          25 INWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGS-DTTYFSVN   78 (79)
T ss_pred             EEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCc-ccEEEEEe
Confidence            789999977643      2467999999999999999999998877 34445444

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.00  E-value=1.7e-09  Score=62.77  Aligned_cols=50  Identities=22%  Similarity=0.371  Sum_probs=38.1

Q ss_pred             eEEEE-CCEEeee---------c---CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFF-SKIELLY---------N---RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~-~~~~~~~---------~---~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|++ ++..+..         .   .+.|.|.+++.+|+|.|+|.|.|..+...++++.|.|
T Consensus        33 i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          33 ISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            78998 6654322         1   1579999999999999999999997433677777765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.99  E-value=1.6e-09  Score=59.50  Aligned_cols=38  Identities=18%  Similarity=0.178  Sum_probs=32.6

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      +.|+|++.++..       .+..|.|.+++.+|+|.|+|.++|..
T Consensus        15 v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~   59 (72)
T cd07702          15 VIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQ   59 (72)
T ss_pred             EEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccc
Confidence            789999987642       24589999999999999999999975

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.98  E-value=1.6e-09  Score=60.80  Aligned_cols=49  Identities=24%  Similarity=0.378  Sum_probs=39.5

Q ss_pred             eEEEECCEEeeec--------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN--------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+...        ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        26 i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~v   82 (82)
T cd05856          26 ITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE-INATYKVDV   82 (82)
T ss_pred             EEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCcc-EEEEEEEeC
Confidence            7899998765321        257999999999999999999999987 566666654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.98  E-value=2e-09  Score=59.75  Aligned_cols=40  Identities=23%  Similarity=0.450  Sum_probs=34.1

Q ss_pred             eEEEECCEEeeec--------------CCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELLYN--------------RESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      +.|++++.++...              .+.|.|.++..+|+|.|+|.+.|..|.
T Consensus        16 ~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~   69 (76)
T cd05895          16 FKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGN   69 (76)
T ss_pred             eEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence            6899998876421              256999999999999999999999877

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.98  E-value=1.5e-09  Score=60.64  Aligned_cols=46  Identities=17%  Similarity=0.191  Sum_probs=38.6

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+......|.|.++ .+|+|.|+|++.|.   ..+..+.|.|
T Consensus        33 ~~W~kng~~l~~~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~l~V   78 (78)
T cd05752          33 TQWYHNGKLLETTTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVHLEV   78 (78)
T ss_pred             EEEEECCEEeeccCCeEEEeec-ccCCEEeEEECCCC---cCCCCEEEeC
Confidence            6899999988777789999999 99999999999875   2466666654

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.98  E-value=4.5e-09  Score=60.53  Aligned_cols=40  Identities=20%  Similarity=0.111  Sum_probs=34.9

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      +.|+|++.++..      .++.|.|.++..+|+|.|+|.+.|..+.
T Consensus        32 i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~   77 (92)
T cd05757          32 VQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNG   77 (92)
T ss_pred             EEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence            789999988754      3478999999999999999999998765

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.97  E-value=4.5e-09  Score=60.51  Aligned_cols=69  Identities=17%  Similarity=0.213  Sum_probs=55.2

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|  ++..+            ....|.|..+..+|.|.|  .+.|.+
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   82 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE   82 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence            46666666777889999999999999999999988  33221            124789999999999999  889999


Q ss_pred             CCCCC
Q psy12134        118 GPGPD  122 (139)
Q Consensus       118 g~~~~  122 (139)
                      |....
T Consensus        83 G~~~~   87 (92)
T cd05747          83 GKQEA   87 (92)
T ss_pred             CCEeE
Confidence            87654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.97  E-value=5.6e-09  Score=57.92  Aligned_cols=50  Identities=24%  Similarity=0.328  Sum_probs=41.3

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++..+..          ....|.|.++..+|.|.|+|.+.|..|. ....+.|.|.
T Consensus        15 v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   74 (76)
T cd05736          15 LTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV-DEDISSLFVE   74 (76)
T ss_pred             EEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence            789999887532          1357999999999999999999999988 4777777774

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.96  E-value=2.5e-09  Score=61.87  Aligned_cols=49  Identities=20%  Similarity=0.244  Sum_probs=38.9

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|+|++..+..          .+..|.|.++..+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        36 v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~-~~~~~~L~v   94 (94)
T cd05756          36 LTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYC-MKVSISLTV   94 (94)
T ss_pred             EEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCcc-EEEEEEEEC
Confidence            789999865321          2468999999999999999999999877 466666654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.96  E-value=3.2e-09  Score=61.76  Aligned_cols=49  Identities=31%  Similarity=0.399  Sum_probs=38.9

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|++++..+...               .+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        34 v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v   97 (97)
T cd05869          34 ITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQ-DSQSMYLEV   97 (97)
T ss_pred             EEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCC-eeEEEEEEC
Confidence            7899987654210               147999999999999999999999998 577777654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.96  E-value=5.2e-09  Score=59.72  Aligned_cols=68  Identities=12%  Similarity=0.048  Sum_probs=53.5

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc--Cee--------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE--GTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~--~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.+...+....+.+|+.+.|.|.+.+.|.|.+.|.  +..        ...+.|.|..+..+|.|.|  .+.|.+|....
T Consensus         2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   81 (88)
T cd04968           2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTH   81 (88)
T ss_pred             CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEE
Confidence            34445556667788999999999999999999882  221        2457899999999999999  88999988643

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.96  E-value=3.8e-09  Score=60.84  Aligned_cols=50  Identities=14%  Similarity=0.403  Sum_probs=38.7

Q ss_pred             eEEEEC-CEEeee-------cC---CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFS-KIELLY-------NR---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~-~~~~~~-------~~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+++ +..+..       .+   ..|.|.++..+|+|.|+|.|.|..|......+.|.+
T Consensus        31 v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          31 IDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             EEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            789985 544321       12   379999999999999999999999886667777665

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.95  E-value=5.2e-09  Score=59.98  Aligned_cols=51  Identities=18%  Similarity=0.160  Sum_probs=41.8

Q ss_pred             eEEEECCEEee---------------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELL---------------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~---------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|+|++..+.               ...+.|.|.+++.+|+|.|+|.+.|..|. ....+.|.|..
T Consensus        18 v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~   83 (90)
T cd05726          18 IFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYLEVTD   83 (90)
T ss_pred             EEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEEEEee
Confidence            78999876421               11467999999999999999999999998 57888888875

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.95  E-value=5.3e-09  Score=60.40  Aligned_cols=49  Identities=22%  Similarity=0.274  Sum_probs=39.0

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccC-CCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVN   50 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~~l~   50 (139)
                      ++|+|++.++..       .++.|.|.++. .+|+|.|+|.|+|..|...+..++|.
T Consensus        36 i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          36 YKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             EEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence            789999987642       24789999885 58999999999999998666666553

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.95  E-value=6e-09  Score=60.26  Aligned_cols=49  Identities=22%  Similarity=0.315  Sum_probs=38.7

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccC-CCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVN   50 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~~l~   50 (139)
                      ++|+++|.++..        ..+.|.|.++. ..|+|.|+|.|.|..|...+..+.|.
T Consensus        36 i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          36 YRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             EEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence            789999987742        24678888765 59999999999999998766666553

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.94  E-value=3.2e-09  Score=58.65  Aligned_cols=55  Identities=11%  Similarity=0.232  Sum_probs=45.9

Q ss_pred             CCCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         68 PDMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +|+++.|.|.+.+.|.|.+.|  ++..         ...+.|.|..+..+|.|.|  .|.|.+|+...
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   68 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRT   68 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeE
Confidence            589999999999999999988  3322         1345799999999999999  89999998664

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.94  E-value=3.9e-09  Score=58.80  Aligned_cols=48  Identities=23%  Similarity=0.326  Sum_probs=37.1

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCC----CCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTL----KLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~----~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      ++|+|++.++..          ..+.|.|.++..    +|+|.|+|.|.|..|...+..+.|
T Consensus        15 v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733          15 FSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             EEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            789999887532          247888888753    689999999999999865655554

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.93  E-value=7.6e-09  Score=59.30  Aligned_cols=49  Identities=18%  Similarity=0.293  Sum_probs=39.7

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|++++..+...          ...|.|.++..+|.|.|+|.|.|..|. ....+.|.|
T Consensus        32 v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~-~~~~~~L~v   90 (90)
T cd04972          32 VEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQ-ANVSVQVTV   90 (90)
T ss_pred             EEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCc-eeEEEEEeC
Confidence            7899999866321          257999999999999999999999998 567766654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.92  E-value=5.5e-09  Score=60.21  Aligned_cols=50  Identities=22%  Similarity=0.484  Sum_probs=37.4

Q ss_pred             eEEEE-CCEEeee--------c---CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFF-SKIELLY--------N---RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~-~~~~~~~--------~---~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++ ++..+..        .   .+.|+|.+++.+|+|.|+|.|.|..|...++++.|.|
T Consensus        31 i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          31 ISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI   92 (92)
T ss_pred             EEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence            78998 4444322        1   1479999999999999999999998665566666653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.92  E-value=5.2e-09  Score=60.04  Aligned_cols=35  Identities=37%  Similarity=0.586  Sum_probs=31.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ..|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~sa~L~V   89 (90)
T cd04974          55 EVLYLRNVSFDDAGEYTCLAGNSIGP-SHHSAWLTV   89 (90)
T ss_pred             ceEEEeccccccCcEEEEEeecccCc-ccCCEEEEe
Confidence            47899999999999999999999998 577888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.92  E-value=7e-09  Score=59.99  Aligned_cols=48  Identities=25%  Similarity=0.355  Sum_probs=37.8

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccC-CCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      ++|+|++.++..        .++.|.|.++. .+|+|.|+|.|.|..|...+..+.|
T Consensus        36 i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          36 YRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             EEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            789999987642        24678898875 6899999999999999865555544

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.91  E-value=6.7e-09  Score=59.28  Aligned_cols=49  Identities=31%  Similarity=0.440  Sum_probs=40.6

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+...          ...|.|.++..+|+|.|+|.+.|..|. ....+.|.|
T Consensus        32 v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~-~~~~~~l~V   90 (90)
T PF07679_consen   32 VTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGE-ATASVNLTV   90 (90)
T ss_dssp             EEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             ccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCE-EEEEEEEEC
Confidence            7899999887642          378999999999999999999999776 466666654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.91  E-value=4.1e-09  Score=59.57  Aligned_cols=50  Identities=18%  Similarity=0.281  Sum_probs=41.7

Q ss_pred             eEEEECCEEeeec--CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+...  ...|.|.+++.+|+|.|+|.+.+..+...|..+.|+|
T Consensus        32 ~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          32 VTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             EEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            7899999877443  5789999999999999999999998776677777664

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.90  E-value=8.9e-09  Score=56.76  Aligned_cols=49  Identities=24%  Similarity=0.352  Sum_probs=37.8

Q ss_pred             eEEEEC-CEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFS-KIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~-~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+++ +..+..       ..+.|.|.++..+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        18 v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v   74 (74)
T cd05764          18 IHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGE-ATATVELHI   74 (74)
T ss_pred             EEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCe-EEEEEEEEC
Confidence            789974 443321       3478999999999999999999999988 466666654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.90  E-value=2.1e-08  Score=58.37  Aligned_cols=68  Identities=15%  Similarity=0.168  Sum_probs=52.2

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcC----eee-----------------ecceEEEEecCCCCceeE-
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEG----TRF-----------------DEGTVTAKVLQPFSERTL-  111 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~----~~~-----------------~~~~l~i~~~~~~d~g~y-  111 (139)
                      +|.+.. +....+.+|+++.|.|.+.+.|.|.+.|..    ..+                 ....|.|..+..+|.|.| 
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            355543 345677889999999999999999998822    111                 124789999999999999 


Q ss_pred             -EEEcccCCCCC
Q psy12134        112 -SVQDKIGPGPD  122 (139)
Q Consensus       112 -~~~n~~g~~~~  122 (139)
                       .|.|.+|....
T Consensus        81 C~A~N~~G~~~~   92 (98)
T cd05870          81 CEAASRIGGHQK   92 (98)
T ss_pred             EEEeccCCccee
Confidence             88999998664

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.89  E-value=7.9e-09  Score=59.71  Aligned_cols=40  Identities=20%  Similarity=0.217  Sum_probs=34.0

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      ++|||++.++..         ....|.|.++..+|+|.|+|.+.+..+.
T Consensus        32 v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897          32 LQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             EEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            789999988752         2368999999999999999999998654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.88  E-value=9.5e-09  Score=59.48  Aligned_cols=49  Identities=31%  Similarity=0.384  Sum_probs=38.6

Q ss_pred             eEEEECCEEeee---------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY---------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+..               ..+.|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        33 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~s~~l~v   96 (96)
T cd05732          33 ITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG-DQQSMYLEV   96 (96)
T ss_pred             EEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC-cEEEEEEeC
Confidence            789998754321               1257999999999999999999999998 477776654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.88  E-value=1.1e-08  Score=56.93  Aligned_cols=48  Identities=23%  Similarity=0.362  Sum_probs=36.3

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCC----CCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTL----KLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~----~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      ++|+|++.++..          ..+.|.|..+..    .|.|.|+|.|.|..|...+..+.|
T Consensus        15 i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874          15 FSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             EEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            789999887521          247888877764    378999999999999865555554

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.88  E-value=1.6e-08  Score=56.53  Aligned_cols=37  Identities=32%  Similarity=0.552  Sum_probs=32.2

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      .+.|.|.++..+|+|.|.|.|.|..|...+..+.|.|
T Consensus        43 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734          43 NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            4789999999999999999999999987677777654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.87  E-value=6.1e-09  Score=58.11  Aligned_cols=41  Identities=20%  Similarity=0.151  Sum_probs=34.1

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCc
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGES   42 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~   42 (139)
                      +.|++++..+...          ...|.|.+++.+|+|.|+|.+.|..|..
T Consensus        18 v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   68 (78)
T cd05743          18 INWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV   68 (78)
T ss_pred             EEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence            7899988765321          2579999999999999999999999874

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.87  E-value=1.3e-08  Score=58.60  Aligned_cols=47  Identities=13%  Similarity=0.336  Sum_probs=37.8

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      +.|+|++..+...          .+.|.|.++..+|+|.|+|.+.|..|. .+..+.|
T Consensus        35 v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l   91 (92)
T cd05747          35 VTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGK-QEAQFTL   91 (92)
T ss_pred             EEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCC-EeEEEEe
Confidence            7899998765321          258999999999999999999999988 4555554

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.87  E-value=6.6e-09  Score=59.58  Aligned_cols=35  Identities=40%  Similarity=0.581  Sum_probs=31.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~V   89 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGI-SHHSAWLTV   89 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCc-ccceEEEEE
Confidence            47999999999999999999999998 477777776

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.87  E-value=1.6e-08  Score=58.01  Aligned_cols=62  Identities=15%  Similarity=0.097  Sum_probs=49.3

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +....+..|+.+.|.|.+.|.|.|.++|  ++...            ....|.|..+..+|.|.|  .|.|.+|+...
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~   84 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV   84 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence            3344578899999999999999999998  33221            123689999999999999  88999998654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.87  E-value=1.1e-08  Score=58.98  Aligned_cols=49  Identities=22%  Similarity=0.339  Sum_probs=38.1

Q ss_pred             eEEEECCEEeeec--------C---CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN--------R---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+...        .   ..|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus        33 i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~v~~   92 (92)
T cd05891          33 VIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGG-ETVDVTVSV   92 (92)
T ss_pred             EEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCc-eeeEEEEEC
Confidence            6899998765321        1   37999999999999999999999988 455555543

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.86  E-value=3.2e-08  Score=58.77  Aligned_cols=81  Identities=14%  Similarity=0.243  Sum_probs=54.0

Q ss_pred             ecCCeEEecCceEee----CCCCeEEEEEEeeeCCCcEEEE--cCeeee-----------------cceEEEEecC-CCC
Q psy12134         52 IYPPEVSVEKQWIHT----APDMRAEIICNVYANPPAKRFD--EGTRFD-----------------EGTVTAKVLQ-PFS  107 (139)
Q Consensus        52 ~~~p~~~~~~~~~~~----~~g~~~~l~C~~~~~p~~~~~~--~~~~~~-----------------~~~l~i~~~~-~~d  107 (139)
                      .++|.+...+....+    ..|..+.|.|.+.|.|++.++|  ++..+.                 ...|.|..+. .+|
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            456666544432111    3568999999999999999988  333211                 2357888887 589


Q ss_pred             ceeE--EEEcccCCCCCCCCcceeeeeCCC
Q psy12134        108 ERTL--SVQDKIGPGPDSNLRPSAYMADAP  135 (139)
Q Consensus       108 ~g~y--~~~n~~g~~~~~~~~~~~~~~~~~  135 (139)
                      .|.|  .|.|.+|...   .+..+.+.+.|
T Consensus        82 ~G~Y~C~A~N~~G~~~---~~i~L~~~~~p  108 (109)
T cd05773          82 YALFTCTAHNSLGEDS---LDIQLVSTSRP  108 (109)
T ss_pred             CEEEEEEEEeCCccCc---EEEEEEecCCC
Confidence            9999  8999999863   34444444444

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.86  E-value=1.7e-08  Score=56.55  Aligned_cols=35  Identities=34%  Similarity=0.443  Sum_probs=30.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ..|.|.+++.+|+|.|.|.+.|..|. ....+.|.|
T Consensus        47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v   81 (81)
T cd05765          47 GQLVIYNAQPQDAGLYTCTARNSGGL-LRANFPLSV   81 (81)
T ss_pred             cEEEEccCCcccCEEEEEEEecCCce-EEEEEEEeC
Confidence            57999999999999999999999998 577777764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.86  E-value=1.5e-08  Score=56.43  Aligned_cols=48  Identities=23%  Similarity=0.288  Sum_probs=36.0

Q ss_pred             eEEEECCEEee----------ecCCeEEEcccC----CCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          2 LVIFFSKIELL----------YNRESLDLDRVT----LKLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         2 ~~W~~~~~~~~----------~~~~~L~i~~v~----~~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      ++|+|++.++.          ..++.|.|..+.    .+|+|.|+|.|.|..|...+..+.|
T Consensus        15 v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875          15 FQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             EEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            78999987542          124788888764    2469999999999999866665554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.85  E-value=9.4e-09  Score=56.67  Aligned_cols=55  Identities=18%  Similarity=0.228  Sum_probs=45.6

Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      |+.+.|.|.+.+.|.|.+.|  ++..         ...+.|.|.++..+|.|.|  .|.|.+|+...+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   68 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANST   68 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEE
Confidence            67899999999999999988  2221         2446899999999999999  899999987753

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.85  E-value=1.1e-08  Score=56.42  Aligned_cols=41  Identities=24%  Similarity=0.453  Sum_probs=34.4

Q ss_pred             eEEEECCEEeeec-------------CCeEEEcccCCCCCEEEEEEEEcCCCCc
Q psy12134          2 LVIFFSKIELLYN-------------RESLDLDRVTLKLAGLYQCIASNNIGES   42 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~   42 (139)
                      +.|+|++.++...             ...|.|.++..+|+|.|+|.+.|..|..
T Consensus        16 ~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   69 (75)
T cd05750          16 FKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND   69 (75)
T ss_pred             EEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence            7899998776421             2579999999999999999999999873

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.84  E-value=1.7e-08  Score=58.42  Aligned_cols=50  Identities=26%  Similarity=0.328  Sum_probs=39.0

Q ss_pred             eEEEECCEEeeec---------CCeEEEccc-----CCCCCEEEEEEEEcC-CCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN---------RESLDLDRV-----TLKLAGLYQCIASNN-IGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~~~L~i~~v-----~~~d~G~Y~C~~~n~-~~~~~s~~~~l~v   51 (139)
                      +.|+|+|..+...         ++.|.|.++     +..|+|.|+|.+.|. .|...+..+.|.|
T Consensus        31 i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          31 IEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence            7899999876422         355777666     588999999999999 8887677777664

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.83  E-value=6.9e-08  Score=55.80  Aligned_cols=68  Identities=16%  Similarity=0.193  Sum_probs=48.1

Q ss_pred             CeEEecCceEeeCC---CCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecC-CCCceeE--EEEcc
Q psy12134         55 PEVSVEKQWIHTAP---DMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQ-PFSERTL--SVQDK  116 (139)
Q Consensus        55 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~-~~d~g~y--~~~n~  116 (139)
                      |.+...++...+.+   |+++.|.|.+.+.|.+.+.|  ++..+          ..+.|.|..+. ..|.|.|  .|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR   81 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcC
Confidence            44444454444433   46899999999999999988  44332          24567777654 6999999  89999


Q ss_pred             cCCCCC
Q psy12134        117 IGPGPD  122 (139)
Q Consensus       117 ~g~~~~  122 (139)
                      +|+..+
T Consensus        82 ~G~~~s   87 (94)
T cd05850          82 CGTVVS   87 (94)
T ss_pred             cCcEEE
Confidence            997653

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.83  E-value=6e-08  Score=56.23  Aligned_cols=70  Identities=13%  Similarity=0.168  Sum_probs=50.5

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEe-----cCCCCceeE-
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKV-----LQPFSERTL-  111 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~-----~~~~d~g~y-  111 (139)
                      +|.+...+....+.+|+++.|.|.+.+.|.|.+.|  ++..+              ..+.+.+..     +..+|.|.| 
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            46676667777888999999999999999999988  33321              122222222     268899999 


Q ss_pred             -EEEcccCCCCCC
Q psy12134        112 -SVQDKIGPGPDS  123 (139)
Q Consensus       112 -~~~n~~g~~~~~  123 (139)
                       .|.|.+|.....
T Consensus        81 C~a~N~~G~~~s~   93 (100)
T cd07693          81 CVAHNSLGEAVSR   93 (100)
T ss_pred             EEEEccccceecc
Confidence             889999985443

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.83  E-value=3.5e-08  Score=57.35  Aligned_cols=69  Identities=12%  Similarity=0.184  Sum_probs=50.5

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------------ecceEEEEecCCCCceeE--E
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------------DEGTVTAKVLQPFSERTL--S  112 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------------~~~~l~i~~~~~~d~g~y--~  112 (139)
                      .|.+...+....+..|+.+.|.|.+.|.|.|.+.|  ++...                 ....|.|..+..+|.|.|  .
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            35554444444445689999999999999999988  22110                 113688999999999999  7


Q ss_pred             EEcccCCCCC
Q psy12134        113 VQDKIGPGPD  122 (139)
Q Consensus       113 ~~n~~g~~~~  122 (139)
                      |.|.+|....
T Consensus        82 A~N~~G~~~~   91 (97)
T cd05869          82 ASNTIGQDSQ   91 (97)
T ss_pred             EecCCCCeeE
Confidence            8999998754

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.82  E-value=1.7e-08  Score=58.72  Aligned_cols=35  Identities=31%  Similarity=0.600  Sum_probs=30.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        64 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~~   98 (98)
T cd05870          64 SSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDI   98 (98)
T ss_pred             eEEEEeeCCcCCCEEEEEEEeccCCc-ceeEEEEeC
Confidence            57999999999999999999999998 466776654

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.80  E-value=2.7e-08  Score=57.69  Aligned_cols=50  Identities=28%  Similarity=0.359  Sum_probs=36.4

Q ss_pred             eEEEECCEEeee------------cCCeEEE-----cccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY------------NRESLDL-----DRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~------------~~~~L~i-----~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+..            ..+.+.+     ..++.+|+|.|+|.+.|..|...+..+.|.|
T Consensus        33 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          33 IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence            789999987654            1122222     2236899999999999999987677777766

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.80  E-value=7.3e-08  Score=55.70  Aligned_cols=68  Identities=15%  Similarity=0.114  Sum_probs=48.5

Q ss_pred             CeEEecCceEeeC---CCCeEEEEEEeeeCCCcEEEE--cCee----------eecceEEEEecC-CCCceeE--EEEcc
Q psy12134         55 PEVSVEKQWIHTA---PDMRAEIICNVYANPPAKRFD--EGTR----------FDEGTVTAKVLQ-PFSERTL--SVQDK  116 (139)
Q Consensus        55 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~~~~--~~~~----------~~~~~l~i~~~~-~~d~g~y--~~~n~  116 (139)
                      |.+...+....+.   .|+.+.|.|.+.|.|.|.+.|  ++..          ...+.|.|..+. .+|.|.|  .|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS   81 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence            3444444443332   478999999999999999988  3332          134567787774 6999999  89999


Q ss_pred             cCCCCC
Q psy12134        117 IGPGPD  122 (139)
Q Consensus       117 ~g~~~~  122 (139)
                      +|+..+
T Consensus        82 ~G~~~S   87 (94)
T cd05848          82 IGSILS   87 (94)
T ss_pred             CCeEEe
Confidence            997654

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.79  E-value=3.4e-08  Score=53.83  Aligned_cols=45  Identities=22%  Similarity=0.313  Sum_probs=34.5

Q ss_pred             eEEEECCEEeeec------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          2 LVIFFSKIELLYN------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         2 ~~W~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      +.|+|++.++...      ...|.|.+++  |+|.|+|.|.|..|. ....+.|
T Consensus        18 v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~-~~~~a~l   68 (69)
T cd05739          18 VKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGM-IEATAQV   68 (69)
T ss_pred             EEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCE-EEEEEEE
Confidence            7899999876432      3568888874  799999999999987 4555544

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.79  E-value=2.2e-08  Score=57.85  Aligned_cols=58  Identities=14%  Similarity=0.192  Sum_probs=47.0

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+..|+++.|.|.+.|.|.|.+.|  ++..+           ....|.|..+..+|.|.|  .|.|.+|...
T Consensus        13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   85 (95)
T cd05730          13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQE   85 (95)
T ss_pred             eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence            3567899999999999999999988  33221           224699999999999999  8899998754

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.79  E-value=6.1e-08  Score=55.77  Aligned_cols=62  Identities=13%  Similarity=0.200  Sum_probs=49.0

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------e---cceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------D---EGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~---~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +....+.+|+++.|.|.+.+.|.|.+.|  ++..+          .   ...|.|.++..+|.|.|  .|.|.+|....
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            3345677899999999999999999988  33221          1   12689999999999999  89999997654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.78  E-value=3.3e-08  Score=56.85  Aligned_cols=61  Identities=8%  Similarity=0.088  Sum_probs=48.6

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      .....+.+|+++.|.|.+.+. .|.+.|  ++..+         ....|.|..+..+|.|.|  .|.|.+|...+
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            344577889999999999999 888888  33321         235799999999999999  88999987654

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.78  E-value=6.5e-08  Score=55.01  Aligned_cols=59  Identities=12%  Similarity=0.107  Sum_probs=47.8

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ...+..|+.+.|.|.+.|.|+|.+.|  ++..+             ....|.|..+..+|.|.|  .|.|.+|...
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~   79 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDH   79 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence            34567899999999999999999998  22221             124799999999999999  8999999865

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.78  E-value=2.5e-08  Score=56.56  Aligned_cols=61  Identities=13%  Similarity=0.064  Sum_probs=50.2

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +....+..|+.+.|.|.+.+.|.|.+.|  ++..        ...+.|.|..+..+|.|.|  .|.|.+|...
T Consensus         6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05728           6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIY   78 (85)
T ss_pred             CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence            4456778899999999999999999988  3332        2456899999999999999  8899988754

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.77  E-value=5.1e-08  Score=56.28  Aligned_cols=70  Identities=11%  Similarity=0.020  Sum_probs=49.5

Q ss_pred             CeEEecCceEeeCC---CCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecC-CCCceeE--EEEccc
Q psy12134         55 PEVSVEKQWIHTAP---DMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQ-PFSERTL--SVQDKI  117 (139)
Q Consensus        55 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~-~~d~g~y--~~~n~~  117 (139)
                      |.+...+....+.+   +..+.|.|.+.|.|.|.+.|  ++..         ..++.|.|..+. .+|.|.|  .|.|.+
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~   81 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIY   81 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCc
Confidence            44444444433333   45799999999999999988  3322         234678888874 6899999  899999


Q ss_pred             CCCCCCC
Q psy12134        118 GPGPDSN  124 (139)
Q Consensus       118 g~~~~~~  124 (139)
                      |...+..
T Consensus        82 G~~~s~~   88 (93)
T cd05849          82 GKVRSRE   88 (93)
T ss_pred             ceEEEcc
Confidence            9876544

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.77  E-value=4.1e-08  Score=54.43  Aligned_cols=53  Identities=17%  Similarity=0.218  Sum_probs=44.0

Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      |+.+.|.|.+.+.|.|.+.|  ++..           ...+.|.|..+..+|.|.|  .|.|.+|...
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   68 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLL   68 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEE
Confidence            68899999999999999988  4432           1346899999999999999  8899988754

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.77  E-value=2e-08  Score=54.40  Aligned_cols=50  Identities=16%  Similarity=0.124  Sum_probs=41.6

Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.|.|.+.|.|+|.+.|  ++..+    ..+.|.|.++..+|.|.|  .|.|.+|...
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~   58 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLE   58 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEE
Confidence            46899999999999988  55544    345899999999999999  8899988643

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.77  E-value=2.5e-08  Score=57.28  Aligned_cols=44  Identities=30%  Similarity=0.353  Sum_probs=35.0

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCC-CCCEEEEEEEEcCCCCceee
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTL-KLAGLYQCIASNNIGESTSK   45 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~-~d~G~Y~C~~~n~~~~~~s~   45 (139)
                      ++|+|++..+..        ..+.|.|.++.. +|+|.|+|.+.|..|...+.
T Consensus        36 i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~   88 (91)
T cd04967          36 YRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR   88 (91)
T ss_pred             EEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence            789999987632        236888988874 89999999999999875443

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.77  E-value=3.5e-08  Score=55.45  Aligned_cols=46  Identities=20%  Similarity=0.228  Sum_probs=36.4

Q ss_pred             eEEEECCEEeee----cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          2 LVIFFSKIELLY----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         2 ~~W~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      +.|+|++.++..    ..+.|.|.++  .|+|.|.|.|+|..|...+..++|
T Consensus        31 I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749          31 ILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             EEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence            789999988743    3578999887  478999999999999865555544

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.77  E-value=4.9e-08  Score=56.66  Aligned_cols=62  Identities=11%  Similarity=0.003  Sum_probs=46.6

Q ss_pred             cCceEeeCCCCeEEEEEEeeeCCC-cEEEEc---Ceee----------e----cceEEEEecCCCCceeE--EEEccc-C
Q psy12134         60 EKQWIHTAPDMRAEIICNVYANPP-AKRFDE---GTRF----------D----EGTVTAKVLQPFSERTL--SVQDKI-G  118 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~~p~-~~~~~~---~~~~----------~----~~~l~i~~~~~~d~g~y--~~~n~~-g  118 (139)
                      .+....+..|+++.|.|.+.+.|. |.+.|.   +..+          .    .+.|.|..+..+|.|.|  .|.|.+ |
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g   85 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG   85 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence            344456778999999999999994 688882   2211          0    14689999999999999  889986 5


Q ss_pred             CCC
Q psy12134        119 PGP  121 (139)
Q Consensus       119 ~~~  121 (139)
                      ...
T Consensus        86 ~~~   88 (96)
T cd05865          86 ESE   88 (96)
T ss_pred             cEE
Confidence            544

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.77  E-value=6.7e-08  Score=54.68  Aligned_cols=63  Identities=16%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             CceEeeCCCCeEEEEEEe-eeCCCcEEEE--cCee----------eecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         61 KQWIHTAPDMRAEIICNV-YANPPAKRFD--EGTR----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~-~~~p~~~~~~--~~~~----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      +....+..|+++.|.|.+ .+.|.+.+.|  ++..          ...+.|.|..+..+|.|.|  .+.|.+|.....
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   80 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA   80 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence            344566789999999998 6888888888  3322          1246899999999999999  889998876544

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.76  E-value=2.7e-08  Score=56.26  Aligned_cols=35  Identities=31%  Similarity=0.491  Sum_probs=30.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|.|.+++.+|+|.|+|.+.|..+. .+++..|.|
T Consensus        49 s~L~I~~v~~~DsG~Y~C~a~n~~~~-~~~s~~v~v   83 (84)
T cd05742          49 STLTIPNATLKDSGTYTCAASSGTMD-QKESTKVNI   83 (84)
T ss_pred             EEEEECCCChhhCEEEEEEEccCCCc-eEEEEEEEE
Confidence            67999999999999999999999887 466666655

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.76  E-value=4.1e-08  Score=57.53  Aligned_cols=59  Identities=12%  Similarity=0.081  Sum_probs=47.3

Q ss_pred             eEeeCCCCeEEEEEEeee-CCCcEEEE--cCeee----------e-------cceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         63 WIHTAPDMRAEIICNVYA-NPPAKRFD--EGTRF----------D-------EGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~-~p~~~~~~--~~~~~----------~-------~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      ...+..|+++.|.|.+.| .|+|.+.|  ++..+          .       ...|.|..+..+|.|.|  .|.|..|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            456678999999999999 88888888  33321          1       25689999999999999  899999865


Q ss_pred             C
Q psy12134        121 P  121 (139)
Q Consensus       121 ~  121 (139)
                      .
T Consensus        92 ~   92 (101)
T cd04975          92 S   92 (101)
T ss_pred             E
Confidence            4

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.75  E-value=3.8e-08  Score=56.25  Aligned_cols=51  Identities=24%  Similarity=0.324  Sum_probs=39.5

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++..+..          ....|.|.+++.+|+|.|.|.+.+..+.....++.|.|.
T Consensus        27 i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~   87 (89)
T cd04979          27 VVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL   87 (89)
T ss_pred             EEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence            789999865432          235699999999999999999998765546777777765

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.75  E-value=5e-08  Score=54.84  Aligned_cols=61  Identities=10%  Similarity=0.188  Sum_probs=46.5

Q ss_pred             cCceEeeCCCCeEEEEEEeeeCCCc-EEEE--cCeee------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         60 EKQWIHTAPDMRAEIICNVYANPPA-KRFD--EGTRF------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~--~~~~~------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      .++...+..|+++.|.|.+.|.|.| .+.|  ++..+      ..+.|.+..+  .|.|.|  .|.|.+|....
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            3456778899999999999999999 6888  44432      2346777766  478999  89999996553

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.75  E-value=5.5e-08  Score=56.25  Aligned_cols=68  Identities=13%  Similarity=0.177  Sum_probs=50.6

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------------ecceEEEEecCCCCceeE--E
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------------DEGTVTAKVLQPFSERTL--S  112 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------------~~~~l~i~~~~~~d~g~y--~  112 (139)
                      +|.+.. .....+.+|+.+.|.|.+.+.|.|.+.|  ++...                 ....|.|..+..+|.|.|  .
T Consensus         2 ~P~i~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKITY-LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Ccccee-cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            344543 2335667899999999999999999988  22110                 123789999999999999  8


Q ss_pred             EEcccCCCCC
Q psy12134        113 VQDKIGPGPD  122 (139)
Q Consensus       113 ~~n~~g~~~~  122 (139)
                      |.|.+|....
T Consensus        81 a~N~~G~~~~   90 (96)
T cd05732          81 ASNRIGGDQQ   90 (96)
T ss_pred             EEeCCCCcEE
Confidence            8999998653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.73  E-value=8e-08  Score=55.31  Aligned_cols=62  Identities=13%  Similarity=0.099  Sum_probs=47.7

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCCCcEEEEc---Ceee---------ecc---eEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANPPAKRFDE---GTRF---------DEG---TVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~---~~~~---------~~~---~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+....+..|+++.|.|.+.|.|. .+.|.   +...         ..+   .|.|..+..+|.|.|  .|.|..|...
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   83 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ   83 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence            3344566788999999999999998 67772   3221         122   799999999999999  8899988765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.73  E-value=9.7e-08  Score=53.28  Aligned_cols=60  Identities=13%  Similarity=0.248  Sum_probs=46.7

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCC-cEEEE--cCeee--ecceEEEEecCCCCceeEEEEc
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPP-AKRFD--EGTRF--DEGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~~--~~~~~--~~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      |.+...+....+.+|++++|.|.+.+.|. ..+.|  ++..+  ..+.|.|..+ .+|.|.|.|+.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~~~~l~i~~~-~~dsG~Y~C~a   65 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETTTNSYRIRAA-NNDSGEYRCQT   65 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeeccCCeEEEeec-ccCCEEeEEEC
Confidence            45666677778889999999999999875 45667  56553  5568999999 99999995543

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.72  E-value=4.4e-08  Score=53.88  Aligned_cols=54  Identities=13%  Similarity=0.096  Sum_probs=44.7

Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      |+++.|.|.+.+.|.+.+.|  ++..         ...+.|.|.++..+|.|.|  .+.|.+|+...
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   67 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANS   67 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEE
Confidence            67899999999999999988  3222         1346799999999999999  89999998764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.71  E-value=1e-07  Score=54.28  Aligned_cols=67  Identities=16%  Similarity=0.238  Sum_probs=52.9

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      |.|...+....+..|+++.|.|.+.+.|.+.+.|  ++..+            ....|.|.++..+|.|.|  .+.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            4566666778889999999999999999999888  43331            234799999999999999  7788766


Q ss_pred             CCC
Q psy12134        119 PGP  121 (139)
Q Consensus       119 ~~~  121 (139)
                      ...
T Consensus        81 ~~~   83 (90)
T PF07679_consen   81 EAT   83 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.71  E-value=3.8e-08  Score=56.36  Aligned_cols=54  Identities=19%  Similarity=0.206  Sum_probs=43.7

Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCee-----------------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTR-----------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~-----------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      |+.+.|.|.+.+.|.|.++|  ++..                 ...+.|.|.++..+|.|.|  .+.|.+|+...
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   75 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILT   75 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence            68899999999999999988  2211                 1245799999999999999  88999887654

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.71  E-value=5.4e-08  Score=53.28  Aligned_cols=52  Identities=15%  Similarity=0.140  Sum_probs=42.0

Q ss_pred             eEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         71 RAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        71 ~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      ++.|.|.+.|.|.|.+.|  ++..         ...+.|.+..+..+|.|.|  .|.|.+|+...
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~   65 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQA   65 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEE
Confidence            478999999999999988  3322         2345688889999999999  89999998664

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.69  E-value=4.5e-08  Score=54.32  Aligned_cols=54  Identities=19%  Similarity=0.203  Sum_probs=44.1

Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      |+++.|.|.+.|.|+|.+.|  ++..+           ..+.|.+..+...|.|.|  .|.|.+|....
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~   69 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLA   69 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEE
Confidence            67899999999999999988  43331           234788889999999999  88999987654

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.68  E-value=1e-07  Score=53.87  Aligned_cols=59  Identities=14%  Similarity=0.201  Sum_probs=46.9

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      ..+..|+.+.|.|.+.+.|++.+.|  ++..+             ....|.|..+..+|.|.|  .+.|.+|+...
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH   79 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence            4567899999999999999999988  43321             123578888999999999  88999998654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.67  E-value=9.9e-08  Score=54.67  Aligned_cols=55  Identities=15%  Similarity=0.212  Sum_probs=43.9

Q ss_pred             CCeEEEEEEeeeCCCcEEEEcC------ee-----------e----------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         69 DMRAEIICNVYANPPAKRFDEG------TR-----------F----------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~~~------~~-----------~----------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |+.+.|.|.+.+.|.|.+.|-+      ..           .          ....|.|.++..+|+|.|  .|.|.+|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            6789999999999999998822      11           0          123688999999999999  89999998


Q ss_pred             CCCC
Q psy12134        120 GPDS  123 (139)
Q Consensus       120 ~~~~  123 (139)
                      ...+
T Consensus        81 ~~~s   84 (90)
T cd04974          81 SHHS   84 (90)
T ss_pred             ccCC
Confidence            7654

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.67  E-value=5.8e-08  Score=56.89  Aligned_cols=60  Identities=10%  Similarity=-0.037  Sum_probs=48.0

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEE--cCeeee------------------cceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTRFD------------------EGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~------------------~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      ...+..|+.+.|.|.+.|.|+|.+.|  ++..+.                  ...|.|.++..+|.|.|  .|.|..|+.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            34556789999999999999999988  333311                  24699999999999999  899998876


Q ss_pred             CC
Q psy12134        121 PD  122 (139)
Q Consensus       121 ~~  122 (139)
                      ..
T Consensus        92 ~~   93 (101)
T cd05859          92 SY   93 (101)
T ss_pred             EE
Confidence            53

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.67  E-value=2e-07  Score=54.26  Aligned_cols=68  Identities=15%  Similarity=0.304  Sum_probs=49.0

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCc-EEEE--cCeeee------------------cceEEEEecCCCC-ceeE
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KRFD--EGTRFD------------------EGTVTAKVLQPFS-ERTL  111 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~--~~~~~~------------------~~~l~i~~~~~~d-~g~y  111 (139)
                      +|.+.. .....+..|+.+.|.|.+.+.|.| .+.|  ++..+.                  ...|.|..+..+| .|.|
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            454533 344567889999999999999988 5777  332210                  0268888898844 8999


Q ss_pred             --EEEcccCCCCC
Q psy12134        112 --SVQDKIGPGPD  122 (139)
Q Consensus       112 --~~~n~~g~~~~  122 (139)
                        .|.|.+|....
T Consensus        81 ~C~A~N~~G~~~~   93 (98)
T cd05758          81 NCTAWNSFGSGTA   93 (98)
T ss_pred             EEEEEcCCCcccE
Confidence              88999998664

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.67  E-value=7e-08  Score=53.33  Aligned_cols=54  Identities=17%  Similarity=0.161  Sum_probs=44.4

Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      |+.+.|.|.+.+.|.|.+.|  ++..           .....|.|..+..+|.|.|  .|.|..|....
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~   69 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLA   69 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence            68899999999999999988  3322           2346899999999999999  78999888653

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.66  E-value=2.7e-07  Score=52.68  Aligned_cols=64  Identities=11%  Similarity=0.063  Sum_probs=47.3

Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee---------e--------cceEEEEecCCCCceeE--EEEcccCCCCCCCCcc
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF---------D--------EGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLRP  127 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~---------~--------~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~  127 (139)
                      |+.+.|.|.+.+.|++.+.|  ++..+         .        ...|.|..+..+|.|.|  .|.|.+|....   ..
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~---~~   77 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRG---II   77 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceE---EE
Confidence            68899999999999999999  22211         0        13588888899999999  89999998663   34


Q ss_pred             eeeeeCCC
Q psy12134        128 SAYMADAP  135 (139)
Q Consensus       128 ~~~~~~~~  135 (139)
                      .+.+.+.|
T Consensus        78 ~L~V~~~P   85 (88)
T cd05735          78 QLTVQEPP   85 (88)
T ss_pred             EEEEeCCC
Confidence            44554444

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.65  E-value=4.1e-08  Score=54.39  Aligned_cols=52  Identities=13%  Similarity=0.150  Sum_probs=40.9

Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee----------ecc----eEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF----------DEG----TVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~----------~~~----~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      +.|.|.+.|.|.|.+.|  ++..+          ..+    .|.|..+..+|.|.|  .|.|.+|+...+
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCT   70 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            47899999999999999  22221          111    588999999999999  899999987643

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.64  E-value=6.5e-08  Score=53.57  Aligned_cols=51  Identities=22%  Similarity=0.284  Sum_probs=40.6

Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee----------e--cc--eEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF----------D--EG--TVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~----------~--~~--~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.|.|.+.|.|.|.+.|  ++..+          .  .+  .|.|.++..+|.|.|  .|.|.+|....
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~   69 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATC   69 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEE
Confidence            47899999999999999  33221          1  11  699999999999999  89999997764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.64  E-value=1.9e-07  Score=52.87  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=31.2

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEe
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI   52 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~   52 (139)
                      .+.|.|.+++.+|+|.|.|.+.|..+ ...+.++.|+|+
T Consensus        45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~   83 (84)
T cd05861          45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH   83 (84)
T ss_pred             EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence            36799999999999999999998764 235777777775

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.63  E-value=2e-07  Score=51.71  Aligned_cols=50  Identities=26%  Similarity=0.319  Sum_probs=40.6

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+......+.+..++.+|+|.|+|.+.+..+...+..+.|.|
T Consensus        31 ~~w~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   31 VQWYKNGSPINSSQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EEEEETTEEEEEESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeeeeeeeeeeeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            68999998887665558889999999999999999976554667776665

...

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.63  E-value=1.8e-07  Score=52.56  Aligned_cols=49  Identities=22%  Similarity=0.357  Sum_probs=38.4

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+...           ...|.|.++..+|+|.|.|.+.|..|. .+.++.|.|
T Consensus        26 v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~-~~~~~~l~v   85 (85)
T cd05729          26 ITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS-INHTYKVDV   85 (85)
T ss_pred             EEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCce-EEEEEEEeC
Confidence            7899998765321           146889999999999999999999887 466666653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.62  E-value=5.7e-08  Score=52.84  Aligned_cols=51  Identities=16%  Similarity=0.247  Sum_probs=41.6

Q ss_pred             EEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.|.|.+.+.|.|.+.|  ++..         ...+.|.|..+..+|.|.|  .|.|.+|....
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   64 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASV   64 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEE
Confidence            46899999999999988  3322         1346799999999999999  88999998764

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.62  E-value=1.2e-07  Score=53.73  Aligned_cols=47  Identities=26%  Similarity=0.205  Sum_probs=37.2

Q ss_pred             eEEEECCEEeee----cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          2 LVIFFSKIELLY----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         2 ~~W~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      +.|++++..+..    ..+.|.|.+++.+|+|.|.|.+.|..|. .+..+.|
T Consensus        34 i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~-~~~~~~l   84 (85)
T cd05754          34 LVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDT-DEATATL   84 (85)
T ss_pred             EEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCe-EeEEEEE
Confidence            789998865422    2578999999999999999999999887 3555443

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.61  E-value=1.7e-07  Score=49.17  Aligned_cols=39  Identities=26%  Similarity=0.439  Sum_probs=32.7

Q ss_pred             eEEEECCEEee------ecCCeEEEcccCCCCCEEEEEEEEcCCC
Q psy12134          2 LVIFFSKIELL------YNRESLDLDRVTLKLAGLYQCIASNNIG   40 (139)
Q Consensus         2 ~~W~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~   40 (139)
                      +.|++++..+.      .....|.|.+++..|+|.|+|.+.|..|
T Consensus        19 v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       19 ITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             EEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            68999887755      2357899999999999999999998754

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.61  E-value=1.7e-07  Score=53.25  Aligned_cols=37  Identities=32%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      .+.|.|.+++..|+|.|+|.+.|..+. ......|.|+
T Consensus        49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~-~~~~t~~~V~   85 (86)
T cd05862          49 SSTLTIENVTLSDLGRYTCTASSGQMI-AKNSTIVIVH   85 (86)
T ss_pred             eeEEEEecCCcccCEEEEEEEeecceE-ecccEEEEEe
Confidence            368999999999999999999998776 4666666665

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.61  E-value=3.1e-07  Score=52.82  Aligned_cols=62  Identities=15%  Similarity=0.269  Sum_probs=48.2

Q ss_pred             ceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee----------eec---ceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         62 QWIHTAPDMRAEIICNVYANPPAKRFD--EGTR----------FDE---GTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~----------~~~---~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      ....+.+|+.+.|.|.+.+.|.|.+.|  ++..          ...   ..|.|..+..+|.|.|  .+.|.+|..+.+
T Consensus         9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence            345677899999999999999998888  2221          111   2688999999999999  889999887643

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.60  E-value=9.3e-07  Score=50.84  Aligned_cols=60  Identities=13%  Similarity=0.060  Sum_probs=45.4

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCCCcEEEEc---Ceee-------------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANPPAKRFDE---GTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~---~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      +.+....+..|+++.|.|.+.+.|+ .+.|.   +...             ....|.|..+..+|.|.|  .|.|..|.
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence            3444567788999999999999875 77882   2221             113699999999999999  78888765

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.60  E-value=2.2e-07  Score=54.02  Aligned_cols=47  Identities=19%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             eEEEECCEEeeec----------------CCeEEEcccCCC-CCEEEEEEEEcCCCCceeeeEEE
Q psy12134          2 LVIFFSKIELLYN----------------RESLDLDRVTLK-LAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------------~~~L~i~~v~~~-d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      +.|++++..+...                .+.|.|.++..+ |.|.|.|.|.|..|.. ...+.|
T Consensus        34 v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~-~~~~~L   97 (98)
T cd05758          34 IVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG-TAIISL   97 (98)
T ss_pred             eEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc-cEEEEe
Confidence            7899998766421                037999999984 4899999999999883 555444

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.59  E-value=9.6e-08  Score=52.17  Aligned_cols=51  Identities=14%  Similarity=0.126  Sum_probs=41.5

Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee-------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF-------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~-------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.|.|.+.|.|+|.+.|  ++..+       ....|.|..+..+|.|.|  .|.|.+|....
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~   62 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQ   62 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceee
Confidence            36899999999999988  44442       234799999999999999  89999987653

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.59  E-value=3.9e-07  Score=52.63  Aligned_cols=62  Identities=18%  Similarity=0.192  Sum_probs=45.9

Q ss_pred             cCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEec-----CCCCceeE--EEEcc-cC
Q psy12134         60 EKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVL-----QPFSERTL--SVQDK-IG  118 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~-----~~~d~g~y--~~~n~-~g  118 (139)
                      .+....+..|+++.|.|.+.+.|++.+.|  ++..+           ..+.+.+..+     ...|.|.|  .|.|. +|
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G   84 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLG   84 (95)
T ss_pred             CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccC
Confidence            34445667899999999999999999988  33321           2345666665     57899999  78888 88


Q ss_pred             CCC
Q psy12134        119 PGP  121 (139)
Q Consensus       119 ~~~  121 (139)
                      ...
T Consensus        85 ~~~   87 (95)
T cd05722          85 SIV   87 (95)
T ss_pred             cEE
Confidence            764

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.58  E-value=2.6e-07  Score=51.36  Aligned_cols=51  Identities=18%  Similarity=0.266  Sum_probs=40.8

Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.|.|.+.+.|.|.+.|  ++..+           ..+.|.|..+..+|.|.|  .+.|.+|....
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   66 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCS   66 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence            47899999999999988  33331           124799999999999999  89999997543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.57  E-value=2.8e-07  Score=51.51  Aligned_cols=51  Identities=16%  Similarity=0.154  Sum_probs=40.6

Q ss_pred             EEEEEeeeCCCcEEEE--cCeee-----------------ecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         73 EIICNVYANPPAKRFD--EGTRF-----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        73 ~l~C~~~~~p~~~~~~--~~~~~-----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      .+.|.+.|+|.|.+.|  ++..+                 ..+.|.|..+...|.|.|  .|.|.+|+...+
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~   73 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN   73 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence            4789999999999988  44332                 123688889999999999  899999987643

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.55  E-value=3e-07  Score=51.23  Aligned_cols=54  Identities=13%  Similarity=0.043  Sum_probs=43.1

Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      |+++.|.|.+.+.|.|.+.|  ++...            ....|.|.++..+|.|.|  .|.|.+|....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   70 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFG   70 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence            68899999999999999988  22211            124789999999999999  78899887653

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.53  E-value=5.5e-07  Score=49.52  Aligned_cols=53  Identities=17%  Similarity=0.287  Sum_probs=43.3

Q ss_pred             CCeEEEEEEeeeCCCcEEEEc---Cee---------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFDE---GTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~~---~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      |+.+.|.|.+.+.|.|.++|.   +..         ...+.|.|..+..+|.|.|  .|.|.+|...
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   67 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEAT   67 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEE
Confidence            678999999999999999882   222         1346799999999999999  8899988754

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.53  E-value=1.6e-06  Score=49.70  Aligned_cols=56  Identities=13%  Similarity=0.175  Sum_probs=42.8

Q ss_pred             CCCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecC-CCCceeE--EEEcccCCCCCC
Q psy12134         68 PDMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQ-PFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~-~~d~g~y--~~~n~~g~~~~~  123 (139)
                      .+.++.|.|.+.+.|++.+.|  ++..+          ..+.|.|..+. .+|.|.|  .|.|.+|+..+.
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~   88 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR   88 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence            356799999999999999988  33332          23578887776 5899999  889999976543

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.52  E-value=3.5e-07  Score=50.41  Aligned_cols=50  Identities=12%  Similarity=0.169  Sum_probs=39.7

Q ss_pred             EEEEEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.|.|.+.|.|.|.+.|  ++..           ...+.|.|..+..+|.|.|  .|.|.+|...
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~   65 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRY   65 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceE
Confidence            46899999999999988  3322           1245788999999999999  7888888754

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.52  E-value=2.7e-07  Score=50.47  Aligned_cols=50  Identities=16%  Similarity=0.116  Sum_probs=40.5

Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.|.|.+.|.|+|.+.|  ++..+        ....|.|.++..+|.|.|  .+.|.+|...
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~   62 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLE   62 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEE
Confidence            46899999999999988  44432        346899999999999999  7888887643

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.52  E-value=1.8e-07  Score=53.23  Aligned_cols=37  Identities=27%  Similarity=0.336  Sum_probs=31.6

Q ss_pred             eEEEECCEEeeec-------CCeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN-------RESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ++|+++|.++...       +..|.|.+++.+|+|.|+|.+.+.
T Consensus        27 i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873          27 VVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             EEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence            7899999887443       467999999999999999999865

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.52  E-value=4.2e-07  Score=52.03  Aligned_cols=55  Identities=13%  Similarity=0.177  Sum_probs=43.5

Q ss_pred             CCeEEEEEEeeeCCCcEEEEcC------eee-----------e----------cceEEEEecCCCCceeE--EEEcccCC
Q psy12134         69 DMRAEIICNVYANPPAKRFDEG------TRF-----------D----------EGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~~~------~~~-----------~----------~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |+++.|.|.+.+.|.|.+.|..      ...           .          ...|.|..+..+|+|.|  .|.|.+|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            6789999999999999998832      100           0          13699999999999999  88999997


Q ss_pred             CCCC
Q psy12134        120 GPDS  123 (139)
Q Consensus       120 ~~~~  123 (139)
                      ...+
T Consensus        81 ~~~~   84 (90)
T cd05858          81 SHHS   84 (90)
T ss_pred             ccce
Confidence            6544

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.51  E-value=5.5e-07  Score=50.31  Aligned_cols=57  Identities=16%  Similarity=0.186  Sum_probs=44.8

Q ss_pred             eeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         65 HTAPDMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .+..|+++.|.|.+.+.|.|.+.|  ++...          ....|.|..+..+|.|.|  .+.|..|...
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   75 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN   75 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEE
Confidence            345799999999999999998888  22221          124788999999999999  7888888643

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.51  E-value=3e-07  Score=50.89  Aligned_cols=51  Identities=16%  Similarity=0.147  Sum_probs=40.2

Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee----------ec----ceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF----------DE----GTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~----------~~----~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.|.|.+.|.|.|.++|  ++...          ..    ..|.|..+..+|.|.|  .|.|.+|+...
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   69 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSC   69 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEE
Confidence            46899999999999998  33221          11    1589999999999999  88999998654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.51  E-value=7.7e-07  Score=50.43  Aligned_cols=53  Identities=11%  Similarity=0.083  Sum_probs=40.7

Q ss_pred             CeEEEEEEeeeCCCc--EEEE--cCeee----------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         70 MRAEIICNVYANPPA--KRFD--EGTRF----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        70 ~~~~l~C~~~~~p~~--~~~~--~~~~~----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +++.|.|.+.+.|.|  .+.|  ++..+                ..+.|.|.+++..|.|.|  .|.|.+|..+.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~   75 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA   75 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence            468999999999977  4577  33221                235799999999999999  88999886654

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.50  E-value=9.5e-07  Score=50.73  Aligned_cols=38  Identities=26%  Similarity=0.433  Sum_probs=29.4

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEc-CCCCceeeeEEEEEec
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVIY   53 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n-~~~~~~s~~~~l~v~~   53 (139)
                      ...|.|.+++.+|+|.|+|.+.+ ..+. .-..++|.|..
T Consensus        52 ~~~L~I~~~~~~DsG~Y~C~a~~~~~~~-~~~~~~l~v~~   90 (91)
T cd05871          52 ERGLLLRSLQRSDAGVYTCTAVEHSFSQ-TLAKYTLHVIE   90 (91)
T ss_pred             cCeEEEeeCChhHCEEEEEEEEccCCeE-EEEEEEEEEec
Confidence            46799999999999999999984 5444 34577777653

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.50  E-value=1e-06  Score=49.15  Aligned_cols=58  Identities=12%  Similarity=0.104  Sum_probs=44.3

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ...+.+|+.+.|.|.+.+. ++.++|  ++..        .....|.|..+..+|.|.|  .+.|..|+..
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~   72 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDT   72 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCccc
Confidence            3466789999999999986 456777  3332        2345789999999999999  6778877644

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.50  E-value=3.5e-07  Score=50.33  Aligned_cols=52  Identities=8%  Similarity=0.137  Sum_probs=41.4

Q ss_pred             eEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         71 RAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        71 ~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      .+.|.|.+.|.|.|.+.|  ++..+            ....|.|.++..+|.|.|  .|.|.+|....
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   68 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSA   68 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEE
Confidence            368999999999999988  33221            124688999999999999  89999987654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.50  E-value=3e-07  Score=51.35  Aligned_cols=54  Identities=19%  Similarity=0.187  Sum_probs=43.1

Q ss_pred             CCeEEEEEEeeeCCCcEEEEcCe-----e--------------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFDEGT-----R--------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~~~~-----~--------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      |+++.|.|.+.+.|.|.+.|...     .              .....|.|..+..+|.|.|  .+.|.+|....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   75 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRA   75 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence            67899999999999999988321     0              0124789999999999999  88999997654

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.48  E-value=6.4e-07  Score=50.06  Aligned_cols=49  Identities=14%  Similarity=0.131  Sum_probs=37.0

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCc--eeeeEEEE
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVN   50 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~--~s~~~~l~   50 (139)
                      ++|||++.++...            .+.|.+.....+|.+.|+|+|.|+.+..  ......|.
T Consensus        17 i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~   79 (80)
T cd05885          17 LRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLD   79 (80)
T ss_pred             EEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEe
Confidence            7999999987431            1468898888899999999999987542  34455444

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.48  E-value=2.3e-07  Score=50.71  Aligned_cols=51  Identities=8%  Similarity=0.049  Sum_probs=40.8

Q ss_pred             EEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.|.|.+.|.|.|.+.|  ++..         .....|.|..+..+|.|.|  .|.|.+|....
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   64 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARH   64 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEE
Confidence            36899999999999998  2211         1345899999999999999  89999997553

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.47  E-value=1.1e-06  Score=51.72  Aligned_cols=37  Identities=22%  Similarity=0.176  Sum_probs=29.1

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +++|.|.++++.|+|.|+|++.+.......+.+.|.|
T Consensus        69 ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          69 NGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             CCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence            3789999999999999999999876444455555543

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.46  E-value=5.3e-07  Score=50.66  Aligned_cols=50  Identities=14%  Similarity=0.161  Sum_probs=39.7

Q ss_pred             EEEEEeeeCCCcEEEE--cCeeee-------------------cceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         73 EIICNVYANPPAKRFD--EGTRFD-------------------EGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        73 ~l~C~~~~~p~~~~~~--~~~~~~-------------------~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      .+.|.+.|.|+|.+.|  ++..+.                   .+.|.|.++...|.|.|  .|.|.+|....
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~   74 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSK   74 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeee
Confidence            4689999999999988  443210                   22588999999999999  89999998764

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.46  E-value=5.7e-07  Score=48.79  Aligned_cols=50  Identities=14%  Similarity=0.246  Sum_probs=40.4

Q ss_pred             EEEEEEeeeCCCcEEEEcC--ee--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         72 AEIICNVYANPPAKRFDEG--TR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~~~--~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.|.|.+.+.|+|.+.|..  ..        ...+.|.|..+..+|.|.|  .|.|.+|...
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   62 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIE   62 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEE
Confidence            4689999999999998822  11        2356899999999999999  8899988754

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.46  E-value=7.1e-07  Score=49.58  Aligned_cols=54  Identities=22%  Similarity=0.314  Sum_probs=40.3

Q ss_pred             EEEEEEeeeCCCcEEEE--cCee------------eecceEEEEecCC----CCceeE--EEEcccCCCCCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTR------------FDEGTVTAKVLQP----FSERTL--SVQDKIGPGPDSNL  125 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~----~d~g~y--~~~n~~g~~~~~~~  125 (139)
                      +.|.|.+.|.|+|.+.|  ++..            ...+.|.|..+..    +|.|.|  .|.|.+|+..+..+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEI   74 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcccc
Confidence            46899999999999988  3322            1246788887754    689999  89999998665443

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.46  E-value=1e-06  Score=49.78  Aligned_cols=52  Identities=12%  Similarity=0.128  Sum_probs=39.6

Q ss_pred             CeEEEEEEeeeCCCc--EEEE--cCeee----------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         70 MRAEIICNVYANPPA--KRFD--EGTRF----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        70 ~~~~l~C~~~~~p~~--~~~~--~~~~~----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +++.|.|.+.+.|.+  .+.|  ++..+                ..+.|.|.+++..|.|.|  .|.|.+|...
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~   74 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS   74 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence            468999999999876  4577  33321                235699999999999999  7788887654

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PHA03376 BARF1; Provisional

Probab=98.46  E-value=3.6e-06  Score=53.94  Aligned_cols=72  Identities=19%  Similarity=0.155  Sum_probs=47.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~   88 (139)
                      -.|.|.+++.+|.|.|+|..+..... .-..-.|.+-.+-.+++..........+...+.|...+.|.|...|
T Consensus        87 vsLvI~~l~lSDdGtY~C~fQkge~~-~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~W  158 (221)
T PHA03376         87 FFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQW  158 (221)
T ss_pred             EEEEEEeeeecCCceEEEEEEcCCCc-eeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchhee
Confidence            56889999999999999999865432 1222333333333343322111222356778999988999999988

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.43  E-value=1.7e-06  Score=47.02  Aligned_cols=51  Identities=8%  Similarity=0.109  Sum_probs=39.0

Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      |+++.|.|.+.|.|.|.+.|  ++..+        ....|.|.++  .|.|.|  .|.|.+|...
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~   63 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIE   63 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEE
Confidence            67899999999999999988  33322        1235777776  478999  8999998754

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.43  E-value=9.7e-07  Score=49.90  Aligned_cols=62  Identities=15%  Similarity=0.138  Sum_probs=47.5

Q ss_pred             CceEeeCCCCeEEEEEEeee-CCCcEEEE--cCee------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         61 KQWIHTAPDMRAEIICNVYA-NPPAKRFD--EGTR------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~~--~~~~------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +....+..|++++|.|.+.+ .|.+.++|  ++..      ...+.|.|..+..+|.|.|  .+.|..|....
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            44556778999999999875 67778888  2211      2346899999999999999  77888877654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.41  E-value=3.6e-07  Score=52.85  Aligned_cols=40  Identities=15%  Similarity=0.259  Sum_probs=32.9

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      ++|++++.++..          .++.|.|.+++.+|+|.|+|.|+|..+.
T Consensus        36 ~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          36 YRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             EEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            789999765311          2589999999999999999999998644

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.41  E-value=2.1e-06  Score=49.89  Aligned_cols=68  Identities=18%  Similarity=0.277  Sum_probs=49.2

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEE-EE--cCeee------------------ecceEEEEecCCCC-ceeE
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKR-FD--EGTRF------------------DEGTVTAKVLQPFS-ERTL  111 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~-~~--~~~~~------------------~~~~l~i~~~~~~d-~g~y  111 (139)
                      +|.+ .......+..|+++.|.|.+.+.|+|.. .|  ++..+                  ....|.|..+...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            4544 5555677789999999999988888754 44  32210                  22468888887766 7899


Q ss_pred             --EEEcccCCCCC
Q psy12134        112 --SVQDKIGPGPD  122 (139)
Q Consensus       112 --~~~n~~g~~~~  122 (139)
                        .|.|.+|+.+.
T Consensus        81 ~C~a~N~~G~d~~   93 (98)
T cd05898          81 NCTAWNSFGSGTA   93 (98)
T ss_pred             EEEEEeCCccceE
Confidence              89999998863

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.39  E-value=9.1e-07  Score=48.80  Aligned_cols=50  Identities=12%  Similarity=0.140  Sum_probs=39.6

Q ss_pred             EEEEEEeeeCCCcEEEE--cCee-------------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTR-------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~-------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.|.|.+.|.|.|.+.|  ++..             ...+.|.|.++..+|.|.|  .|.|.+|...
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~   67 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSIS   67 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEE
Confidence            36899999999999988  2211             1235789999999999999  8899988754

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.39  E-value=1.2e-06  Score=51.16  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=34.7

Q ss_pred             eEEEECCEEee-------------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134          2 LVIFFSKIELL-------------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   50 (139)
Q Consensus         2 ~~W~~~~~~~~-------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~   50 (139)
                      +.|+|++..+.             ..+..|.|..+..+|+|.|+|.+.|.-.. ....+.|+
T Consensus        43 v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C-~~~~i~l~  103 (104)
T cd05896          43 LMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYC-MKVSMSLT  103 (104)
T ss_pred             EEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCCcc-eEEEEEEE
Confidence            78999863321             12577899999999999999999987533 34444444

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.38  E-value=9.3e-07  Score=49.28  Aligned_cols=51  Identities=14%  Similarity=0.267  Sum_probs=40.2

Q ss_pred             EEEEEEeeeCCCcEEEEcCe---e----------------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         72 AEIICNVYANPPAKRFDEGT---R----------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~~~~---~----------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.|.|.+.|.|.|.+.|...   .                ...+.|.|..+..+|.|.|  .|.|.+|....
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   72 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS   72 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence            47899999999999988211   0                1346789999999999999  88999887643

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.36  E-value=1.5e-06  Score=58.12  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=32.1

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ++|+|++.++..        ..+.|.|.+++.+|+|.|+|.+....
T Consensus       166 I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        166 LTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            789999988742        23579999999999999999998754

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.35  E-value=5.4e-07  Score=49.01  Aligned_cols=50  Identities=10%  Similarity=0.096  Sum_probs=39.6

Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee---------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.|.|.+.+.|.|.+.|  ++...         ....|.|.++..+|.|.|  .|.|.+|...
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   63 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSAR   63 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEE
Confidence            46899999999999988  22211         235799999999999999  8899988654

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.33  E-value=1.5e-06  Score=49.06  Aligned_cols=54  Identities=11%  Similarity=-0.016  Sum_probs=41.7

Q ss_pred             CCeEEEEEEeeeC--CCcEEEEc--Cee-----------------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         69 DMRAEIICNVYAN--PPAKRFDE--GTR-----------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        69 g~~~~l~C~~~~~--p~~~~~~~--~~~-----------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      |+.+.|.|.+.+.  |++.+.|.  +..                 .....|.|..+..+|.|.|  .+.|.+|....
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~   77 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE   77 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence            6889999999999  77888882  111                 1234789999999999999  77888776554

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.33  E-value=1.3e-06  Score=48.55  Aligned_cols=52  Identities=21%  Similarity=0.390  Sum_probs=38.8

Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCC----CCceeE--EEEcccCCCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQP----FSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~----~d~g~y--~~~n~~g~~~~~  123 (139)
                      +.|.|.+.|.|.|.+.|  ++..+            ..+.|.|..+..    .|.|.|  .|.|.+|...+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            46899999999999988  33321            245677776664    378999  899999976654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.32  E-value=5.7e-06  Score=46.64  Aligned_cols=55  Identities=9%  Similarity=-0.055  Sum_probs=40.2

Q ss_pred             EeeCCCCeEEEEEEeee-CCCcEEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         64 IHTAPDMRAEIICNVYA-NPPAKRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~-~p~~~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      ..+.+|++++|.|.+.. .+.+.+.|  ++...    ....|.|..+..+|+|.|  .+.+..|
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~   72 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSY   72 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCc
Confidence            35678999999999865 44555666  44432    245799999999999999  5555555

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.32  E-value=1.8e-06  Score=49.95  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=25.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   50 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~   50 (139)
                      ..|.|.+++.+|+|.|+|.+.....  .++.+.|.
T Consensus        62 ~~L~I~nV~~~D~G~YtC~~~t~~~--~~~~~~~~   94 (95)
T cd05882          62 LIISISNVQLSDEGEYTCSIFTMPV--RTAKATVT   94 (95)
T ss_pred             EEEEECCCCcccCEEEEEEEEeecc--ccEEEEEE
Confidence            5899999999999999999987332  34555554

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.27  E-value=2.6e-06  Score=46.79  Aligned_cols=51  Identities=10%  Similarity=0.163  Sum_probs=39.7

Q ss_pred             EEEEEEeee-CCCcEEEE--cCeee---------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         72 AEIICNVYA-NPPAKRFD--EGTRF---------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        72 ~~l~C~~~~-~p~~~~~~--~~~~~---------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.|.|.+.+ .|++.+.|  ++..+               ....|.|..+..+|.|.|  .|.|.+|....
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   71 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV   71 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence            368999999 89999988  33221               124688999999999999  88999998654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.25  E-value=6.9e-06  Score=46.10  Aligned_cols=53  Identities=15%  Similarity=0.092  Sum_probs=37.2

Q ss_pred             eEEEECCEEeeec-------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134          2 LVIFFSKIELLYN-------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      |+|||++.++...             .+.|.|..-..+|...|+|++.|+.-....+...|.|+|.
T Consensus        17 I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y~   82 (82)
T cd05883          17 IRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQYK   82 (82)
T ss_pred             EEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEEC
Confidence            7999999876431             1567774444444458999999977444678888888863

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.22  E-value=5.7e-06  Score=45.65  Aligned_cols=50  Identities=10%  Similarity=0.139  Sum_probs=39.3

Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.|.|.+.+.|+|.+.|  ++..+            ....|.|..+..+|.|.|  .+.|.+|...
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~   66 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDE   66 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcc
Confidence            36899999999999988  22221            123689999999999999  8899988766

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.21  E-value=5.4e-06  Score=46.49  Aligned_cols=50  Identities=14%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v   51 (139)
                      ++|+|++.++...               .+.|.|.....+|.|.|+|++.|... .....+++|+|
T Consensus        17 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v   82 (82)
T cd05759          17 IIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV   82 (82)
T ss_pred             EEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence            7899999865321               13566766666788899999998762 23566666654

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.20  E-value=5.9e-06  Score=48.05  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=27.0

Q ss_pred             CeEEEcccCCCC-CEEEEEEEEcCCCCceeeeEEE
Q psy12134         16 ESLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus        16 ~~L~i~~v~~~d-~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      +.|.|.++.+.| .|.|.|.|.|.+|.. ...++|
T Consensus        64 S~L~I~~~~~~d~~g~Y~C~a~N~~G~d-~~~i~L   97 (98)
T cd05898          64 STLTINNIMEADFQTHYNCTAWNSFGSG-TAIIQL   97 (98)
T ss_pred             EEEEECCCccccCCcEEEEEEEeCCccc-eEEEEe
Confidence            789999998766 799999999999883 555444

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.19  E-value=4.4e-06  Score=47.89  Aligned_cols=50  Identities=14%  Similarity=0.228  Sum_probs=36.1

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCC--CCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNI--GESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~--~~~~s~~~~l~v   51 (139)
                      +.|+|+|.....       ....|.|.+++.+|+|.|+|+..+..  .+..++.+.|.|
T Consensus        32 f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V   90 (91)
T cd05751          32 YRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELVV   90 (91)
T ss_pred             EEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence            578888764321       23679999999999999999998863  122466676665

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.19  E-value=7.1e-06  Score=47.84  Aligned_cols=37  Identities=22%  Similarity=0.444  Sum_probs=31.5

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEc-CCCCceeeeEEEEEe
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVI   52 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n-~~~~~~s~~~~l~v~   52 (139)
                      +.+|.|.+++.+|.|.|.|.+.+ +.|. .+..+.|.|.
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V~   99 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTVY   99 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEEC
Confidence            37899999999999999999999 4565 6888888773

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.16  E-value=1e-05  Score=44.93  Aligned_cols=52  Identities=17%  Similarity=0.142  Sum_probs=38.3

Q ss_pred             EEEEEEeeeCCCcEEEE--cCee------------eecceEEEEecCC----CCceeE--EEEcccCCCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTR------------FDEGTVTAKVLQP----FSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~----~d~g~y--~~~n~~g~~~~~  123 (139)
                      +.|.|.+.|.|.|.+.|  ++..            ...+.|.|..+..    +|.|.|  .|.|.+|...+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            46899999999999988  3331            1345788877642    468999  899999976543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.15  E-value=1.8e-05  Score=45.84  Aligned_cols=54  Identities=13%  Similarity=-0.015  Sum_probs=41.3

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEEcC--e--------------ee-------ecceEEEEecCCCCceeEEEEcc
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFDEG--T--------------RF-------DEGTVTAKVLQPFSERTLSVQDK  116 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~~~--~--------------~~-------~~~~l~i~~~~~~d~g~y~~~n~  116 (139)
                      ...+..|+++.|.|.+.+.|.+.+.|.+  .              +.       ....|.|.++..+|+|.|.|.-.
T Consensus         6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~   82 (95)
T cd05882           6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF   82 (95)
T ss_pred             cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence            3566789999999999999999998821  1              11       12478899999999999955443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.14  E-value=1.8e-06  Score=45.97  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=26.1

Q ss_pred             eEEEECCEEeeec--------CC----eEEEcccCCCCCEEEEEEE
Q psy12134          2 LVIFFSKIELLYN--------RE----SLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~----~L~i~~v~~~d~G~Y~C~~   35 (139)
                      +.|+|++......        ..    .|.|.+++.+|+|.|+|.|
T Consensus        19 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   19 VTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             EEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899987643221        11    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.13  E-value=2e-05  Score=44.86  Aligned_cols=58  Identities=9%  Similarity=-0.057  Sum_probs=43.0

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeEEEEcccCC
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTLSVQDKIGP  119 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y~~~n~~g~  119 (139)
                      +....+..|+++.|.|.+.+ +.+.+.|  ++..         ...+.|.|.++..+|.|.|.|...-++
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            34556778999999999865 5677888  4333         234679999999999999966555443

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.12  E-value=1.2e-05  Score=46.74  Aligned_cols=50  Identities=24%  Similarity=0.228  Sum_probs=38.6

Q ss_pred             eEEEECCEEeee--------c-------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY--------N-------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~-------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|.+++..+..        .       .+.|.|.++..+|+|.|+|.++|.... .+..+.|.|.
T Consensus        36 ~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~-~s~tF~l~v~  100 (101)
T cd05860          36 QQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS-ASVTFNVYVN  100 (101)
T ss_pred             eEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe-EEEEEEEEEe
Confidence            689988654311        0       178999999999999999999999877 5777777654

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.11  E-value=6.5e-06  Score=45.13  Aligned_cols=45  Identities=16%  Similarity=0.048  Sum_probs=35.0

Q ss_pred             EEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcc
Q psy12134         72 AEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      +.|.|.+.|.|+|.+.|  ++..         .....|.|.++..+|+|.|  .+.|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~   58 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIK   58 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEcc
Confidence            36899999999999988  3322         1344799999999999999  55554

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.09  E-value=8.2e-06  Score=47.13  Aligned_cols=58  Identities=7%  Similarity=-0.105  Sum_probs=44.8

Q ss_pred             EeeCCCCeEEEEEEeee-----CCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         64 IHTAPDMRAEIICNVYA-----NPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~-----~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+.+|+.+.|.|.+.+     .|.+.+.|  ++..            ..++.|.|..+..+|+|.|  .+.|..|..+
T Consensus         9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~   87 (94)
T cd05756           9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMK   87 (94)
T ss_pred             EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence            35568999999999998     68888888  3221            1245789999999999999  7788777654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.08  E-value=3.9e-05  Score=39.86  Aligned_cols=51  Identities=14%  Similarity=0.180  Sum_probs=38.7

Q ss_pred             CCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccC
Q psy12134         68 PDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      +|+++.|.|.+.+.|.+.+.|  ++..        .....|.|..+...|.|.|  .+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478999999998888888888  3322        2345799999999999999  5555543

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.07  E-value=1.6e-05  Score=46.11  Aligned_cols=37  Identities=22%  Similarity=0.415  Sum_probs=31.6

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +..|.|.+++.+|+|.|.|.+.+..+......+.|.|
T Consensus        60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          60 DYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             ceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            3789999999999999999999887776677777766

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.07  E-value=2e-05  Score=45.57  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=26.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+.  +..+.|.|
T Consensus        62 ~sL~I~~v~~~DsG~Y~C~~~t~~~~--~~~~~l~v   95 (95)
T cd07701          62 LSISISDVSLSDEGQYTCSLFTMPVK--TSKAYLTV   95 (95)
T ss_pred             EEEEECcCCcccCEEEEEEeEeecCc--cEEEEEEC
Confidence            57999999999999999999975333  45555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.05  E-value=1.9e-05  Score=45.78  Aligned_cols=37  Identities=27%  Similarity=0.464  Sum_probs=30.1

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcC-CCCceeeeEEEEEe
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVI   52 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~-~~~~~s~~~~l~v~   52 (139)
                      +.+|.|.+++.+|+|.|+|++.+. .|. ..+...|.|.
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~-~~~~~~l~~~   96 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAVTFPLGN-TQSSTTVTVL   96 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEEeCCCCC-eeEEEEEEEC
Confidence            478999999999999999998664 465 6777777763

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.05  E-value=2.1e-05  Score=44.54  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEE
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      +.|++++.++..      ....|.|..++..|+|.|.|.+.
T Consensus        27 v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872          27 PVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             EEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence            789999987743      23557789999999999999975

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.05  E-value=2.3e-05  Score=44.70  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=28.9

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   50 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~   50 (139)
                      +..|.|.+++.+|+|.|.|++....+......+.|.
T Consensus        56 ~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~   91 (92)
T cd05741          56 NGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR   91 (92)
T ss_pred             CceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence            378999999999999999999887655455555554

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.02  E-value=3.6e-05  Score=43.03  Aligned_cols=56  Identities=18%  Similarity=0.247  Sum_probs=43.1

Q ss_pred             eeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         65 HTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      .+..|+.+.|.|.+.+.|.+.+.|  ++...             ....|.|..+..+|.|.|  .+.|..|..
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~   77 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI   77 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE
Confidence            455799999999999999888888  32221             112578889999999999  678887764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.02  E-value=2.9e-05  Score=43.98  Aligned_cols=53  Identities=13%  Similarity=0.066  Sum_probs=39.7

Q ss_pred             CeEEEEEEeee--CCCcEEEE--cCeee----------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         70 MRAEIICNVYA--NPPAKRFD--EGTRF----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        70 ~~~~l~C~~~~--~p~~~~~~--~~~~~----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +++.|.|.+.+  .+++.+.|  ++..+                ..+.|.|.+++..|.|.|  .|.|.+++...
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a   75 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA   75 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence            46889999976  44677788  44332                124799999999999999  78888877653

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.01  E-value=3.2e-05  Score=44.00  Aligned_cols=53  Identities=9%  Similarity=0.089  Sum_probs=39.0

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcc
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      ...+..|+.+.|.|.+.+ |.+.+.|  ++..            .....|.|..+..+|.|.|  .+.|.
T Consensus         5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~   73 (89)
T cd04979           5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEH   73 (89)
T ss_pred             EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecC
Confidence            345678999999999987 7777888  2221            1224688999999999999  44444

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>smart00410 IG_like Immunoglobulin like

Probab=97.99  E-value=5.5e-05  Score=41.69  Aligned_cols=49  Identities=24%  Similarity=0.360  Sum_probs=35.6

Q ss_pred             eEEEEC-CEEeee--------c--CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFS-KIELLY--------N--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~-~~~~~~--------~--~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+++ +..+..        .  ...|.|.++...|+|.|.|.+.+..+.. ...+.|.|
T Consensus        26 ~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~~l~V   85 (86)
T smart00410       26 VTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA-SSTTTLTV   85 (86)
T ss_pred             EEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-EEEEEEEE
Confidence            679998 554421        1  2679999999999999999999777663 33366554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=97.99  E-value=5.5e-05  Score=41.69  Aligned_cols=49  Identities=24%  Similarity=0.360  Sum_probs=35.6

Q ss_pred             eEEEEC-CEEeee--------c--CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFS-KIELLY--------N--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~-~~~~~~--------~--~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+++ +..+..        .  ...|.|.++...|+|.|.|.+.+..+.. ...+.|.|
T Consensus        26 ~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~~l~V   85 (86)
T smart00409       26 VTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA-SSTTTLTV   85 (86)
T ss_pred             EEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-EEEEEEEE
Confidence            679998 554421        1  2679999999999999999999777663 33366554

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.98  E-value=9.9e-06  Score=46.76  Aligned_cols=26  Identities=15%  Similarity=0.268  Sum_probs=22.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+.
T Consensus        65 ~~L~I~~l~~sDsgtY~C~v~~~~~~   90 (94)
T cd07690          65 FPLIIKNLKIEDSDTYICEVEDKKEE   90 (94)
T ss_pred             EEEEECCCCHHHCEEEEEEECCccce
Confidence            45999999999999999999887543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.97  E-value=5.2e-05  Score=43.84  Aligned_cols=52  Identities=15%  Similarity=0.121  Sum_probs=40.2

Q ss_pred             ceEeeCCCCeEEEEEEeeeCCCcEEEEcC----------e------ee-------ecceEEEEecCCCCceeEEE
Q psy12134         62 QWIHTAPDMRAEIICNVYANPPAKRFDEG----------T------RF-------DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~~~----------~------~~-------~~~~l~i~~~~~~d~g~y~~  113 (139)
                      +...+.+|+++.|.|.+.+.|.+.++|-.          .      +.       ....|.|.++..+|+|.|.|
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C   79 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTC   79 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEE
Confidence            44677899999999999999989898821          0      11       12468899999999999933

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.97  E-value=3.6e-05  Score=44.52  Aligned_cols=58  Identities=7%  Similarity=0.002  Sum_probs=44.4

Q ss_pred             eEeeCCCCeEEEEEEe-eeCCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         63 WIHTAPDMRAEIICNV-YANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~-~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      ...+.+|+.+.|.|.. .+.|++.++|  ++..            ...+.|.+.++..+|.|.|  .|+|.+...
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            3566789999999975 6778889999  2211            1357899999999999999  777775444

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.97  E-value=2.8e-05  Score=45.36  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=29.9

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEc-CCCCceeeeEEEEE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNV   51 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n-~~~~~~s~~~~l~v   51 (139)
                      +..|.|.+++.+|+|.|.|.+.+ +.|. .++.+.|.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence            36799999999999999999998 4455 477777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.96  E-value=4.2e-05  Score=44.07  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=26.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ..|.|.+++.+|+|.|.|.+.+...  .++.+.|.|
T Consensus        62 ~~L~I~~v~~~DsG~Y~C~~~~~~~--~~~~~~~~v   95 (95)
T cd05717          62 LSISISNVSLSDEGRYTCSLYTMPV--QTAKATVTV   95 (95)
T ss_pred             eEEEEccCCcccCEEEEEEEecCCC--ceEEEEEEC
Confidence            4689999999999999999987542  245555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.95  E-value=0.00011  Score=42.08  Aligned_cols=63  Identities=10%  Similarity=0.027  Sum_probs=42.5

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeEEEEcccC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTLSVQDKIG  118 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y~~~n~~g  118 (139)
                      +|.+.+.+.. .+..|++++|.|... .+...+.|  ++..         .....+.|..+..+|.|.|.|+...+
T Consensus         2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            3566665543 667899999999886 44444433  4332         12346889999999999996655433

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.95  E-value=2.4e-05  Score=45.52  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=29.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+. .+..+.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v   99 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV   99 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence            56999999999999999999987665 567777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.93  E-value=4.2e-05  Score=45.91  Aligned_cols=36  Identities=14%  Similarity=0.188  Sum_probs=27.8

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN   50 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~   50 (139)
                      +.+|.|.+++.+|.|.|+|.+.|+.+.. ....+.|.
T Consensus        79 daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~  115 (116)
T cd05879          79 DGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY  115 (116)
T ss_pred             eeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence            3779999999999999999999987532 33445544

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.92  E-value=2.6e-05  Score=43.02  Aligned_cols=51  Identities=12%  Similarity=0.147  Sum_probs=37.2

Q ss_pred             EEEEEEeee-CCCcEEEE--cCeee----------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         72 AEIICNVYA-NPPAKRFD--EGTRF----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        72 ~~l~C~~~~-~p~~~~~~--~~~~~----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.|.|.+.+ .|.+.+.|  ++..+                ....|.|.++..+|.|.|  .+.|.+|....
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~   72 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSV   72 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeE
Confidence            368999875 56677777  33221                124688999999999999  88999887654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.91  E-value=5.2e-05  Score=43.79  Aligned_cols=57  Identities=7%  Similarity=-0.002  Sum_probs=44.6

Q ss_pred             CceEeeCCCCeEEEEEE-eeeCCCcEEEEcCe--e----------eecceEEEEecCCCCce-eE--EEEccc
Q psy12134         61 KQWIHTAPDMRAEIICN-VYANPPAKRFDEGT--R----------FDEGTVTAKVLQPFSER-TL--SVQDKI  117 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~-~~~~p~~~~~~~~~--~----------~~~~~l~i~~~~~~d~g-~y--~~~n~~  117 (139)
                      .+...+.+|+.+.|.|. ..+.|.|.++|-..  .          ...+.|.|.++..+|.| .|  .|.|.+
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence            34567789999999997 68999999999211  1          13579999999999999 79  666664

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.86  E-value=4.7e-05  Score=44.76  Aligned_cols=37  Identities=22%  Similarity=0.370  Sum_probs=31.1

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ...|.|.+++.+|+|.|.|.+.+..+. ..+.+.|.|.
T Consensus        67 ~~sL~I~~v~~sD~G~Y~C~v~~~~~~-~~~~v~L~V~  103 (106)
T cd05714          67 DASLVITDLRLEDSGRYRCEVIDGIED-EQDTVELEVR  103 (106)
T ss_pred             cceEEECCCCHHHCEEEEEEEEcCCCc-eEEEEEEEEE
Confidence            378999999999999999999987655 5777777775

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.85  E-value=9.4e-05  Score=41.69  Aligned_cols=50  Identities=14%  Similarity=0.029  Sum_probs=37.8

Q ss_pred             CCeEEEEEEeeeCCCcEEEEc--Cee----e------------ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         69 DMRAEIICNVYANPPAKRFDE--GTR----F------------DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~~--~~~----~------------~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      |+++.|.|.+.+.|.+.+.|.  +..    .            ....|.|..++.+|.|.|  .+.|..+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~   70 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQ   70 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence            688999999999998888882  110    0            134799999999999999  5555543

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.84  E-value=4.7e-05  Score=44.75  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=30.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+. ....+.|.|.
T Consensus        68 ~sL~I~~v~~~DsG~Y~C~v~~~~~~-~~~~~~l~v~  103 (106)
T cd05877          68 ASLVITDLRLEDYGRYRCEVIDGLED-ESVVVALRLR  103 (106)
T ss_pred             EEEEEccCChHHCEEEEEEEEecccc-eEEEEEEEEE
Confidence            47999999999999999999987766 4677777765

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.81  E-value=4.7e-05  Score=40.82  Aligned_cols=47  Identities=26%  Similarity=0.252  Sum_probs=33.9

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      ++|+++..........|.|..+..+-.|.|.|.+++.     +....|.|.|
T Consensus        19 i~W~kG~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~~-----~~~~~LQVyY   65 (69)
T cd07691          19 ITWKKGKEILEVSNTLLDLGSRINDPRGTYSCKESEP-----NKEKTLQVYY   65 (69)
T ss_pred             EEEecCcccccccccEEeccCcccCCCcceEecCccC-----CCcEEEEEEE
Confidence            7899944333334678999999999999999999761     3444555654

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.80  E-value=8.4e-05  Score=42.90  Aligned_cols=37  Identities=19%  Similarity=0.361  Sum_probs=29.4

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEc-CCCCceeeeEEEEEe
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVI   52 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n-~~~~~~s~~~~l~v~   52 (139)
                      +..|.|.+++.+|+|.|.|.+.+ +.|. ....+.|.|+
T Consensus        61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~-~~~~~~l~V~   98 (98)
T cd05718          61 DATISISNLRLEDEGNYICEFATFPQGN-RQKVTTLTVL   98 (98)
T ss_pred             ceEEEEccCCcccCEEEEEEEEeCCCCc-EEEEEEEEeC
Confidence            36899999999999999999875 4455 5777777663

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.79  E-value=0.00027  Score=42.36  Aligned_cols=37  Identities=24%  Similarity=0.431  Sum_probs=30.8

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.+|.|.+++.+|+|.|.|++.+.... ..+.+.|.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence            478999999999999999999887655 4677777765

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.76  E-value=0.00014  Score=43.42  Aligned_cols=37  Identities=19%  Similarity=0.366  Sum_probs=29.5

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +..|.|.+++.+|+|.|.|.+.+.+.. .+..+.|.|.
T Consensus        73 ~asL~I~nl~~sDsG~Y~C~V~~g~~~-~~~~v~l~v~  109 (112)
T cd05900          73 DATLEITELRSNDSGTYRCEVMHGIED-NYDTVEVQVK  109 (112)
T ss_pred             CcEEEEeecccccCEEEEEEEecCCCC-ceeEEEEEEE
Confidence            478999999999999999999977644 3566666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.75  E-value=0.00012  Score=38.78  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=33.6

Q ss_pred             CCeEEEEEEe-eeCCCcEEEE--cCee------e----ecc----eEEEEecCCCCceeEEEE
Q psy12134         69 DMRAEIICNV-YANPPAKRFD--EGTR------F----DEG----TVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        69 g~~~~l~C~~-~~~p~~~~~~--~~~~------~----~~~----~l~i~~~~~~d~g~y~~~  114 (139)
                      |+++.|.|.+ ...++..+.|  ++..      .    ...    .|.|.++..+|+|.|.|.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   63 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCV   63 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEE
Confidence            7899999999 6667778888  2211      0    111    299999999999999653

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.71  E-value=0.00027  Score=38.81  Aligned_cols=59  Identities=15%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeeee--cceEEEEecCCCCceeEEEEc
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRFD--EGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~--~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      |.+...+  ..+..|+.+.|.|.+.+.|...+.|  ++....  .+.+.+..+..+|.|.|.|.-
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~   64 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQNGLFIPNVSPEDSGNYTCRA   64 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESSEEEESSEEGGGTEEEEEEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeeeeeeeeeeccccCEEEEEEE
Confidence            5555444  3467899999999999988888888  333322  234677888899999994433

...

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.69  E-value=8.8e-05  Score=40.17  Aligned_cols=23  Identities=43%  Similarity=0.668  Sum_probs=21.3

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEc
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .+.|.|.++..+|.|.|+|.|.|
T Consensus        53 ~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   53 NSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eeEEEEccCCHHhCcEEEEEEEC
Confidence            57899999999999999999986

...

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.69  E-value=0.00012  Score=42.37  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=29.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC-CCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI-GESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~-~~~~s~~~~l~v   51 (139)
                      ..|.|.+++.+|+|.|.|.+.... |. .+..+.|+|
T Consensus        61 ~sL~I~nv~~~D~G~Y~C~~~~~p~g~-~~~~~~L~v   96 (97)
T cd05846          61 TSITIWNVTLEDEGCYKCIFNTFPDGS-KSGTMCLTV   96 (97)
T ss_pred             cEEEEeCCceeeeEEEEEEEEeCCCCC-eeeEEEEEE
Confidence            779999999999999999987644 54 677777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.65  E-value=0.00016  Score=42.93  Aligned_cols=37  Identities=22%  Similarity=0.419  Sum_probs=30.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      ..|+|.+++.+|+|.|.|.+...... .++.+.|.|..
T Consensus        72 asL~I~~l~~sD~G~Y~C~v~~~~~~-~~~~v~l~V~g  108 (110)
T cd05878          72 ASLEISRLRSSDSGVYRCEVMHGIED-EQDTVPLEVTG  108 (110)
T ss_pred             EEEEECCCChhhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence            66999999999999999999876544 57777777753

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.65  E-value=0.00015  Score=41.71  Aligned_cols=58  Identities=5%  Similarity=-0.066  Sum_probs=42.9

Q ss_pred             EeeCCCCeEEEEEEeee-----CCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         64 IHTAPDMRAEIICNVYA-----NPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~-----~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+..|.++.|.|....     +|.+.+.|  ++..+        ..+.|.|..+..+|.|.|  .+.|.+|...
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~   79 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence            34567999999998653     24667777  44332        357899999999999999  7787766644

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.65  E-value=5.7e-05  Score=43.64  Aligned_cols=40  Identities=15%  Similarity=0.010  Sum_probs=30.9

Q ss_pred             eEEEECCEEee--------ecCCeEEEcccCCCCCE-EEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELL--------YNRESLDLDRVTLKLAG-LYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~--------~~~~~L~i~~v~~~d~G-~Y~C~~~n~~~~   41 (139)
                      +.|++++....        ..++.|.|.+++.+|+| .|.|.|.|....
T Consensus        36 i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          36 IYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             EEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            68997654321        13589999999999999 899999987633

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.64  E-value=0.00017  Score=39.00  Aligned_cols=58  Identities=17%  Similarity=0.210  Sum_probs=39.5

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCC-CcEEEEcCee-----------eecceEEEEecCCCCceeEEE
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANP-PAKRFDEGTR-----------FDEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~~  113 (139)
                      |.+...+.......+. +.|.|.+.+.+ .+.+.|....           .....|.+..+..+|.|.|.|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C   71 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTC   71 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEE
Confidence            5555544443433333 99999999888 6677886111           234578888999999999933

...

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.63  E-value=0.00024  Score=41.18  Aligned_cols=33  Identities=27%  Similarity=0.293  Sum_probs=25.4

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCC-CCceeeeEE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNI-GESTSKNFI   48 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~-~~~~s~~~~   48 (139)
                      +.+|.|.+++.+|+|.|+|.+.+.. |. ..+.+.
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~-~~~~i~   92 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVTYPQGS-WEKVIE   92 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEeCCCCC-eEEEEE
Confidence            4789999999999999999997654 44 344433

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.57  E-value=0.00019  Score=41.37  Aligned_cols=50  Identities=24%  Similarity=0.279  Sum_probs=33.1

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCC----CCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNI----GESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~----~~~~s~~~~l~v   51 (139)
                      +.|+|+|.....          ....+.|..++.+|+|.|.|......    -+..|+.+.|.|
T Consensus        31 f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sdpl~l~V   94 (94)
T cd05711          31 FILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSDPLKIVV   94 (94)
T ss_pred             EEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCCCCccccCCCCCeEEeC
Confidence            679998754211          13568999999999999999975221    112466666543

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.57  E-value=0.00017  Score=42.87  Aligned_cols=37  Identities=24%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.+|.|.+++.+|+|.|.|.+...... .++.+.|.|.
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~-~~~~v~L~V~  107 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGIND-EQDTVPLEVT  107 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCcc-cEEEEEEEEE
Confidence            368999999999999999999886543 5777777775

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.55  E-value=0.0006  Score=39.17  Aligned_cols=52  Identities=13%  Similarity=0.100  Sum_probs=38.7

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEEcC---e-------------ee-------ecceEEEEecCCCCceeEEEE
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFDEG---T-------------RF-------DEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~~~---~-------------~~-------~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      ...+.+|+++.|.|.+.+.+.+.+.|..   .             +.       ....|.|.++..+|.|.|.|.
T Consensus         6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEE
Confidence            3566789999999999888777788821   0             00       123689999999999999444

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.55  E-value=0.00085  Score=38.42  Aligned_cols=49  Identities=14%  Similarity=0.022  Sum_probs=36.5

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEEcC--e------------e--eecceEEEEecCCCCceeEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFDEG--T------------R--FDEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~~~--~------------~--~~~~~l~i~~~~~~d~g~y~~  113 (139)
                      ..+.+|+++.|.|... .|.+.+.|-.  .            .  ...+.|.|..+..+|+|.|.|
T Consensus         6 ~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C   70 (91)
T cd05871           6 VYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTC   70 (91)
T ss_pred             EEEecCCcEEEEEECC-CCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEE
Confidence            3456899999999974 7778888821  0            0  133579999999999999933

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.53  E-value=0.0012  Score=37.98  Aligned_cols=62  Identities=11%  Similarity=0.051  Sum_probs=40.6

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee------------eecceEEEEecCCCCceeEEEEcccC
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTLSVQDKIG  118 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y~~~n~~g  118 (139)
                      |.+.+.+. ..+..|++++|.|.... ....+.|  ++..            .....+.|..++.+|+|.|.|.....
T Consensus         2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~   77 (94)
T cd05711           2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYN   77 (94)
T ss_pred             CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECC
Confidence            55665554 35678999999998765 3334444  2221            01335788899999999997765433

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.52  E-value=0.0002  Score=41.29  Aligned_cols=54  Identities=19%  Similarity=0.102  Sum_probs=39.6

Q ss_pred             eeCCCCeEEEEEEeeeCCCcEEEEc--C-ee---------------------e-----e--cceEEEEecCCCCceeE--
Q psy12134         65 HTAPDMRAEIICNVYANPPAKRFDE--G-TR---------------------F-----D--EGTVTAKVLQPFSERTL--  111 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~~~~~--~-~~---------------------~-----~--~~~l~i~~~~~~d~g~y--  111 (139)
                      .+..|++++|.|...+.+.+.+.|.  + ..                     .     .  ...|+|.++..+|.|+|  
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            4568999999999998888888883  1 10                     0     0  12599999999999999  


Q ss_pred             EEEcccC
Q psy12134        112 SVQDKIG  118 (139)
Q Consensus       112 ~~~n~~g  118 (139)
                      .+.|..+
T Consensus        83 ~v~~~~~   89 (94)
T cd07690          83 EVEDKKE   89 (94)
T ss_pred             EECCccc
Confidence            5555544

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.50  E-value=0.00021  Score=42.80  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=26.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN   50 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~   50 (139)
                      ..|.|.+++.+|+|.|.|.+.|+.+.. ....+.|.
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          79 ASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             eEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            469999999999999999999876532 23444443

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=97.49  E-value=0.00075  Score=38.19  Aligned_cols=53  Identities=8%  Similarity=-0.068  Sum_probs=37.5

Q ss_pred             CCeEEEEEEeeeCCCc--EEEE--cCee------------------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         69 DMRAEIICNVYANPPA--KRFD--EGTR------------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~--~~~~--~~~~------------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      |+++.|.|.+.+.+.+  .+.|  .+..                  .....|.|.++..+|.|.|  .|.|..|...
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~   77 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK   77 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence            6889999999876644  5578  1210                  0134689999999999999  6777666444

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.45  E-value=0.0003  Score=42.08  Aligned_cols=35  Identities=14%  Similarity=0.229  Sum_probs=26.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN   50 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~   50 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+.. .+..+.|.
T Consensus        80 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  115 (116)
T cd05715          80 ASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR  115 (116)
T ss_pred             eEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence            569999999999999999999876432 13344444

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.44  E-value=0.0011  Score=38.65  Aligned_cols=59  Identities=12%  Similarity=0.004  Sum_probs=45.6

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcE-EEEc--Cee----------e-------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAK-RFDE--GTR----------F-------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~-~~~~--~~~----------~-------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      ...+..|+.+.|.|.+++.|+|. +.|.  +..          .       -...|.+.++..++.|.|  .|.|...+.
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            45678999999999999999998 7882  110          0       114689999999999999  788886654


Q ss_pred             C
Q psy12134        121 P  121 (139)
Q Consensus       121 ~  121 (139)
                      +
T Consensus        92 s   92 (101)
T cd05860          92 S   92 (101)
T ss_pred             E
Confidence            4

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.42  E-value=0.00069  Score=37.95  Aligned_cols=49  Identities=12%  Similarity=0.032  Sum_probs=29.0

Q ss_pred             eEEEECCEEeeec--------C------CeEEEcccCCCCCEEEEEEEEcCCCC--ceeeeEEEE
Q psy12134          2 LVIFFSKIELLYN--------R------ESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVN   50 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~------~~L~i~~v~~~d~G~Y~C~~~n~~~~--~~s~~~~l~   50 (139)
                      |+|++++.++...        +      +.|.+......+.+.|+|++.|+...  ...+...|.
T Consensus        17 v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~~~~~~~~~~~   81 (82)
T cd05761          17 IRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKSTDKQTQQVLE   81 (82)
T ss_pred             EEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCCCCceeEEEEe
Confidence            7899999876321        1      33444333344557999999987633  234444443

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.34  E-value=0.0011  Score=37.23  Aligned_cols=49  Identities=10%  Similarity=0.005  Sum_probs=29.6

Q ss_pred             eEEEECCEEeeec--------C-------CeEEEcccCCCCCEEEEEEEEcCCCC--ceeeeEEEE
Q psy12134          2 LVIFFSKIELLYN--------R-------ESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVN   50 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~-------~~L~i~~v~~~d~G~Y~C~~~n~~~~--~~s~~~~l~   50 (139)
                      |+|+++|.++...        .       +.|.|......|...|+|++.++...  ..++...|.
T Consensus        17 ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~~   82 (83)
T cd07705          17 IKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQRIE   82 (83)
T ss_pred             eEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEEEee
Confidence            7899999875321        1       33444334445667999999987632  244554443

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PHA02633 hypothetical protein; Provisional

Probab=97.25  E-value=0.0015  Score=34.31  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      +..|-|-++..+|+|.|.|...|.- .+...++.|.|...
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t-~c~~~si~l~V~~~   55 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNET-YSDMMKFDLCICLR   55 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCC-eeEEEEEEEEEeec
Confidence            4668888999999999999998753 33566677777643

>KOG3515|consensus

Probab=97.24  E-value=0.0022  Score=49.52  Aligned_cols=125  Identities=16%  Similarity=0.168  Sum_probs=85.3

Q ss_pred             eEEEECCEEee-----ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEE
Q psy12134          2 LVIFFSKIELL-----YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC   76 (139)
Q Consensus         2 ~~W~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C   76 (139)
                      +.|++.+..+.     ..+..|...++.++.-+.|-|++.|..+........+.|.++|.-...........+..+.+.|
T Consensus        40 ~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c  119 (741)
T KOG3515|consen   40 VEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIIC  119 (741)
T ss_pred             eEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEE
Confidence            67998776554     2357788888888888999999999988777888899999988665444433445678888888


Q ss_pred             Ee--eeCCCcEEEEc--Cee--------------------eecceEEEEecCCCCceeE--EEEcccCCCCCCCCc
Q psy12134         77 NV--YANPPAKRFDE--GTR--------------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLR  126 (139)
Q Consensus        77 ~~--~~~p~~~~~~~--~~~--------------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~  126 (139)
                      .+  .+.|.+.+.|.  +..                    .....+.+...+..+.|.|  .+.|++-........
T Consensus       120 ~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~  195 (741)
T KOG3515|consen  120 SAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQ  195 (741)
T ss_pred             eecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccce
Confidence            54  34566667771  111                    0123567777788899999  556653333333333

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.24  E-value=0.0022  Score=41.37  Aligned_cols=39  Identities=23%  Similarity=0.325  Sum_probs=31.3

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcC-CCCceeeeEEEEEec
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIY   53 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~-~~~~~s~~~~l~v~~   53 (139)
                      .+.|+|.+++.+|+|.|.|..... .|...+....|.|..
T Consensus        84 ~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987         84 ESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             cceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence            478999999999999999998654 352467888888874

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.18  E-value=0.0013  Score=38.61  Aligned_cols=53  Identities=9%  Similarity=-0.029  Sum_probs=38.4

Q ss_pred             cCceEeeCCCCeEEEEEEeeeCCCcEEEEcCe-----e-------------------e------ecceEEEEecCCCCce
Q psy12134         60 EKQWIHTAPDMRAEIICNVYANPPAKRFDEGT-----R-------------------F------DEGTVTAKVLQPFSER  109 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~~-----~-------------------~------~~~~l~i~~~~~~d~g  109 (139)
                      .+....+.+|+++.|.|.+...+...++|-..     .                   .      ....|.|.+++.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            34456678899999999998776667777110     0                   0      1236888999999999


Q ss_pred             eEE
Q psy12134        110 TLS  112 (139)
Q Consensus       110 ~y~  112 (139)
                      .|.
T Consensus        84 ~Y~   86 (109)
T cd04983          84 VYF   86 (109)
T ss_pred             EEE
Confidence            993

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.16  E-value=0.00066  Score=39.79  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        79 ~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   79 FSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             EEEEESSESGGGEEEEEEEEEES
T ss_pred             EEEEECCCCcCcCEEEEEEEEEC
Confidence            46999999999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.11  E-value=0.0018  Score=38.19  Aligned_cols=51  Identities=12%  Similarity=0.233  Sum_probs=36.9

Q ss_pred             cCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCee----------------------e-------ecceEEEEecCCC
Q psy12134         60 EKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTR----------------------F-------DEGTVTAKVLQPF  106 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~----------------------~-------~~~~l~i~~~~~~  106 (139)
                      .+....+.+|+++.|.|...+ +.+.++|    .+..                      .       ....|.|.++..+
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~   82 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE   82 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence            445567788999999999987 6666777    1100                      0       1236888999999


Q ss_pred             CceeE
Q psy12134        107 SERTL  111 (139)
Q Consensus       107 d~g~y  111 (139)
                      |+|.|
T Consensus        83 Dsg~Y   87 (110)
T cd05899          83 DSAVY   87 (110)
T ss_pred             hCEEE
Confidence            99999

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.06  E-value=0.0018  Score=36.62  Aligned_cols=52  Identities=19%  Similarity=0.201  Sum_probs=39.0

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeEEEEcc
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTLSVQDK  116 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y~~~n~  116 (139)
                      ..+..|+++.|.|...+. .+.+.|  ++...        ....|.|..+..+|+|.|.|...
T Consensus         6 ~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           6 RTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             EEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence            456789999999999876 557777  44432        33457899999999999966554

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>smart00409 IG Immunoglobulin

Probab=97.06  E-value=0.0062  Score=33.18  Aligned_cols=50  Identities=18%  Similarity=0.274  Sum_probs=37.3

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--c-Cee---------ee---cceEEEEecCCCCceeEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--E-GTR---------FD---EGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~-~~~---------~~---~~~l~i~~~~~~d~g~y~~  113 (139)
                      ..+..|+++.|.|.+.+.+.+.++|  + +..         ..   ...|.+..+...|.|.|.|
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   68 (86)
T smart00409        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTC   68 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEE
Confidence            3556799999999999887777777  3 221         11   2478999999999999933

>smart00410 IG_like Immunoglobulin like

Probab=97.06  E-value=0.0062  Score=33.18  Aligned_cols=50  Identities=18%  Similarity=0.274  Sum_probs=37.3

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--c-Cee---------ee---cceEEEEecCCCCceeEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--E-GTR---------FD---EGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~-~~~---------~~---~~~l~i~~~~~~d~g~y~~  113 (139)
                      ..+..|+++.|.|.+.+.+.+.++|  + +..         ..   ...|.+..+...|.|.|.|
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   68 (86)
T smart00410        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTC   68 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEE
Confidence            3556799999999999887777777  3 221         11   2478999999999999933

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.06  E-value=0.002  Score=37.25  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=20.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        62 ~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881          62 LRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             EEEEECcCCcccCEEEEEEEEcc
Confidence            45999999999999999999754

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd00098 IgC Immunoglobulin Constant domain

Probab=96.96  E-value=0.0011  Score=37.96  Aligned_cols=38  Identities=13%  Similarity=0.241  Sum_probs=26.7

Q ss_pred             eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |+|+++|.++...          +      +.|.+......|.+.|+|++.+..
T Consensus        32 i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~   85 (95)
T cd00098          32 VTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES   85 (95)
T ss_pred             EEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence            7899998775321          1      345555555568999999998864

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=96.96  E-value=0.001  Score=38.75  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG   40 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~   40 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+
T Consensus        67 ~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          67 FTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCC
Confidence            4789999999999999999987653

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00096 Ig Immunoglobulin domain

Probab=96.95  E-value=0.0028  Score=32.90  Aligned_cols=38  Identities=29%  Similarity=0.445  Sum_probs=29.3

Q ss_pred             eEEEECCEEee--------------ecCCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELL--------------YNRESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~--------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      +.|++++....              .....|.|.++...|.|.|.|.+.+..
T Consensus        15 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          15 ITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            68999775532              123678899999999999999998754

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.88  E-value=0.0069  Score=35.00  Aligned_cols=53  Identities=19%  Similarity=0.010  Sum_probs=35.9

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEE--cC--------e------e-------eecceEEEEecCCCCceeEEEEc
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFD--EG--------T------R-------FDEGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~--------~------~-------~~~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      ...+.+|+++.|.|.+.......+.|  .+        .      +       ...-.|.|..+..+|+|.|.|+-
T Consensus         6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv   81 (95)
T cd05881           6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQL   81 (95)
T ss_pred             ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEE
Confidence            35677899999999998864333333  00        0      0       01225899999999999995543

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.83  E-value=0.0057  Score=36.38  Aligned_cols=51  Identities=20%  Similarity=0.155  Sum_probs=36.2

Q ss_pred             CceEeeCCCCeEEEEEEeee--CCCcEEEEc----Cee-----------------------e--------ecceEEEEec
Q psy12134         61 KQWIHTAPDMRAEIICNVYA--NPPAKRFDE----GTR-----------------------F--------DEGTVTAKVL  103 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~--~p~~~~~~~----~~~-----------------------~--------~~~~l~i~~~  103 (139)
                      +....+.+|+++.|.|.+..  .+.+.++|-    +..                       .        ....|.|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            44556678999999999876  556666771    110                       0        1236889999


Q ss_pred             CCCCceeE
Q psy12134        104 QPFSERTL  111 (139)
Q Consensus       104 ~~~d~g~y  111 (139)
                      +.+|+|.|
T Consensus        85 ~~~Dsg~Y   92 (116)
T cd04982          85 EKEDSATY   92 (116)
T ss_pred             CHHHCEEE
Confidence            99999999

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.82  E-value=0.004  Score=36.48  Aligned_cols=53  Identities=17%  Similarity=0.158  Sum_probs=36.5

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCC-CcEEEEc----Cee------------------e------ecceEEEEecCCCCce
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANP-PAKRFDE----GTR------------------F------DEGTVTAKVLQPFSER  109 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~~----~~~------------------~------~~~~l~i~~~~~~d~g  109 (139)
                      ..+....+.+|+++.|.|.+.+.. ...++|-    +..                  .      ....|.|.++..+|.|
T Consensus         5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg   84 (106)
T cd04980           5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAA   84 (106)
T ss_pred             ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCE
Confidence            445556778899999999987654 4456671    110                  0      1125888999999999


Q ss_pred             eE
Q psy12134        110 TL  111 (139)
Q Consensus       110 ~y  111 (139)
                      .|
T Consensus        85 ~Y   86 (106)
T cd04980          85 VY   86 (106)
T ss_pred             EE
Confidence            99

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=96.81  E-value=0.0055  Score=36.07  Aligned_cols=50  Identities=4%  Similarity=-0.051  Sum_probs=33.5

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEEcCe-------e-----------------------eecceEEEEecCCCCceeEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFDEGT-------R-----------------------FDEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~~~~-------~-----------------------~~~~~l~i~~~~~~d~g~y~~  113 (139)
                      ..+.+|+++.|.|.........+.|.+.       .                       ..+++|.|.++...|.|.|.|
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~   87 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL   87 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence            3556788888888654333335566111       0                       235689999999999999944

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=96.79  E-value=0.0037  Score=35.14  Aligned_cols=38  Identities=13%  Similarity=0.054  Sum_probs=25.3

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |+|+|+|.++...               .+.|.+..-...+...|+|++.+..
T Consensus        17 itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884          17 IRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            7899999875321               1345554333455668999998865

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.76  E-value=0.0091  Score=33.83  Aligned_cols=37  Identities=19%  Similarity=0.217  Sum_probs=28.5

Q ss_pred             eEEEECCEEee----ecCCeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELL----YNRESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      +.|+-.+....    ..+..|.+.++...|+|.++|.++..
T Consensus        33 i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          33 VEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             EEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            57886554422    35688999999999999999999643

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.66  E-value=0.0036  Score=33.35  Aligned_cols=35  Identities=17%  Similarity=0.052  Sum_probs=27.2

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEc
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      +.|.+++..+...+..+.+.+-. +++|.|.|.+.+
T Consensus        21 i~W~~n~~~~~g~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692          21 IKWKKNDQVSQGSDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             ceEEeCCccCCCCCceEEeeccC-CCCceEEEEeCC
Confidence            57999986666655667776776 889999999854

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=96.64  E-value=0.004  Score=36.18  Aligned_cols=49  Identities=16%  Similarity=0.103  Sum_probs=32.6

Q ss_pred             eCCCCeEEEEEEeeeC-CCcEEEE----cCee-----------------------e------ecceEEEEecCCCCceeE
Q psy12134         66 TAPDMRAEIICNVYAN-PPAKRFD----EGTR-----------------------F------DEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~-p~~~~~~----~~~~-----------------------~------~~~~l~i~~~~~~d~g~y  111 (139)
                      +.+|++++|.|..... +...++|    .+..                       .      ....|.|.+++.+|.|.|
T Consensus         3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y   82 (105)
T cd00099           3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY   82 (105)
T ss_pred             ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence            4578888888888765 4445566    1000                       0      123788999999999999


Q ss_pred             EEE
Q psy12134        112 SVQ  114 (139)
Q Consensus       112 ~~~  114 (139)
                      .|.
T Consensus        83 ~C~   85 (105)
T cd00099          83 YCA   85 (105)
T ss_pred             EEE
Confidence            443

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=96.62  E-value=0.0022  Score=37.65  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ..|.|.+++.+|+|.|.|.+.+..
T Consensus        70 ~~L~I~~~~~~DsG~Y~C~~~~~~   93 (109)
T cd04983          70 SSLHISAAQLSDSAVYFCALSESG   93 (109)
T ss_pred             EEEEECCCCHHHCEEEEEEEecCC
Confidence            579999999999999999998653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=96.62  E-value=0.0061  Score=34.54  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=17.8

Q ss_pred             ecceEEEEecCCCCceeEEEEc
Q psy12134         94 DEGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        94 ~~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      .+++|.|.+++.+|+|.|.|+-
T Consensus        55 ~~~sL~I~~l~~~DsG~Y~c~v   76 (92)
T cd05741          55 PNGSLLIQNLTKEDSGTYTLQI   76 (92)
T ss_pred             CCceEEEccCCchhcEEEEEEE
Confidence            3468999999999999994443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=96.45  E-value=0.042  Score=30.70  Aligned_cols=50  Identities=14%  Similarity=0.057  Sum_probs=35.8

Q ss_pred             EEEEEEee-eCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         72 AEIICNVY-ANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        72 ~~l~C~~~-~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.|.|... +.|++.+.|  ++..+              ..+.|.+.....+|.+.|  .|.|..+...
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~   70 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQ   70 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence            67999975 678888877  33321              123688888889999999  7777766554

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=96.40  E-value=0.016  Score=33.48  Aligned_cols=57  Identities=4%  Similarity=-0.101  Sum_probs=39.4

Q ss_pred             eeCCCCeEEEEEEe-e----eCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         65 HTAPDMRAEIICNV-Y----ANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        65 ~~~~g~~~~l~C~~-~----~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .+..|.+..|.|.- .    .++.+.+.|  ++..+           ....|.|..+..+|.|.|  .+.+.+|...
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            44578889999973 2    235567777  44332           124799999999999999  6677655543

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=96.40  E-value=0.0077  Score=34.74  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=20.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        63 ~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          63 ASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             EEEEECCCChhhCEEEEEEEccC
Confidence            46899999999999999998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.40  E-value=0.013  Score=34.14  Aligned_cols=54  Identities=13%  Similarity=0.075  Sum_probs=37.2

Q ss_pred             cCceEeeCCCCeEEEEEEee-eCCCcEEEEcCee------------------------------e-----ecceEEEEec
Q psy12134         60 EKQWIHTAPDMRAEIICNVY-ANPPAKRFDEGTR------------------------------F-----DEGTVTAKVL  103 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~~p~~~~~~~~~~------------------------------~-----~~~~l~i~~~  103 (139)
                      .+....+..|+++.|.|... ......++|....                              .     ....|.|.++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            34556777899999999998 3445566771100                              0     1135999999


Q ss_pred             CCCCceeEEE
Q psy12134        104 QPFSERTLSV  113 (139)
Q Consensus       104 ~~~d~g~y~~  113 (139)
                      ..+|+|.|.|
T Consensus        87 ~~~DsG~Y~C   96 (114)
T PF07686_consen   87 QPSDSGTYFC   96 (114)
T ss_dssp             SGGGEEEEEE
T ss_pred             CcCcCEEEEE
Confidence            9999999943

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=96.33  E-value=0.024  Score=33.75  Aligned_cols=27  Identities=15%  Similarity=0.092  Sum_probs=20.8

Q ss_pred             cceEEEEecCCCCceeEEEEcccCCCC
Q psy12134         95 EGTVTAKVLQPFSERTLSVQDKIGPGP  121 (139)
Q Consensus        95 ~~~l~i~~~~~~d~g~y~~~n~~g~~~  121 (139)
                      ...|.|.+++.+|+|+|.|.-..|...
T Consensus        73 ~asL~I~nl~~sDsG~Y~C~V~~g~~~   99 (112)
T cd05900          73 DATLEITELRSNDSGTYRCEVMHGIED   99 (112)
T ss_pred             CcEEEEeecccccCEEEEEEEecCCCC
Confidence            458999999999999996655555433

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.31  E-value=0.011  Score=34.42  Aligned_cols=39  Identities=13%  Similarity=0.248  Sum_probs=27.0

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCE-EEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAG-LYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G-~Y~C~~~n~~~~   41 (139)
                      |+|||++..+...            ..+|.+. +.++|.| .|+|+|.+.++.
T Consensus        36 i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          36 VVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP   87 (100)
T ss_pred             EEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence            6899999876432            1445554 4556665 899999987644

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.28  E-value=0.007  Score=35.44  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=20.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          71 FTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             EEEEECCCChHHCEEEEEEEeCC
Confidence            45899999999999999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=96.10  E-value=0.031  Score=33.26  Aligned_cols=53  Identities=9%  Similarity=-0.016  Sum_probs=35.6

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeC-CCcEEEEc----Cee--------------------e------ecceEEEEecCCCC
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYAN-PPAKRFDE----GTR--------------------F------DEGTVTAKVLQPFS  107 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~~----~~~--------------------~------~~~~l~i~~~~~~d  107 (139)
                      +.+....+..|+++.|.|..... ....++|-    +..                    .      ....|.|..+..+|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            34455677889999999987653 34445671    110                    0      11258888999999


Q ss_pred             ceeE
Q psy12134        108 ERTL  111 (139)
Q Consensus       108 ~g~y  111 (139)
                      .|.|
T Consensus        84 sg~Y   87 (116)
T cd07706          84 SAKY   87 (116)
T ss_pred             CEEE
Confidence            9999

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>smart00407 IGc1 Immunoglobulin C-Type

Probab=96.07  E-value=0.02  Score=31.39  Aligned_cols=37  Identities=14%  Similarity=0.216  Sum_probs=23.5

Q ss_pred             eEEEECCEEeee----------cC------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLY----------NR------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ++|+|+|.++..          .+      +.|.|......+...|+|++.+.
T Consensus        18 v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407       18 VTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             EEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            789999986321          11      34555444445667899998764

>smart00406 IGv Immunoglobulin V-Type

Probab=96.06  E-value=0.0035  Score=34.36  Aligned_cols=20  Identities=25%  Similarity=0.522  Sum_probs=17.8

Q ss_pred             CeEEEcccCCCCCEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~   35 (139)
                      ..|.|.+++.+|+|.|.|.+
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       62 VSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEcCCCHHHCEEEEEcC
Confidence            56899999999999999963

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=96.01  E-value=0.012  Score=33.91  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        64 ~~L~I~~v~~~DsG~Y~C~~~~~   86 (98)
T cd05716          64 FTVTLNQLRKEDAGWYWCGVGDD   86 (98)
T ss_pred             EEEEEcCCCHHHCEEEEEEcccC
Confidence            56899999999999999998754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=95.96  E-value=0.012  Score=34.65  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=18.9

Q ss_pred             eEEEcccCCCCCEEEEEEEEc
Q psy12134         17 SLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .|.|.+++.+|+|.|.|...+
T Consensus        73 ~L~I~~~~~~Dsg~YyCa~~~   93 (107)
T cd07700          73 RLHINRVKPEDSGTYFCMTVG   93 (107)
T ss_pred             EEEECCCCHHHCEEEEEeEcC
Confidence            489999999999999999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=95.91  E-value=0.009  Score=35.22  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        72 ~~L~I~~~~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          72 SSLTIKSAEPEDSAVYLCASSLG   94 (110)
T ss_pred             cEEEECCCChhhCEEEEEEeeCC
Confidence            56999999999999999999764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=95.88  E-value=0.023  Score=32.72  Aligned_cols=46  Identities=17%  Similarity=0.176  Sum_probs=30.7

Q ss_pred             eCCCCeEEEEEEeeeC--CCcEEEE----cCee------------------e------ecceEEEEecCCCCceeE
Q psy12134         66 TAPDMRAEIICNVYAN--PPAKRFD----EGTR------------------F------DEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~--p~~~~~~----~~~~------------------~------~~~~l~i~~~~~~d~g~y  111 (139)
                      +.+|+++.|.|.....  ....++|    .+..                  .      ....|.|.++..+|+|.|
T Consensus         3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y   78 (98)
T cd04984           3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADY   78 (98)
T ss_pred             cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEE
Confidence            4578899999987654  3344566    1100                  0      123588999999999999

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.72  E-value=0.02  Score=34.91  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             eEEEECCEEeeec-----------------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN-----------------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|.+++..+..-                       ..+|.+.....- .|+|+|++.....+ .+..+.|.+.
T Consensus        49 VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~e-ge~~i~Lk~~  120 (130)
T PF08204_consen   49 VKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVTELSRE-GETTIELKYR  120 (130)
T ss_dssp             EEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEEETTEE-EEEEEEEEE-
T ss_pred             EEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEEecCCC-ceEEEEEEEE
Confidence            6799988875431                       123776654333 69999999876654 4556666553

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=95.62  E-value=0.1  Score=31.15  Aligned_cols=15  Identities=27%  Similarity=0.279  Sum_probs=14.1

Q ss_pred             eEEEEecCCCCceeE
Q psy12134         97 TVTAKVLQPFSERTL  111 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y  111 (139)
                      .|.|.+++.+|+|.|
T Consensus        80 sL~I~~v~~~D~G~Y   94 (115)
T cd05880          80 SILIWQLQPTDNGTY   94 (115)
T ss_pred             EEEEeeCChhhCEEE
Confidence            589999999999999

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=95.49  E-value=0.1  Score=31.21  Aligned_cols=20  Identities=10%  Similarity=0.011  Sum_probs=16.3

Q ss_pred             eEEEEecCCCCceeEEEEcc
Q psy12134         97 TVTAKVLQPFSERTLSVQDK  116 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y~~~n~  116 (139)
                      .|.|.+++.+|+|.|.|.-.
T Consensus        81 sL~I~~l~~~Dsg~Y~C~~~  100 (119)
T cd05712          81 SLLISDAQPEDSGKYFFRVE  100 (119)
T ss_pred             EEEEccCChhhCeEEEEEEE
Confidence            68999999999999955443

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=95.35  E-value=0.021  Score=34.20  Aligned_cols=23  Identities=17%  Similarity=0.039  Sum_probs=20.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|++...
T Consensus        80 ~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          80 CSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEEEccCChhhCeEEEEEEEcC
Confidence            56999999999999999998653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PHA03042 CD47-like protein; Provisional

Probab=95.31  E-value=0.076  Score=36.34  Aligned_cols=40  Identities=23%  Similarity=0.394  Sum_probs=27.7

Q ss_pred             CeEEEECCEEeeecC----CeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134          1 MLVIFFSKIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus         1 ~~~W~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      ++.|.+++......+    ++|.+. -...-.|+|+|++.+...+
T Consensus        52 ~V~Wkf~~~~If~~n~tn~aSL~~~-f~~~l~GNYTCEv~~l~n~   95 (286)
T PHA03042         52 HINWKFNNKVIFKKNNTNTSSLKFN-FSKNLSGNYTCEAINKFNK   95 (286)
T ss_pred             EEEEEeCCeeEEEecCCcceEEEEe-ccccCCCceeEEEeecccC
Confidence            378999998765433    447663 3344579999999876544

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=95.26  E-value=0.078  Score=31.38  Aligned_cols=24  Identities=8%  Similarity=0.041  Sum_probs=19.0

Q ss_pred             ceEEEEecCCCCceeEEEEcccCC
Q psy12134         96 GTVTAKVLQPFSERTLSVQDKIGP  119 (139)
Q Consensus        96 ~~l~i~~~~~~d~g~y~~~n~~g~  119 (139)
                      ..|.|.+++.+|+|+|.|.-..+.
T Consensus        72 asL~I~~l~~sD~G~Y~C~v~~~~   95 (110)
T cd05878          72 ASLEISRLRSSDSGVYRCEVMHGI   95 (110)
T ss_pred             EEEEECCCChhhCEEEEEEEEeCC
Confidence            469999999999999966555443

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=95.25  E-value=0.038  Score=32.85  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.++..+|+|.|.|.+...
T Consensus        72 ~sL~I~~~~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          72 ISLTISALQLEDSAKYFCALSTL   94 (116)
T ss_pred             EEEEECCCCHHHCEEEEEEEECC
Confidence            46899999999999999999753

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.23  E-value=0.081  Score=30.21  Aligned_cols=21  Identities=14%  Similarity=0.207  Sum_probs=17.3

Q ss_pred             ecceEEEEecCCCCceeEEEE
Q psy12134         94 DEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        94 ~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      ....|.|.++..+|+|.|.|.
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718          60 EDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CceEEEEccCCcccCEEEEEE
Confidence            345899999999999999443

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=95.21  E-value=0.23  Score=27.43  Aligned_cols=45  Identities=16%  Similarity=0.296  Sum_probs=27.7

Q ss_pred             EEEEEEeee-CCCcEEEE--cCeee----------ec-------ceEEEEecCCCCceeE--EEEcc
Q psy12134         72 AEIICNVYA-NPPAKRFD--EGTRF----------DE-------GTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        72 ~~l~C~~~~-~p~~~~~~--~~~~~----------~~-------~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      +.|.|.+.+ .|.+.+.|  ++..+          ..       ..|.+.....++.+.|  .+.|.
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~   68 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNE   68 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCc
Confidence            578999987 57778888  33321          11       1344555556677899  55555

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=95.21  E-value=0.2  Score=32.58  Aligned_cols=57  Identities=12%  Similarity=0.120  Sum_probs=39.6

Q ss_pred             EeeCCCCeEEEEEEee-eCCCcEEEEcCee----------------------e-----ecceEEEEecCCCCceeE-EEE
Q psy12134         64 IHTAPDMRAEIICNVY-ANPPAKRFDEGTR----------------------F-----DEGTVTAKVLQPFSERTL-SVQ  114 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~~p~~~~~~~~~~----------------------~-----~~~~l~i~~~~~~d~g~y-~~~  114 (139)
                      ..+.+|+++.|.|... +...+.+.|.+..                      .     ....+.|++++.+|+|.| .-.
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence            4566888999999874 4445566672210                      1     345789999999999999 556


Q ss_pred             cccCCC
Q psy12134        115 DKIGPG  120 (139)
Q Consensus       115 n~~g~~  120 (139)
                      +..+.+
T Consensus       105 ~tfp~G  110 (189)
T PHA02987        105 NTLLSK  110 (189)
T ss_pred             EecCCC
Confidence            666555

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.14  E-value=0.14  Score=30.16  Aligned_cols=37  Identities=30%  Similarity=0.376  Sum_probs=28.2

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +-.|.|..++..|+|.|.-++.+.-|.-....+.+.|
T Consensus        70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            4789999999999999999999987775555565554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=94.97  E-value=0.17  Score=28.74  Aligned_cols=51  Identities=18%  Similarity=0.063  Sum_probs=37.5

Q ss_pred             eeCCCCeEEEEEEeeeCCCc--EEEEcCee--------eecceEEEEecCCCCceeEEEEc
Q psy12134         65 HTAPDMRAEIICNVYANPPA--KRFDEGTR--------FDEGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~--~~~~~~~~--------~~~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      .+..|++++|.|.....+.|  .+.|.+..        .....|.+.++...|.|+..|.=
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V   70 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIV   70 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEE
Confidence            55679999999999765444  77882211        14568999999999999994443

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=94.91  E-value=0.4  Score=28.44  Aligned_cols=16  Identities=19%  Similarity=0.133  Sum_probs=14.4

Q ss_pred             ceEEEEecCCCCceeE
Q psy12134         96 GTVTAKVLQPFSERTL  111 (139)
Q Consensus        96 ~~l~i~~~~~~d~g~y  111 (139)
                      ..|.|.+++.+|+|.|
T Consensus        80 ~sL~I~~v~~~D~G~Y   95 (116)
T cd05715          80 ASIVIHNLQFTDNGTY   95 (116)
T ss_pred             eEEEEeeCCcccCEEE
Confidence            3589999999999999

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=94.91  E-value=0.025  Score=33.61  Aligned_cols=22  Identities=14%  Similarity=0.289  Sum_probs=19.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        77 ~~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          77 STLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EEEEEEECCHHHCEEEEEEEec
Confidence            4689999999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=94.87  E-value=0.089  Score=30.65  Aligned_cols=20  Identities=5%  Similarity=0.056  Sum_probs=16.6

Q ss_pred             cceEEEEecCCCCceeEEEE
Q psy12134         95 EGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        95 ~~~l~i~~~~~~d~g~y~~~  114 (139)
                      ...|.|.+++.+|+|+|.|.
T Consensus        67 ~~sL~I~~v~~sD~G~Y~C~   86 (106)
T cd05714          67 DASLVITDLRLEDSGRYRCE   86 (106)
T ss_pred             cceEEECCCCHHHCEEEEEE
Confidence            45799999999999999443

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.84  E-value=0.036  Score=37.70  Aligned_cols=38  Identities=13%  Similarity=0.074  Sum_probs=29.2

Q ss_pred             eEEEECCEEe-ee-------cCCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIEL-LY-------NRESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~-~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      +.|.-.++.. ..       ..+.|++.+...+++|.|+|.++...
T Consensus        15 y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   15 YLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             eEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            6788754432 21       24789999999999999999998655

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=94.57  E-value=0.093  Score=30.65  Aligned_cols=15  Identities=27%  Similarity=0.133  Sum_probs=13.4

Q ss_pred             eEEEEecCCCCceeE
Q psy12134         97 TVTAKVLQPFSERTL  111 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y  111 (139)
                      .|.|..+..+|+|+|
T Consensus        70 ~L~I~~~~~sDsgtY   84 (104)
T cd05720          70 VLTLKNFQKENEGYY   84 (104)
T ss_pred             EEEECCCCHHHCEEE
Confidence            588889999999999

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=94.57  E-value=0.54  Score=28.14  Aligned_cols=24  Identities=17%  Similarity=0.286  Sum_probs=18.5

Q ss_pred             cceEEEEecCCCCceeE--EEEcccC
Q psy12134         95 EGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        95 ~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      +.++.|.+++.+|.|+|  ...|.-+
T Consensus        79 daSI~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          79 DGSIVIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             eeEEEEccCCcccCEEEEEEEEcCCC
Confidence            35789999999999999  4555533

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=94.56  E-value=0.27  Score=28.92  Aligned_cols=50  Identities=8%  Similarity=0.068  Sum_probs=32.9

Q ss_pred             EeeCCCCeEEEEEEee-----------eCCCcEEEE--cCe-------------e--eecceEEEEecCCCCceeEEE
Q psy12134         64 IHTAPDMRAEIICNVY-----------ANPPAKRFD--EGT-------------R--FDEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~-----------~~p~~~~~~--~~~-------------~--~~~~~l~i~~~~~~d~g~y~~  113 (139)
                      ..+.+|+.+.|.|..-           ......+.|  ++.             +  ..+..|.|..+..+|+|.|.|
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C   87 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC   87 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence            4556899999999861           111224445  321             1  235679999999999999944

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=94.52  E-value=0.084  Score=30.39  Aligned_cols=38  Identities=11%  Similarity=0.114  Sum_probs=22.5

Q ss_pred             eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |+|+++|.++...          +      +.|.+..-...+...|+|++.+..
T Consensus        33 vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          33 VEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             EEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence            7899999875221          1      334343222234568999997643

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=94.47  E-value=0.066  Score=31.12  Aligned_cols=37  Identities=11%  Similarity=0.163  Sum_probs=22.3

Q ss_pred             eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|++||.++...          +      +.|.+..-...+...|+|++.+.
T Consensus        36 v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~   88 (100)
T cd07699          36 VQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE   88 (100)
T ss_pred             EEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence            7899999886311          1      33334333223456899998765

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=94.45  E-value=0.033  Score=32.57  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+.+
T Consensus        69 ~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          69 FVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             EEEEECCCCHHHCEEEEEEEcc
Confidence            4589999999999999998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=94.42  E-value=0.096  Score=30.02  Aligned_cols=51  Identities=14%  Similarity=-0.073  Sum_probs=32.0

Q ss_pred             eeCCCCeEEEEEEeee-CCCcEEEEcCee-----------------------e------ecceEEEEecCCCCceeEEEE
Q psy12134         65 HTAPDMRAEIICNVYA-NPPAKRFDEGTR-----------------------F------DEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~-~p~~~~~~~~~~-----------------------~------~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      .+.+|++++|.|.... ......+|-...                       .      ..-.|.|..+..+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            3457888888888764 234445661100                       0      112588889999999999443


Q ss_pred             c
Q psy12134        115 D  115 (139)
Q Consensus       115 n  115 (139)
                      -
T Consensus        83 ~   83 (98)
T cd05716          83 V   83 (98)
T ss_pred             c
Confidence            3

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=94.33  E-value=0.082  Score=30.46  Aligned_cols=20  Identities=5%  Similarity=0.017  Sum_probs=16.8

Q ss_pred             cceEEEEecCCCCceeEEEE
Q psy12134         95 EGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        95 ~~~l~i~~~~~~d~g~y~~~  114 (139)
                      ..+|.|.+++.+|+|.|.|+
T Consensus        60 ~~sL~I~~~~~~DsG~Y~c~   79 (97)
T cd05775          60 DYSLQISNLKMEDAGSYRAE   79 (97)
T ss_pred             ceeEEECCCchHHCEEEEEE
Confidence            36799999999999999443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=94.29  E-value=0.2  Score=28.85  Aligned_cols=35  Identities=14%  Similarity=0.080  Sum_probs=20.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVN   50 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~   50 (139)
                      +.|.+.--...|.-.|+|++.|+.- ......+.|.
T Consensus        59 S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~   94 (95)
T cd05719          59 SEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN   94 (95)
T ss_pred             EEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence            4565533333444589999998752 2244555554

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=94.10  E-value=0.18  Score=29.29  Aligned_cols=19  Identities=5%  Similarity=-0.039  Sum_probs=15.8

Q ss_pred             ceEEEEecCCCCceeEEEE
Q psy12134         96 GTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        96 ~~l~i~~~~~~d~g~y~~~  114 (139)
                      ..|.|.+++.+|.|+|.|.
T Consensus        68 ~sL~I~~v~~~DsG~Y~C~   86 (106)
T cd05877          68 ASLVITDLRLEDYGRYRCE   86 (106)
T ss_pred             EEEEEccCChHHCEEEEEE
Confidence            4789999999999999443

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>KOG1480|consensus

Probab=93.97  E-value=0.033  Score=43.32  Aligned_cols=51  Identities=20%  Similarity=0.258  Sum_probs=37.2

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++.....       ....+++..+...|+|+|+|++.|-.+......+.+.+.
T Consensus       162 ~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  162 VEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             hhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence            468988755433       347788999999999999999999876654544444443

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.97  E-value=0.58  Score=26.10  Aligned_cols=33  Identities=18%  Similarity=0.134  Sum_probs=23.5

Q ss_pred             EEECCEEeeecCCeEEEcccCCCCCEEEEEEEE
Q psy12134          4 IFFSKIELLYNRESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus         4 W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      |.-.+...............+.+|+|.+.|.|+
T Consensus        31 l~~~~~k~~~~~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   31 LENPGKKSLETKKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             EECSSCEEEEESSEEEEESBTCGGSEEEEEEEE
T ss_pred             eeccCccccccceEEEEecCCCCCCEEEEEEEc
Confidence            333444444455667777888899999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=93.91  E-value=0.27  Score=28.20  Aligned_cols=20  Identities=10%  Similarity=0.006  Sum_probs=16.7

Q ss_pred             ecceEEEEecCCCCceeEEE
Q psy12134         94 DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        94 ~~~~l~i~~~~~~d~g~y~~  113 (139)
                      ....|.|.+++.+|+|.|.|
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C   78 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKC   78 (97)
T ss_pred             CccEEEEeCCceeeeEEEEE
Confidence            34579999999999999933

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>KOG3515|consensus

Probab=93.88  E-value=0.32  Score=38.14  Aligned_cols=86  Identities=15%  Similarity=0.110  Sum_probs=59.8

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCe
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR   71 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~   71 (139)
                      +.|.+.+.++...          ...+-+.++.+.|.|.|.|.+.|..|. ....+.+.+++.|....-........+++
T Consensus       434 ~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg-~~~~~~~~~~~sp~~~~~~~~~~~~~~ns  512 (741)
T KOG3515|consen  434 FYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGG-AQAYLLLGVHTSPHNHHLQDQVEGATGNS  512 (741)
T ss_pred             hhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCc-eeeEEeeccccCCcccccccccccCCCCc
Confidence            4677766654322          122335678999999999999999987 46777778888777653333345567788


Q ss_pred             EEEEEEeeeCCCcE--EEE
Q psy12134         72 AEIICNVYANPPAK--RFD   88 (139)
Q Consensus        72 ~~l~C~~~~~p~~~--~~~   88 (139)
                      +...|.....+...  +.|
T Consensus       513 ~~~~~~q~~~~~~~~m~~~  531 (741)
T KOG3515|consen  513 VDGECMQDEQPQDQQMHHE  531 (741)
T ss_pred             ccceeeccccccchhhhcc
Confidence            99999988877543  345

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=93.44  E-value=0.21  Score=29.21  Aligned_cols=15  Identities=13%  Similarity=0.191  Sum_probs=13.4

Q ss_pred             eEEEEecCCCCceeE
Q psy12134         97 TVTAKVLQPFSERTL  111 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y  111 (139)
                      .|.|.++..+|.|.|
T Consensus        73 ~L~I~~~~~~Dsg~Y   87 (107)
T cd07700          73 RLHINRVKPEDSGTY   87 (107)
T ss_pred             EEEECCCCHHHCEEE
Confidence            488889999999999

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=93.42  E-value=0.75  Score=25.63  Aligned_cols=60  Identities=17%  Similarity=0.132  Sum_probs=34.2

Q ss_pred             EEEEEEeeeC-CCcEEEE--cCeeee----------c-ce------EEEEecCCCCceeEEEEcccCCCCCCCCcceeee
Q psy12134         72 AEIICNVYAN-PPAKRFD--EGTRFD----------E-GT------VTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYM  131 (139)
Q Consensus        72 ~~l~C~~~~~-p~~~~~~--~~~~~~----------~-~~------l~i~~~~~~d~g~y~~~n~~g~~~~~~~~~~~~~  131 (139)
                      +.|.|.+.+. |++.+.|  ++..+.          . +.      |.+......+...|.|+-.+...+.+.+..+.++
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~   81 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQRI   81 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEEEe
Confidence            5789999875 7777778  333211          1 12      2222333455567766666556666666665544

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=93.27  E-value=0.83  Score=26.65  Aligned_cols=29  Identities=10%  Similarity=0.027  Sum_probs=20.2

Q ss_pred             cCceEeeCCCCeEEEEEEeee-CCCcE--EEE
Q psy12134         60 EKQWIHTAPDMRAEIICNVYA-NPPAK--RFD   88 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~-~p~~~--~~~   88 (139)
                      .+....+.+|+.++|.|.+.+ .|.+.  +.|
T Consensus         7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W   38 (100)
T cd05755           7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVL   38 (100)
T ss_pred             ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEE
Confidence            333345578999999999976 45554  466

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=93.10  E-value=0.26  Score=30.27  Aligned_cols=24  Identities=25%  Similarity=0.302  Sum_probs=15.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      +.|.|..-...+.+.|+|++.+..
T Consensus       108 s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771         108 SHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             EEEEecCCccCCCCEEEEEEEcCC
Confidence            455665444445669999998753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=93.07  E-value=0.26  Score=29.44  Aligned_cols=18  Identities=11%  Similarity=0.145  Sum_probs=14.7

Q ss_pred             eEEEEecCCCCceeE-EEE
Q psy12134         97 TVTAKVLQPFSERTL-SVQ  114 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y-~~~  114 (139)
                      .|.|.++..+|+|.| .|.
T Consensus        77 ~L~I~~~~~~Dsa~YyCa~   95 (117)
T cd04981          77 YLQLNSLTPEDTAVYYCAR   95 (117)
T ss_pred             EEEECCCCHHHCEEEEEEE
Confidence            578889999999999 443

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=93.06  E-value=0.4  Score=27.71  Aligned_cols=20  Identities=10%  Similarity=0.139  Sum_probs=17.0

Q ss_pred             ecceEEEEecCCCCceeEEE
Q psy12134         94 DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        94 ~~~~l~i~~~~~~d~g~y~~  113 (139)
                      .+..|.|.+++.+|+|+|.|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888          62 ADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CceEEEEecCccccceEEEE
Confidence            35689999999999999943

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=92.98  E-value=0.33  Score=27.67  Aligned_cols=18  Identities=17%  Similarity=0.218  Sum_probs=12.9

Q ss_pred             ccCCCCCEEEEEEEEcCC
Q psy12134         22 RVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        22 ~v~~~d~G~Y~C~~~n~~   39 (139)
                      .+...+.+.|+|++.+..
T Consensus        66 ~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          66 EVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             EECCCCCCEEEEEEEeCC
Confidence            344457889999998653

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=92.77  E-value=0.66  Score=27.55  Aligned_cols=36  Identities=11%  Similarity=0.087  Sum_probs=21.2

Q ss_pred             eEEEECCEEeeec--------C-------CeEEEcccCCCCCE-EEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN--------R-------ESLDLDRVTLKLAG-LYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~-------~~L~i~~v~~~d~G-~Y~C~~~n~   38 (139)
                      ++|+|||.++...        +       +.|.+. ....|.| .|+|++.+.
T Consensus        40 v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~   91 (111)
T cd05772          40 VKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHR   91 (111)
T ss_pred             EEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeC
Confidence            7899999886421        1       223332 3344444 488888765

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=92.70  E-value=0.38  Score=27.64  Aligned_cols=37  Identities=14%  Similarity=0.216  Sum_probs=22.5

Q ss_pred             eEEEECCEEeee---------cCCeEEE---cccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLY---------NRESLDL---DRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i---~~v~~~d~G~Y~C~~~n~   38 (139)
                      +.|+|||.++..         .+.+..+   -.++..+...|+|++...
T Consensus        34 v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          34 IRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             EEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            789999987531         1222222   133456677899998763

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=92.61  E-value=0.47  Score=27.17  Aligned_cols=18  Identities=6%  Similarity=0.014  Sum_probs=15.7

Q ss_pred             ceEEEEecCCCCceeEEE
Q psy12134         96 GTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        96 ~~l~i~~~~~~d~g~y~~  113 (139)
                      .+|.|.+++.+|+|.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C   82 (100)
T cd05713          65 VALRIHNVRASDEGLYTC   82 (100)
T ss_pred             EEEEEEcCChhhCEEEEE
Confidence            479999999999999944

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.36  E-value=0.21  Score=27.72  Aligned_cols=35  Identities=14%  Similarity=0.206  Sum_probs=22.3

Q ss_pred             eEEEECCEEeee----------cC------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLY----------NR------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |.|++++..+..          .+      +.|.+.   ..+...|+|++.+..
T Consensus        27 v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen   27 VTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             EEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred             EEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence            789999987531          11      344443   455568999987653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=92.28  E-value=0.44  Score=27.31  Aligned_cols=37  Identities=14%  Similarity=0.149  Sum_probs=21.5

Q ss_pred             eEEEECCEEeeec----------CCeEEE---cccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------RESLDL---DRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i---~~v~~~d~G~Y~C~~~n~   38 (139)
                      ++|+++|.++...          +++..+   -.+...+...|+|++.+.
T Consensus        33 v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~   82 (94)
T cd05766          33 VKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHS   82 (94)
T ss_pred             EEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            7899999875331          111111   123344566899988764

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=92.01  E-value=0.15  Score=30.49  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.1

Q ss_pred             eEEEcccCCCCCEEEEEEEEc
Q psy12134         17 SLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .|.|.++..+|+|.|.|.+..
T Consensus        77 ~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          77 YLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             EEEECCCCHHHCEEEEEEEEc
Confidence            589999999999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.97  E-value=0.5  Score=26.40  Aligned_cols=38  Identities=13%  Similarity=0.191  Sum_probs=25.6

Q ss_pred             eEEEECCEEeee---------c------CCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLY---------N------RESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~------~~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |+|+.++..+..         .      .+.|.+..-..++...++|++.++.
T Consensus        32 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~   84 (89)
T PF08205_consen   32 ITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA   84 (89)
T ss_dssp             EEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred             EEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence            789999877611         0      1456664443456678999999875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=91.82  E-value=0.42  Score=27.59  Aligned_cols=24  Identities=8%  Similarity=0.026  Sum_probs=15.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      +.|.+..-..+|...|+|++.+..
T Consensus        59 S~l~~~P~~~d~Gk~ltC~v~h~a   82 (95)
T cd07703          59 SEYSLVPTPEANGKEVTCKVEHET   82 (95)
T ss_pred             EEEEEecCHHHCCCEEEEEEeCcc
Confidence            455553333444558999999864

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=91.80  E-value=0.46  Score=27.33  Aligned_cols=34  Identities=15%  Similarity=0.284  Sum_probs=21.5

Q ss_pred             eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ++|.+||.++...          +      +.|.+   ...+...|+|++...
T Consensus        34 v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~   83 (94)
T cd05767          34 VTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHW   83 (94)
T ss_pred             EEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeC
Confidence            7899999875321          1      23333   334556899998764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.73  E-value=0.96  Score=25.22  Aligned_cols=20  Identities=15%  Similarity=0.242  Sum_probs=15.9

Q ss_pred             CCeEEEEEEe-eeCCCcEEEE
Q psy12134         69 DMRAEIICNV-YANPPAKRFD   88 (139)
Q Consensus        69 g~~~~l~C~~-~~~p~~~~~~   88 (139)
                      ++.+.+.|.+ .+.|++.+.|
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W   34 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITW   34 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEE
T ss_pred             ceEEEEEEEeCCeECCeEEEE
Confidence            7899999976 5678888888

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=91.55  E-value=0.54  Score=26.73  Aligned_cols=20  Identities=15%  Similarity=0.081  Sum_probs=15.9

Q ss_pred             CCeEEEEEEeeeCCCc--EEEE
Q psy12134         69 DMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      ++.+.|.|.+.+..|+  .+.|
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W   35 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTW   35 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEE
Confidence            6789999999997554  4577

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=91.38  E-value=0.45  Score=27.43  Aligned_cols=12  Identities=17%  Similarity=0.407  Sum_probs=8.7

Q ss_pred             CEEEEEEEEcCC
Q psy12134         28 AGLYQCIASNNI   39 (139)
Q Consensus        28 ~G~Y~C~~~n~~   39 (139)
                      .-.|+|.+.+..
T Consensus        75 g~~ysC~V~H~~   86 (96)
T cd07696          75 GDTFQCKVTHPD   86 (96)
T ss_pred             CCcEEEEEECCC
Confidence            347999998753

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=91.21  E-value=0.88  Score=26.07  Aligned_cols=44  Identities=23%  Similarity=0.305  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEEeeeCCCcE--EEE--cCeeeecceEEEEecCCCCceeE
Q psy12134         67 APDMRAEIICNVYANPPAK--RFD--EGTRFDEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~--~~~--~~~~~~~~~l~i~~~~~~d~g~y  111 (139)
                      ..+...+|.|.+.+.-|+.  +.|  ++.....+ ........+..|+|
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~-~~~~~~~~~~dgTy   59 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG-VVSTELIPNGDWTY   59 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC-ceecceEECCCCcE
Confidence            3578899999999965554  467  44443222 11223333444566

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=90.55  E-value=1.6  Score=25.02  Aligned_cols=43  Identities=19%  Similarity=0.202  Sum_probs=23.8

Q ss_pred             CCCeEEEEEEeeeCCCcE--EEE--cCeeeecceEEEEecCCCCceeE
Q psy12134         68 PDMRAEIICNVYANPPAK--RFD--EGTRFDEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~--~~~--~~~~~~~~~l~i~~~~~~d~g~y  111 (139)
                      .+....|.|.+.++-|..  +.|  +|.....+ .....+..+..|+|
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~-~~~~~~~~~~Dgty   60 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDG-VSETRYYPRQDLSF   60 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCc-eEEeeeEeCCCCcE
Confidence            356679999999975543  467  55443222 11123334444555

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=90.39  E-value=0.67  Score=27.76  Aligned_cols=21  Identities=14%  Similarity=0.113  Sum_probs=16.1

Q ss_pred             CCCeEEEEEEeeeCCCc--EEEE
Q psy12134         68 PDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      .+..+.|.|.+.++-|.  .+.|
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W   39 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSW   39 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEE
Confidence            46779999999997655  4577

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=90.06  E-value=1.6  Score=25.88  Aligned_cols=28  Identities=14%  Similarity=0.262  Sum_probs=19.8

Q ss_pred             eeCCCCeEEEEEEeeeCCCc--EEEE--cCee
Q psy12134         65 HTAPDMRAEIICNVYANPPA--KRFD--EGTR   92 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~--~~~~--~~~~   92 (139)
                      ....|+.+.|.|.+.++-|+  .+.|  |+..
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~   48 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNE   48 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEE
Confidence            44568889999999986554  5577  4444

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=89.66  E-value=1.6  Score=25.05  Aligned_cols=21  Identities=10%  Similarity=-0.089  Sum_probs=15.9

Q ss_pred             CCCeEEEEEEeeeCCCcE--EEE
Q psy12134         68 PDMRAEIICNVYANPPAK--RFD   88 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~--~~~   88 (139)
                      ..+.+.|.|.+.++-|..  +.|
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW   37 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTW   37 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEE
Confidence            466799999999976554  367

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd00098 IgC Immunoglobulin Constant domain

Probab=89.61  E-value=1.6  Score=24.47  Aligned_cols=21  Identities=14%  Similarity=0.090  Sum_probs=17.0

Q ss_pred             CCCeEEEEEEeeeC-CC-cEEEE
Q psy12134         68 PDMRAEIICNVYAN-PP-AKRFD   88 (139)
Q Consensus        68 ~g~~~~l~C~~~~~-p~-~~~~~   88 (139)
                      .|..+.|.|.+.+. |. ..+.|
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W   34 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTW   34 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEE
Confidence            68899999999997 43 45778

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.38  E-value=1.9  Score=23.83  Aligned_cols=26  Identities=15%  Similarity=0.092  Sum_probs=18.6

Q ss_pred             CCCeEEEEEEeeeCCCcE--EEE--cCeee
Q psy12134         68 PDMRAEIICNVYANPPAK--RFD--EGTRF   93 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~--~~~--~~~~~   93 (139)
                      .+..+.|.|.+.+..|..  +.|  ++...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~   36 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEV   36 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEE
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEecccee
Confidence            488999999999865543  477  45443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PHA02982 hypothetical protein; Provisional

Probab=89.22  E-value=4.9  Score=26.87  Aligned_cols=69  Identities=12%  Similarity=0.138  Sum_probs=40.2

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD   88 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~   88 (139)
                      .++|+|..+..+..|-|+|++....+....-.--|.|+-...+..    +. .......+.|.+.....+...|
T Consensus        99 ~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~----W~-e~nNeT~V~CyVgS~~~dvp~W  167 (251)
T PHA02982         99 SSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILYV----VE-EHNNETIITCFVGSKHGDVPRF  167 (251)
T ss_pred             ceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEEE----EE-ecCCeEEEEEEEEeccCCCccE
Confidence            489999999999999999999876654322233344432222211    11 1233456778876544332245

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=89.18  E-value=0.77  Score=26.61  Aligned_cols=26  Identities=15%  Similarity=0.247  Sum_probs=18.2

Q ss_pred             CCCCeEEEEEEeeeCCCc--EEEE--cCee
Q psy12134         67 APDMRAEIICNVYANPPA--KRFD--EGTR   92 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~--~~~~--~~~~   92 (139)
                      ..+..+.|.|.+.+.-|.  .+.|  +|..
T Consensus        15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~   44 (100)
T cd07699          15 EKSGKATLVCLINDFYPGFATVQWKVDGAT   44 (100)
T ss_pred             ccCCCcEEEEEEEeEECCCCEEEEEECCEE
Confidence            356789999999986543  3477  5544

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=88.65  E-value=1.5  Score=25.14  Aligned_cols=26  Identities=15%  Similarity=0.151  Sum_probs=18.0

Q ss_pred             CCCCeEEEEEEeeeCCCcE--EEE--cCee
Q psy12134         67 APDMRAEIICNVYANPPAK--RFD--EGTR   92 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~--~~~--~~~~   92 (139)
                      ..|....|.|.+.++-|+.  +.|  +|..
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~   42 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVK   42 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEE
Confidence            3466779999999976554  367  5544

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PHA03270 envelope glycoprotein C; Provisional

Probab=88.46  E-value=8.4  Score=28.60  Aligned_cols=70  Identities=14%  Similarity=0.100  Sum_probs=50.7

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeC-CCcE--EEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPAK--RFD   88 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~--~~~   88 (139)
                      .|.|..++...+|.|+=+..+..+.. ....+++....+|.+.+...  .+.+|+...-.|.+... |+..  +.|
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrW  256 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRW  256 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEE
Confidence            48999999999999999877765432 34556666777887765543  34589999999998765 4433  367

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=88.31  E-value=3.7  Score=24.71  Aligned_cols=27  Identities=11%  Similarity=0.062  Sum_probs=20.8

Q ss_pred             cceEEEEecCCCCceeEEEEcccCCCC
Q psy12134         95 EGTVTAKVLQPFSERTLSVQDKIGPGP  121 (139)
Q Consensus        95 ~~~l~i~~~~~~d~g~y~~~n~~g~~~  121 (139)
                      +.+|.|.+++.+|.|.|.|.=..|...
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~  104 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIED  104 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcc
Confidence            457999999999999996665555433

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=87.83  E-value=1.9  Score=24.86  Aligned_cols=22  Identities=9%  Similarity=-0.050  Sum_probs=16.2

Q ss_pred             CCCCeEEEEEEeeeCCCcEE--EE
Q psy12134         67 APDMRAEIICNVYANPPAKR--FD   88 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~~--~~   88 (139)
                      ..+..++|.|.+.+.-|+.+  .|
T Consensus        14 ~~~~~~tL~C~a~gFyP~~I~v~W   37 (96)
T cd07697          14 EKQGQGIYLCLLENFFPDVIQVHW   37 (96)
T ss_pred             ccCCCEEEEEEEEEEeCCCeEEEE
Confidence            34677899999999665543  67

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=87.39  E-value=1.6  Score=25.47  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=18.9

Q ss_pred             CCCCeEEEEEEeeeCCCcE--EEE--cCee
Q psy12134         67 APDMRAEIICNVYANPPAK--RFD--EGTR   92 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~--~~~--~~~~   92 (139)
                      ..+..+.|.|.+.++.|..  +.|  ++..
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~   43 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQP   43 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEE
Confidence            3478899999999976654  477  4443

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=87.15  E-value=3.5  Score=22.72  Aligned_cols=17  Identities=24%  Similarity=0.315  Sum_probs=13.5

Q ss_pred             EEEEEEeeeC-CCcEEEE
Q psy12134         72 AEIICNVYAN-PPAKRFD   88 (139)
Q Consensus        72 ~~l~C~~~~~-p~~~~~~   88 (139)
                      +.|.|.+.+. |.+.+.|
T Consensus         2 ~~L~C~~~~~~P~~~v~W   19 (82)
T cd05761           2 VELTCTSSGSKPAATIRW   19 (82)
T ss_pred             EEEEEEecCcCcCCeEEE
Confidence            5789999765 7778888

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=85.17  E-value=1.7  Score=25.07  Aligned_cols=19  Identities=0%  Similarity=-0.106  Sum_probs=16.9

Q ss_pred             ecceEEEEecCCCCceeEE
Q psy12134         94 DEGTVTAKVLQPFSERTLS  112 (139)
Q Consensus        94 ~~~~l~i~~~~~~d~g~y~  112 (139)
                      .+.+|.|.+++.+|+|.|.
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~   76 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYC   76 (96)
T ss_pred             CccEEEEcCCCcccCEEEE
Confidence            5678999999999999993

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=83.79  E-value=1.9  Score=24.97  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=18.9

Q ss_pred             eecceEEEEecCCCCceeE--EEEc
Q psy12134         93 FDEGTVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        93 ~~~~~l~i~~~~~~d~g~y--~~~n  115 (139)
                      ..+.+|.|.+++.+|+|.|  ...+
T Consensus        60 ~~daSi~i~nl~~~D~G~Y~C~v~t   84 (99)
T cd05886          60 FEDGTISLSRLELEDEGVYICEFAT   84 (99)
T ss_pred             CCcceEEEcCCccccCEEEEEEEEe
Confidence            3567899999999999999  4444

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=82.19  E-value=1.8  Score=25.02  Aligned_cols=29  Identities=7%  Similarity=-0.051  Sum_probs=21.1

Q ss_pred             eecceEEEEecCCCCceeEEE---EcccCCCC
Q psy12134         93 FDEGTVTAKVLQPFSERTLSV---QDKIGPGP  121 (139)
Q Consensus        93 ~~~~~l~i~~~~~~d~g~y~~---~n~~g~~~  121 (139)
                      ..+.+|.|.++..+|.|.|.|   ....|+-+
T Consensus        57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~   88 (96)
T cd05887          57 LLDATIMLENVGFSDIGVYICKAVTFPLGNTQ   88 (96)
T ss_pred             CCccEEEEeCCCccccEEEEEEEEeCCCCCee
Confidence            346789999999999999933   33445443

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PHA03269 envelope glycoprotein C; Provisional

Probab=81.96  E-value=12  Score=28.38  Aligned_cols=71  Identities=15%  Similarity=0.121  Sum_probs=49.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC-C-ceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeC-CCcE--EEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG-E-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPAK--RFD   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~-~-~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~--~~~   88 (139)
                      -.|.|..++..++|.|.=++.+... . .....+.+.+..+|.+.+...  .+.+|+...-.|.+... |+..  +.|
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrW  364 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKW  364 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEE
Confidence            4589999999999999877654332 1 134667777777886665443  45589999999998765 4433  367

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=81.29  E-value=2.6  Score=24.27  Aligned_cols=24  Identities=13%  Similarity=0.037  Sum_probs=17.6

Q ss_pred             eeCCCCeEEEEEEeeeC-CCcE--EEE
Q psy12134         65 HTAPDMRAEIICNVYAN-PPAK--RFD   88 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~-p~~~--~~~   88 (139)
                      .+..++.++|.|.+.+. -|+.  +.|
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W   36 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTW   36 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEE
Confidence            44458899999999998 4433  467

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=81.15  E-value=9.1  Score=22.67  Aligned_cols=74  Identities=9%  Similarity=-0.004  Sum_probs=37.6

Q ss_pred             eeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcE--EEEc-Cee--------------eecceEEEEecCCCC
Q psy12134         45 KNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK--RFDE-GTR--------------FDEGTVTAKVLQPFS  107 (139)
Q Consensus        45 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~~~-~~~--------------~~~~~l~i~~~~~~d  107 (139)
                      ..-.+.+...|....++....  .-..+.+.-+....+...  ..|+ +..              ..+-.|.|+.++++|
T Consensus         5 ~~~VvgiSG~pl~LrP~~~Qt--k~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qD   82 (108)
T PF11465_consen    5 ADHVVGISGKPLQLRPSNIQT--KVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQD   82 (108)
T ss_dssp             EEEEEEETTS-EEE--SS-----SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG
T ss_pred             ccceEEccCCEEEECCCCccc--eeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCccc
Confidence            333445555564444332211  224556555555444443  3452 222              123479999999999


Q ss_pred             ceeE--EEEcccCCC
Q psy12134        108 ERTL--SVQDKIGPG  120 (139)
Q Consensus       108 ~g~y--~~~n~~g~~  120 (139)
                      +|.|  +.++.-|..
T Consensus        83 SG~Y~LEvT~~sG~V   97 (108)
T PF11465_consen   83 SGLYCLEVTNESGKV   97 (108)
T ss_dssp             -EEEEEEEEETTSCE
T ss_pred             CceEEEEEEcCCCcE
Confidence            9999  778876654

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>COG5475 Uncharacterized small protein [Function unknown]

Probab=80.04  E-value=6.4  Score=20.25  Aligned_cols=26  Identities=15%  Similarity=0.369  Sum_probs=18.6

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCc
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGES   42 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~   42 (139)
                      +..+++...+  ..|.|.|+..+..|..
T Consensus        17 GP~Mtvs~~s--s~Gmy~C~Wf~g~g~~   42 (60)
T COG5475          17 GPRMTVSGYS--SDGMYECRWFDGYGVK   42 (60)
T ss_pred             CceEEEeccc--cCCeEEEEEecCCCcc
Confidence            4566666554  3399999999988753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-07
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-05
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-10
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-10
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-10
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-05
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-09
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-09
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-09
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-08
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-07
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-08
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-06
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-04
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-08
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-08
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-08
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-07
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-08
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	7e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-08
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-07
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-08
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	9e-07
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	5e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-08
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-08
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-06
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	9e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-04
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-07
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	5e-07
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-04
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-07
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-07
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	9e-07
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-04
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-06
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-06
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-06
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-04
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-06
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-06
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-06
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-06
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-06
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-05
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-05
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-06
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-06
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	9e-06
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-05
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-05
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	9e-05
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-05
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ens_A	96	Advanced glycosylation END product-specific recept	4e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-04
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	6e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	7e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	8e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	8e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-04
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-04
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-04
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	2e-04
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	5e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-04
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	7e-04
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	7e-04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	8e-04
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	9e-04

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 60.1 bits (146), Expect = 3e-12
 Identities = 15/77 (19%), Positives = 32/77 (41%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 66
           ++  +  N + L +  V     G+Y C A+N +G +      + V   P+++     +  
Sbjct: 53  TRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKI 112

Query: 67  APDMRAEIICNVYANPP 83
              ++A + C    NP 
Sbjct: 113 IEGLKAVLPCTTMGNPK 129

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 60.7 bits (147), Expect = 6e-12
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIH 65
            +++L  +  +L L  VT    G Y+C   N +    S   I+NV+Y P + ++   + +
Sbjct: 333 PRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY 392

Query: 66  TAPDMRAEIICNVYANPPAK 85
             P +   + C+  +NPPA+
Sbjct: 393 YRPGVNLSLSCHAASNPPAQ 412

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIH 65
            +++L     +L L  VT   A  Y C   N++  + S    ++V+Y P+   +      
Sbjct: 511 PRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSS 570

Query: 66  TAPDMRAEIICNVYANPPAK 85
                   + C+  +NP  +
Sbjct: 571 YLSGANLNLSCHSASNPSPQ 590

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 54.6 bits (131), Expect = 7e-10
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 66
            +++L     +L L  VT      Y+C   N +    S + I+NV+Y P+         +
Sbjct: 155 PRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTS 214

Query: 67  A-PDMRAEIICNVYANPPA 84
                   + C+  +NPPA
Sbjct: 215 YRSGENLNLSCHAASNPPA 233

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 3/77 (3%)

Query: 10  ELLYNRESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYPPEVSVEKQWIHT 66
            +  + + L +  +T K +GLY C A+N+      +T K   V+   P            
Sbjct: 420 NIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPV 479

Query: 67  APDMRAEIICNVYANPP 83
                    C   A   
Sbjct: 480 EDKDAVAFTCEPEAQNT 496

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 12/80 (15%), Positives = 19/80 (23%), Gaps = 2/80 (2%)

Query: 6   FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIG--ESTSKNFIVNVIYPPEVSVEKQW 63
           +S  E++Y   SL +  +     G Y      +    E  +  F V    P         
Sbjct: 61  YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120

Query: 64  IHTAPDMRAEIICNVYANPP 83
                       C       
Sbjct: 121 KPVEDKDAVAFTCEPETQDA 140

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 3/77 (3%)

Query: 10  ELLYNRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIYPPE--VSVEKQWIHT 66
               + + L +  +T+  +G Y C A N+    + +    + V   P             
Sbjct: 242 TFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPV 301

Query: 67  APDMRAEIICNVYANPP 83
             +    + C       
Sbjct: 302 EDEDAVALTCEPEIQNT 318

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 55.4 bits (133), Expect = 4e-10
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 7/69 (10%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
            L L R+     G Y  + SN+   + +  F V V   P      + +     +   + C
Sbjct: 376 ELHLTRLKGTEGGTYTFLVSNSDV-NAAIAFNVYVNTKP------EILTYDRLVNGMLQC 428

Query: 77  NVYANPPAK 85
                P   
Sbjct: 429 VAAGFPEPT 437

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW---IHTAPDMRAE 73
           +L +    +  +G++ C A+N  G S +    + V+    +++       +        +
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFG-SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 332

Query: 74  IICNVYANPP 83
           +I    A P 
Sbjct: 333 LIVEYEAFPK 342

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
               ++      G Y C   + +  S      V V  P ++ +  + ++   D    + C
Sbjct: 81  EWITEKAEATNTGKYTCTNKHGLSNSIY----VFVRDPAKLFLVDRSLYGKEDNDTLVRC 136

Query: 77  NVYANPPAKRF 87
            +  +P    +
Sbjct: 137 PL-TDPEVTNY 146

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
              +D    K  G  +C A N++G+ TS  F        +  +   
Sbjct: 475 QSSIDSSAFKHNGTVECKAYNDVGK-TSAYFNFAFKGNNKEQIHPH 519

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 11/60 (18%), Positives = 15/60 (25%), Gaps = 4/60 (6%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYANPP 83
                C          S+ FI+ V       P VSV K            + C +     
Sbjct: 181 RLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 54.0 bits (130), Expect = 4e-10
 Identities = 15/67 (22%), Positives = 24/67 (35%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
            L L  V    AG Y C   +      S+   + V   P  +VE + +   P+   ++ C
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSC 120

Query: 77  NVYANPP 83
                P 
Sbjct: 121 EAVGPPE 127

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 54.6 bits (131), Expect = 6e-10
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPD 69
                 + R     +  YQC A     +  S +  + V      PP +++    +     
Sbjct: 142 PWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRG 201

Query: 70  MRAEIICNVYANPP 83
             A+I+C+  +   
Sbjct: 202 EAAQIVCSASSVDV 215

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
              +L+LD+V  + AG Y C+ASN  G   S +    V+     S    
Sbjct: 243 KVLTLNLDQVDFQHAGNYSCVASNVQG-KHSTSMFFRVVESAGNSHHHH 290

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 2/68 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEII 75
            L  +  T +  G Y+C    +     S    + V  P        Q +    D  A + 
Sbjct: 52  ILSTNNATFQNTGTYRCTEPGDPL-GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLP 110

Query: 76  CNVYANPP 83
           C +     
Sbjct: 111 CLLTDPVL 118

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVIYPPEVSVEKQWIHTAPDMRAEII 75
            +    VT +  G Y C+ S   G S  +  + + V+ PP               RA + 
Sbjct: 69  GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLT 128

Query: 76  CNVY-ANPP 83
           C+    +PP
Sbjct: 129 CSEQDGSPP 137

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
             +    +    G Y C+       + +    + +  PP V   K   H      A ++C
Sbjct: 50  KTEFKVDSDDQWGEYSCVFLPEPMGTAN----IQLHGPPRVKAVKSSEHINEGETAMLVC 105

Query: 77  NVYANPPA 84
              + PP 
Sbjct: 106 KSESVPPV 113

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 12/69 (17%), Positives = 25/69 (36%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           +L +    +  AG+Y+C+ +   G  +     V +                    A I+C
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122

Query: 77  NVYANPPAK 85
           +V ++ P  
Sbjct: 123 DVVSSLPPT 131

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 53.4 bits (128), Expect = 2e-09
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 11  LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHT 66
                    + +  +  +  Y C    N  ESTS    + V      PP++ +E   +  
Sbjct: 139 FFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVR 198

Query: 67  APDMRAEIICNVYANPP 83
                A+I+C+      
Sbjct: 199 IRGEAAQIVCSATNAEV 215

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 2/68 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEII 75
           +L     T K  G Y+C    +   + S    + V  P        Q +       A + 
Sbjct: 52  TLTTRNATFKNTGTYRCTELEDPM-AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLP 110

Query: 76  CNVYANPP 83
           C +     
Sbjct: 111 CLITDPAL 118

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
            ++ L  N   L +D +  + AG YQC  SN +    S +  +++I+ P 
Sbjct: 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 52.6 bits (126), Expect = 3e-09
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEII 75
            L       +  G+Y C   N +G+    +  + V+  P+   + + +          I 
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIP 330

Query: 76  CNVYANPPAK 85
           C V   P   
Sbjct: 331 CKVTGLPAPN 340

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 48.8 bits (116), Expect = 9e-08
 Identities = 13/67 (19%), Positives = 20/67 (29%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           SL   R      G YQC A    G ++S+       Y      +            ++ C
Sbjct: 63  SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC 122

Query: 77  NVYANPP 83
            +    P
Sbjct: 123 VLPNAYP 129

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 51.5 bits (123), Expect = 4e-09
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVIYPPEVSVEKQWIHTAPDMRAEII 75
            +    VT K  G Y C+ S   G++  +  I + V+ PP               RA + 
Sbjct: 66  GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLT 125

Query: 76  CNVY-ANPP 83
           C+ +  +PP
Sbjct: 126 CSEHDGSPP 134

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 52.5 bits (125), Expect = 4e-09
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
            ++L   +L+  G Y C+A +   +      +   V     P ++   +   T+     E
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIE 685

Query: 74  IICNVYANPPAK 85
           + C    NPP +
Sbjct: 686 VSCTASGNPPPQ 697

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEV---SVEKQWIHTAPDMRA 72
            L +  V+ +  G Y  I +N I +   S    + V  PP++   S+             
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 441

Query: 73  EIICNVYANPP 83
            + C VYA PP
Sbjct: 442 TLTCTVYAIPP 452

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
           N+    L      ++ LY+C A N +G    +    +V   PE++++   +         
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRG-ERVISFHVTRGPEITLQPD-MQPTEQESVS 568

Query: 74  IICNVYANPP 83
           + C    +  
Sbjct: 569 LWCTADRSTF 578

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE---KQWIHTAPDMRAE 73
           +L +D VT    GLY C AS+ +      +  V V   P V+     +  +      R  
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVR 349

Query: 74  IICNVYANPP 83
           I       PP
Sbjct: 350 IPAKYLGYPP 359

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 3/73 (4%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDM 70
           +++   +    +  AG+  C A  N     S  +IV V+       V      I  +   
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 240

Query: 71  RAEIICNVYANPP 83
           +  + C       
Sbjct: 241 KLVLNCTARTELN 253

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIH 65
           S I L     +L + RV  +  GLY C A + +G +  +     +    E  ++E+   H
Sbjct: 711 SGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE-AFFIIEGAQEKTNLERTHHH 769

Query: 66  T 66
            
Sbjct: 770 H 770

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ----WIHTAPDMRA 72
           +L + +V     G Y+C        S    ++ +   P   SV  Q    +I    +   
Sbjct: 87  TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146

Query: 73  EIICNVYANPP----AKRFDEGTRFDEGTVTAKVLQPFSERTLSVQ 114
            I C    +        R+ E     +G      +   S++  ++ 
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDG----NRISWDSKKGFTIP 188

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 52.1 bits (125), Expect = 5e-09
 Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 8   KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 67
           ++  + +   L++  ++++ +G Y C A N  G ++S +  + V  PP    +   + T 
Sbjct: 339 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETL 397

Query: 68  PDMRAEIICNVYANPPAK 85
                 + C +   PP +
Sbjct: 398 KGADVHLECELQGTPPFQ 415

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 8   KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 67
           K+ L+ N  +L + +VT   AG Y C ASN  G+ +     + V  PP    + +     
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIV 303

Query: 68  -PDMRAEIICNVYANPPAK 85
             D      C +  +P  K
Sbjct: 304 KQDEHTRYECKIGGSPEIK 322

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 7/114 (6%)

Query: 7   SKIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWI 64
            K +++      S+ +  V     G YQC ASN++G   +    + +  PP    +   I
Sbjct: 429 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDI 487

Query: 65  HTAPDMRAEIICNVYANPPAK---RFDEGTRFDEGTVTAKVLQPFSERTLSVQD 115
            T      ++   +    P       D        +    +    +  TL    
Sbjct: 488 STVVGEEVQLQATIEGAEPISVAWFKD-KGEIVRESDNIWISYSENIATLQFSR 540

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQW 63
            K++   N  SL +++V     G Y C A N++G   S + ++ +     PP  + + + 
Sbjct: 52  YKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVAS-SAVLVIKERKLPPSFARKLKD 110

Query: 64  IHTAPDMRAEIICNVYANPPAK 85
           +H          C +  + P +
Sbjct: 111 VHETLGFPVAFECRINGSEPLQ 132

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 8   KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWI 64
           +   ++N  +L + +      G Y C ASN +G ++S +  + +     PP   ++   +
Sbjct: 149 QTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASS-SAKLTLSEHEVPPFFDLKPVSV 207

Query: 65  HTAPDMRAEIICNVYANPP 83
             A        C+V    P
Sbjct: 208 DLALGESGTFKCHVTGTAP 226

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 52.4 bits (125), Expect = 5e-09
 Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 9/72 (12%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
           N  S+          G Y   A N+     +K F +N+   P+V  E           ++
Sbjct: 376 NGYSISKFCNHKHQPGEYIFHAENDDA-QFTKMFTLNIRRKPQVLAE--------ASASQ 426

Query: 74  IICNVYANPPAK 85
             C     P   
Sbjct: 427 ASCFSDGYPLPS 438

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 50.1 bits (119), Expect = 3e-08
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP 83
               +C A N +G   ++ F +++   P+ ++ +  +         I C       
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQ--LFLKVGEPLWIRCKAVHVNH 256

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 6/71 (8%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV--EKQWIHTAPDMRAEI 74
              +  V     G Y C +S +  +S      V ++    ++     +            
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQSAL----VTIVEKGFINATNSSEDYEIDQYEEFCF 346

Query: 75  ICNVYANPPAK 85
                A P  +
Sbjct: 347 SVRFKAYPQIR 357

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           S+ + ++T   AG Y     +    + +  F V++      ++ + +     + +  ++C
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEAT-NYTILFTVSIRNTLLYTLRRPYFRKMEN-QDALVC 161

Query: 77  NVYANPP 83
              + P 
Sbjct: 162 ISESVPE 168

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV---SVEKQWIH 65
           S  L+        L +C A N++G ++ +  ++N   P         K   H
Sbjct: 475 SSTLNMSEAIKGFLVKCCAYNSLG-TSCETILLNSPGPFPFIQDGGTKHHHH 525

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 12  LYNRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIYPPEVSVEKQWIHTA--P 68
           + +   L +  +     G Y+C        E   K+  V V  PP V   +  ++     
Sbjct: 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL 210

Query: 69  DMRAEIICNVYANPP 83
                ++C+    P 
Sbjct: 211 GQSVTLVCDADGFPE 225

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 12/67 (17%), Positives = 25/67 (37%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           +L +    +  AG+Y+C+ +   G  +     V +                    A I+C
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122

Query: 77  NVYANPP 83
           +V ++ P
Sbjct: 123 DVVSSLP 129

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 13/67 (19%), Positives = 21/67 (31%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
            L +  + L   G YQC+         S+   V +   P    E +    A +    + C
Sbjct: 69  QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSC 128

Query: 77  NVYANPP 83
                P 
Sbjct: 129 QAQGPPE 135

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIYPPE 56
              + C A N  G +TS+   + V+ P +
Sbjct: 168 TSSFSCEAHNAKGVTTSRTATITVL-PQQ 195

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 11/60 (18%), Positives = 16/60 (26%), Gaps = 2/60 (3%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK 85
              Y C  +    E  S  + V  +      VSV              ++C V  N    
Sbjct: 153 DRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVN 212

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP------EVSVEKQWIHTAPDM 70
            L L  +T    G Y C  +++ G  T +   + +  P           E+ +I      
Sbjct: 52  VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEIT 111

Query: 71  RAEIICNVYANPPAK 85
              I C V  +P   
Sbjct: 112 EITIPCRV-TDPQLV 125

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 8   KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 67
           ++  + +   L++  ++++ +G Y C A N  G ++S +  + V  PP    +   + T 
Sbjct: 147 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETL 205

Query: 68  PDMRAEIICNVYANPPAK 85
                 + C +   PP +
Sbjct: 206 KGADVHLECELQGTPPFQ 223

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 8   KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 67
           K+ L+ N  +L + +VT   AG Y C ASN  G+  S +  + V  PP    + +     
Sbjct: 53  KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKKLEPSRIV 111

Query: 68  -PDMRAEIICNVYANPP 83
             D      C +  +P 
Sbjct: 112 KQDEHTRYECKIGGSPE 128

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           SL +  + ++  G Y C+       S S +  + V+  P+ + E Q +    +      C
Sbjct: 80  SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARC 139

Query: 77  NV-YANPPAK 85
                 PPA+
Sbjct: 140 VSTGGRPPAQ 149

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 43.2 bits (101), Expect = 7e-06
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 28  AGLYQCIASNNIGEST-SKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEIICNVYANPPAK 85
                C   +   E        + V YPPEVS+     +       A + C+  +NP   
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT 248

Query: 86  RF 87
            +
Sbjct: 249 GY 250

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD------M 70
           +L + R+    +G+Y+C A N     T     V ++  P +  +  ++    +       
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237

Query: 71  RAEIICNVYANPP 83
            A + C V   PP
Sbjct: 238 DAVLECCVSGYPP 250

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           +L +  VT   +G Y C+ +     + S +  + V+ PP        ++    M  E  C
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNE-NISASAELTVLVPPWFLNHPSNLYAYESMDIEFEC 334

Query: 77  NVYANPP 83
            V   P 
Sbjct: 335 AVSGKPV 341

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 45.6 bits (108), Expect = 9e-07
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNI-GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 75
           ++   R      GLYQC AS    G   S+   V V  P     + + I         + 
Sbjct: 83  NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142

Query: 76  CNVYANPP 83
           C V  +P 
Sbjct: 143 CEVIGDPM 150

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 10  ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHT 66
            + ++   L ++ V  +  G+YQC   N+   + + +  + +     PP +    Q    
Sbjct: 383 AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEA-SAELKLGGRFDPPVIRQAFQEETM 441

Query: 67  APDMRAEIICNVYANPPAK 85
            P     + C    NP  +
Sbjct: 442 EPGPSVFLKCVAGGNPTPE 460

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 17  SLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEI 74
           +L ++ V        Y C+A N  G S   +  V V+  P +     +           +
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639

Query: 75  ICNVYANPPAKRF 87
            C+V         
Sbjct: 640 HCSVPGGDLPLNI 652

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 49.2 bits (117), Expect = 7e-08
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           +L +    ++ +G Y C+ +N++G  + +  ++ V  P    ++           A   C
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 365

Query: 77  NVYANPPAK 85
               NP   
Sbjct: 366 QYTGNPIKT 374

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 49.2 bits (117), Expect = 7e-08
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 6/101 (5%)

Query: 21  DRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-- 78
           D      A +Y C+A N  G   S++  V  +       +    H      A I C +  
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS 164

Query: 79  -YANPPAK---RFDEGTRFDEGTVTAKVLQPFSERTLSVQD 115
             A+         DE   +  G              L +++
Sbjct: 165 FVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIRE 205

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
            L ++ V    AG + C A N  G        +NV  PP   +E      A    A++ C
Sbjct: 678 VLTIEAVEASHAGNFTCHARNLAGHQQFT-TPLNVYVPPRWILEPTDKAFAQGSDAKVEC 736

Query: 77  NVYANPP 83
                P 
Sbjct: 737 KADGFPK 743

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 14/73 (19%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR----- 71
            L++  V     GLY+CIA + +G +   +  +NV   P       +I            
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEH-SAKLNVYGLP-------YIRQMEKKAIVAGE 542

Query: 72  -AEIICNVYANPP 83
              + C V   P 
Sbjct: 543 TLIVTCPVAGYPI 555

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
           +L +D +     G Y C A N IG   S   +++V    
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 18 LDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYPPEVSVE-KQWIHTAPDMRAEII 75
          +++    LK   L+  +A    G  T + N        P    E    I  +    AEI 
Sbjct: 1  MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 76 CNVYANPPAK 85
          C    NP  +
Sbjct: 61 CKASGNPMPE 70

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 12/67 (17%), Positives = 28/67 (41%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
            L +    ++ AG+Y+C A++  G++     ++ +                    AE++C
Sbjct: 61  RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 120

Query: 77  NVYANPP 83
            V ++P 
Sbjct: 121 RVSSSPA 127

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 45.6 bits (108), Expect = 9e-07
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIYPPEVS-VEKQWI 64
           ++  +L N  +L +  +     G+Y+C       GE   ++ IV V  PP +S  +K + 
Sbjct: 145 NRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFN 203

Query: 65  HTAPD-MRAEIICNVYANPP 83
            TA         C    +P 
Sbjct: 204 ATAERGEEMTFSCRASGSPE 223

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
            K  L  +   L +  +     G Y C A+N  GE       + V     
Sbjct: 239 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-QAFLQVFVQHH 287

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 4   IFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW 63
           +   K +     ++L +  V+ + +G Y C+ASN +G S      V V   P    E + 
Sbjct: 263 LPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG-SIRHTISVRVKAAPYWLDEPKN 321

Query: 64  IHTAPDMRAEIICNVYANPP 83
           +  AP     ++C    NP 
Sbjct: 322 LILAPGEDGRLVCRANGNPK 341

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 11/35 (31%), Positives = 13/35 (37%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
            G YQC A N  G + S    + V   P    E  
Sbjct: 89  EGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENL 123

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 17/136 (12%)

Query: 18  LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV------------SVEKQWIH 65
            ++   T + AG Y+C+     G   S    + V  PP               +  Q   
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNA 284

Query: 66  TAPDMRAEIIC-NVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQ----DKIGPG 120
            + +    I+   V     +  +++    D  +     L P +E  +SV      + G G
Sbjct: 285 NSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTG 344

Query: 121 PDSNLRPSAYMADAPP 136
                  +      P 
Sbjct: 345 SPGPALRTRTKCADPM 360

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 49.1 bits (117), Expect = 5e-08
 Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 1/67 (1%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
            L +  V  +  G Y+C A N  G  T +   + +   P+                   C
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQ-GRIIIHAQPDWLDVITDTEADIGSDLRWSC 316

Query: 77  NVYANPP 83
                P 
Sbjct: 317 VASGKPR 323

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ-WIHTAPDMRAEIICNVYANPP 83
           AG YQC+A+N  G   S+   +   +  E S E++  +           C+   + P
Sbjct: 74  AGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYP 130

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
              +++   + +G Y C+   +   +   N  + V   P+++  K+  +      A + C
Sbjct: 57  EYRINKPRAEDSGEYHCVY--HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYC 114

Query: 77  NVYANPP 83
                P 
Sbjct: 115 KSVGYPH 121

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           +L +    ++ +G Y C+ +N++G   S   ++ V  P    ++           A   C
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 329

Query: 77  NVYANPP 83
               NP 
Sbjct: 330 QYTGNPI 336

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 13/63 (20%), Positives = 21/63 (33%)

Query: 21  DRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA 80
           D      A +Y C+A N  G   S++  V  +       +    H      A I C + +
Sbjct: 70  DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS 129

Query: 81  NPP 83
              
Sbjct: 130 FVA 132

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
            L++     + AG Y+C+A N+ G        +     P        IH A +      C
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRG-KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWEC 317

Query: 77  NVYANPP 83
                P 
Sbjct: 318 KANGRPK 324

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ-WIHTAPDMRAEIICNVYANPP 83
           AG YQCIA+N+ G   S+   +   Y        +  +         ++C    +  
Sbjct: 75  AGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSG 131

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
           ++   +  V L+  G Y C   N+     SK   + +    
Sbjct: 48 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEIICNVYANPPAKR 86
                CI + ++     ++  +NV Y PEV++E    +     M  ++ C   ANPPA  
Sbjct: 206 QQSLACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATE 264

Query: 87  F 87
           +
Sbjct: 265 Y 265

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 45.5 bits (107), Expect = 9e-07
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
           NR       +   LAG Y C A+N IG + S    VN+     +     
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIG-TRSGQVEVNITEAAALEHHHH 329

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE--- 73
           ++ L R+ L+  G+Y C  +     +      + V+  P   +E            +   
Sbjct: 93  TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152

Query: 74  --IICNV-YANPPAK 85
               C      PP+ 
Sbjct: 153 LVATCTSANGKPPSV 167

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 17  SLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIYPPEVSVEKQWIHT--APDMRAE 73
           +L +  +     G+Y+C       GE   ++ IV V  PP +S+ ++  +          
Sbjct: 58  NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 117

Query: 74  IICNVYANPP 83
             C    +P 
Sbjct: 118 FSCRASGSPE 127

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 46.4 bits (109), Expect = 5e-07
 Identities = 8/55 (14%), Positives = 16/55 (29%)

Query: 29  GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP 83
             Y C  +   G+        ++  PP    E   + T      ++ C +     
Sbjct: 103 RRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKH 157

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 10/75 (13%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW---------IHTA 67
           +L +    L+ +G Y C    +       + +V+      V   +           I+  
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDV-RIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVT 241

Query: 68  PDMRAEIICNVYANP 82
               A I C   +  
Sbjct: 242 IGEPANITCTAVSTS 256

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 45.3 bits (107), Expect = 7e-07
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
             ++  Y   ++ +   T++ +G Y C       +  S+   + VI  P
Sbjct: 125 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 45.6 bits (108), Expect = 9e-07
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 8   KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 67
           +++  +   SL +  V L  +G Y C A++ IG    K+  +++ Y P+    +   ++ 
Sbjct: 55  EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSW 113

Query: 68  PDMRAEIICNVYANPPAK 85
                 I C+V +NPPA 
Sbjct: 114 EGNPINISCDVKSNPPAS 131

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 45.3 bits (107), Expect = 9e-07
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 15/85 (17%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-- 71
           N   L  + V +K AG Y C  +NN     S+   ++V   PE         +   ++  
Sbjct: 63  NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122

Query: 72  -------------AEIICNVYANPP 83
                          + C    +P 
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPI 147

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
            ++   +  V L+  G Y C   N+     SK   + +     + 
Sbjct: 163 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG 207

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 10/74 (13%), Positives = 18/74 (24%), Gaps = 4/74 (5%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPD 69
                  +          +C A  +     S  F + V       P VSV +        
Sbjct: 144 KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKG 203

Query: 70  MRAEIICNVYANPP 83
               ++C +     
Sbjct: 204 DTFTVVCTIKDVST 217

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 43.6 bits (102), Expect = 4e-06
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
            +     ++      G Y C  SN +  S      V V  P ++ +    +    D  A 
Sbjct: 55  KKNEWIQEKAEATRTGTYTCSNSNGLTSSIY----VFVRDPAKLFLVGLPLFGKEDSDAL 110

Query: 74  IICNVYANPPA 84
           + C +     +
Sbjct: 111 VRCPLTDPQVS 121

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
           N   L +    +   G Y C       E T +   ++V+ P  +SV  +           
Sbjct: 65  NTFFLVVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDFSVLT 123

Query: 74  IICNVYANPP 83
           + C V A P 
Sbjct: 124 VTCTVNAFPH 133

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 3/75 (4%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV---EKQWIHTAPDM 70
           +++   +    +  AG+  C A  N     S  +IV V+      V       I  +   
Sbjct: 62  SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 121

Query: 71  RAEIICNVYANPPAK 85
           +  + C         
Sbjct: 122 KLVLNCTARTELNVG 136

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
           +L +D VT    GLY C AS+ +  +   +  V V   P
Sbjct: 172 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEDP 209

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 9   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEKQW 63
           I+L + + SL ++ V     G Y C+  N  G    + + ++V+      P   +     
Sbjct: 65  IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPAN 123

Query: 64  IHTAPDMRAEIICNVYANPP 83
                    E  C VY++  
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQ 143

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 12  LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 60
           +     L L  V+ +  G Y C A+N IG    K F ++V  P     E
Sbjct: 178 VEADVRLRLANVSERDGGEYLCRATNFIG-VAEKAFWLSVHGPRAAEEE 225

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 60
             E L L  VT + AG Y C+A N+IG S   +  + V+   E  VE
Sbjct: 289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH-SAWLVVLPAEEELVE 334

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 9   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEKQW 63
           I+L + + SL ++ V     G Y C+  N  G S  + + ++V+      P   +     
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPAN 231

Query: 64  IHTAPDMRAEIICNVYANPP 83
                    E  C VY++  
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQ 251

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICN-VYANPPAK 85
            G Y C+A N +G++ S++  + +     +  VE +    A    A + C      P   
Sbjct: 81  GGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPT 140

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 11/46 (23%), Positives = 16/46 (34%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
           +L +  V     G Y+CIA N +G   S    + V           
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 66
            K +      +L +   + K AG+Y+ I  ++ G+  S+   +      E+ +E      
Sbjct: 52  EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKKIA 110

Query: 67  APDMRAEIIC 76
                 +I  
Sbjct: 111 LSATDLKIQS 120

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 11/98 (11%), Positives = 23/98 (23%), Gaps = 20/98 (20%)

Query: 8   KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTS--------------------KNF 47
           K  +   +  L ++  T    G Y     +                           +  
Sbjct: 156 KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAA 215

Query: 48  IVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK 85
           I        +      +         + CNV+ +PP +
Sbjct: 216 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
              ++ V+   +G Y  +  N  G  TS +F V+V + PE
Sbjct: 280 YFTINGVSTADSGKYGLVVKNKYGSETS-DFTVSV-FIPE 317

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 8   KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWI 64
           +I     R  L +  VT   +G Y   A+N  G++TS    + V     PP      Q +
Sbjct: 55  QISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST-AELLVKAETAPPNFVQRLQSM 113

Query: 65  HTAPDMRAEIICNVYANPP 83
                 +  +   V   P 
Sbjct: 114 TVRQGSQVRLQVRVTGIPT 132

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 42.1 bits (99), Expect = 5e-06
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 59
            G+Y C+A N +GE+ S +  + V        
Sbjct: 84  EGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-------DMRAEIICNVYA 80
              Y+C+A N +G++ S +  + +    +       I   P            + C    
Sbjct: 77  DAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG 136

Query: 81  NPP 83
           NP 
Sbjct: 137 NPT 139

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 4/72 (5%)

Query: 11  LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDM 70
            +       +  V     G Y C +S +  +S      V ++    ++          D 
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL----VTIVEKGFINATNSSEDYEIDQ 340

Query: 71  RAEIICNVYANP 82
             E   +V    
Sbjct: 341 YEEFCFSVRFKA 352

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 43.5 bits (102), Expect = 6e-06
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 31  YQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP 83
            +C A N +G   ++ F +++   P+ ++ +  +         I C       
Sbjct: 206 IRCCARNELGRECTRLFTIDLNQTPQTTLPQ--LFLKVGEPLWIRCKAVHVNH 256

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           S+ + ++T   AG Y     +     T   F V++      ++ + +     + +  ++C
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTI-LFTVSIRNTLLYTLRRPYFRKMEN-QDALVC 161

Query: 77  NVYANPP 83
              + P 
Sbjct: 162 ISESVPE 168

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
            + + L N  S+          G Y   A N+  +  +K F +N+    +
Sbjct: 369 CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQF-TKMFTLNIRSGTK 417

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 16  ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
              +   VT  L G Y C A +  G   ++   VNV+ P
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQG-EVTREVTVNVLSP 450

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 2   LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGEST---SKNFIVNVIYPP--E 56
           + +     + L  R  L L          + C A+  +       ++   + V+Y P  +
Sbjct: 313 VTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD 372

Query: 57  VSVEKQWIHTAPDMRAEIICNVYANPPAK 85
                       + +   +C  + NP  +
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPE 401

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE---KQWIHTAPDMRAE 73
           +L +     +  G+Y CIA+N +GE  + +  + +   P+       K+  + A      
Sbjct: 64  TLTVMTEEQEDEGVYTCIATNEVGEVET-SSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122

Query: 74  IICNVYANPPAK 85
           +       P   
Sbjct: 123 LHVMYIGRPVPA 134

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICNV-YANPPAK 85
            G+Y C+A N +GE+ S +  + V     +       +  A    A + C     +P   
Sbjct: 84  EGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPT 143

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
            L +       AG Y C+ +N +GE  S+   + V+  P 
Sbjct: 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 42.7 bits (100), Expect = 9e-06
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 16  ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
              +   VT  L G Y C A +  G   ++   VNV+ P
Sbjct: 228 PIGESVTVTRDLEGTYLCRARSTQG-EVTREVTVNVLSP 265

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-----QWIHTAPDMR 71
            L +  VT   A +YQ  A+N  G   S    + V  P ++ + K       +H      
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 72  AEIICNVYANPPAK 85
             I       P   
Sbjct: 122 VSIKIPFSGKPDPV 135

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-YPP 55
           +L+   VT++  G+Y C+ SN++G +T+ +  +NV     
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVG-NTTASATLNVTGTHH 436

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 9   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEKQW 63
            ++     SL ++ V     G Y C+  N  G S +  + ++V+      P   +     
Sbjct: 69  YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVVERSRHRPILQAGLPAN 127

Query: 64  IHTAPDMRAEIICNVYANPP 83
             T      E +C VY++  
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQ 147

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
           N E L L  VT   AG Y C  SN IG++   +  + V+   +    ++
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQ-SAWLTVLPKQQAPGREK 230

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 9/53 (16%), Positives = 19/53 (35%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 59
              +  ++     + + TLK +G Y C         +S+   + +     VS 
Sbjct: 128 KGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 39.5 bits (92), Expect = 9e-05
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
              S  +D  T+  +G Y+C    +   + S    + V     +    +W+    D    
Sbjct: 52  QASSYFIDAATVDDSGEYRCQTQLS---TLSDPVQLEVHIGWLLLQAPRWVFKEED-PIH 107

Query: 74  IICNVYANPPAKRF 87
           + C+ + N    + 
Sbjct: 108 LRCHSWKNTALHKV 121

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
           E +++       +GLY C+ S+  G  T+  F VNV
Sbjct: 59 GEEVEVRDSIPADSGLYACVTSSPSGSDTT-YFSVNV 94

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
            E +++       +GLY C+ S+  G  T+  F VNV     
Sbjct: 52 TGEEVEVQDSVPADSGLYACVTSSPSGSDTT-YFSVNVSDALP 93

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSK--NFIVNVIY-PPEVSVEKQWIHTAPDMRAE 73
           +L ++       G Y+C+A+N+ G   S   N  V V    P  S+        P     
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVN 224

Query: 74  IICNVYANPP 83
           I C    +P 
Sbjct: 225 ITCVAVGSPM 234

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
           +L+   V L   G+Y C+ +N  G +++ +  +NV
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAG-NSNASAYLNV 441

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 9/89 (10%)

Query: 4   IFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIY------P 54
           +    I     ++ L +  V  K  G Y C AS          ++      +       P
Sbjct: 150 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRP 209

Query: 55  PEVSVEKQWIHTAPDMRAEIICNVYANPP 83
             VS   + +      + ++ICNV     
Sbjct: 210 VIVSPANETMEVDLGSQIQLICNVTGQLS 238

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 3e-05
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
            L L++ T    G Y  +A+N  G   S + +   +  P
Sbjct: 310 CLRLNQPTHVNNGNYTLLAANPFG-QASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  SLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 75
            L L  VT  L      C A N++G +   +  VNV +P       Q           I 
Sbjct: 213 GLTLANVTSDLNRKNVTCWAENDVGRAE-VSVQVNVSFPA----SVQLHTAVEMHHWCIP 267

Query: 76  CNVYANPPAK 85
            +V   P   
Sbjct: 268 FSVDGQPAPS 277

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 17 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYP 54
           L L  +  +  G Y C+A+++      S+   +++I P
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 9/77 (11%), Positives = 19/77 (24%), Gaps = 1/77 (1%)

Query: 9   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIHTA 67
            +  +   +L + +  +   G Y C         S   +  V  ++P  V          
Sbjct: 124 FKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLL 183

Query: 68  PDMRAEIICNVYANPPA 84
                 + C        
Sbjct: 184 EGNLVTLSCETKLLLQR 200

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 6/74 (8%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
           +  S  +   ++  +G Y+C    +     S    + +     + ++             
Sbjct: 46  STPSYRITSASVNDSGEYRCQRGLS---GRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLA 101

Query: 74  IICNVYANPPAKRF 87
           + C+ + +      
Sbjct: 102 LRCHAWKDKLVYNV 115

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 5   FFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEK 61
           F  ++ L     +L + +V  +    Y        G        + V+ P   P + +EK
Sbjct: 62  FKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEK 121

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 6/43 (13%), Positives = 15/43 (34%)

Query: 9   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
            +  +   +  + +     +G Y C  +      +SK   + V
Sbjct: 127 QKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 4/78 (5%)

Query: 10  ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 69
            +  + +     +     +G Y C        S S    + V++   V           +
Sbjct: 45  LIPTHTQPSYRFKANNNDSGEYTCQTGQT---SLSDPVHLTVLFEWLVLQTPHLEFQEGE 101

Query: 70  MRAEIICNVYANPPAKRF 87
               + C+ + + P  + 
Sbjct: 102 T-IMLRCHSWKDKPLVKV 118

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 39.7 bits (92), Expect = 8e-05
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 6   FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 65
           F+  ++     S+++  + L   G YQC      G   +K F++ V+  P  +       
Sbjct: 74  FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPG-VANKKFLLTVLVKPSGTRCFVDGS 132

Query: 66  TAPDMRAEIICNVYANPP 83
                  ++ C       
Sbjct: 133 EEIGNDFKLKCEPKEGSL 150

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
            + +   + + +G Y C   N +G S      ++V+ P
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVG-SDQCMLRLDVVPP 213

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
           +L +++      G Y+C+A+N+ G   S    + V     
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 28  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMR------AEIICNVYA 80
             +Y+C+ASNN+GE  S +  + V+   ++      I   P          A ++C    
Sbjct: 76  EAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASG 134

Query: 81  NPP 83
           NP 
Sbjct: 135 NPD 137

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 10  ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
           + +   ++L + ++ L+ +G + C    N          + V+   + S
Sbjct: 137 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQKAS 184

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVI-----YPPEVS 58
            K   +     L +  V L+ AG Y+C+ +        + +++  + +        P + 
Sbjct: 171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII 230

Query: 59  VEKQWIHTAPDMRAEIICNVYAN 81
              + I  +   R  I C V+  
Sbjct: 231 SPLKTISASLGSRLTIPCKVFLG 253

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
           +L++    ++  G Y CIA+N  G + S    ++V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGG-NDSMPAHLHV 475

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 7   SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
           S I L     +L + RV  +  GLY C A + +G +  + F   +    E +
Sbjct: 55  SGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF-FIIEGAQEKT 105

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV 57
            L LD  T    G Y  IA N  G+   K    + +  P +
Sbjct: 63  CLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 69
            L   +V ++  G+Y C A       T  +  + V     +      ++ A D
Sbjct: 302 DLFFKKVQVEDGGVYTCYAMGETFNETL-SVELKVY-NFTLHGHHDTLNAAAD 352

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 1/71 (1%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
           +L ++ V+      Y C A+        K   V +   P+                 + C
Sbjct: 55  TLTMNPVSFGNEHSYLCTATCESR-KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKC 113

Query: 77  NVYANPPAKRF 87
           +V    P  R 
Sbjct: 114 SVADVYPFDRL 124

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 14  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
              S  +D  T+  +G Y+C  + +     S    + V     +    +W+    D    
Sbjct: 52  QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWVFKEED-PIH 107

Query: 74  IICNVYANPPAKRF 87
           + C+ + N    + 
Sbjct: 108 LRCHSWKNTALHKV 121

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 3   VIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYP---PEVS 58
                    L+   +L +  +      +Y+    +  G++   K F + +      P++S
Sbjct: 53  TFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKIS 112

Query: 59  VE 60
             
Sbjct: 113 WT 114

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
              ++ V+   +G Y  +  N  G  TS +F V+V  P
Sbjct: 175 YFTINGVSTADSGKYGLVVKNKYGSETS-DFTVSVFIP 211

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
           +L +D VT    GLY C AS+ +  +   +  V V   P V+    
Sbjct: 75  TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAFGSG 119

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 18/137 (13%), Positives = 34/137 (24%), Gaps = 17/137 (12%)

Query: 15  RESLDLDRVTLKLAGLYQCIASNNIG------ESTSKNFIVNVIYP--PEVSVEKQWIHT 66
             +L L  V  +  G Y C  +          ++ S    V    P         + +  
Sbjct: 89  APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQV 148

Query: 67  APDMRAEIICNVYANPPA--------KRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIG 118
                  + C       A          F+         +  K     +  +  +  +  
Sbjct: 149 DEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRAS 208

Query: 119 PGPDSNLR-PSAYMADA 134
                NL   +A + DA
Sbjct: 209 FSGARNLVIRAAKITDA 225

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVI--------YPPEVSVEKQWIHTA 67
           +L +  V     G Y C  S+     S    FI  +         YP ++ V+ + ++  
Sbjct: 67  NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126

Query: 68  PDMRAEIICNVYANPP 83
                 + C    NP 
Sbjct: 127 MGQNVTLECFALGNPV 142

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
            L L++ T    G Y  +A+N  G+  S + +   +  P   
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNPFEF 104

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
            L  ++ T    G Y  IA N +G   ++    + +  P
Sbjct: 66  CLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEP 103

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 35.9 bits (83), Expect = 7e-04
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 6   FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
               ++     SL ++ V     G Y C+  N  G S +  + ++V+
Sbjct: 55  IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVV 100

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 35.8 bits (82), Expect = 8e-04
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 10  ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
           EL+     L L  V     G YQC+ SN+ G S S    + +
Sbjct: 70  ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 35.8 bits (83), Expect = 9e-04
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
           SL ++ VT + AG+Y CIA+N  G+++  +  + V     
Sbjct: 67  SLIIEPVTSRDAGIYTCIATNRAGQNSF-SLELVVAAKES 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.83
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.83
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.82
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.81
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.8
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.8
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.8
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.79
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.79
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.79
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.79
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.78
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.78
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.78
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.78
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.78
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.78
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.77
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.77
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.77
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.77
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.77
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.77
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.76
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.76
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.76
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.76
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.76
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.75
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.75
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.75
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.75
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.75
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.74
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.73
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.73
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.73
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.73
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.73
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.73
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.73
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.73
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.72
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.72
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.72
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.72
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.72
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.72
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.72
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.71
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.71
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.71
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.71
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.71
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.71
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.71
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.71
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.71
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.71
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.7
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.7
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.7
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.7
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.69
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.69
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.69
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.69
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.68
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.68
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.67
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.66
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.66
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.66
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.66
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.66
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.66
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.65
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.65
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.65
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.65
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.65
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.64
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.64
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.64
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.64
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.63
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.62
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.62
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.62
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.62
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.62
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.62
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.61
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.61
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.61
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.61
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.61
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.61
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.61
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.61
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.6
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.6
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.6
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.6
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.6
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.59
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.59
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.59
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.58
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.58
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.57
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.57
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.57
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.57
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.57
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.56
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.55
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.55
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.55
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.55
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.55
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.54
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.54
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.54
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.54
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.54
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.53
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.53
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.53
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.53
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.53
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.53
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.53
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.53
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.53
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.52
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.52
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.52
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.52
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.52
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.52
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.52
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.51
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.51
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.51
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.51
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.5
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.5
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.5
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.5
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.49
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.49
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.49
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.49
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.49
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.48
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.48
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.48
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.47
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.47
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.47
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.47
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.47
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.47
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.47
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.46
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.46
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.45
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.45
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.45
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.45
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.45
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.45
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.44
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.44
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.43
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.43
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.43
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.41
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.4
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.4
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.39
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.39
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.38
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.38
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.38
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.38
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.37
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.35
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.34
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.34
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.33
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.32
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.31
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.31
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.29
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.28
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.28
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.28
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.28
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.27
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.27
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.27
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.26
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.26
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.25
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.25
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.25
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.23
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.22
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.22
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.21
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.2
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.2
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.19
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.18
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.17
1he7_A	126	High affinity nerve growth factor receptor; transf	99.16
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.14
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.13
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.13
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.12
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.12
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.12
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.11
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.11
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.08
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.08
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.08
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.07
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.07
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.07
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.07
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.07
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.07
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.06
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.06
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.03
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.03
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.03
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.02
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.02
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.01
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.01
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.01
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.01
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.01
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.0
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.0
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.0
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.99
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.99
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.98
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.98
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.98
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.98
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.97
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.96
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.95
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.94
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.94
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.94
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.94
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.93
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.93
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.93
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.93
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.93
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.93
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.93
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.92
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.92
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.92
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.92
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.91
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.91
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.91
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.91
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.9
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.9
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.89
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.89
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.89
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.88
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.88
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	98.88
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.88
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.88
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.87
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.87
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.87
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.87
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.87
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.87
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.85
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.85
2ens_A	96	Advanced glycosylation END product-specific recept	98.85
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.85
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.84
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.83
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.83
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.83
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.83
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.83
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.82
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.82
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.82
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.82
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.82
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.82
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.82
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.82
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.81
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.81
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.8
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.8
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.8
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	98.8
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.79
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.78
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.77
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.77
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.77
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.76
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.76
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.75
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.75
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.75
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.75
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.75
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.74
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.74
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	98.74
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.73
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.72
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.72
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.71
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.71
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.71
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.7
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.7
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.69
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.69
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.69
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.69
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.68
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.67
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.67
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.66
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.66
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.65
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.65
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.64
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.64
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.62
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.62
2ens_A	96	Advanced glycosylation END product-specific recept	98.61
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.61
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.61
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.61
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.6
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.6
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.59
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.59
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.59
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.58
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.58
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.58
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.58
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.58
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	98.58
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.57
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.55
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.55
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.54
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.54
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.54
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.53
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.53
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.53
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.52
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.52
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.52
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.51
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.51
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.5
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	98.5
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.5
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.49
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.49
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.48
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.48
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	98.48
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.47
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.47
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.45
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.44
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.44
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.44
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.44
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.43
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.43
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.43
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.43
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.42
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.41
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.41
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.41
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.41
1he7_A	126	High affinity nerve growth factor receptor; transf	98.4
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.39
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.37
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.37
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.37
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.37
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.37
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.36
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.34
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.34
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.34
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.34
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.33
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.33
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.33
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.32
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.32
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.31
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.31
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.3
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	98.29
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.28
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.28
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.28
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.26
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.26
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.24
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.23
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.22
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.22
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.22
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.2
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.2
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.2
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.19
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.19
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	98.18
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.17
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.17
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.16
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.15
1xiw_B	79	T-cell surface glycoprotein CD3 delta chain; CD3-e	98.15
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.15
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.14
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.14
3khq_A	133	B-cell antigen receptor complex-associated protei	98.14
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.11
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.11
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.1
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.09
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	98.09
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.08
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.08
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.06
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.06
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.04
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.03
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.01
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.01
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.01
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.0
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.0
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.98
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	97.98
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.97
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	97.97
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	97.96
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	97.95
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.94
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	97.94
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	97.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.93
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	97.92
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	97.91
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	97.89
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	97.87
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	97.87
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	97.87
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	97.87
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	97.86
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	97.86
3sob_L	237	Antibody light chain; beta propeller, protein bind	97.85
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	97.83
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	97.83
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	97.82

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.83  E-value=1.8e-19  Score=117.27  Aligned_cols=131  Identities=16%  Similarity=0.194  Sum_probs=104.3

Q ss_pred             eEEEECCEEeeec-----------CCeEEEccc-CCCCCEEEEEEEEcCCCCceeeeEEEEEecC-------CeEEecCc
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRV-TLKLAGLYQCIASNNIGESTSKNFIVNVIYP-------PEVSVEKQ   62 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v-~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~-------p~~~~~~~   62 (139)
                      +.|++++..+...           ...|.|.++ +.+|+|.|+|.+.|..+. .+..+.|.|...       |.+...+.
T Consensus        38 v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~p~~~~~~~  116 (212)
T 2yd6_A           38 IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQ  116 (212)
T ss_dssp             EEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEE-EEEEEEEEEECGGGCCTTCCEEEECCC
T ss_pred             EEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCc-EEEEEEEEEeccCccCCCcceeecCCc
Confidence            7899999876431           256999999 599999999999998877 577888888764       56666666


Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------------ecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      ...+..|+.+.|.|.+.+.|.+.+.|  ++..+               ....|.|..+..+|.|.|  .|.|.+|....+
T Consensus       117 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~  196 (212)
T 2yd6_A          117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSA  196 (212)
T ss_dssp             CEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             ceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccc
Confidence            66778899999999999999999988  33321               126789999999999999  889999998888


Q ss_pred             CCcceeeeeC
Q psy12134        124 NLRPSAYMAD  133 (139)
Q Consensus       124 ~~~~~~~~~~  133 (139)
                      ......++++
T Consensus       197 ~a~l~~~~~~  206 (212)
T 2yd6_A          197 PANLYVRGTK  206 (212)
T ss_dssp             CEEEEEEC--
T ss_pred             cccEEEEecc
Confidence            7777776654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.83  E-value=3.3e-20  Score=120.77  Aligned_cols=106  Identities=15%  Similarity=0.082  Sum_probs=87.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcCe---e
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGT---R   92 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~~---~   92 (139)
                      ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.+...+....+.+|+++.|.|.+.|.|.|.+.|...   .
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~  147 (203)
T 4fa8_A           69 FFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE  147 (203)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC----
T ss_pred             EEEEEccCCHHHCeEEEEEEEcCCCc-EEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeee
Confidence            46999999999999999999998877 5788999999888887777777788999999999999999999999221   1


Q ss_pred             ------------eecceE---EEEecCCCCceeE--EEEcccCCCCC
Q psy12134         93 ------------FDEGTV---TAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        93 ------------~~~~~l---~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                                  ..++.|   .+..+..+|.|.|  .|.|.+|..+.
T Consensus       148 ~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          148 PAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             --------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             cCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence                        123333   4468899999999  89999998763

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.82  E-value=4.7e-19  Score=113.71  Aligned_cols=118  Identities=14%  Similarity=0.120  Sum_probs=96.4

Q ss_pred             eEEEECCEEeeec-------------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCc
Q psy12134          2 LVIFFSKIELLYN-------------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ   62 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~   62 (139)
                      +.|+|++..+...                   .+.|.|.+++..|+|.|+|.+.|..+...+..+.|.|..+|.+...+.
T Consensus        35 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~  114 (195)
T 2c5d_C           35 VHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPE  114 (195)
T ss_dssp             CEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCC
T ss_pred             EEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCC
Confidence            7899999876433                   257999999999999999999998766555669999999998887776


Q ss_pred             eEeeCCCCeEEEEEEeeeCCCc-EEEE--cCeee-------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPA-KRFD--EGTRF-------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~-~~~~--~~~~~-------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ...+..|+.+.|.|.+.+.|.+ .+.|  ++..+       ....|.|..+.  |.|.|  .|.|.+|...
T Consensus       115 ~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~  183 (195)
T 2c5d_C          115 DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTT  183 (195)
T ss_dssp             CEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSCCEEEEECCCS--SCEEEEEEEEETTEEEE
T ss_pred             cEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCCCCeEEEcccc--cCceEEEEEEcCCCceE
Confidence            6788899999999999999998 8888  33332       34578888877  78999  7889888664

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.81  E-value=1.2e-18  Score=110.52  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=97.0

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCC
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD   69 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g   69 (139)
                      +.|+|++..+...            ...|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.+...+....+..|
T Consensus        34 v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g  113 (182)
T 1rhf_A           34 IQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPN  113 (182)
T ss_dssp             EEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTT
T ss_pred             EEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCC
Confidence            7899999876432            2579999999999999999999987765678899999999998877777788899


Q ss_pred             CeEEEEEEeeeCCCc-EEEE--cCeee-----ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         70 MRAEIICNVYANPPA-KRFD--EGTRF-----DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        70 ~~~~l~C~~~~~p~~-~~~~--~~~~~-----~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.+.|.|.+.+.|.+ .+.|  ++...     ....|.|..+  +|.|.|  .+.|.+|...
T Consensus       114 ~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~  173 (182)
T 1rhf_A          114 APFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--TQSTMFSCEAHNLKGLAS  173 (182)
T ss_dssp             CCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCC--SSCEEEEEEEEETTEEEE
T ss_pred             CEEEEEeEecCCCCCCEEEEEcCCeECCCCCCCceEEEEecc--ccCeEEEEEEECCCCCcc
Confidence            999999999999988 8888  44432     3456777777  588999  8889988664

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.80  E-value=5.1e-18  Score=108.50  Aligned_cols=118  Identities=14%  Similarity=0.149  Sum_probs=97.8

Q ss_pred             eEEEECCEEeeec-----CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEE
Q psy12134          2 LVIFFSKIELLYN-----RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC   76 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C   76 (139)
                      +.|+|++..+...     ...|.|.+++.+|+|.|+|.+.|. +. .+..+.|.|..+|.+...+....+..|+.+.|.|
T Consensus        37 v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C  114 (190)
T 2wv3_A           37 SYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV-SA-PKANATIEVKAAPDITGHKRSENKNEGQDAMMYC  114 (190)
T ss_dssp             EEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET-TE-EEEEEEEEEECCCEEEEECSEEEEETTSCEEEEE
T ss_pred             EEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC-Cc-ccccEEEEEecCCcccccCCcceeeCCCcEEEEE
Confidence            6899999887543     367999999999999999999998 55 6889999999999988777777788999999999


Q ss_pred             EeeeCCCcEEEEcC----eeee---------------cceEEEEecC-CCCceeE--EEEcccCCCC
Q psy12134         77 NVYANPPAKRFDEG----TRFD---------------EGTVTAKVLQ-PFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        77 ~~~~~p~~~~~~~~----~~~~---------------~~~l~i~~~~-~~d~g~y--~~~n~~g~~~  121 (139)
                      .+.+.|.+.+.|..    ....               ...|.|..+. .+|.|.|  .+.|.+|...
T Consensus       115 ~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~  181 (190)
T 2wv3_A          115 KSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSAS  181 (190)
T ss_dssp             EEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEE
T ss_pred             EeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcce
Confidence            99999999988832    2210               1268999999 7999999  7888888644

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.80  E-value=2.2e-18  Score=112.66  Aligned_cols=121  Identities=17%  Similarity=0.129  Sum_probs=99.8

Q ss_pred             eEEEECCEEeee-cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC---------------CeEEecCceEe
Q psy12134          2 LVIFFSKIELLY-NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---------------PEVSVEKQWIH   65 (139)
Q Consensus         2 ~~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~---------------p~~~~~~~~~~   65 (139)
                      +.|++++..+.. ....|.|.+++..|+|.|+|.+.|..+...+..+.|.|...               |.+...+....
T Consensus        50 v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  129 (218)
T 3k0w_A           50 YQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQK  129 (218)
T ss_dssp             EEEEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEE
T ss_pred             EEEEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCcee
Confidence            789999988754 45789999999999999999999988765577788888765               56666666677


Q ss_pred             eCCCCeEEEEEEeeeCCCcEEEE--cCeee---ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         66 TAPDMRAEIICNVYANPPAKRFD--EGTRF---DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +..|+.+.|.|.+.+.|++.+.|  ++..+   ....|.|..+..+|.|.|  .+.|..|....
T Consensus       130 v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s  193 (218)
T 3k0w_A          130 LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS  193 (218)
T ss_dssp             ECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEEC
T ss_pred             ecCCCcEEEEEEecccCCCeEEEEECCEECCCCCCCEEEEeecChhcCEEEEEEEEcCCCCcee
Confidence            88999999999999999999988  44432   345799999999999999  78887776443

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.80  E-value=1.1e-18  Score=111.44  Aligned_cols=121  Identities=17%  Similarity=0.244  Sum_probs=99.8

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeE
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA   72 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~   72 (139)
                      +.|++++..+..         .+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.+...+....+..|+.+
T Consensus        39 i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~  118 (192)
T 2iep_A           39 ISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKA  118 (192)
T ss_dssp             EEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCE
T ss_pred             EEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcE
Confidence            789999987643         23569999999999999999999988775677888999998988877666777899999


Q ss_pred             EEEEEeeeCCCcEEEE--cCeee---------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         73 EIICNVYANPPAKRFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        73 ~l~C~~~~~p~~~~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      .|.|.+.+.|.+.+.|  ++..+         ..+.|.|..+..+|.|.|  .+.|..|....
T Consensus       119 ~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s  181 (192)
T 2iep_A          119 VLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYS  181 (192)
T ss_dssp             EECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEE
Confidence            9999999999998888  33321         345799999999999999  78888887643

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.79  E-value=3.9e-18  Score=110.88  Aligned_cols=122  Identities=13%  Similarity=0.224  Sum_probs=99.8

Q ss_pred             eEEEECCEEeeec----------C--CeEEEcccCC-CCCEEEEEEEEcCCCCceeeeEEEEEecC-------CeEEecC
Q psy12134          2 LVIFFSKIELLYN----------R--ESLDLDRVTL-KLAGLYQCIASNNIGESTSKNFIVNVIYP-------PEVSVEK   61 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~--~~L~i~~v~~-~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~-------p~~~~~~   61 (139)
                      +.|++++..+...          +  ..|.|.+++. +|+|.|+|.+.|..+...+..+.|.|...       |.+...+
T Consensus        38 v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~  117 (212)
T 2yd1_A           38 IVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP  117 (212)
T ss_dssp             EEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECC
T ss_pred             EEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCC
Confidence            7899999887421          1  4799999999 99999999999988875678888999875       6677666


Q ss_pred             ceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         62 QWIHTAPDMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      ....+..|+.+.|.|.+.+.|.+.+.|  ++..         ...+.|.|..+..+|.|.|  .|.|.+|.....
T Consensus       118 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~  192 (212)
T 2yd1_A          118 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSK  192 (212)
T ss_dssp             CCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEE
Confidence            666778899999999999999998888  3332         2345899999999999999  889998877543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.79  E-value=3.2e-18  Score=111.26  Aligned_cols=113  Identities=12%  Similarity=0.017  Sum_probs=92.0

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeC
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN   81 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~   81 (139)
                      +.|+|++..+......|.|.+++.+|+|.|+|.+.|..   .+..+.|.|.++|.+...+. ..+.+|+++.|.|.+.+.
T Consensus        40 v~W~k~g~~l~~~~~~L~i~~v~~~D~G~Y~C~a~n~~---~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~  115 (204)
T 3sgj_C           40 TQWFHNESLISSQASSYFIDAATVDDSGEYRCQTQLST---LSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKN  115 (204)
T ss_dssp             EEEEETTEEESCCSSEEEESSCCGGGCEEEEEEETTSB---CCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGG
T ss_pred             EEEEECCEEcccCccEEEEecccccCCEEEEEEeCCCc---ccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCC
Confidence            78999999988888999999999999999999998742   46788999998887765554 456789999999999776


Q ss_pred             C-CcEEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         82 P-PAKRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        82 p-~~~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      + .+.+.|  ++...    ....|.|..+..+|.|.|  .+.|..+
T Consensus       116 ~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  161 (204)
T 3sgj_C          116 TALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSK  161 (204)
T ss_dssp             CCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCceEEEEECCcEeecccCCceEEECcCCcccCEEEEEEEEeCCC
Confidence            4 466777  55432    356899999999999999  6777433

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.79  E-value=2.4e-18  Score=109.84  Aligned_cols=118  Identities=14%  Similarity=0.186  Sum_probs=97.2

Q ss_pred             eEEEE-CCEEeee------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCC
Q psy12134          2 LVIFF-SKIELLY------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP   68 (139)
Q Consensus         2 ~~W~~-~~~~~~~------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~   68 (139)
                      +.|++ ++..+..            ....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.+...+....+..
T Consensus        35 v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~  114 (191)
T 1epf_A           35 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE  114 (191)
T ss_dssp             EEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCT
T ss_pred             EEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecC
Confidence            78999 7766642            2367999999999999999999998855568889999999998887777778889


Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |+.+.|.|.+.+.|++.+.|  ++...           ..+.|.|..+..+|.|.|  .|.|..|.
T Consensus       115 g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  180 (191)
T 1epf_A          115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG  180 (191)
T ss_dssp             TSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             CCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecce
Confidence            99999999999999999988  33321           234799999999999999  77887643

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.79  E-value=2.3e-18  Score=109.14  Aligned_cols=131  Identities=11%  Similarity=0.018  Sum_probs=97.7

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEee-e
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVY-A   80 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~   80 (139)
                      +.|++++..+......|.|.+++.+|+|.|+|.+.|..+   +..+.|.|..++.+...+. ..+.+|+.+.|.|.+. +
T Consensus        37 i~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~---s~~~~l~V~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~  112 (176)
T 1f2q_A           37 TKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNE---SEPVYLEVFSDWLLLQASA-EVVMEGQPLFLRCHGWRN  112 (176)
T ss_dssp             CEEEETTEECSCCSSEEEECSCCGGGCEEEEEECTTSSC---CCCEEEEEECSSEEEEESC-SEEETTSCEEEEEEEGGG
T ss_pred             EEEEECCeECCCCceEEEEeccceecCEEEEEEcCCccc---cccEEEEEeCcceeecCCc-ceeeCCCCEEEEEEecCC
Confidence            689999999888889999999999999999999987543   5677888886665543333 3566899999999995 4


Q ss_pred             CCCcEEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccCCCCCCCCcceeeeeCCCCCC
Q psy12134         81 NPPAKRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLRPSAYMADAPPTK  138 (139)
Q Consensus        81 ~p~~~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~~~~~~~~~~~~  138 (139)
                      .|.+.+.|  ++..+    ....|.|..+..+|.|.|  .+.|..|.  .......+.+..+|..|
T Consensus       113 ~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~~~p~~K  176 (176)
T 1f2q_A          113 WDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLD--YESEPLNITVIKAPREK  176 (176)
T ss_dssp             CCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEE--EECCCEEEEEECSCC--
T ss_pred             CCceEEEEEECCEEEeeecCCCeEEECCCCcccCEEEEEEEEeCCcc--eEecCEEEEEecCCCCC
Confidence            55567777  55443    356899999999999999  66775332  22344566666677654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.78  E-value=3.4e-18  Score=109.36  Aligned_cols=119  Identities=18%  Similarity=0.186  Sum_probs=94.4

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe---cCCeEEecCceEee
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWIHT   66 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~---~~p~~~~~~~~~~~   66 (139)
                      +.|++++..+...            ...|.|.+++..|+|.|+|.+.|..+. ....+.|.|.   .+|.+...+....+
T Consensus        37 v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~v~~~~~~p~~~~~~~~~~~  115 (194)
T 2a38_A           37 VSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQ-ATSTAELLVKAETAPPNFVQRLQSMTV  115 (194)
T ss_dssp             EEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCEEEEEEECCCCEEE
T ss_pred             EEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCce-EeEEEEEEEccCCCCCEEEeCCccEEE
Confidence            7899998765432            247999999999999999999998876 4667778887   56666666666778


Q ss_pred             CCCCeEEEEEEeeeCCCcEEEE--cCeee---------ec---ceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         67 APDMRAEIICNVYANPPAKRFD--EGTRF---------DE---GTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~~---~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..|+.+.|.|.+.+.|++.+.|  ++..+         ..   ..|.|..+..+|.|.|  .+.|..|...
T Consensus       116 ~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  186 (194)
T 2a38_A          116 RQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRAT  186 (194)
T ss_dssp             CTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEE
T ss_pred             cCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceE
Confidence            8999999999999999998888  43321         11   1689999999999999  7889888644

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.78  E-value=3.9e-18  Score=119.68  Aligned_cols=120  Identities=14%  Similarity=0.189  Sum_probs=100.6

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCce-EeeCC
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW-IHTAP   68 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~-~~~~~   68 (139)
                      +.|++++..+...            ...|.|.+++.+|+|.|+|.+.|..|...+..+.|.|..+|.+...+.. ..+..
T Consensus       244 i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~  323 (395)
T 1bih_A          244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQ  323 (395)
T ss_dssp             CEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECT
T ss_pred             EEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecC
Confidence            7899999876432            2379999999999999999999999886556899999999988866655 67789


Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee-------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF-------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~-------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      |+.+.|.|.+.+.|.+.+.|  ++..+       ..+.|.|..+..+|.|.|  .|.|.+|...
T Consensus       324 g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  387 (395)
T 1bih_A          324 GQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKY  387 (395)
T ss_dssp             TSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             CCeEEEEEEECcccCCeeEEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCce
Confidence            99999999999999998888  44432       345899999999999999  8899988754

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.78  E-value=3.9e-18  Score=119.93  Aligned_cols=120  Identities=20%  Similarity=0.245  Sum_probs=102.3

Q ss_pred             eEEEECCEEeeec-------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEE
Q psy12134          2 LVIFFSKIELLYN-------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI   74 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l   74 (139)
                      +.|++++..+...       .+.|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.+...+....+..|+.+.|
T Consensus       254 v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l  332 (404)
T 3p3y_A          254 IAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAPGEDGRL  332 (404)
T ss_dssp             EEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEEEECCCCEEECTTCCEEE
T ss_pred             EEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCc-EEEEEEEEEeCCCeeeccCCcceeecCCcEEE
Confidence            7899999876432       478999999999999999999999887 68899999999998887777778889999999


Q ss_pred             EEEeeeCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         75 ICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        75 ~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      .|.+.+.|++.+.|  ++..+           ..+.|.|..+..+|.|.|  .|.|.+|....
T Consensus       333 ~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  395 (404)
T 3p3y_A          333 VCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLA  395 (404)
T ss_dssp             ECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEE
T ss_pred             EEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEE
Confidence            99999999999988  33332           345799999999999999  88999887653

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.78  E-value=2.3e-18  Score=121.18  Aligned_cols=121  Identities=17%  Similarity=0.174  Sum_probs=100.5

Q ss_pred             eEEEECCE-Eee------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEE
Q psy12134          2 LVIFFSKI-ELL------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI   74 (139)
Q Consensus         2 ~~W~~~~~-~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l   74 (139)
                      +.|+|+++ .+.      ...+.|.|.+++.+|+|.|+|.|.|..|. ......|.|..+|.+...+....+..|+.+.|
T Consensus       237 i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l  315 (384)
T 3kld_A          237 ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFW  315 (384)
T ss_dssp             EEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEEECTTCCEEE
T ss_pred             EEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEEEEecCCccccCCCceEecCCCCEEE
Confidence            68999554 332      12468999999999999999999999987 57788999999998877677778889999999


Q ss_pred             EEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         75 ICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        75 ~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      .|.+.+.|.|.+.|  ++..        ...+.|.|..+..+|.|.|  .|.|.+|....+
T Consensus       316 ~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~  376 (384)
T 3kld_A          316 ECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSS  376 (384)
T ss_dssp             ECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEec
Confidence            99999999999988  4433        2456899999999999999  899999876543

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.78  E-value=8.1e-18  Score=106.54  Aligned_cols=114  Identities=11%  Similarity=0.030  Sum_probs=91.5

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeC
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN   81 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~   81 (139)
                      +.|+|++..+......|.|.+++.+|+|.|+|.+.|..   .+..+.|.|..++.+...+. ..+.+|+.+.|.|.+.+.
T Consensus        40 ~~W~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~---~s~~~~l~V~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~  115 (175)
T 1fnl_A           40 TQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLST---LSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKN  115 (175)
T ss_dssp             CEEEETTEEEESSCSEEEESSCCGGGCEEEEEECSSSC---CCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEECTT
T ss_pred             eEEEECCEEccCCceEEEEeCCCcccCEEEEEEeeCCc---ccccEEEEEeCCCceeeCCC-ceecCCCCEEEEEEcCCC
Confidence            67999999998888999999999999999999998854   35778888887665544333 456789999999999987


Q ss_pred             CCc-EEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         82 PPA-KRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        82 p~~-~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |++ .+.|  ++...    ....|.|..+..+|.|.|  .|.|..|.
T Consensus       116 ~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~  162 (175)
T 1fnl_A          116 TALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKN  162 (175)
T ss_dssp             CCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEEEEEcCCCC
Confidence            765 7777  44432    456899999999999999  67776554

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.77  E-value=7.5e-18  Score=113.62  Aligned_cols=119  Identities=14%  Similarity=0.233  Sum_probs=99.1

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCe
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR   71 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~   71 (139)
                      +.|++++..+...          ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.+...+....+..|+.
T Consensus       131 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~  209 (284)
T 2rik_A          131 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGAD  209 (284)
T ss_dssp             EEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCBCCSCCCCEEECTTCC
T ss_pred             EEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCc-eeEEEEEEEecCCcceeCCCcceecCCCe
Confidence            7899999876432          257999999999999999999999887 57889999999998876666677889999


Q ss_pred             EEEEEEeeeCCCcEEEE--cCeeee------------cceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRFD------------EGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~~------------~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.|.|.+.+.|++.+.|  ++..+.            ...|.|..+..+|.|.|  .|.|.+|+..
T Consensus       210 v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  275 (284)
T 2rik_A          210 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYT  275 (284)
T ss_dssp             EEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCcee
Confidence            99999999999999988  443321            13688999999999999  8899988754

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.77  E-value=5.7e-18  Score=118.73  Aligned_cols=119  Identities=18%  Similarity=0.251  Sum_probs=98.1

Q ss_pred             eEEEEC--CEEeee---------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceE
Q psy12134          2 LVIFFS--KIELLY---------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWI   64 (139)
Q Consensus         2 ~~W~~~--~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~   64 (139)
                      +.|+|+  +..+..               ..+.|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.+...+...
T Consensus        32 v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~P~~~~~~~~~  110 (389)
T 2jll_A           32 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDIEYAPKFISNQTIY  110 (389)
T ss_dssp             EEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEECCSCCEE
T ss_pred             EEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCC-cceEEEEEEEeCCEEecCcceE
Confidence            789999  766532               1257999999999999999999999988 5889999999999887666655


Q ss_pred             eeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         65 HTAPDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .+..|+.+.|.|.+.+.|++.+.|  ++..+              ....|.|..+...|.|.|  .|.|..|...
T Consensus       111 ~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  185 (389)
T 2jll_A          111 YSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRF  185 (389)
T ss_dssp             EECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEE
T ss_pred             EeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEE
Confidence            778999999999999999999988  33321              123589999999999999  8889988754

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.77  E-value=4.4e-18  Score=119.30  Aligned_cols=120  Identities=13%  Similarity=0.168  Sum_probs=100.1

Q ss_pred             eEEEECCEE------e------eecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCC
Q psy12134          2 LVIFFSKIE------L------LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD   69 (139)
Q Consensus         2 ~~W~~~~~~------~------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g   69 (139)
                      +.|+|++..      +      ....+.|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.+...+....+..|
T Consensus       244 v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~v~~g  322 (388)
T 2v5m_A          244 FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFG  322 (388)
T ss_dssp             EEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEEEEESSEEEECTT
T ss_pred             EEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCc-eeEEEEEEEeCCCccccCCCcEEecCC
Confidence            789997421      1      123578999999999999999999999987 588899999999888777777788999


Q ss_pred             CeEEEEEEeeeCCCcEEEE--cCeee--ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         70 MRAEIICNVYANPPAKRFD--EGTRF--DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        70 ~~~~l~C~~~~~p~~~~~~--~~~~~--~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.+.|.|.+.+.|++.+.|  ++..+  ....|.|..+..+|.|.|  .|.|.+|+...
T Consensus       323 ~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  381 (388)
T 2v5m_A          323 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEA  381 (388)
T ss_dssp             SCEEEEEEEEEECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCEEEEEEeccccCCeEEEEECCEECccCCCEEEEecCChhhCEEEEEEEEcCCCcEEE
Confidence            9999999999999999988  55443  346899999999999999  88999887553

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.77  E-value=1.2e-17  Score=108.89  Aligned_cols=117  Identities=11%  Similarity=0.127  Sum_probs=87.7

Q ss_pred             eEEEECCEEeeec--------C----CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe-----------------
Q psy12134          2 LVIFFSKIELLYN--------R----ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----------------   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~----~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~-----------------   52 (139)
                      ++|+|+|.++...        .    ..|.|.+++.+|+|.|+|.+.|  |. ......+.+.                 
T Consensus        35 i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~-a~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (207)
T 3rbs_A           35 VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GK-ATNHSTVVLVGDVFKKLQKEAEFQRQE  111 (207)
T ss_dssp             EEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TT-EEEEEEEEECTHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CC-eEEEEEEEEEccchhhhcccccccccc
Confidence            7899999987432        1    2599999999999999999999  44 2333443221                 


Q ss_pred             ----cCCeEEecCceEeeCCCCeEEEEEEeeeC-CCcEEEE--cCeee----------ecceEEEEecCCCCceeE--EE
Q psy12134         53 ----YPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPAKRFD--EGTRF----------DEGTVTAKVLQPFSERTL--SV  113 (139)
Q Consensus        53 ----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~--~~~~~----------~~~~l~i~~~~~~d~g~y--~~  113 (139)
                          .+|.+.... ...+.+|+.+.|.|.+.+. |.|.+.|  ++..+          ....|.|.++..+|.|.|  .|
T Consensus       112 ~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  190 (207)
T 3rbs_A          112 WIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL  190 (207)
T ss_dssp             HHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEE
T ss_pred             cccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEE
Confidence                256665443 3567889999999999998 8899988  44432          123599999999999999  88


Q ss_pred             EcccCCCCC
Q psy12134        114 QDKIGPGPD  122 (139)
Q Consensus       114 ~n~~g~~~~  122 (139)
                      .|.+|....
T Consensus       191 ~N~~G~~~~  199 (207)
T 3rbs_A          191 KDDRGKDKS  199 (207)
T ss_dssp             EETTEEEEE
T ss_pred             EcCCCEEEE
Confidence            999987653

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.77  E-value=6e-18  Score=108.90  Aligned_cols=116  Identities=11%  Similarity=0.130  Sum_probs=88.8

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEec---CCeEEecCceEeeCC
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIY---PPEVSVEKQWIHTAP   68 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~~---~p~~~~~~~~~~~~~   68 (139)
                      +.|+|++..+..         ....|.|.+++.+|+|.|+|.+.|..+ ...+..+.|.|..   +|.+...+.. .+.+
T Consensus        35 ~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~  113 (196)
T 3p2t_A           35 YRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTS  113 (196)
T ss_dssp             EEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECT
T ss_pred             EEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcc-eecC
Confidence            689999876542         247899999999999999999999887 3357778888864   4566655543 5678


Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCee-------------eecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTR-------------FDEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~-------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |+.+.|.|.+.+.+ +.+.|  ++..             .....|.|..+..+|.|.|  .|.|..+.
T Consensus       114 G~~v~L~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~  180 (196)
T 3p2t_A          114 GKSVTLLCQSRSPM-DTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSH  180 (196)
T ss_dssp             TCCEEEEEEEEEEE-EEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGT
T ss_pred             CCeEEEEEecCCCC-CEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCC
Confidence            99999999998854 45555  3332             1245799999999999999  78888774

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.77  E-value=1.2e-17  Score=106.69  Aligned_cols=117  Identities=13%  Similarity=0.027  Sum_probs=88.3

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCC-ceeeeEEEEEec---CCeEEecCceEeeCCCCeEEEEEE
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICN   77 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~-~~s~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~   77 (139)
                      +.|+|++.........|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..   +|.+...+ ...+.+|+++.|.|.
T Consensus        38 ~~W~k~g~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~  116 (184)
T 2gi7_A           38 YRLEKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQ  116 (184)
T ss_dssp             EEEEETTTCCEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEE
T ss_pred             EEEEECCccccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEE
Confidence            6899998765556789999999999999999999997653 245677888853   56666554 346678999999999


Q ss_pred             eeeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         78 VYANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        78 ~~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      +.+.| +.+.|  ++...        ....|.|..+..+|.|.|  .|.|..+..
T Consensus       117 ~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~  170 (184)
T 2gi7_A          117 TRYGF-DQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDPY  170 (184)
T ss_dssp             CSSCC-CEEEEEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTSTT
T ss_pred             cCCCC-cEEEEEECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCCCc
Confidence            88665 46666  33321        345788999999999999  677765443

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.76  E-value=9.9e-18  Score=114.77  Aligned_cols=133  Identities=15%  Similarity=0.122  Sum_probs=100.1

Q ss_pred             eEEEECCEEeeec-------------CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecCCeEEecC-ceEee
Q psy12134          2 LVIFFSKIELLYN-------------RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEK-QWIHT   66 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~p~~~~~~-~~~~~   66 (139)
                      +.|++++..+...             .+.|.|.....+|+|.|+|.+.|..+.. .+..+.|.|.++|.+.... ....+
T Consensus       150 i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~  229 (313)
T 4fqp_A          150 ITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWY  229 (313)
T ss_dssp             EEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEE
T ss_pred             EEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceee
Confidence            7899998765321             1458898999999999999999976543 5667788888999876433 33455


Q ss_pred             CCCCeEEEEEEeeeCCCc-EEEE--cCee------eecceEEEEecCCCCceeE--EEEcccCCCCCCCCcceeeeeCCC
Q psy12134         67 APDMRAEIICNVYANPPA-KRFD--EGTR------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLRPSAYMADAP  135 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~-~~~~--~~~~------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~~~~~~~~~  135 (139)
                      ..|+.+.|.|.+.++|.| .+.|  ++..      ..++.|.|.++..+|.|.|  .|.|.+|+..   ....+.+.++|
T Consensus       230 ~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~---~~~~l~V~~~P  306 (313)
T 4fqp_A          230 LGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQ---AELTVQVKEGP  306 (313)
T ss_dssp             TTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEECSSCEEE---EEEEEEEECCC
T ss_pred             cCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEE---EEEEEEEEeCC
Confidence            678999999999999988 4778  3332      3456899999999999999  8899998754   34556677777


Q ss_pred             CC
Q psy12134        136 PT  137 (139)
Q Consensus       136 ~~  137 (139)
                      |-
T Consensus       307 P~  308 (313)
T 4fqp_A          307 PH  308 (313)
T ss_dssp             --
T ss_pred             CC
Confidence            73

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.76  E-value=2.5e-17  Score=106.40  Aligned_cols=118  Identities=11%  Similarity=0.095  Sum_probs=89.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC---CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EG   90 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~   90 (139)
                      ..|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+   |.+......  +..|+.+.|.|.+.+.| +.+.|  ++
T Consensus        71 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g  147 (208)
T 3r4d_A           71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNS  147 (208)
T ss_dssp             SCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETT
T ss_pred             CeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECC
Confidence            579999999999999999999986544677888888765   555544443  77899999999999876 67777  44


Q ss_pred             eee----------ecceEEEEecCCCCceeE--EEEcccCCCCCCCCcceeeeeCCCC
Q psy12134         91 TRF----------DEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLRPSAYMADAPP  136 (139)
Q Consensus        91 ~~~----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~~~~~~~~~~  136 (139)
                      ..+          ....|.|..+..+|.|.|  .+.|.+|+..+..++.....++..+
T Consensus       148 ~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~~  205 (208)
T 3r4d_A          148 QSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH  205 (208)
T ss_dssp             EECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC------
T ss_pred             EeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCccc
Confidence            332          236799999999999999  8899999988777777766665443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.76  E-value=9.1e-18  Score=123.58  Aligned_cols=119  Identities=14%  Similarity=0.247  Sum_probs=99.6

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCe
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR   71 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~   71 (139)
                      +.|+|++.++...          ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|.+...+....+..|++
T Consensus       323 v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~P~~~~~~~~~~~~~G~~  401 (570)
T 3b43_A          323 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGAD  401 (570)
T ss_dssp             EEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBC-CEEEEEECEECCCEECSCCCCEEECTTCC
T ss_pred             EEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCE-EEEEEEEEecCCCeeecCCCceeecCCCE
Confidence            7899999876432          256999999999999999999999988 57888999999998887777777889999


Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee---------e---cceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF---------D---EGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~---------~---~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.|.|.+.+.|++.+.|  ++..+         .   ...|.|.++..+|.|.|  .|.|.+|+..
T Consensus       402 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  467 (570)
T 3b43_A          402 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT  467 (570)
T ss_dssp             EEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             EEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEE
Confidence            99999999999998888  44321         1   13688899999999999  8899998765

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.76  E-value=1.9e-17  Score=107.24  Aligned_cols=119  Identities=13%  Similarity=0.109  Sum_probs=90.9

Q ss_pred             eEEEECCEEeeecC----------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec------------------
Q psy12134          2 LVIFFSKIELLYNR----------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY------------------   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~------------------   53 (139)
                      +.|+|++.++....          ..|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..                  
T Consensus        35 i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~  113 (212)
T 2r15_A           35 VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAE  113 (212)
T ss_dssp             EEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcc-eEEEEEEEEeeccchhhhccccCcccccc
Confidence            78999998765421          34999999999999999999997766 35566665542                  


Q ss_pred             --CCeEE-ecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeeee-------------cceEEEEecCCCCceeE--EE
Q psy12134         54 --PPEVS-VEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRFD-------------EGTVTAKVLQPFSERTL--SV  113 (139)
Q Consensus        54 --~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~-------------~~~l~i~~~~~~d~g~y--~~  113 (139)
                        .|.+. ..+....+..|+.+.|.|.+.+.|.+.+.|  ++..+.             ...|.|..+..+|.|.|  .+
T Consensus       114 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  193 (212)
T 2r15_A          114 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV  193 (212)
T ss_dssp             HHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEE
Confidence              34443 445556778999999999999999999988  433321             12789999999999999  78


Q ss_pred             EcccCCCC
Q psy12134        114 QDKIGPGP  121 (139)
Q Consensus       114 ~n~~g~~~  121 (139)
                      .|..|...
T Consensus       194 ~N~~g~~~  201 (212)
T 2r15_A          194 KNKYGSET  201 (212)
T ss_dssp             EETTEEEE
T ss_pred             EcCCCcEE
Confidence            99988653

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.75  E-value=1.1e-17  Score=123.11  Aligned_cols=121  Identities=17%  Similarity=0.180  Sum_probs=100.8

Q ss_pred             eEEEECCEEeeecC----------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCe
Q psy12134          2 LVIFFSKIELLYNR----------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR   71 (139)
Q Consensus         2 ~~W~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~   71 (139)
                      +.|+|++.++....          ..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..+|.+...+....+..|+.
T Consensus       416 v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v~~~P~~~~~~~~~~~~~g~~  494 (570)
T 3b43_A          416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDISTVVGEE  494 (570)
T ss_dssp             CEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEECCCCEEEECCCCBCCBTTCC
T ss_pred             EEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCe-EEEEEEEEeccCCcccccCCCceecCCCe
Confidence            78999998764321          47899999999999999999999998 57788999999999887777777789999


Q ss_pred             EEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         72 AEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      +.|.|.+.+.|++.+.|  ++...             ....|.|..+..+|.|.|  .|.|.+|....+
T Consensus       495 ~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~  563 (570)
T 3b43_A          495 VQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECF  563 (570)
T ss_dssp             EEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEE
T ss_pred             EEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEE
Confidence            99999999999998888  33221             124789999999999999  899999987643

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.75  E-value=6.9e-18  Score=118.70  Aligned_cols=120  Identities=15%  Similarity=0.161  Sum_probs=101.8

Q ss_pred             eEEEECCEEeeec--------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEE
Q psy12134          2 LVIFFSKIELLYN--------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE   73 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~   73 (139)
                      +.|++++..+...        .+.|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.+...+....+..|+.+.
T Consensus       253 ~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~  331 (403)
T 3laf_A          253 FTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN-ISASAELTVLVPPWFLNHPSNLYAYESMDIE  331 (403)
T ss_dssp             EEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEECCTTCCEE
T ss_pred             EEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCc-eEEEEEEEEECCCcEeecCcceEEecCCeEE
Confidence            7899999876432        467999999999999999999999877 5888999999999888777777888999999


Q ss_pred             EEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         74 IICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        74 l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      |.|.+.+.|++.+.|  ++..         .....|.|..+..+|.|.|  .|.|.+|....
T Consensus       332 l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  393 (403)
T 3laf_A          332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQS  393 (403)
T ss_dssp             ECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEE
Confidence            999999999999888  4433         1345799999999999999  88999887654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.75  E-value=2.4e-17  Score=106.20  Aligned_cols=116  Identities=14%  Similarity=0.182  Sum_probs=87.7

Q ss_pred             eEEEECCEEee---------ecCCeEEEcccCCCCCEEEEEEEEcCC-CC-ceeeeEEEEEec---CCeEEecCceEeeC
Q psy12134          2 LVIFFSKIELL---------YNRESLDLDRVTLKLAGLYQCIASNNI-GE-STSKNFIVNVIY---PPEVSVEKQWIHTA   67 (139)
Q Consensus         2 ~~W~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~~~n~~-~~-~~s~~~~l~v~~---~p~~~~~~~~~~~~   67 (139)
                      +.|+|++..+.         .....|.|.+++.+|+|.|+|.+.|.. +. ..+..+.|.|..   +|.+...+. ..+.
T Consensus        35 ~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~  113 (198)
T 1ugn_A           35 YRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS-PVVN  113 (198)
T ss_dssp             EEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESC-SEEE
T ss_pred             EEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCc-cccC
Confidence            78999998763         235789999999999999999999976 42 246778888887   456654443 3567


Q ss_pred             CCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         68 PDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      +|+++.|.|.+.+. ++.+.|  ++...              ....|.|.++..+|.|.|  .|.|..+.
T Consensus       114 ~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~  182 (198)
T 1ugn_A          114 SGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSP  182 (198)
T ss_dssp             TTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTST
T ss_pred             CCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCC
Confidence            89999999999988 667777  33221              126899999999999999  67777553

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.75  E-value=5.9e-18  Score=108.99  Aligned_cols=115  Identities=15%  Similarity=0.103  Sum_probs=79.1

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEec---CCeEEecCceEeeCC
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIY---PPEVSVEKQWIHTAP   68 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~---~p~~~~~~~~~~~~~   68 (139)
                      +.|+|++..+..         ....|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.|..   +|.+...+. ..+.+
T Consensus        35 ~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~  113 (196)
T 2d3v_A           35 YRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTS  113 (196)
T ss_dssp             EEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC---------
T ss_pred             EEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCC-ccccC
Confidence            789999876531         23689999999999999999999876532 35678888877   466654433 46678


Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      |+++.|.|.+.+.| +.+.|  ++...              ....|.|..+..+|.|.|  .|.|..+
T Consensus       114 G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          114 GENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             ---CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             CCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            99999999999988 77777  33221              126789999999999999  6677654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.75  E-value=1e-17  Score=107.45  Aligned_cols=118  Identities=15%  Similarity=0.111  Sum_probs=93.4

Q ss_pred             eEEEECCEEeeec----------C--CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecC-----ceE
Q psy12134          2 LVIFFSKIELLYN----------R--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-----QWI   64 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~--~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~-----~~~   64 (139)
                      +.|++++..+...          +  ..|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+....     ...
T Consensus        36 v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~  114 (197)
T 2j8h_A           36 VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAV  114 (197)
T ss_dssp             EEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEE-EEEEEEEEEEEEEEECCSSCBTTBEEE
T ss_pred             EEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCc-eeEEEEEEEcCCCcCCCCccccccCeE
Confidence            6899999876432          1  28999999999999999999998777 5788899998877664322     345


Q ss_pred             eeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEe-cCCCCceeE--EEEcccCCC
Q psy12134         65 HTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKV-LQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~-~~~~d~g~y--~~~n~~g~~  120 (139)
                      .+..|+.+.|.|.+.+.|++.+.|  ++..+            ....|.|.. +..+|.|.|  .+.|..|..
T Consensus       115 ~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~  187 (197)
T 2j8h_A          115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID  187 (197)
T ss_dssp             EEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEE
T ss_pred             EEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcE
Confidence            667899999999999999999888  33321            124678888 999999999  788988864

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.74  E-value=2.1e-17  Score=108.44  Aligned_cols=114  Identities=15%  Similarity=0.097  Sum_probs=85.1

Q ss_pred             eEEEECCEEeee---------cCC--eEEEcccCCCCCEEEEEEEEcCCCC-ceeeeEEEEEec---CCeEEecCceEee
Q psy12134          2 LVIFFSKIELLY---------NRE--SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIY---PPEVSVEKQWIHT   66 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~--~L~i~~v~~~d~G~Y~C~~~n~~~~-~~s~~~~l~v~~---~p~~~~~~~~~~~   66 (139)
                      +.|+|+|..+..         ...  .|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..   +|.+...+. ..+
T Consensus        39 ~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~-~~v  117 (218)
T 1uct_A           39 TQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRG-LVL  117 (218)
T ss_dssp             EEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESSC-SEE
T ss_pred             EEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCC-Ccc
Confidence            789998765431         235  8999999999999999999997652 245678888875   566655443 366


Q ss_pred             CCCCeEEEEEEeeeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         67 APDMRAEIICNVYANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      .+|++++|.|...+.|++.+.|  ++...        ....|.|..+..+|.|.|  .|.|.
T Consensus       118 ~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  179 (218)
T 1uct_A          118 MPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN  179 (218)
T ss_dssp             CTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEccCCcccCEEEEEEEEcC
Confidence            8999999999777777777777  33321        246799999999999999  55554

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.73  E-value=1.7e-17  Score=107.96  Aligned_cols=128  Identities=19%  Similarity=0.267  Sum_probs=96.8

Q ss_pred             eEEEECCEEeeec----------CCeE----EEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec-CCeEEecCceEee
Q psy12134          2 LVIFFSKIELLYN----------RESL----DLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHT   66 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L----~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~-~p~~~~~~~~~~~   66 (139)
                      +.|+|++..+...          .+.+    .|.+++.+|+|.|+|.+.|..+...+..+.|.|.. +|.+...+....+
T Consensus        41 v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~  120 (217)
T 2vr9_A           41 IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRV  120 (217)
T ss_dssp             EEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEE
T ss_pred             EEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEE
Confidence            7899999876442          2223    57889999999999999998876445567777765 4445455556677


Q ss_pred             CCCCeEEEEEEe-eeCCCcEEEE--cCeee-----------------ecceEEEEecCCCCceeE--EEEcccCCCCCCC
Q psy12134         67 APDMRAEIICNV-YANPPAKRFD--EGTRF-----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPDSN  124 (139)
Q Consensus        67 ~~g~~~~l~C~~-~~~p~~~~~~--~~~~~-----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~  124 (139)
                      ..|+.+.|.|.+ .+.|.+.+.|  ++..+                 ..+.|.|..+..+|.|.|  .+.|.+|....+.
T Consensus       121 ~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~  200 (217)
T 2vr9_A          121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSY  200 (217)
T ss_dssp             CTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCC
T ss_pred             cCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceecccc
Confidence            899999999999 8999999988  33322                 235799999999999999  8899999877654


Q ss_pred             Cccee
Q psy12134        125 LRPSA  129 (139)
Q Consensus       125 ~~~~~  129 (139)
                      .....
T Consensus       201 ~~lv~  205 (217)
T 2vr9_A          201 AKLIV  205 (217)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44433

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.73  E-value=2.7e-17  Score=106.30  Aligned_cols=106  Identities=20%  Similarity=0.317  Sum_probs=85.4

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCC-ceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEE-eeeCCCcEEEE--cC
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN-VYANPPAKRFD--EG   90 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~-~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~~~~--~~   90 (139)
                      ...|.|.+++.+|+|.|+|.+.|..|. ..+..+.|.|..+|.+........+..|+.+.|.|. +.+.|++.+.|  ++
T Consensus        64 ~~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~  143 (212)
T 1f97_A           64 SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDG  143 (212)
T ss_dssp             TTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETT
T ss_pred             ceeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCC
Confidence            378999999999999999999998763 257788899998887653333345678999999999 78999999888  44


Q ss_pred             e-ee-------------------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         91 T-RF-------------------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        91 ~-~~-------------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      . .+                   ....|.|..+..+|.|.|  .|.|..|..
T Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          144 ISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA  195 (212)
T ss_dssp             EESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             cccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCc
Confidence            4 21                   245789999999999999  788998877

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.73  E-value=5.3e-17  Score=101.98  Aligned_cols=115  Identities=10%  Similarity=0.028  Sum_probs=91.7

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeee-
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-   80 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-   80 (139)
                      +.|+|++..+......+.|.+++.+|+|.|+|.+.|..   .+..+.|.|..++.+...+. ..+.+|+.+.|.|.+.+ 
T Consensus        37 ~~W~~~g~~~~~~~~~~~~~~~~~~d~G~Y~C~~~~~~---~s~~~~l~v~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~  112 (170)
T 3ry4_A           37 IQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTS---LSDPVHLTVLFEWLVLQTPH-LEFQEGETIMLRCHSWKD  112 (170)
T ss_dssp             EEEEETTEECTTCCSSEEEEECCGGGCEEEEEEETTSB---CCCCEEEEEECCSEEEECSC-SEECTTCCEEEEEEEGGG
T ss_pred             EEEEECCeEcccCccceEEEecccccCeEEEEEEeCCC---ceEeEEEEEECCceEecCCC-ceeecCCeEEEEEECCCC
Confidence            78999999988877888899999999999999998743   45678899998876655443 45678999999999955 


Q ss_pred             CCCcEEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         81 NPPAKRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        81 ~p~~~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      .|.+.+.|  ++...    ....|.|..+..+|.|.|  .+.|..|..
T Consensus       113 ~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  160 (170)
T 3ry4_A          113 KPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLF  160 (170)
T ss_dssp             CCEEEEEEEETTEEEEEESSCCEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCCceEEEEECCeEccccCCCCeEEEEeccccCCEEEEEEEEeCcCcc
Confidence            45577777  44432    346899999999999999  788887753

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.73  E-value=6.1e-17  Score=102.97  Aligned_cols=120  Identities=14%  Similarity=0.233  Sum_probs=90.4

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecCCeEEecCc--eEeeCCC
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQ--WIHTAPD   69 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~p~~~~~~~--~~~~~~g   69 (139)
                      +.|++++..+..         .++.|.|.+++.+|+|.|+|.+.|..+.. ....+.+.|..+|.+.....  ...+..|
T Consensus        34 v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g  113 (189)
T 2v5t_A           34 VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERG  113 (189)
T ss_dssp             EEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSC
T ss_pred             EEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCC
Confidence            689999877642         24679999999999999999999887442 34667788888887765443  3466789


Q ss_pred             CeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         70 MRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        70 ~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.+.|.|.+.+.|.+.+.|  ++..+          ....|.|..+..+|.|.|  .+.|..|...
T Consensus       114 ~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  179 (189)
T 2v5t_A          114 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDE  179 (189)
T ss_dssp             CCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCcee
Confidence            9999999999999998888  44332          235799999999999999  7888888755

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.73  E-value=6.2e-17  Score=120.28  Aligned_cols=122  Identities=17%  Similarity=0.201  Sum_probs=100.8

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe-EEecCceEeeCCCCeE
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTAPDMRA   72 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~-~~~~~~~~~~~~g~~~   72 (139)
                      +.|++++.++..        ....|.|.+++..|+|.|+|.+.|..|...+..+.|.|..+|. +...+....+..|+.+
T Consensus       498 i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~  577 (642)
T 1e07_A          498 YLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANL  577 (642)
T ss_pred             EEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcE
Confidence            789999987643        2468999999999999999999999987556678999987664 4455566677899999


Q ss_pred             EEEEEeeeCCCcEEEE--cCeee-ecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         73 EIICNVYANPPAKRFD--EGTRF-DEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        73 ~l~C~~~~~p~~~~~~--~~~~~-~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      .|.|.+.+.|++.+.|  ++..+ ....|.|..+..+|.|.|  .|.|.+|....+
T Consensus       578 ~l~C~~~g~p~p~v~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s  633 (642)
T 1e07_A          578 NLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNS  633 (642)
T ss_pred             EEEEEeccCCCCeEEEEECCEECccCceEEECcccccCCeEEEEEEEecccCccee
Confidence            9999999999999988  44443 345799999999999999  899999987644

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.73  E-value=3.8e-17  Score=114.41  Aligned_cols=119  Identities=13%  Similarity=0.051  Sum_probs=100.9

Q ss_pred             eEEEECCEEee----ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEE
Q psy12134          2 LVIFFSKIELL----YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN   77 (139)
Q Consensus         2 ~~W~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~   77 (139)
                      +.|++++..+.    .....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.+...+....+..|+.+.|.|.
T Consensus       239 i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~  317 (382)
T 1cs6_A          239 IKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCV  317 (382)
T ss_dssp             EEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECE
T ss_pred             EEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCCCe-EEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEE
Confidence            68999887654    24578999999999999999999999887 57888999999998877666677889999999999


Q ss_pred             eeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         78 VYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        78 ~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.+.|++.+.|  ++..        ...+.|.|..+..+|.|.|  .|.|.+|...
T Consensus       318 ~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  373 (382)
T 1cs6_A          318 ASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVY  373 (382)
T ss_dssp             EEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEE
Confidence            99999999988  4433        2345799999999999999  8899988764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.73  E-value=1.7e-16  Score=109.54  Aligned_cols=120  Identities=15%  Similarity=0.089  Sum_probs=93.1

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcC--CCCc---eeeeEEEEEecCC----eEEecCceEe
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNN--IGES---TSKNFIVNVIYPP----EVSVEKQWIH   65 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~--~~~~---~s~~~~l~v~~~p----~~~~~~~~~~   65 (139)
                      +.|+|++..+..       .+..|.|.+++.+|+|.|+|.+.|.  .|..   .+..+.|.|..+|    .+. .+....
T Consensus       161 i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~  239 (329)
T 3oq3_B          161 ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKIN  239 (329)
T ss_dssp             EEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEE
T ss_pred             EEEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeE
Confidence            789999988742       2578999999999999999999987  5432   2344778888776    344 555678


Q ss_pred             eCCCCeEEEEEEeeeCC---Cc-EEEE--cCeee-----------------ecceEEEEecCCCCce-eE--EEEcccCC
Q psy12134         66 TAPDMRAEIICNVYANP---PA-KRFD--EGTRF-----------------DEGTVTAKVLQPFSER-TL--SVQDKIGP  119 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~p---~~-~~~~--~~~~~-----------------~~~~l~i~~~~~~d~g-~y--~~~n~~g~  119 (139)
                      +..|+.+.|.|.+.+.|   ++ .+.|  ++...                 ....|.|..+..+|.| .|  .|.|.+|.
T Consensus       240 v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~  319 (329)
T 3oq3_B          240 VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD  319 (329)
T ss_dssp             ECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCE
T ss_pred             EecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCc
Confidence            88999999999999998   66 6688  33221                 2356899999999999 99  88998887


Q ss_pred             CCC
Q psy12134        120 GPD  122 (139)
Q Consensus       120 ~~~  122 (139)
                      ...
T Consensus       320 ~~~  322 (329)
T 3oq3_B          320 KTL  322 (329)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            653

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.73  E-value=1.1e-17  Score=107.21  Aligned_cols=115  Identities=13%  Similarity=0.036  Sum_probs=84.3

Q ss_pred             eEEEECCEEeee-cCCeEEEcc-cCCCCCEEEEEEEEcCCCCceeeeEEEEEec--CCeE----------------EecC
Q psy12134          2 LVIFFSKIELLY-NRESLDLDR-VTLKLAGLYQCIASNNIGESTSKNFIVNVIY--PPEV----------------SVEK   61 (139)
Q Consensus         2 ~~W~~~~~~~~~-~~~~L~i~~-v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~--~p~~----------------~~~~   61 (139)
                      +.|+|+|..+.. .+..|.|.+ ++.+|+|.|+|.+.|..|. .+..+.+.|..  ++..                ....
T Consensus        29 i~W~k~g~~l~~~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (186)
T 1jbj_A           29 LKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKN-TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQT  107 (186)
T ss_dssp             CEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSSCCCC-CCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSC
T ss_pred             eEEEECCEECCCCCCCEEEECCCCccccCEEEEEEEEeCCCc-EEEEEEEEEecccccccccccccccccCCcccccccc
Confidence            689999999877 578999999 9999999999999998876 34444444332  2210                0000


Q ss_pred             ----ce---EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         62 ----QW---IHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        62 ----~~---~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                          ..   ..+..|+++.|.|.+   |.+.+.|  ++..+     ....|.|..+..+|.|.|  .|.|..|..
T Consensus       108 ~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          108 NKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSCCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             ccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCCCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence                00   123489999999999   6777877  55443     356899999999999999  788888764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.72  E-value=2.9e-17  Score=111.97  Aligned_cols=121  Identities=14%  Similarity=0.218  Sum_probs=92.2

Q ss_pred             eEEEECCEEeeec--------C---CeEEEcccCC-CCCEEEEEEEEcCCCCceeeeEEEEEecC-------CeEEecCc
Q psy12134          2 LVIFFSKIELLYN--------R---ESLDLDRVTL-KLAGLYQCIASNNIGESTSKNFIVNVIYP-------PEVSVEKQ   62 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~---~~L~i~~v~~-~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~-------p~~~~~~~   62 (139)
                      +.|+|++..+...        .   ..|.|.+++. +|+|.|+|.+.|..|. .+..+.|.|..+       |.+...+.
T Consensus        38 i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~~~  116 (304)
T 2yd9_A           38 VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQ  116 (304)
T ss_dssp             EEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCE-ECCEEEEEEECGGGCCTTCCEEEECCC
T ss_pred             EEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCe-EEEEEEEEEeccccCCCCCCeeecCCc
Confidence            7899998775321        1   5799999998 9999999999999887 578889999875       66766666


Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      ...+..|+.+.|.|.+.+.|.+.+.|  ++..            ...+.|.|..+..+|.|.|  .+.|..|.....
T Consensus       117 ~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  193 (304)
T 2yd9_A          117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSS  193 (304)
T ss_dssp             CEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             cEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEec
Confidence            66778899999999999999998888  3332            1235799999999999999  778888765544

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.72  E-value=5.6e-17  Score=104.82  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=85.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEe-eeCCCcEEEEcC--e-
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKRFDEG--T-   91 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~~~--~-   91 (139)
                      ..|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+........+..|+.+.|.|.+ .+.|.+.+.|..  . 
T Consensus        84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~  162 (214)
T 3jz7_A           84 ASINVTNLQLSDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDS  162 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTT
T ss_pred             ccEEEccCChhhCeEEEEEEEeCCCc-cccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCC
Confidence            56999999999999999999998776 578899999988765433333346789999999999 889999998822  1 


Q ss_pred             -e--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         92 -R--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        92 -~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                       .        ...+.|.|..+..+|.|.|  .|.|.+|...
T Consensus       163 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~  203 (214)
T 3jz7_A          163 QTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQ  203 (214)
T ss_dssp             CCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEE
Confidence             1        1346899999999999999  7889888764

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.72  E-value=8.4e-17  Score=114.97  Aligned_cols=116  Identities=10%  Similarity=0.002  Sum_probs=91.4

Q ss_pred             eEEEECCEEeeec----------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecC--ce
Q psy12134          2 LVIFFSKIELLYN----------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK--QW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~--~~   63 (139)
                      ++|+|++..+...                ...|.|.+++.+|+|.|+|.|.|.    .+..+.|.|..+|.+...+  ..
T Consensus       260 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~----~~~~~~L~V~~~p~i~~~~~~~~  335 (423)
T 3qs7_E          260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSED  335 (423)
T ss_dssp             EEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE----EEEEEEEEEESSCEEEEC---CE
T ss_pred             EEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC----CCceEEEEEEeCCcceEcCCCcc
Confidence            7899998764321                147999999999999999999997    5788999999998876543  45


Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCeeeec------ceEEE--EecCCCCceeE--EEEcccCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRFDE------GTVTA--KVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~~------~~l~i--~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+.+|+++.|.|.+.+.|++.+.|  ++..+..      ..+.+  .....+|.|.|  .|.|..|+..
T Consensus       336 ~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~  405 (423)
T 3qs7_E          336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFT  405 (423)
T ss_dssp             ECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEE
T ss_pred             EEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEE
Confidence            6678899999999999999999988  5554421      12333  66778999999  8999988765

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.72  E-value=8.9e-17  Score=102.17  Aligned_cols=113  Identities=9%  Similarity=0.047  Sum_probs=85.7

Q ss_pred             eEEEECCEEee-----------------ecCCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecCC---eEEec
Q psy12134          2 LVIFFSKIELL-----------------YNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPP---EVSVE   60 (139)
Q Consensus         2 ~~W~~~~~~~~-----------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~p---~~~~~   60 (139)
                      +.|+|++..+.                 ...+.|.|.+++.+|+|.|+|.+.|..|.. .+..+.|.|..++   .+.  
T Consensus        30 i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p~i~--  107 (176)
T 1hng_A           30 VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIY--  107 (176)
T ss_dssp             EEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCCEEE--
T ss_pred             EEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCCEEE--
Confidence            78999986542                 123569999999999999999999998874 3677888887642   222  


Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                            ..+..+.|.|.+.+.|++.+.|  ++..+ ....+.+..+..+|.|.|  .|.|.+|....
T Consensus       108 ------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~~~i~~~~~~d~G~Y~C~a~N~~g~~~~  168 (176)
T 1hng_A          108 ------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE  168 (176)
T ss_dssp             ------EETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSCEEEEEEETTEEEEE
T ss_pred             ------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCcEEEEEEEccCCeEEEEEEEecCCCcee
Confidence                  1245689999999999999988  55443 233466778889999999  88999887654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.72  E-value=1.5e-16  Score=107.41  Aligned_cols=121  Identities=14%  Similarity=0.189  Sum_probs=94.2

Q ss_pred             eEEEE-CCEEee-------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe----cCCeEEecCceEeeCCC
Q psy12134          2 LVIFF-SKIELL-------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPD   69 (139)
Q Consensus         2 ~~W~~-~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g   69 (139)
                      +.|++ ++..+.       ..+..|.|.+++.+|+|.|+|.+.|......+..+.|.|.    .+|.+...+....+..|
T Consensus       122 v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g  201 (289)
T 3ejj_X          122 VSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRG  201 (289)
T ss_dssp             EEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSS
T ss_pred             EEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeC
Confidence            78987 444432       2347899999999999999999994332335788889998    67888777776677789


Q ss_pred             CeEEEEEEeee-CCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         70 MRAEIICNVYA-NPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        70 ~~~~l~C~~~~-~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.+.|.|.+.+ .|.+.+.|  ++..+              ....|.|..+..+|.|.|  .|.|.+|....
T Consensus       202 ~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  273 (289)
T 3ejj_X          202 EAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTA  273 (289)
T ss_dssp             SCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEE
T ss_pred             CcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccc
Confidence            99999999998 68888888  33321              145799999999999999  88999887664

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.72  E-value=2.4e-16  Score=107.75  Aligned_cols=120  Identities=17%  Similarity=0.210  Sum_probs=92.6

Q ss_pred             eEEEECCEEee-------ecCCeEEEcccCCCCCEEEEEEEE-cCCCCce--eeeEEEEEe-----cCCeEEecCce-Ee
Q psy12134          2 LVIFFSKIELL-------YNRESLDLDRVTLKLAGLYQCIAS-NNIGEST--SKNFIVNVI-----YPPEVSVEKQW-IH   65 (139)
Q Consensus         2 ~~W~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~~~-n~~~~~~--s~~~~l~v~-----~~p~~~~~~~~-~~   65 (139)
                      +.|+|++.++.       ..+..|.|.+++.+|+|.|+|.+. |..|...  +..+.+.+.     .+|.+...+.. ..
T Consensus       141 i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~  220 (315)
T 1itb_B          141 LQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETME  220 (315)
T ss_dssp             CEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEE
T ss_pred             EEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEE
Confidence            78999998873       235789999999999999999999 7777642  334444443     56766544443 46


Q ss_pred             eCCCCeEEEEEEeeeCCCcEEEE--cCeeee------------------------cceEEEEecCCCC-ceeE--EEEcc
Q psy12134         66 TAPDMRAEIICNVYANPPAKRFD--EGTRFD------------------------EGTVTAKVLQPFS-ERTL--SVQDK  116 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~------------------------~~~l~i~~~~~~d-~g~y--~~~n~  116 (139)
                      +..|+.+.|.|.+.+.|.+.+.|  ++..+.                        ...|.|..+..+| .|.|  .|.|.
T Consensus       221 ~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~  300 (315)
T 1itb_B          221 VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT  300 (315)
T ss_dssp             CCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECT
T ss_pred             EeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecC
Confidence            78999999999999999999888  433211                        1278999999999 9999  88999


Q ss_pred             cCCCC
Q psy12134        117 IGPGP  121 (139)
Q Consensus       117 ~g~~~  121 (139)
                      +|...
T Consensus       301 ~G~~~  305 (315)
T 1itb_B          301 HGIDA  305 (315)
T ss_dssp             TCCEE
T ss_pred             CCcee
Confidence            98765

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.72  E-value=1.5e-16  Score=101.62  Aligned_cols=119  Identities=16%  Similarity=0.152  Sum_probs=92.7

Q ss_pred             eEEEECCEEeeecC----------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEec---CceEeeCC
Q psy12134          2 LVIFFSKIELLYNR----------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE---KQWIHTAP   68 (139)
Q Consensus         2 ~~W~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~---~~~~~~~~   68 (139)
                      +.|++++..+....          ..|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..+|.+...   .....+..
T Consensus        39 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~~  117 (197)
T 3lcy_A           39 IKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGE-VETSSKLLLQATPQFHPGYPLKEKYYGAV  117 (197)
T ss_dssp             EEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEECTTSCCCSEEEEET
T ss_pred             EEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCc-eeEEEEEEEEcCCCCCCCccCCcceeecC
Confidence            78999998774321          27999999999999999999998877 577888888887766532   24456678


Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCC-CCceeE--EEEcccCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQP-FSERTL--SVQDKIGPGP  121 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~-~d~g~y--~~~n~~g~~~  121 (139)
                      |+.+.|.|.+.+.|++.+.|  ++..+            ....|.|..+.. +|.|.|  .+.|.+|...
T Consensus       118 g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~  187 (197)
T 3lcy_A          118 GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVD  187 (197)
T ss_dssp             TSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEE
T ss_pred             CCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceE
Confidence            99999999999999999988  33321            114688888874 899999  7888888754

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.71  E-value=8.7e-17  Score=105.14  Aligned_cols=118  Identities=16%  Similarity=0.240  Sum_probs=91.5

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC----CeEEe-cCceEe
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP----PEVSV-EKQWIH   65 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~----p~~~~-~~~~~~   65 (139)
                      +.|++++..+...           ...|.|.+++.+|+|.|+|.+.|..+. ....+.|.|...    |.+.. .+....
T Consensus        51 v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~p~~~~~~~~~~~  129 (231)
T 3ojm_B           51 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVVERSRHRPILQAGLPANAS  129 (231)
T ss_dssp             EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCCCCCEECTTCSCCEE
T ss_pred             EEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCc-ccccEEEEEEcCCCCCCceeeccCCceE
Confidence            7899999887432           247999999999999999999998776 467788888753    33332 234566


Q ss_pred             eCCCCeEEEEEEeeeCCCcEEEEcC------eee-------------------ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         66 TAPDMRAEIICNVYANPPAKRFDEG------TRF-------------------DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~p~~~~~~~~------~~~-------------------~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      +..|+.+.|.|.+.+.|.+.+.|..      ..+                   ....|.|..+..+|.|.|  .+.|..|
T Consensus       130 ~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  209 (231)
T 3ojm_B          130 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG  209 (231)
T ss_dssp             EETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccc
Confidence            7789999999999999999888832      211                   124699999999999999  7888887


Q ss_pred             CC
Q psy12134        119 PG  120 (139)
Q Consensus       119 ~~  120 (139)
                      ..
T Consensus       210 ~~  211 (231)
T 3ojm_B          210 QA  211 (231)
T ss_dssp             EE
T ss_pred             eE
Confidence            76

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.71  E-value=7.6e-17  Score=108.93  Aligned_cols=121  Identities=14%  Similarity=0.232  Sum_probs=92.8

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecCCeEEecCc--eEeeCCC
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQ--WIHTAPD   69 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~p~~~~~~~--~~~~~~g   69 (139)
                      +.|++++..+..         .+..|.|.+++.+|+|.|+|.+.|..+.. ....+.+.|..+|.+.....  ...+..|
T Consensus       130 v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g  209 (291)
T 2wim_A          130 VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERG  209 (291)
T ss_dssp             EEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSC
T ss_pred             EEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCC
Confidence            689999877642         24679999999999999999999987442 45677888888887765443  3356789


Q ss_pred             CeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         70 MRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        70 ~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      +.+.|.|.+.+.|.+.+.|  ++..+          ....|.|..+..+|.|.|  .|.|.+|....
T Consensus       210 ~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  276 (291)
T 2wim_A          210 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK  276 (291)
T ss_dssp             CEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEE
T ss_pred             CeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceee
Confidence            9999999999999999988  44332          235799999999999999  88999887653

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.71  E-value=2.9e-16  Score=105.84  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=94.7

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEec-CceEeeCCCC
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE-KQWIHTAPDM   70 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~-~~~~~~~~g~   70 (139)
                      +.|+|++..+...          ...|.|.+++..|+|.|+|.+.|..+. .+..+.|.|..+|.+... .....+..|+
T Consensus        37 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~v~~g~  115 (284)
T 2rik_A           37 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDE  115 (284)
T ss_dssp             EEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCEEEECCCSEEEEETTC
T ss_pred             EEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCce-EEEEEEEEccCCCcccccCCCceEecCCc
Confidence            7899999876432          367999999999999999999998877 588899999999987644 3345677899


Q ss_pred             eEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         71 RAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        71 ~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      .+.|.|.+.+.|.+.+.|  ++...            ....|.|..+..+|.|.|  .+.|..|..
T Consensus       116 ~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  181 (284)
T 2rik_A          116 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA  181 (284)
T ss_dssp             CEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             eEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCce
Confidence            999999999999999888  33321            124688999999999999  677776654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.71  E-value=1.7e-16  Score=104.59  Aligned_cols=119  Identities=14%  Similarity=0.177  Sum_probs=92.6

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec----CCeEE-ecCceEe
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY----PPEVS-VEKQWIH   65 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~----~p~~~-~~~~~~~   65 (139)
                      +.|++++..+...           ...|.|.+++..|+|.|+|.+.|..+. ....+.|.|..    .|.+. ..+....
T Consensus        47 v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~  125 (241)
T 3grw_A           47 ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQT  125 (241)
T ss_dssp             EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCCCCCEEEECTTCSEE
T ss_pred             eEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCc-eEEEEEEEEeccCCCCceeecCCCccce
Confidence            7899999876432           357999999999999999999998776 46778888875    23333 3345567


Q ss_pred             eCCCCeEEEEEEeeeCCCcEEEEcC------eee--------------------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         66 TAPDMRAEIICNVYANPPAKRFDEG------TRF--------------------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~p~~~~~~~~------~~~--------------------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      +..|+.+.|.|.+.+.|.+.+.|..      ..+                    ....|.|..+..+|.|.|  .+.|..
T Consensus       126 ~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~  205 (241)
T 3grw_A          126 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI  205 (241)
T ss_dssp             CCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             ecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCc
Confidence            7889999999999999999988832      211                    134689999999999999  788888


Q ss_pred             CCCC
Q psy12134        118 GPGP  121 (139)
Q Consensus       118 g~~~  121 (139)
                      |...
T Consensus       206 g~~~  209 (241)
T 3grw_A          206 GVAE  209 (241)
T ss_dssp             CEEE
T ss_pred             ceEE
Confidence            7764

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.71  E-value=1.3e-16  Score=107.70  Aligned_cols=120  Identities=16%  Similarity=0.234  Sum_probs=94.8

Q ss_pred             eEEEECCEEee---------ecCCeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEecCCeEEecCc--eEeeCCC
Q psy12134          2 LVIFFSKIELL---------YNRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIYPPEVSVEKQ--WIHTAPD   69 (139)
Q Consensus         2 ~~W~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~~~p~~~~~~~--~~~~~~g   69 (139)
                      +.|++++..+.         ..+..|.|.+++.+|+|.|+|.+.|..+ ...+..+.|.|..+|.+.....  ...+..|
T Consensus       132 v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g  211 (291)
T 1qz1_A          132 IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLG  211 (291)
T ss_dssp             EEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSC
T ss_pred             EEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccC
Confidence            78999987653         2357899999999999999999998763 3345678888888888765433  3466889


Q ss_pred             CeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         70 MRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        70 ~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.+.|.|.+.+.|.+.+.|  ++..+              ....|.|..+..+|.|.|  .|.|.+|...
T Consensus       212 ~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  281 (291)
T 1qz1_A          212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD  281 (291)
T ss_dssp             CCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceE
Confidence            9999999999999999988  33321              124699999999999999  8899988653

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.71  E-value=3.7e-16  Score=100.01  Aligned_cols=113  Identities=14%  Similarity=0.121  Sum_probs=84.0

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCC-ceeeeEEEEEec---CCeEEecCceEeeCC
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIY---PPEVSVEKQWIHTAP   68 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~-~~s~~~~l~v~~---~p~~~~~~~~~~~~~   68 (139)
                      +.|+|++..+..         ....|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..   +|.+...+. ..+.+
T Consensus        34 ~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~  112 (188)
T 1oll_A           34 YQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVIS  112 (188)
T ss_dssp             EEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEESC-SEEET
T ss_pred             EEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECCC-Ccccc
Confidence            689999987642         2367999999999999999999886532 246778888874   566665543 35678


Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcc
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      |+++.|.|.+.+.+ +.+.|  ++..        .....|.|..+..+|.|.|  .|.|.
T Consensus       113 G~~v~L~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~  171 (188)
T 1oll_A          113 GEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN  171 (188)
T ss_dssp             TCEEEEEEECSSSC-SEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEE
T ss_pred             CCEEEEEEEcCCCC-CEEEEEECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcC
Confidence            99999999987654 56666  3322        1346899999999999999  44554

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.71  E-value=2.6e-16  Score=107.24  Aligned_cols=120  Identities=15%  Similarity=0.148  Sum_probs=91.2

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe---cCCeEEecCceEeeCC
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWIHTAP   68 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~---~~p~~~~~~~~~~~~~   68 (139)
                      +.|++++..+..          ..+.|.|.+++.+|+|.|+|.+.|..|...+....|.|.   .+|.+...+....+..
T Consensus       140 v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~  219 (304)
T 2yd9_A          140 ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMP  219 (304)
T ss_dssp             EEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCT
T ss_pred             EEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcC
Confidence            789999987643          246899999999999999999999887644433556553   4676766666667789


Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      |+.+.|.|.+.+.|++.+.|  ++..+      ..+.+.+.....+|.|.|  .|.|.+|...
T Consensus       220 G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~d~G~Y~C~a~N~~G~~~  282 (304)
T 2yd9_A          220 GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIE  282 (304)
T ss_dssp             TCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSCCSCEEEEEEEEETTEEEE
T ss_pred             CCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEcccccCEEEEEEEEeCCCcEE
Confidence            99999999999999999988  44332      233444555555799999  8899988765

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.71  E-value=2.9e-16  Score=116.70  Aligned_cols=122  Identities=18%  Similarity=0.298  Sum_probs=99.6

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE-EecCceEeeCCCCeE
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHTAPDMRA   72 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~-~~~~~~~~~~~g~~~   72 (139)
                      +.|++++.++..        ....|.|.+++.+|+|.|+|.+.|..|...+..+.|.|.++|.. ...+....+..|+.+
T Consensus       320 v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~  399 (642)
T 1e07_A          320 YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNL  399 (642)
T ss_pred             EEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcE
Confidence            789999877533        24789999999999999999999999876677889999887653 344455677899999


Q ss_pred             EEEEEeeeCCCcEEEE--cCeee-ecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         73 EIICNVYANPPAKRFD--EGTRF-DEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        73 ~l~C~~~~~p~~~~~~--~~~~~-~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      .|.|.+.+.|++.+.|  ++... ....|.|..+..+|.|.|  .|.|..|....+
T Consensus       400 ~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s  455 (642)
T 1e07_A          400 SLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRT  455 (642)
T ss_pred             EEEEEcCccCCCeEEEEECCEEcCCCceEEEccCChhhCeEEEEEEEcCCCCCccc
Confidence            9999999999999988  44443 345799999999999999  889998876654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.71  E-value=6.1e-17  Score=109.61  Aligned_cols=119  Identities=13%  Similarity=0.109  Sum_probs=93.4

Q ss_pred             eEEE-ECCEEeee-------cCCeEEEcccCCCCCE-EEEEEEEcCCCCceeeeEEEEEe----cCCeEEecCceEeeCC
Q psy12134          2 LVIF-FSKIELLY-------NRESLDLDRVTLKLAG-LYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAP   68 (139)
Q Consensus         2 ~~W~-~~~~~~~~-------~~~~L~i~~v~~~d~G-~Y~C~~~n~~~~~~s~~~~l~v~----~~p~~~~~~~~~~~~~   68 (139)
                      +.|+ +++..+..       ....|.|.+++.+|+| .|+|.+.|..+...+..+.|.|.    .+|.+...+....+..
T Consensus       123 v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~  202 (290)
T 2o26_X          123 YSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKK  202 (290)
T ss_dssp             EEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCT
T ss_pred             EEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEec
Confidence            7895 56655422       2468999999999999 99999999855544567888887    6788876666667889


Q ss_pred             CCeEEEEEEeeeCCCcE-EEE--cCee-------------------eecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         69 DMRAEIICNVYANPPAK-RFD--EGTR-------------------FDEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~-~~~--~~~~-------------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      |+.+.|.|.+.+.|.+. +.|  ++..                   .....|.|..+..+|.|.|  .|.|.+|..
T Consensus       203 G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~  278 (290)
T 2o26_X          203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA  278 (290)
T ss_dssp             TCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEE
T ss_pred             CCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcE
Confidence            99999999999999886 888  3322                   1245789999999999999  888988876

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.71  E-value=1.4e-16  Score=115.95  Aligned_cols=119  Identities=12%  Similarity=0.107  Sum_probs=96.7

Q ss_pred             eEEEECCEEe--e-------------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecC---ce
Q psy12134          2 LVIFFSKIEL--L-------------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK---QW   63 (139)
Q Consensus         2 ~~W~~~~~~~--~-------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~---~~   63 (139)
                      +.|++++..+  .             ...+.|.|.+++.+|+|.|+|.+.|..|. ....+.|.|..+|.+...+   ..
T Consensus       244 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~  322 (524)
T 2ec8_A          244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGS-ANVTTTLEVVDKGFINIFPMINTT  322 (524)
T ss_dssp             EEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCE-EEEEEEEEEESSCEEEEEESSCSE
T ss_pred             EEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCc-eEEEEEEEEeccCceEeecCCCce
Confidence            7899998762  1             12478999999999999999999999888 4678999999999886543   35


Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE-EEE--cCeee-----------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK-RFD--EGTRF-----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~-~~~--~~~~~-----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+..|+.+.|.|.+.+.|.+. +.|  ++..+                 ....|.|..+..+|.|.|  .|.|..|...
T Consensus       323 ~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  402 (524)
T 2ec8_A          323 VFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAA  402 (524)
T ss_dssp             EEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             EEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEE
Confidence            7788999999999999999998 888  32221                 124799999999999999  8889888743

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.70  E-value=1.1e-16  Score=121.67  Aligned_cols=121  Identities=21%  Similarity=0.246  Sum_probs=102.2

Q ss_pred             eEEEECCEEeee-----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCC
Q psy12134          2 LVIFFSKIELLY-----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDM   70 (139)
Q Consensus         2 ~~W~~~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~   70 (139)
                      +.|++++.++..           ..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|.+...+....+..|+
T Consensus       652 i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~P~~~~~~~~~~v~~G~  730 (816)
T 3dmk_A          652 IDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGH-QQFTTPLNVYVPPRWILEPTDKAFAQGS  730 (816)
T ss_dssp             EEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEECEEEEEEEEECCCCEEEETTC
T ss_pred             EEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCcc-EEEEEEEEEEeCCceeeecccceecCCC
Confidence            789999987632           1367999999999999999999999888 5788899999999988777777888999


Q ss_pred             eEEEEEEeeeCCCcEEEEcCe-----------------eeecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134         71 RAEIICNVYANPPAKRFDEGT-----------------RFDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus        71 ~~~l~C~~~~~p~~~~~~~~~-----------------~~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      .+.|.|.+.+.|++.+.|...                 ....+.|.|.++..+|.|.|  .|.|.+|+...+
T Consensus       731 ~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  802 (816)
T 3dmk_A          731 DAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSA  802 (816)
T ss_dssp             CEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSCEEE
T ss_pred             cEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCCcEE
Confidence            999999999999999988321                 12345799999999999999  899999987743

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.70  E-value=2.4e-16  Score=107.23  Aligned_cols=120  Identities=14%  Similarity=0.097  Sum_probs=94.7

Q ss_pred             eEEEECCEEeeec----------C--CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEec-----CceE
Q psy12134          2 LVIFFSKIELLYN----------R--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE-----KQWI   64 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~--~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~-----~~~~   64 (139)
                      +.|+|++..+...          +  ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.+...     ....
T Consensus        36 v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~  114 (305)
T 2nzi_A           36 VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAV  114 (305)
T ss_dssp             EEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEECEEEEECCCHHHHSSCCE
T ss_pred             EEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCC-ccceEEEEEecCCccCCCccccccccE
Confidence            7899999876432          1  28999999999999999999999877 578889999887766432     2345


Q ss_pred             eeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEe-cCCCCceeE--EEEcccCCCCC
Q psy12134         65 HTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKV-LQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~-~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      .+..|+.+.|.|.+.+.|.+.+.|  ++..+            ....|.+.. +..+|.|.|  .|.|..|....
T Consensus       115 ~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~  189 (305)
T 2nzi_A          115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK  189 (305)
T ss_dssp             EEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEE
T ss_pred             EecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceee
Confidence            667899999999999999999988  32221            224678888 999999999  78998887553

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.70  E-value=2e-16  Score=106.85  Aligned_cols=117  Identities=15%  Similarity=0.197  Sum_probs=94.8

Q ss_pred             eEEEE-CCEEeee------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCC
Q psy12134          2 LVIFF-SKIELLY------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP   68 (139)
Q Consensus         2 ~~W~~-~~~~~~~------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~   68 (139)
                      +.|++ +|..+..            ....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.+...+....+.+
T Consensus        35 i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~  114 (291)
T 1qz1_A           35 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE  114 (291)
T ss_dssp             EEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEET
T ss_pred             eEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccC
Confidence            78999 6654432            1358999999999999999999999876567888999999998887777777889


Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      |+.+.|.|.+.+.|++.+.|  ++..           ...+.|.|..+..+|.|.|  .+.|..+
T Consensus       115 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  179 (291)
T 1qz1_A          115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR  179 (291)
T ss_dssp             TSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             CCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCC
Confidence            99999999999999998888  3322           2345799999999999999  5666543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.70  E-value=8.9e-16  Score=97.48  Aligned_cols=115  Identities=13%  Similarity=0.123  Sum_probs=90.6

Q ss_pred             eEEEECCEEeeecC-----CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEE
Q psy12134          2 LVIFFSKIELLYNR-----ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC   76 (139)
Q Consensus         2 ~~W~~~~~~~~~~~-----~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C   76 (139)
                      +.|+|++..+....     ..|.|.  +.+|+|.|+|.+.|.    .+..+.|.|.++|.+...+....+..|+.+.|.|
T Consensus        32 ~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C  105 (184)
T 3b5h_A           32 HRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPE----PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVC  105 (184)
T ss_dssp             EEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEEST----TSCEEEEEECCSCCCEESCSEEEECTTSCEEEEE
T ss_pred             EEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEECC----cCcEEEEEEecCCceeecCCCcEEcCCCcEEEEE
Confidence            68999998876532     356665  588999999999982    3467889999999888777777788999999999


Q ss_pred             EeeeCC-CcEEEEc-----Cee-ee--------------cceEEEEecC-CCCceeE--EEEcccCCCCC
Q psy12134         77 NVYANP-PAKRFDE-----GTR-FD--------------EGTVTAKVLQ-PFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        77 ~~~~~p-~~~~~~~-----~~~-~~--------------~~~l~i~~~~-~~d~g~y--~~~n~~g~~~~  122 (139)
                      .+.+.| ++.+.|.     +.. ..              ...|.|..+. .+|.|.|  .|.|.+|....
T Consensus       106 ~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~  175 (184)
T 3b5h_A          106 KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA  175 (184)
T ss_dssp             ECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEE
T ss_pred             EECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceE
Confidence            999999 7888882     222 10              1278999999 8999999  88999887553

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.69  E-value=1.3e-16  Score=116.74  Aligned_cols=117  Identities=10%  Similarity=0.026  Sum_probs=92.9

Q ss_pred             eEEEECCEEeeec----------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecC--ce
Q psy12134          2 LVIFFSKIELLYN----------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK--QW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~--~~   63 (139)
                      ++|++++..+...                ...|.|.+++.+|+|.|+|.|.|.    .+..+.|.|..+|.+...+  ..
T Consensus       260 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~  335 (527)
T 3qs9_E          260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSED  335 (527)
T ss_dssp             EEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE----EEEEEEEEEC--CEEECCCSCCE
T ss_pred             EEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC----CCceEEEEEEccCccccccCccc
Confidence            7899998764321                245999999999999999999987    5788899999988776443  34


Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      ..+..|+.+.|.|.+.+.|+|.+.|  ++..+        ....|.|..+..+|.|.|  .|.|..|....
T Consensus       336 ~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~  406 (527)
T 3qs9_E          336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK  406 (527)
T ss_dssp             ECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEE
T ss_pred             EEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEE
Confidence            5678899999999999999999988  44432        245799999999999999  88999887654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.69  E-value=2.6e-16  Score=100.87  Aligned_cols=120  Identities=15%  Similarity=0.149  Sum_probs=90.4

Q ss_pred             eEEEECCEEee----------ecCCeEEEcccCCCCCEEEEEEEEcCCCCce--eeeEEEEEe-------cCCeEEecCc
Q psy12134          2 LVIFFSKIELL----------YNRESLDLDRVTLKLAGLYQCIASNNIGEST--SKNFIVNVI-------YPPEVSVEKQ   62 (139)
Q Consensus         2 ~~W~~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~--s~~~~l~v~-------~~p~~~~~~~   62 (139)
                      +.|++++..+.          ..+..|.|.+++.+|+|.|+|.+.|..+...  ...+.+.+.       .+|.+.....
T Consensus        42 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  121 (201)
T 3s97_C           42 YRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK  121 (201)
T ss_dssp             EEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECC
T ss_pred             EEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCC
Confidence            78999886653          1347899999999999999999998764432  234444443       3455554444


Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ...+..|+.+.|.|.+.+.|++.+.|  ++..+        ....|.|..+..+|.|.|  .+.|.+|...
T Consensus       122 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  192 (201)
T 3s97_C          122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDK  192 (201)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCChhhCEEEEEEEEecCCcee
Confidence            66778899999999999999999988  33321        346899999999999999  7888888654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.69  E-value=6.2e-17  Score=104.37  Aligned_cols=106  Identities=18%  Similarity=0.270  Sum_probs=84.7

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCC-ceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEe-eeCCCcEEEE--cC
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKRFD--EG   90 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~-~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~--~~   90 (139)
                      ...|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..+|.+........+..|+.+.|.|.+ .+.|.+.+.|  ++
T Consensus        67 ~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~  146 (209)
T 1nbq_A           67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDG  146 (209)
T ss_dssp             TTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETT
T ss_pred             ccEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECC
Confidence            378999999999999999999998653 2467788888888876543334456789999999997 8999998888  32


Q ss_pred             eee-------------------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         91 TRF-------------------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        91 ~~~-------------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      ..+                   ....|.|..+..+|.|.|  .+.|..|..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          147 IVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             CCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             eeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence            221                   235799999999999999  889999887

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.69  E-value=1.1e-15  Score=101.91  Aligned_cols=113  Identities=14%  Similarity=0.136  Sum_probs=84.3

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEec---CCeEEecCceEeeCC
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIY---PPEVSVEKQWIHTAP   68 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~~---~p~~~~~~~~~~~~~   68 (139)
                      +.|+|++..+..         ....|.|.+++.+|+|.|+|.+.|..+ ...++.+.|.|..   +|.+...+. ..+.+
T Consensus        37 ~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~-~~v~~  115 (242)
T 1p6f_A           37 YQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVIS  115 (242)
T ss_dssp             EEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESC-SEEET
T ss_pred             EEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCC-CccCC
Confidence            689999987642         236799999999999999999988643 2246778888874   566665553 35678


Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      |++++|.|.+.+.+ +.+.|  ++...        ....|.|..+..+|.|.|  .+.|.
T Consensus       116 G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~  174 (242)
T 1p6f_A          116 GEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN  174 (242)
T ss_dssp             TCEEEEEEECTTSC-SEEEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEE
T ss_pred             CCcEEEEEecCCCC-CEEEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECC
Confidence            99999999998654 46655  43321        245799999999999999  55554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.68  E-value=1.1e-15  Score=101.67  Aligned_cols=119  Identities=9%  Similarity=0.042  Sum_probs=92.6

Q ss_pred             eEEEECCEEeeec--CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec---CCeEEecCceEeeCCCCeEEEEE
Q psy12134          2 LVIFFSKIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIIC   76 (139)
Q Consensus         2 ~~W~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C   76 (139)
                      +.|++++..+...  ...|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..   +|.+...+ ...+..|+.+.|.|
T Consensus       115 v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C  192 (262)
T 3rjd_A          115 VLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRY-TSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSC  192 (262)
T ss_dssp             EEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEESSSEE-EEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEE
T ss_pred             EEEEECCccccccCCCCeEEEEECChhhCEEEEEEEeCCCCc-cccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEe
Confidence            6899999887653  678999999999999999999998855 57888888875   45555544 34567899999999


Q ss_pred             EeeeCCC-cE----EEE--cCeee----ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         77 NVYANPP-AK----RFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        77 ~~~~~p~-~~----~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      .+.+.|+ +.    +.|  ++..+    ....|.|..+..+|.|.|  .+.|..|+...
T Consensus       193 ~~~~~p~~p~~~~~~~w~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~  251 (262)
T 3rjd_A          193 ETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLK  251 (262)
T ss_dssp             ECCCCCC-----EEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEEETTSSCEE
T ss_pred             EcccCCCCCCccEEEEEEeCCcEecccCCCceEEEEEechhhCeEEEEEEEcccCceEE
Confidence            9999886 43    334  44432    335789999999999999  88999997543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.68  E-value=1.5e-16  Score=102.82  Aligned_cols=121  Identities=15%  Similarity=0.182  Sum_probs=91.1

Q ss_pred             eEEEECCEEeeec------------CCe-----EEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC-CeEEecCce
Q psy12134          2 LVIFFSKIELLYN------------RES-----LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP-PEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~-----L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~-p~~~~~~~~   63 (139)
                      +.|++++..+...            .+.     |.|.+++..|+|.|+|.+.|..+...+..+.|.|... +.+...+..
T Consensus        41 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~  120 (212)
T 2v9r_A           41 IEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD  120 (212)
T ss_dssp             EEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCC
T ss_pred             EEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCc
Confidence            7899999876421            223     3445678999999999999988764466778888763 334444455


Q ss_pred             EeeCCCCeEEEEEEe-eeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         64 IHTAPDMRAEIICNV-YANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~-~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      ..+..|+.+.|.|.+ .+.|.+.+.|  ++..         ...+.|.|..+..+|.|.|  .+.|..|....
T Consensus       121 ~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s  193 (212)
T 2v9r_A          121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERES  193 (212)
T ss_dssp             EEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             eEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceec
Confidence            677889999999998 8999999988  3333         2346899999999999999  78898887543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.67  E-value=7.4e-16  Score=105.12  Aligned_cols=119  Identities=14%  Similarity=0.117  Sum_probs=90.8

Q ss_pred             eEEEECCEEeeecC----------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec------------------
Q psy12134          2 LVIFFSKIELLYNR----------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY------------------   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~------------------   53 (139)
                      +.|++++..+....          ..|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..                  
T Consensus       140 i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~  218 (317)
T 2y25_A          140 VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAE  218 (317)
T ss_dssp             EEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEECHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCce-EEEEEEEeeeeccccchhhcccCCcccCc
Confidence            68999987764321          34999999999999999999998876 45666666531                  


Q ss_pred             --CCeEE-ecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------ec--c---eEEEEecCCCCceeE--EE
Q psy12134         54 --PPEVS-VEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------DE--G---TVTAKVLQPFSERTL--SV  113 (139)
Q Consensus        54 --~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------~~--~---~l~i~~~~~~d~g~y--~~  113 (139)
                        .|.+. ..+....+..|+.+.|.|.+.+.|.+.+.|  ++..+        ..  +   .|.|..+..+|.|.|  .|
T Consensus       219 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  298 (317)
T 2y25_A          219 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV  298 (317)
T ss_dssp             TTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEE
T ss_pred             CCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEE
Confidence              34444 334556778999999999999999999988  33321        11  2   799999999999999  88


Q ss_pred             EcccCCCC
Q psy12134        114 QDKIGPGP  121 (139)
Q Consensus       114 ~n~~g~~~  121 (139)
                      .|..|...
T Consensus       299 ~N~~g~~~  306 (317)
T 2y25_A          299 KNKYGSET  306 (317)
T ss_dssp             EETTEEEE
T ss_pred             EeCCCeEE
Confidence            99988753

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.66  E-value=4e-17  Score=111.35  Aligned_cols=131  Identities=19%  Similarity=0.203  Sum_probs=96.1

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecCCeEEecC-ceEeeCC
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEK-QWIHTAP   68 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~p~~~~~~-~~~~~~~   68 (139)
                      ++|++++.++...           .+.|.|..+..+|+|.|+|.+.|..+.. .+..+.|.|..+|.+...+ ....+..
T Consensus       147 i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~  226 (308)
T 4fom_A          147 IDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVG  226 (308)
T ss_dssp             EEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETT
T ss_pred             EEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeec
Confidence            7899998776432           1468999999999999999999987553 4667788888888876433 3345567


Q ss_pred             CCeEEEEEEeeeCCCcE-EEEc--Cee------eecc-eEEEEecCCCCceeE--EEEcccCCCCCCCCcceeeeeCCC
Q psy12134         69 DMRAEIICNVYANPPAK-RFDE--GTR------FDEG-TVTAKVLQPFSERTL--SVQDKIGPGPDSNLRPSAYMADAP  135 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~-~~~~--~~~------~~~~-~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~~~~~~~~~  135 (139)
                      |+.+.|.|.+.+.|+|. +.|.  +..      ...+ .+.|..+..+|.|.|  .|.|.+|....   ...+.+.++|
T Consensus       227 g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~---~~~l~V~~~P  302 (308)
T 4fom_A          227 RKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSD---QKVIYISDPP  302 (308)
T ss_dssp             CCSCEEECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEE---EEECCEECCC
T ss_pred             cccEEEEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEE---EEEEEEEcCC
Confidence            89999999999999884 6782  222      1223 455678899999999  89999997643   3445555555

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.66  E-value=2.9e-15  Score=96.70  Aligned_cols=109  Identities=15%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             eEEEECCEEee-----------ecCCeEEEcccCCCCCEEEEEEEEcCC----CCceeeeEEEEEec---CCeEEecCce
Q psy12134          2 LVIFFSKIELL-----------YNRESLDLDRVTLKLAGLYQCIASNNI----GESTSKNFIVNVIY---PPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~----~~~~s~~~~l~v~~---~p~~~~~~~~   63 (139)
                      +.|+|+|..+.           .....|.|.+++.+|+|.|+|.+.|..    ....+..+.|.|..   +|.+...+. 
T Consensus        38 ~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-  116 (201)
T 1nkr_A           38 FLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-  116 (201)
T ss_dssp             EEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-
T ss_pred             EEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC-
Confidence            78999986542           124679999999999999999998642    12246777888875   466665554 


Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeEEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      ..+.+|++++|.|.+.+ +++.+.|  ++...             ....|.|.++.  |.|.|.|.
T Consensus       117 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~  179 (201)
T 1nkr_A          117 PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCF  179 (201)
T ss_dssp             SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEE
T ss_pred             CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEE
Confidence            36789999999999986 4566766  33221             14578899998  99999444

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.66  E-value=1.7e-15  Score=98.64  Aligned_cols=119  Identities=13%  Similarity=0.068  Sum_probs=81.3

Q ss_pred             eEEEEC---CEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec--CCeEEecC-ceEeeCC
Q psy12134          2 LVIFFS---KIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEK-QWIHTAP   68 (139)
Q Consensus         2 ~~W~~~---~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~--~p~~~~~~-~~~~~~~   68 (139)
                      ++|+++   +..+..       ....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..  +|.+...+ ....+..
T Consensus        40 v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~  119 (213)
T 2x1w_L           40 VSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSV  119 (213)
T ss_dssp             EEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEET
T ss_pred             EEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcC
Confidence            789885   433321       2467999999999999999999985544344557777754  33344333 3347789


Q ss_pred             CCeEEEEEEeeeCCC--cEEEE--cCee-----e---------------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         69 DMRAEIICNVYANPP--AKRFD--EGTR-----F---------------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        69 g~~~~l~C~~~~~p~--~~~~~--~~~~-----~---------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      |+++.|.|.+.+.|.  +.+.|  ++..     .               ....|.|.++..+|.|.|  .|.|..|..
T Consensus       120 G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~  197 (213)
T 2x1w_L          120 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK  197 (213)
T ss_dssp             TCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             CCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE
Confidence            999999999998654  45778  2211     0               012488999999999999  778887765

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.66  E-value=1.1e-15  Score=101.07  Aligned_cols=105  Identities=11%  Similarity=0.081  Sum_probs=80.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc----eeeeEEEEEecC---CeEE-ecCceEeeCCCCeEEEEEEeeeCCCcEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES----TSKNFIVNVIYP---PEVS-VEKQWIHTAPDMRAEIICNVYANPPAKRF   87 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~----~s~~~~l~v~~~---p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~~~   87 (139)
                      ..|.|.+++.+|+|.|+|.+.|..+..    .+..+.|.|..+   |.+. ..+....+.+|+.+.|.|.+.+.|.|.+.
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~  169 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT  169 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEE
T ss_pred             ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeE
Confidence            489999999999999999999977642    245788888764   3333 33445677789999999999999988888


Q ss_pred             EcCee--------------------------------e---ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         88 DEGTR--------------------------------F---DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        88 ~~~~~--------------------------------~---~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      |....                                .   ....|.|..+..+|.|.|  .|.|.+|..
T Consensus       170 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          170 WYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL  239 (250)
T ss_dssp             EEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred             EEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcccc
Confidence            82111                                0   225899999999999999  888966643

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.66  E-value=1.1e-15  Score=103.34  Aligned_cols=120  Identities=14%  Similarity=0.137  Sum_probs=92.4

Q ss_pred             eEEEECCE-Eeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec----CCeEEecCceEeeCCC
Q psy12134          2 LVIFFSKI-ELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY----PPEVSVEKQWIHTAPD   69 (139)
Q Consensus         2 ~~W~~~~~-~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~----~p~~~~~~~~~~~~~g   69 (139)
                      +.|+++++ .+..       ....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..    +|.+...+....+..|
T Consensus       122 v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g  201 (292)
T 4dkd_C          122 VSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRG  201 (292)
T ss_dssp             EEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSS
T ss_pred             EEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecC
Confidence            78999743 3321       2355999999999999999999988776556789999987    8888777766666789


Q ss_pred             CeEEEEEEeeeCCCcE-EEE--cCeee--------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         70 MRAEIICNVYANPPAK-RFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        70 ~~~~l~C~~~~~p~~~-~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.+.|.|.+.+.|++. .+|  ++...              ....|.|..+..+|.|.|  .|.|.+|...
T Consensus       202 ~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  272 (292)
T 4dkd_C          202 EAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHS  272 (292)
T ss_dssp             SCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEE
T ss_pred             CCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCce
Confidence            9999999999877644 556  22211              123789999999999999  7889888754

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.66  E-value=2.3e-16  Score=108.60  Aligned_cols=131  Identities=14%  Similarity=0.147  Sum_probs=98.4

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC----CeEEe-cCceEe
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP----PEVSV-EKQWIH   65 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~----p~~~~-~~~~~~   65 (139)
                      +.|++++..+...           ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|...    |.+.. .+....
T Consensus       155 v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~p~~~~~~~~~~~  233 (334)
T 1ry7_B          155 ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQT  233 (334)
T ss_dssp             EECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEE-EEEEEEEEEECCCCSSCBCCTTCSCCEE
T ss_pred             EEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCC-EEEEEEEEEecCCCCCCceEecCCCceE
Confidence            7899998776432           358999999999999999999999877 577888888763    33332 234556


Q ss_pred             eCCCCeEEEEEEeeeCCCcEEEEcC------eee-----------e----------cceEEEEecCCCCceeE--EEEcc
Q psy12134         66 TAPDMRAEIICNVYANPPAKRFDEG------TRF-----------D----------EGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~p~~~~~~~~------~~~-----------~----------~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      +..|+.+.|.|.+.+.|.+.+.|..      ..+           .          ...|.|..+..+|.|.|  .|.|.
T Consensus       234 ~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  313 (334)
T 1ry7_B          234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNS  313 (334)
T ss_dssp             EESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEES
T ss_pred             EeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCC
Confidence            7789999999999999999988832      211           0          02699999999999999  88999


Q ss_pred             cCCCCCCCCcceeeeeCCCC
Q psy12134        117 IGPGPDSNLRPSAYMADAPP  136 (139)
Q Consensus       117 ~g~~~~~~~~~~~~~~~~~~  136 (139)
                      +|....   ...+.+.++|+
T Consensus       314 ~G~~~~---~~~l~V~~~~~  330 (334)
T 1ry7_B          314 IGFSHH---SAWLVVLPAEE  330 (334)
T ss_dssp             SCCEEE---EEEEEEECSCC
T ss_pred             CCeEEE---EEEEEEEECCC
Confidence            887543   34455555444

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.65  E-value=3e-16  Score=108.69  Aligned_cols=122  Identities=16%  Similarity=0.306  Sum_probs=71.5

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCC-CCc--eeeeEEEEEec------CCeEEecCceE--
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNI-GES--TSKNFIVNVIY------PPEVSVEKQWI--   64 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~-~~~--~s~~~~l~v~~------~p~~~~~~~~~--   64 (139)
                      +.|+|++.++..      .+..|.|.+++.+|+|.|+|.+.|.. +..  .+..+.|.|..      +|.+.......  
T Consensus       157 v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~  236 (349)
T 4dep_C          157 ITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVY  236 (349)
T ss_dssp             EEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC--------
T ss_pred             EEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeE
Confidence            789999988754      24679999999999999999999987 442  36777777776      56554433222  


Q ss_pred             eeCCCCeEEEEEEee----eCCCcEEEE--cCeeee----------------------cceEEEEecCCCCc-eeE--EE
Q psy12134         65 HTAPDMRAEIICNVY----ANPPAKRFD--EGTRFD----------------------EGTVTAKVLQPFSE-RTL--SV  113 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~----~~p~~~~~~--~~~~~~----------------------~~~l~i~~~~~~d~-g~y--~~  113 (139)
                      .+..|+.+.|.|.+.    +.|.+.+.|  ++..+.                      ...|.|..+..+|. |.|  .|
T Consensus       237 ~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a  316 (349)
T 4dep_C          237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA  316 (349)
T ss_dssp             --------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEE
T ss_pred             EEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEE
Confidence            667899999999999    457888888  332211                      12388999999999 999  88


Q ss_pred             EcccCCCCCC
Q psy12134        114 QDKIGPGPDS  123 (139)
Q Consensus       114 ~n~~g~~~~~  123 (139)
                      .|.+|....+
T Consensus       317 ~N~~G~~~~~  326 (349)
T 4dep_C          317 RSAKGEVAKA  326 (349)
T ss_dssp             ECSSCEEEEE
T ss_pred             EcCCCcEEEE
Confidence            9998876654

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.65  E-value=1.9e-15  Score=96.06  Aligned_cols=110  Identities=8%  Similarity=0.012  Sum_probs=79.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCe--
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGT--   91 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~--   91 (139)
                      ..|.|.+++.+|+|.|+|.+.|..     ..+.|.|..   +.. +....+..|+++.|.|.+.+.|.+.+.|  ++.  
T Consensus        68 ~~L~i~~v~~~D~G~Y~C~~~~~~-----~~~~l~V~~---~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~  138 (184)
T 2ny1_B           68 FPLIIKNLKIEDSDTYICEVEDQK-----EEVQLLVFG---LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN  138 (184)
T ss_dssp             CCEEECSCCGGGCEEEEEEETTEE-----EEEEEEEEE---EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             EEEEEecCCHHHCEEEEEEEEcCC-----CcEEEEEEE---ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc
Confidence            449999999999999999998753     345666663   222 2233567899999999999999999988  322  


Q ss_pred             eeecceEEEEecCCCCceeE--EEEcccCCCCCCCCcceeeeeCCCCC
Q psy12134         92 RFDEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLRPSAYMADAPPT  137 (139)
Q Consensus        92 ~~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~~~~~~~~~~~  137 (139)
                      ......|.|.++..+|.|.|  .+.|..|..   .....+.+-+.|..
T Consensus       139 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~---~~~~~l~V~~~p~~  183 (184)
T 2ny1_B          139 IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV---EFKIDIVVLAFQKA  183 (184)
T ss_dssp             EEESSEEEESSCCGGGCEEEEEEEEETTEEE---EEEEEEEEECCCC-
T ss_pred             ccCceEEEEecCCcCCCeEEEEEEEECCceE---EEEEEEEEEecCCC
Confidence            23567899999999999999  566654433   33445555666543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.65  E-value=6.1e-15  Score=98.06  Aligned_cols=114  Identities=11%  Similarity=0.008  Sum_probs=90.4

Q ss_pred             CeEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEe-e
Q psy12134          1 MLVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-Y   79 (139)
Q Consensus         1 ~~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~   79 (139)
                      .+.|+|++..+...+..|.|.+++.+|+|.|+|.+.|..+   +..+.|.|..++...... ...+.+|+.+.|.|.+ .
T Consensus        33 ~~~W~~~g~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~---s~~~~l~v~~~~~~~~~~-~~~~~~g~~v~l~C~~~~  108 (262)
T 3rjd_A           33 STQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGR---SDPIQLEIHRGWLLLQVS-SRVFTEGEPLALRCHAWK  108 (262)
T ss_dssp             CEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEESSSCC---CCCEEEEEECSSEEEEES-CSEEETTSCEEEEEEEGG
T ss_pred             eEEEEECCEEeeccCCeEEEecCCcccCeEEEEEEecCCc---cccEEEEEeccceEecCC-CeEEecCCeEEEEEEccC
Confidence            3789999999888889999999999999999999987653   467888888877554333 3456789999999999 6


Q ss_pred             eCCCcEEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         80 ANPPAKRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        80 ~~p~~~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      +.|.+.+.|  ++...    ....|.|..+..+|.|.|  .+.|..|
T Consensus       109 ~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~  155 (262)
T 3rjd_A          109 DKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR  155 (262)
T ss_dssp             GCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEESSSE
T ss_pred             CCCCceEEEEECCccccccCCCCeEEEEECChhhCEEEEEEEeCCCC
Confidence            677778877  44432    256799999999999999  6666653

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.65  E-value=4.7e-15  Score=101.62  Aligned_cols=116  Identities=16%  Similarity=0.138  Sum_probs=85.2

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCC----CceeeeEEEEEec---CCeEEecCceEeeCC
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIG----ESTSKNFIVNVIY---PPEVSVEKQWIHTAP   68 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~----~~~s~~~~l~v~~---~p~~~~~~~~~~~~~   68 (139)
                      +.|+|++..+..      ....|.|.+++.+|+|.|+|.+.|..+    ...+..+.|.|..   +|.+...+... +.+
T Consensus        54 ~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~  132 (316)
T 3vh8_G           54 FMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKS  132 (316)
T ss_dssp             EEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EET
T ss_pred             EEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCC
Confidence            789999876533      357899999999999999999986432    1245677888864   45666555443 678


Q ss_pred             CCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         69 DMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |+++.|.|.+.+. ++.+.|  ++...             ....|.|..+..+|.|.|  .+.|..|.
T Consensus       133 G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  199 (316)
T 3vh8_G          133 GERVILQCWSDIM-FEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTP  199 (316)
T ss_dssp             TCCEEEEEEESSC-CSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred             CCeEEEEEcCCCC-CcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCC
Confidence            9999999999654 445544  33221             345789999999999999  77888775

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.65  E-value=1.1e-15  Score=105.01  Aligned_cols=104  Identities=21%  Similarity=0.235  Sum_probs=85.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEec-CceEeeCCCCeEEEEEEeeeCCCcE-EEE--cCe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE-KQWIHTAPDMRAEIICNVYANPPAK-RFD--EGT   91 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~-~~~--~~~   91 (139)
                      ..|.|..+..+|+|.|+|.+.|..+. .+..+.|.|.++|.+... .....+..|+.+.|.|.+.+.|++. +.|  ++.
T Consensus       194 ~~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~  272 (331)
T 3u83_A          194 SRYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNG  272 (331)
T ss_dssp             EEEEECCCGGGTTCEEEEEEEETTEE-EEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTB
T ss_pred             EEEEEEeccccCCCEEEEEEecCCCc-ceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCC
Confidence            45788888999999999999999876 678899999998887643 3334567899999999999999987 888  332


Q ss_pred             e------eecceEEEE-ecCCCCceeE--EEEcccCCC
Q psy12134         92 R------FDEGTVTAK-VLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        92 ~------~~~~~l~i~-~~~~~d~g~y--~~~n~~g~~  120 (139)
                      .      ...+.|.|. .+..+|.|.|  .|.|.+|..
T Consensus       273 ~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~  310 (331)
T 3u83_A          273 SLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTR  310 (331)
T ss_dssp             SCCTTEEEETTEEEECSCCCGGGCEEEEEEEEETTEEE
T ss_pred             cccccceecCcEEEEeCCCccccCeEEEEEEEeccccc
Confidence            2      356789999 8999999999  889998875

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.64  E-value=7.6e-16  Score=106.24  Aligned_cols=121  Identities=9%  Similarity=-0.021  Sum_probs=89.1

Q ss_pred             eEEEECCEEeee-----cCCeEEEcccCCCCCE-EEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEE
Q psy12134          2 LVIFFSKIELLY-----NRESLDLDRVTLKLAG-LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII   75 (139)
Q Consensus         2 ~~W~~~~~~~~~-----~~~~L~i~~v~~~d~G-~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~   75 (139)
                      +.|+|++..+..     ....|.|.+++.+|+| .|+|.+.|..|......+.+.+..+|.+........+..|+.+.|.
T Consensus        70 v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~  149 (329)
T 3oq3_B           70 VNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY  149 (329)
T ss_dssp             EEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEE
T ss_pred             eEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEE
Confidence            789999876543     3688999999999999 9999999998774333333344445544333333345679999999


Q ss_pred             EEeeeCC-CcEEEE--cCeee---------ecceEEEEecCCCCceeE--EEEcc--cCCCCC
Q psy12134         76 CNVYANP-PAKRFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDK--IGPGPD  122 (139)
Q Consensus        76 C~~~~~p-~~~~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~--~g~~~~  122 (139)
                      |.+.+.| .+.+.|  ++...         ....|.|..+..+|.|.|  .+.|.  .|....
T Consensus       150 C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~  212 (329)
T 3oq3_B          150 CGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDI  212 (329)
T ss_dssp             CCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCE
T ss_pred             eccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCcee
Confidence            9999999 888888  33332         246899999999999999  67776  665543

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.64  E-value=6.8e-15  Score=94.72  Aligned_cols=104  Identities=13%  Similarity=0.124  Sum_probs=78.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcCee--e
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTR--F   93 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~~~--~   93 (139)
                      ..|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..++.... .....+..|+.+.|.|.+.+.|.+.+.|....  .
T Consensus        67 ~~L~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~p~-~~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~  144 (202)
T 3bp6_B           67 ALFHIPSVQVRDSGQYRCLVICGAAW-DYKYLTVKVKASYMRID-TRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPA  144 (202)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCCCEE-EEEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCC
T ss_pred             eEEEECCCCHHHCcEEEEEEEeCCCc-ceEEEEEEecCCCCccc-EEEEecCCCCeEEEEEEccccCCceEEEEeCCCCc
Confidence            67999999999999999999998776 47788888886542110 11124567999999999999999999993221  1


Q ss_pred             -------ec---ceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         94 -------DE---GTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        94 -------~~---~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                             ..   ..+.+..+..+|.|.|  .|.|.+|...
T Consensus       145 ~~~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~  184 (202)
T 3bp6_B          145 NTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKEL  184 (202)
T ss_dssp             EEEEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEE
T ss_pred             cCceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccc
Confidence                   11   3456778889999999  7889988654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.64  E-value=3.3e-16  Score=108.12  Aligned_cols=122  Identities=14%  Similarity=0.179  Sum_probs=94.5

Q ss_pred             eEEEECCEEeeec---------CCeEEEcccCCCCCEEEEEEEEcCCCC---ceeeeEEEEEec-----CCeEEecCceE
Q psy12134          2 LVIFFSKIELLYN---------RESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIY-----PPEVSVEKQWI   64 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~~~~---~~s~~~~l~v~~-----~p~~~~~~~~~   64 (139)
                      +.|+|++..+...         ...|.|.+++.+|+|.|+|.+.|..+.   ..+..+.|.|..     +|.+...+...
T Consensus       157 v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~  236 (339)
T 3o4o_C          157 IQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTI  236 (339)
T ss_dssp             BCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCC
T ss_pred             EEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCcee
Confidence            6899998776432         257999999999999999999998764   246778888874     45665555556


Q ss_pred             eeCCCCeEEEEEEe---eeCC-CcEEEE--cCeee------------------ecc------eEEEEecCCCCc-eeE--
Q psy12134         65 HTAPDMRAEIICNV---YANP-PAKRFD--EGTRF------------------DEG------TVTAKVLQPFSE-RTL--  111 (139)
Q Consensus        65 ~~~~g~~~~l~C~~---~~~p-~~~~~~--~~~~~------------------~~~------~l~i~~~~~~d~-g~y--  111 (139)
                      .+..|+.+.|.|.+   .+.| ++.+.|  ++..+                  ..+      .|.|..+..+|. |.|  
T Consensus       237 ~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C  316 (339)
T 3o4o_C          237 SASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKC  316 (339)
T ss_dssp             CCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEE
T ss_pred             EeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEE
Confidence            77889999999999   8888 777788  32210                  122      699999999997 999  


Q ss_pred             EEEcccCCCCCC
Q psy12134        112 SVQDKIGPGPDS  123 (139)
Q Consensus       112 ~~~n~~g~~~~~  123 (139)
                      .|.|.+|+....
T Consensus       317 ~a~N~~G~~~~~  328 (339)
T 3o4o_C          317 VVHNTLSFQTLR  328 (339)
T ss_dssp             EEEETTEEECCB
T ss_pred             EEEeccCceEEE
Confidence            899999987754

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.64  E-value=6.7e-16  Score=104.27  Aligned_cols=117  Identities=12%  Similarity=0.192  Sum_probs=90.9

Q ss_pred             eEEEE-CCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCC
Q psy12134          2 LVIFF-SKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDM   70 (139)
Q Consensus         2 ~~W~~-~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~   70 (139)
                      +.|++ ++..+...          ...|.|.+++.+|+|.|+|.+.|..|...+..+.|.|..+|.+...+....+..|+
T Consensus        35 v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~  114 (291)
T 2wim_A           35 IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGE  114 (291)
T ss_dssp             EECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTS
T ss_pred             eEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCC
Confidence            68999 55443221          24799999999999999999999888765778889998888776555666778999


Q ss_pred             eEEEEEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccC
Q psy12134         71 RAEIICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        71 ~~~l~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      .+.|.|.+.+.|.+.+.|  ++..           ...+.|.|..+..+|.|.|  .+.|..+
T Consensus       115 ~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~  177 (291)
T 2wim_A          115 DAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR  177 (291)
T ss_dssp             CEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTT
T ss_pred             CEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCC
Confidence            999999999999998888  2221           1245789999999999999  5556543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.63  E-value=6.4e-15  Score=112.09  Aligned_cols=119  Identities=14%  Similarity=0.178  Sum_probs=96.7

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe---cCCeEEecCceEeeCCCCeEEEEEEe
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWIHTAPDMRAEIICNV   78 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~   78 (139)
                      +.|+|++..+......|.|.+++.+|+|.|+|.+.|..+. ....+.|.|.   .+|.+........+..|+.+.|.|.+
T Consensus       375 v~W~k~g~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~  453 (816)
T 3dmk_A          375 VSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRES-AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVA  453 (816)
T ss_dssp             EEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCE-EEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEE
T ss_pred             EEEEECCEECCCCCCEEEEcCCCHHHCEEEEEEEECCCCc-EEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEE
Confidence            7899999998888889999999999999999999998876 4666677763   56777666666678899999999999


Q ss_pred             eeCCCcEEEE--cCeeee-----------------cceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         79 YANPPAKRFD--EGTRFD-----------------EGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        79 ~~~p~~~~~~--~~~~~~-----------------~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .+.|.+.+.|  ++..+.                 ...|.|..+..+|.|.|  .+.|..|...
T Consensus       454 ~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  517 (816)
T 3dmk_A          454 GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE  517 (816)
T ss_dssp             ECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEE
T ss_pred             ecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEE
Confidence            9999999988  333311                 12488999999999999  7788877643

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.62  E-value=4.5e-14  Score=91.87  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=73.8

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--c-Ceee
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--E-GTRF   93 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~-~~~~   93 (139)
                      .|.|.+++.+|+|.|+|.+.| .+. ....+.|.|..++..........+..|+.+.|.|.+.+.|.+.+.|  + +...
T Consensus        81 ~L~I~~v~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~  158 (222)
T 3sbw_C           81 ALQITDVKLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVL  158 (222)
T ss_dssp             EEEESSCCGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEE
T ss_pred             EEEEcCcccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCcee
Confidence            799999999999999999998 443 5677888888765432211112557899999999999999999988  3 3221


Q ss_pred             e-----------cceE---EEEecCCCCceeE--EEEcccCCCC
Q psy12134         94 D-----------EGTV---TAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        94 ~-----------~~~l---~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .           .+.+   ....+...|.|.|  .|.|.+|...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~  202 (222)
T 3sbw_C          159 SGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEEN  202 (222)
T ss_dssp             CCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEE
T ss_pred             cCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCcccee
Confidence            1           1112   2224567899999  8889888654

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.62  E-value=7.5e-16  Score=100.05  Aligned_cols=111  Identities=14%  Similarity=0.160  Sum_probs=78.2

Q ss_pred             eEEEECCEEeee---cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec-------------------------
Q psy12134          2 LVIFFSKIELLY---NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-------------------------   53 (139)
Q Consensus         2 ~~W~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~-------------------------   53 (139)
                      +.|+|+|..+..   ....|.|.+++.+|+|.|+|.+.+..    +..+.|.|..                         
T Consensus        32 i~W~k~g~~l~~~~~~~~~L~i~~v~~~DsG~Y~C~~~~~~----s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (204)
T 1sy6_A           32 ITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNK----SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDG  107 (204)
T ss_dssp             EEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESSSSC----CCCEEEEEEC-------------------------
T ss_pred             EEEEECCEECCCCCCCCCeEEeCCCCcCCCEEEEEEecCCC----CeeEEEEEEEecccccccccccccccccccccccc
Confidence            789999988864   45789999999999999999975532    3335555541                         


Q ss_pred             ------CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEec-CCCCceeE--
Q psy12134         54 ------PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVL-QPFSERTL--  111 (139)
Q Consensus        54 ------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~-~~~d~g~y--  111 (139)
                            .+.+...+. ....+|+++.|.|.  +.|.+.+.|  ++..+           ..+.|.|..+ ..+|.|.|  
T Consensus       108 ~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C  184 (204)
T 1sy6_A          108 SDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC  184 (204)
T ss_dssp             -----------CCCC-EEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEE
T ss_pred             ccccccccceecCCc-eeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEE
Confidence                  111222222 12237999999999  678788878  33321           3568999999 99999999  


Q ss_pred             EEEcccCC
Q psy12134        112 SVQDKIGP  119 (139)
Q Consensus       112 ~~~n~~g~  119 (139)
                      .|.|..|.
T Consensus       185 ~A~N~~g~  192 (204)
T 1sy6_A          185 YPRGSKPE  192 (204)
T ss_dssp             EETTSCGG
T ss_pred             EeccCCCC
Confidence            67888874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.62  E-value=1.6e-16  Score=110.54  Aligned_cols=115  Identities=18%  Similarity=0.198  Sum_probs=90.4

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCCCCCE-EEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeE
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTLKLAG-LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA   72 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G-~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~   72 (139)
                      +.|++++..+..        ..+.|.|.+++.+|+| .|+|.+.|..|. .+..+.|.|..+|.+.    ...+..|+.+
T Consensus       190 i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~-~~~~~~l~V~~~P~i~----~~~~~~g~~v  264 (347)
T 2ifg_A          190 AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGR-AEVSVQVNVSFPASVQ----LHTAVEMHHW  264 (347)
T ss_dssp             CCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEE-CCEEECCCCBEEEEEE----ECCCEESSSE
T ss_pred             EEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCCC-EEEEEEEEEcCCCeee----eccCccCceE
Confidence            679998865321        2478999999999999 999999999877 4778888888888751    1123468999


Q ss_pred             EEEEEeeeCCCcEEEE--cCeee-------------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         73 EIICNVYANPPAKRFD--EGTRF-------------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        73 ~l~C~~~~~p~~~~~~--~~~~~-------------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .|.|.+.+.|.|.+.|  ++...                   ..+.|.|..+..+|.|.|  .|.|.+|...
T Consensus       265 ~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~  336 (347)
T 2ifg_A          265 CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS  336 (347)
T ss_dssp             EEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCcee
Confidence            9999999999999988  33321                   134589999999999999  8899988654

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.62  E-value=5.4e-14  Score=90.39  Aligned_cols=102  Identities=13%  Similarity=0.134  Sum_probs=73.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe---EEecCceEeeCCCC-eEEEEEEeeeC-CCcEEEE--
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE---VSVEKQWIHTAPDM-RAEIICNVYAN-PPAKRFD--   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~---~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~~~~--   88 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+. ....+.|.|..++.   +....  .....|. .+.|.|.+.+. |.+.+.|  
T Consensus        70 ~sL~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~  146 (193)
T 2if7_A           70 YSLQLSNLKMEDTGSYRAQISTKTSA-KLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEA  146 (193)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEE
T ss_pred             eEEEECCCCcccCceEEEEEEecCCC-eEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEe
Confidence            67999999999999999999998766 35678888876542   22222  1223465 89999999985 4778888  


Q ss_pred             cCeee-ecceEEEEecCCC-CceeE--EEEcccCCC
Q psy12134         89 EGTRF-DEGTVTAKVLQPF-SERTL--SVQDKIGPG  120 (139)
Q Consensus        89 ~~~~~-~~~~l~i~~~~~~-d~g~y--~~~n~~g~~  120 (139)
                      ++..+ ....|.+...... |.|.|  .|.|.+|..
T Consensus       147 ~g~~l~~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          147 LGNTLSSQPNLTVSWDPRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             TTEEEESSSEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred             CCEEcCCCCeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence            44443 3346777655554 89999  788998876

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.62  E-value=2.1e-14  Score=96.48  Aligned_cols=110  Identities=12%  Similarity=0.100  Sum_probs=79.5

Q ss_pred             eEEEECCEEee-----------ecCCeEEEcccCCCCCEEEEEEEEcCC----CCceeeeEEEEEec---CCeEEecCce
Q psy12134          2 LVIFFSKIELL-----------YNRESLDLDRVTLKLAGLYQCIASNNI----GESTSKNFIVNVIY---PPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~----~~~~s~~~~l~v~~---~p~~~~~~~~   63 (139)
                      +.|+|++..+.           .....|.|.+++.+|+|.|+|.+.|..    ....++.+.|.|..   +|.+...+. 
T Consensus        37 ~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-  115 (257)
T 1b6u_A           37 FLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-  115 (257)
T ss_dssp             EEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-
T ss_pred             EEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCC-
Confidence            78999886432           123679999999999999999998642    12246778888875   466665544 


Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeEEEEc
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      ..+.+|++++|.|.+.+.+ +.+.|  ++...             ....|.|.++.  |.|.|.|..
T Consensus       116 ~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a  179 (257)
T 1b6u_A          116 PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFG  179 (257)
T ss_dssp             TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEE
T ss_pred             CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEE
Confidence            3567899999999998765 56666  33321             14578999998  999994443

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.62  E-value=8.7e-15  Score=102.87  Aligned_cols=119  Identities=16%  Similarity=0.120  Sum_probs=93.3

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe------EEecCceEe
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE------VSVEKQWIH   65 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~------~~~~~~~~~   65 (139)
                      +.|+|++..+..          ..+.|.|.+++.+|+|.|+|.+.|..+...+..+.+.|...|.      +...+....
T Consensus       153 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~  232 (403)
T 3laf_A          153 IHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVI  232 (403)
T ss_dssp             EEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEE
T ss_pred             EEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceE
Confidence            789999876531          2478999999999999999999998876556778888887653      233445566


Q ss_pred             eCCCCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         66 TAPDMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      +.+|+.+.|.|.+.+.|++.+.|  ++...          ....|.|..+..+|.|.|  .+.|..|..
T Consensus       233 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  301 (403)
T 3laf_A          233 AIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENI  301 (403)
T ss_dssp             EETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCce
Confidence            77899999999999999999888  33321          235799999999999999  678877654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.61  E-value=2.8e-15  Score=101.39  Aligned_cols=113  Identities=17%  Similarity=0.170  Sum_probs=89.3

Q ss_pred             eEEEECCEEe---eecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEe
Q psy12134          2 LVIFFSKIEL---LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV   78 (139)
Q Consensus         2 ~~W~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~   78 (139)
                      +.|++++..+   ...+..|.|.+++.+|+|.|+|.+.|  |.  +..+.|.|..+|.+........+.+|+.+.|.|.+
T Consensus        40 i~W~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~  115 (290)
T 2o26_X           40 VRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSN--GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPL  115 (290)
T ss_dssp             EEEEEECSSSCEEEECSSEEEETTCCGGGCEEEEEEESS--SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCB
T ss_pred             EEEecCCcceeeecCCCceEEEeccCHHhCeEEEEEeeC--Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcC
Confidence            7899998765   23458999999999999999999999  43  78888999887766555555677789999999999


Q ss_pred             eeCCC-cEEEE---cCeee---------ecceEEEEecCCCCce-eE--EEEcccCC
Q psy12134         79 YANPP-AKRFD---EGTRF---------DEGTVTAKVLQPFSER-TL--SVQDKIGP  119 (139)
Q Consensus        79 ~~~p~-~~~~~---~~~~~---------~~~~l~i~~~~~~d~g-~y--~~~n~~g~  119 (139)
                      .+ |. +.+.|   ++..+         ..+.|.|..+..+|.| .|  .+.|..|.
T Consensus       116 ~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~  171 (290)
T 2o26_X          116 TD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTW  171 (290)
T ss_dssp             SC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEE
T ss_pred             CC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCce
Confidence            95 76 77877   23221         2358999999999999 99  67776444

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.61  E-value=1.2e-14  Score=102.29  Aligned_cols=120  Identities=13%  Similarity=0.219  Sum_probs=88.1

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCCCCce--eeeEEEEEe-------cCCeEE-ecCce
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNIGEST--SKNFIVNVI-------YPPEVS-VEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~--s~~~~l~v~-------~~p~~~-~~~~~   63 (139)
                      +.|++++.++..        ..+.|.|.+++.+|+|.|+|.+.|..+...  .....+.+.       ..|.+. ..+..
T Consensus       135 ~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~  214 (384)
T 3kld_A          135 YAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPET  214 (384)
T ss_dssp             EEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSE
T ss_pred             EEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCc
Confidence            689999877532        246799999999999999999999876531  112222222       234443 33445


Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEEc---Cee--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFDE---GTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~~---~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+..|+.+.|.|.+.+.|.|.+.|.   +..        ...+.|.|.++..+|.|.|  .|.|..|...
T Consensus       215 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  285 (384)
T 3kld_A          215 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNV  285 (384)
T ss_dssp             EEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence            66788999999999999999999882   221        1245799999999999999  8889888654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.61  E-value=5.8e-15  Score=107.38  Aligned_cols=121  Identities=14%  Similarity=0.105  Sum_probs=92.8

Q ss_pred             CeEEEE-CCEEeee-------cCCeEEEcccCCCCCE-EEEEEEEcCCCCceeeeEEEEEe----cCCeEEecCceEeeC
Q psy12134          1 MLVIFF-SKIELLY-------NRESLDLDRVTLKLAG-LYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTA   67 (139)
Q Consensus         1 ~~~W~~-~~~~~~~-------~~~~L~i~~v~~~d~G-~Y~C~~~n~~~~~~s~~~~l~v~----~~p~~~~~~~~~~~~   67 (139)
                      .+.|++ ++..+..       ....|.|.+++.+|+| .|+|.+.|..+...+..+.|.|.    .+|.+...+....+.
T Consensus       145 ~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~  224 (524)
T 2ec8_A          145 NYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLR  224 (524)
T ss_dssp             CEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEE
T ss_pred             eEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEE
Confidence            378998 6655432       3578999999999999 99999999876655668888886    678887777777888


Q ss_pred             CCCeEEEEEEeeeCCCcE-EEE--cCee-----------------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         68 PDMRAEIICNVYANPPAK-RFD--EGTR-----------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~-~~~--~~~~-----------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .|+.+.|.|.+.+.|.+. +.|  ++..                 .....|.|..+..+|.|.|  .+.|..|...
T Consensus       225 ~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~  300 (524)
T 2ec8_A          225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN  300 (524)
T ss_dssp             TTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEE
T ss_pred             cCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceE
Confidence            999999999999998876 888  2222                 1245789999999999999  7778777654

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.61  E-value=3.6e-15  Score=96.71  Aligned_cols=104  Identities=14%  Similarity=0.096  Sum_probs=78.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC--CceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeCC-C-cEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG--ESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYANP-P-AKRF   87 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~--~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~-~~~~   87 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+  ......+.|.|.    .+|.+...+....+..|+.+.|.|.+.+.+ + +.+.
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  149 (213)
T 3mj8_L           70 ATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVT  149 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEE
Confidence            4699999999999999999999887  235677888888    677776655444445799999999999863 3 3777


Q ss_pred             E--cCeeee-----------------cceEEEEecCCCCceeE--EEEcccCC
Q psy12134         88 D--EGTRFD-----------------EGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        88 ~--~~~~~~-----------------~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |  ++..+.                 ...|.|..+..+|.|.|  .+.|..+.
T Consensus       150 W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3mj8_L          150 WEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT  202 (213)
T ss_dssp             EEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred             EEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence            8  444321                 12477888888899999  77777544

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.61  E-value=8.8e-14  Score=89.41  Aligned_cols=115  Identities=14%  Similarity=0.106  Sum_probs=80.4

Q ss_pred             eEEEECCEEee--------------------e-cCCeEEEcccCCCCCEEEEEEEEcCCCCce----eeeEEEEEecC--
Q psy12134          2 LVIFFSKIELL--------------------Y-NRESLDLDRVTLKLAGLYQCIASNNIGEST----SKNFIVNVIYP--   54 (139)
Q Consensus         2 ~~W~~~~~~~~--------------------~-~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~----s~~~~l~v~~~--   54 (139)
                      +.|++++..+.                    . ....|.|.+++.+|+|.|+|.+.|..+...    ...+.|.|..+  
T Consensus        30 ~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~  109 (201)
T 1dr9_A           30 IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFP  109 (201)
T ss_dssp             EEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCC
T ss_pred             EEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCC
Confidence            67999987762                    1 236899999999999999999999776532    45777777765  


Q ss_pred             -CeEEecCceEeeCCCCeEEEEEEee-eCCCcEEEE--cCeeee----------c-ceE---EEEecCCCCceeE--EEE
Q psy12134         55 -PEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKRFD--EGTRFD----------E-GTV---TAKVLQPFSERTL--SVQ  114 (139)
Q Consensus        55 -p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~~--~~~~~~----------~-~~l---~i~~~~~~d~g~y--~~~  114 (139)
                       |.+...    ....|+.+.|.|.+. +.|.|.+.|  ++..+.          . +.+   .+..+..+|.|.|  .|.
T Consensus       110 ~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~  185 (201)
T 1dr9_A          110 TPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIK  185 (201)
T ss_dssp             CCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEE
T ss_pred             CCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEe
Confidence             433321    224588999999995 899999988  443321          1 222   2244567899999  677


Q ss_pred             cccCCC
Q psy12134        115 DKIGPG  120 (139)
Q Consensus       115 n~~g~~  120 (139)
                      |..|..
T Consensus       186 n~~~~~  191 (201)
T 1dr9_A          186 YGHLRV  191 (201)
T ss_dssp             ETTCCE
T ss_pred             cCccee
Confidence            776643

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.61  E-value=1.6e-14  Score=92.36  Aligned_cols=112  Identities=13%  Similarity=0.232  Sum_probs=80.5

Q ss_pred             eEEEE--CCEEee-----------------ecCCeEEEcccCCCCCEEEEEEEEcCCCCce-eeeEEEEEecC---CeEE
Q psy12134          2 LVIFF--SKIELL-----------------YNRESLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYP---PEVS   58 (139)
Q Consensus         2 ~~W~~--~~~~~~-----------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~-s~~~~l~v~~~---p~~~   58 (139)
                      +.|+|  ++..+.                 ..++.|.|.+++.+|+|.|+|.+.|..|... ...+.|.|..+   |.+.
T Consensus        33 i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~  112 (182)
T 1hnf_A           33 IKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKIS  112 (182)
T ss_dssp             EEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCEEE
T ss_pred             EEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCEEE
Confidence            68999  876651                 1247899999999999999999999877642 35677888753   3333


Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeeee--cceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRFD--EGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~--~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      .        .+..+.|.|.+.+.|++.+.|  ++..+.  ...+.+. ...+|.|.|  .|.|.+|....
T Consensus       113 ~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l~~~~~~i~~~-~~~~d~G~Y~C~a~N~~~~~~s  173 (182)
T 1hnf_A          113 W--------TCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHK-WTTSLSAKFKCTAGNKVSKESS  173 (182)
T ss_dssp             E--------ETTTTEEEEECSSCSSCEEEEEESSCEEEEESSCEEEE-CCSCEEEEEEEEEECSSCEEEE
T ss_pred             E--------ccCcEEEEeEccCCCCCEEEEEECCEECCCCCcEEEEe-cccCCCcEEEEEEEeCCCCcEE
Confidence            2        234789999999988888888  554432  2233332 347899999  78998887653

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.61  E-value=1.6e-15  Score=105.75  Aligned_cols=116  Identities=10%  Similarity=0.039  Sum_probs=89.9

Q ss_pred             CeEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeee
Q psy12134          1 MLVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA   80 (139)
Q Consensus         1 ~~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~   80 (139)
                      .+.|++++..+......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|...|...   ....+.+|+.+.|.|.+.+
T Consensus       127 ~v~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~-~~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~  202 (363)
T 1wio_A          127 SVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAF  202 (363)
T ss_dssp             CEEEECSSSCEEEESSEEEECSBCGGGCEECEEEEEETTEE-EEECCEECEECCSCSE---EEEEEETBCCEEEECCCCC
T ss_pred             eEEEEcCCCcccccceEEEEeeCChhcCCEEEEEEecCCCe-EEEEEEEEEecCCCCC---CceEEecCCEEEEEEEEec
Confidence            37899999888778889999999999999999999987544 4666777777655432   3456678999999998877


Q ss_pred             -----CCCcEEEE--cCeee----------------------------e--cceEEEEecCCCCceeE--EEEcc--cCC
Q psy12134         81 -----NPPAKRFD--EGTRF----------------------------D--EGTVTAKVLQPFSERTL--SVQDK--IGP  119 (139)
Q Consensus        81 -----~p~~~~~~--~~~~~----------------------------~--~~~l~i~~~~~~d~g~y--~~~n~--~g~  119 (139)
                           .|.+.+.|  ++...                            .  ...|.|.++..+|.|.|  .|.|.  .|.
T Consensus       203 ~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~  282 (363)
T 1wio_A          203 TVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK  282 (363)
T ss_dssp             CCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCC
T ss_pred             ccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCe
Confidence                 67788888  22210                            1  23788999999999999  77888  674


Q ss_pred             C
Q psy12134        120 G  120 (139)
Q Consensus       120 ~  120 (139)
                      .
T Consensus       283 ~  283 (363)
T 1wio_A          283 L  283 (363)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.61  E-value=2.2e-14  Score=92.51  Aligned_cols=106  Identities=14%  Similarity=0.073  Sum_probs=78.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE-EecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR   92 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~   92 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+........+.+..++.. ........+..+..+.+.|.+.+.|+|.+.|  ++..
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~  158 (218)
T 4frw_A           79 GSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG  158 (218)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC
T ss_pred             EEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcc
Confidence            469999999999999999998876554445555555544433 3334445667899999999999999999988  2222


Q ss_pred             e-------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         93 F-------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        93 ~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .             ....|.|..+..+|.|.|  .|.|..|...
T Consensus       159 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~  202 (218)
T 4frw_A          159 TTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQD  202 (218)
T ss_dssp             EEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred             cccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeE
Confidence            1             123688999999999999  7888877654

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.60  E-value=1e-14  Score=94.51  Aligned_cols=104  Identities=16%  Similarity=0.165  Sum_probs=75.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec---CCeEEecCceEeeCCCCeEEEEEEeee-CCCc-EEEE--
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYA-NPPA-KRFD--   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~~--   88 (139)
                      ..|.|.+++.+|+|.|+|.+.|..+........|.|..   +|.+...........|+.+.|.|.+.+ .|++ .+.|  
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k  150 (213)
T 3d9a_L           71 FTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI  150 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEc
Confidence            37999999999999999999998765444455777765   676665433323346889999999987 5554 6777  


Q ss_pred             cCeeeec-------------------ceEEEEecCCCCceeE--EEEcccCC
Q psy12134         89 EGTRFDE-------------------GTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        89 ~~~~~~~-------------------~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      ++..+..                   ..|.|..+..+|.|.|  .|.|....
T Consensus       151 ~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          151 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  202 (213)
T ss_dssp             TTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence            4433211                   2788999999999999  67776443

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.60  E-value=7.5e-15  Score=101.65  Aligned_cols=115  Identities=10%  Similarity=0.044  Sum_probs=87.4

Q ss_pred             eEEEECCE------Eee---------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEec----Cc
Q psy12134          2 LVIFFSKI------ELL---------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE----KQ   62 (139)
Q Consensus         2 ~~W~~~~~------~~~---------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~----~~   62 (139)
                      +.|+|++.      ++.         ..+..|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..++.....    +.
T Consensus        50 i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~l~V~~~~~~~~~~~~~~~  128 (349)
T 4dep_C           50 LIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYC-SKVAFPLEVVQKDSCFNSPMKLPV  128 (349)
T ss_dssp             EEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCTTSCCSCCCCE
T ss_pred             EEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEEEEEEecCCce-EEEEEEEEEecCCcccCcccccCc
Confidence            78999873      111         23578999999999999999999998776 467788888876543211    23


Q ss_pred             eEeeCCCCeEEEEEEe-----eeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         63 WIHTAPDMRAEIICNV-----YANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~-----~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      ...+..|+.+.|.|.+     .+.|.+.+.|  ++..+        ....|.|..+..+|.|.|  .+.|..
T Consensus       129 ~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  200 (349)
T 4dep_C          129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPE  200 (349)
T ss_dssp             EEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEE
T ss_pred             ceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEee
Confidence            4466789999999985     7788888888  44432        235799999999999999  677876

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.60  E-value=7.1e-14  Score=93.09  Aligned_cols=100  Identities=15%  Similarity=0.031  Sum_probs=76.1

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec---------------CCeEEecCceEeeCCCCeEEEEEEeeeC
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---------------PPEVSVEKQWIHTAPDMRAEIICNVYAN   81 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~   81 (139)
                      .|.|.+++.+|+|.|.|.+.|..+........|.|..               ++.+...+....+.+|+++.|.|.+.+.
T Consensus        81 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  160 (253)
T 3uzq_A           81 YLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASEN  160 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSC
T ss_pred             EEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCc
Confidence            3999999999999999999986655334667777774               4566666777788999999999999998


Q ss_pred             CCc----EEEEcC----eee------------------------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         82 PPA----KRFDEG----TRF------------------------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        82 p~~----~~~~~~----~~~------------------------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      |.+    .++|-.    ...                        ....|.|.++..+|.|.|  .+.|.
T Consensus       161 ~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~  229 (253)
T 3uzq_A          161 VDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNE  229 (253)
T ss_dssp             CEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             cccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            876    778822    110                        012599999999999999  45554

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.60  E-value=2.6e-14  Score=97.23  Aligned_cols=117  Identities=9%  Similarity=0.078  Sum_probs=86.3

Q ss_pred             eEEEECCEEeeecC------------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE------------------
Q psy12134          2 LVIFFSKIELLYNR------------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV------------------   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~~------------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v------------------   51 (139)
                      +.|++++.++....            ..|.|.+++.+|+|.|+|.+.+...   .....+.+                  
T Consensus       140 v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (312)
T 2y23_A          140 VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA---TNHSTVVLVGDVFKKLQKEAEFQRQE  216 (312)
T ss_dssp             EEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSC---EEEEEEEECTHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCc---eEEEEEEEcchhhhhhcccccccccc
Confidence            78999998875421            2299999999999999999986543   23333443                  


Q ss_pred             ---ecCCeEEecCceEeeCCCCeEEEEEEeeeCCCc-EEEE--cCeeee----------cceEEEEecCCCCceeE--EE
Q psy12134         52 ---IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KRFD--EGTRFD----------EGTVTAKVLQPFSERTL--SV  113 (139)
Q Consensus        52 ---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~--~~~~~~----------~~~l~i~~~~~~d~g~y--~~  113 (139)
                         ..+|.+..... ..+..|+.+.|.|.+.+.|++ .+.|  ++..+.          ...|.|.++..+|.|.|  .|
T Consensus       217 ~~~~~~p~~~~~~~-~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a  295 (312)
T 2y23_A          217 WIRKQGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL  295 (312)
T ss_dssp             HHHHHSSEEEEEEE-EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEE
T ss_pred             hhhccCCceeecce-EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEE
Confidence               12355543322 567799999999999999988 8888  444322          24799999999999999  88


Q ss_pred             EcccCCCCC
Q psy12134        114 QDKIGPGPD  122 (139)
Q Consensus       114 ~n~~g~~~~  122 (139)
                      .|.+|....
T Consensus       296 ~N~~G~~~~  304 (312)
T 2y23_A          296 KDDRGKDKS  304 (312)
T ss_dssp             ESTTCCEEE
T ss_pred             EcCCCceee
Confidence            999887653

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.60  E-value=1.2e-14  Score=95.08  Aligned_cols=101  Identities=20%  Similarity=0.247  Sum_probs=74.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC---eEEecCceEeeCCCCeE-EEEEEe-eeCCCcEEEE--
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP---EVSVEKQWIHTAPDMRA-EIICNV-YANPPAKRFD--   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p---~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~~~~--   88 (139)
                      +.|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|   .+...+....+..|+.+ .|.|.+ .+.|.+.+.|  
T Consensus        77 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~  156 (231)
T 2pet_A           77 GRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR  156 (231)
T ss_dssp             CCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEE
T ss_pred             ceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEE
Confidence            5699999999999999999999873336788899998764   44444444556788988 999999 8999998888  


Q ss_pred             cCeeee--c-----------------------ceEEEEecCCCCceeE--EEEcc
Q psy12134         89 EGTRFD--E-----------------------GTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        89 ~~~~~~--~-----------------------~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      ++..+.  .                       ..|.+.....+|.|.|  .|.|.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          157 NGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             TTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            333211  0                       3466664555569999  77774

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.59  E-value=2.3e-14  Score=105.37  Aligned_cols=103  Identities=14%  Similarity=0.059  Sum_probs=80.8

Q ss_pred             EEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEee----eCCCcEEEE--cCe
Q psy12134         18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVY----ANPPAKRFD--EGT   91 (139)
Q Consensus        18 L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~~~~~--~~~   91 (139)
                      |.|.+++.+|+|.|+|.+ |..+. .+..+.|.|...|.....+....+..|+.+.|.|.+.    +.|.+.+.|  ++.
T Consensus       408 L~I~~v~~~D~G~Y~C~a-n~~g~-~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~  485 (585)
T 2ocw_A          408 VILNQLTSRDAGFYWCLT-NGDTL-WRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGC  485 (585)
T ss_pred             EEECCCChhhCEEEEEcc-cCCCc-cceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCc
Confidence            999999999999999999 87777 4788889998754433335556778999999999997    567777888  332


Q ss_pred             ee-------------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         92 RF-------------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        92 ~~-------------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      ..                   ....|.|.++..+|.|.|  .|.|.+|.+..
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  537 (585)
T 2ocw_A          486 QALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGET  537 (585)
T ss_pred             eeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEE
Confidence            21                   013789999999999999  88999886654

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.59  E-value=1.3e-14  Score=98.71  Aligned_cols=112  Identities=13%  Similarity=0.097  Sum_probs=83.6

Q ss_pred             CeEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec------------CCeEE
Q psy12134          1 MLVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY------------PPEVS   58 (139)
Q Consensus         1 ~~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~------------~p~~~   58 (139)
                      .+.|+|++.++...          ...|.|.+++.+|+|.|+|.+.|..|..  ..+.+.|..            +|.+.
T Consensus        33 ~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~--~s~~l~v~~~~~~~~~~~~~~~p~~~  110 (312)
T 2y23_A           33 EFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIA--SSYLIDEEELKRLLALSHEHKFPTVP  110 (312)
T ss_dssp             CEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCC--EEEEECHHHHHHHHHHHHHHHSCBCC
T ss_pred             EEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcE--EEEEEEEeeeeeeecccccCCCCccc
Confidence            37899999876421          1589999999999999999999988763  356666653            55544


Q ss_pred             ecC-ceEeeCCCCeEEEEEEee-eCCCcEEEE--cCeeee------------c--ceEEEEecCCCCceeEEEE
Q psy12134         59 VEK-QWIHTAPDMRAEIICNVY-ANPPAKRFD--EGTRFD------------E--GTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        59 ~~~-~~~~~~~g~~~~l~C~~~-~~p~~~~~~--~~~~~~------------~--~~l~i~~~~~~d~g~y~~~  114 (139)
                      ... ....+.+|+.+.|.|.+. +.|.+.+.|  ++....            .  ..|.|.++..+|.|.|.|.
T Consensus       111 ~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  184 (312)
T 2y23_A          111 VKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ  184 (312)
T ss_dssp             EEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEE
T ss_pred             cccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEE
Confidence            322 256778999999999999 888888888  333321            1  1289999999999999443

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.59  E-value=3.9e-14  Score=91.72  Aligned_cols=118  Identities=13%  Similarity=0.022  Sum_probs=82.5

Q ss_pred             eEEEECC------EEeee-cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE-EecCceEeeCCCCeEE
Q psy12134          2 LVIFFSK------IELLY-NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHTAPDMRAE   73 (139)
Q Consensus         2 ~~W~~~~------~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~   73 (139)
                      +.|+++.      ..... ....|.|.+++.+|+|.|.|.+.|..+. .+..+.|.|..+|.. ...+. ..+.+|+.+.
T Consensus        33 i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~-~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~  110 (202)
T 1vca_A           33 FSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-LEKGIQVEIYSFPKDPEIHLS-GPLEAGKPIT  110 (202)
T ss_dssp             EEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEEEBCCSCCEEEES-SCEETTSCEE
T ss_pred             EEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce-EeeEEEEEEEeCCCCCEeCCc-eEEcCCCCEE
Confidence            6899842      21111 2357999999999999999999998766 578899999886642 22222 4567899999


Q ss_pred             EEEEeeeCCCc---EEEE--cCeeee----------------cceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         74 IICNVYANPPA---KRFD--EGTRFD----------------EGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        74 l~C~~~~~p~~---~~~~--~~~~~~----------------~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      |.|.+.+.+++   .+.|  ++..+.                ...|.+.....+|.|.|  .|.|.+|...
T Consensus       111 L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~  181 (202)
T 1vca_A          111 VKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD  181 (202)
T ss_dssp             EEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCT
T ss_pred             EEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCC
Confidence            99999986542   5667  433211                11235666667788899  7888887754

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.58  E-value=2.4e-14  Score=98.07  Aligned_cols=114  Identities=15%  Similarity=0.125  Sum_probs=78.5

Q ss_pred             eEEEECCEEeee-----------cCCeEEEcccCCCCCEEEEEEEEcCCCCc----eeeeEEEEEec---CCeEEecCce
Q psy12134          2 LVIFFSKIELLY-----------NRESLDLDRVTLKLAGLYQCIASNNIGES----TSKNFIVNVIY---PPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~----~s~~~~l~v~~---~p~~~~~~~~   63 (139)
                      +.|+|++..+..           ....|.|.+++.+|+|.|+|.+.|..+..    .+..+.|.|..   +|.+...+..
T Consensus       149 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~  228 (316)
T 3vh8_G          149 FFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP  228 (316)
T ss_dssp             EEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCS
T ss_pred             EEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCC
Confidence            689998876521           24679999999999999999999987642    26677788863   4666655443


Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                       .+.+|+++.|.|.+.. |.+.+.|  ++...             ....|.|..+.  |.|.|  .+.|..+.
T Consensus       229 -~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          229 -KVQAGESVTLSCSSRS-SYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             -CCCTTSCCEEEEEESS-CCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             -eecCCCcEEEEEECCC-CCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence             5678999999999984 6677777  33221             11468888888  99999  66676554

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.58  E-value=1.4e-14  Score=99.65  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=72.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc----eeeeEEEEEecCCeE--EecCceEeeCCCCeEEEEEEeeeCCCc--EEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES----TSKNFIVNVIYPPEV--SVEKQWIHTAPDMRAEIICNVYANPPA--KRF   87 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~----~s~~~~l~v~~~p~~--~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~   87 (139)
                      ..|.|.+++.+|+|.|+|.+.|..+..    .+..+.|.|..+|..  ...+ ...+..|+.+.|.|.+.+.|++  .+.
T Consensus        74 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~  152 (327)
T 2wng_A           74 FSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVSFTCESHGFSPRDITLK  152 (327)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEEEEEEEEEEBSSCCEEE
T ss_pred             eEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEEEEEEEeCccCCCcEEE
Confidence            579999999999999999999976531    235578888765432  2222 2456789999999999988766  677


Q ss_pred             E--cCeeee-----------------cceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         88 D--EGTRFD-----------------EGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        88 ~--~~~~~~-----------------~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      |  ++..+.                 ...|.+.....++.|.|  .+.|..|..
T Consensus       153 W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~  206 (327)
T 2wng_A          153 WFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQG  206 (327)
T ss_dssp             EEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCS
T ss_pred             EEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCC
Confidence            8  443311                 11355555566667999  777876654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.57  E-value=7.8e-14  Score=92.40  Aligned_cols=100  Identities=14%  Similarity=0.132  Sum_probs=74.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecC---------------CeEEecCceEeeCCCCeEEEEEEee
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYP---------------PEVSVEKQWIHTAPDMRAEIICNVY   79 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~   79 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+.. ......|.|...               +.+...+....+.+|+++.|.|.+.
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  160 (247)
T 2ghw_B           81 LYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRAS  160 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEES
T ss_pred             EEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeC
Confidence            369999999999999999999873221 234557777754               3345556666788999999999999


Q ss_pred             eCCCcEEEEc----Ceee------------------------ecceEEEEecCCCCceeE--EEEc
Q psy12134         80 ANPPAKRFDE----GTRF------------------------DEGTVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        80 ~~p~~~~~~~----~~~~------------------------~~~~l~i~~~~~~d~g~y--~~~n  115 (139)
                      +.|++.+.|-    +...                        ....|.|..+..+|.|.|  .+.|
T Consensus       161 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  226 (247)
T 2ghw_B          161 QSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRS  226 (247)
T ss_dssp             SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEcc
Confidence            9998888882    2211                        123589999999999999  4454

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.57  E-value=1.8e-14  Score=105.53  Aligned_cols=112  Identities=15%  Similarity=0.109  Sum_probs=80.6

Q ss_pred             eEEEECCEEeeec------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEE
Q psy12134          2 LVIFFSKIELLYN------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII   75 (139)
Q Consensus         2 ~~W~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~   75 (139)
                      ++|+|++.++...      ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.++|.+.....      +  ..|.
T Consensus       358 i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~-~~~~~~L~V~~~P~i~~~~~------~--~~l~  428 (527)
T 3qs9_E          358 CTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIRRKPQVLAEAS------A--SQAS  428 (527)
T ss_dssp             EEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEE-EEEEEEEC--CCCEEEECCC------C--E---
T ss_pred             EEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCc-EEEEEEEEEecCCeEEEeCC------C--CEEE
Confidence            7899999988543      468999999999999999999999987 57789999999998865432      2  3579


Q ss_pred             EEeeeCCCcEEEEcCe--ee-----------------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         76 CNVYANPPAKRFDEGT--RF-----------------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        76 C~~~~~p~~~~~~~~~--~~-----------------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      |.+.+.|+|.+.|...  ..                       ....+.+.....+|.|.|  .|.|.+|....
T Consensus       429 C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~  502 (527)
T 3qs9_E          429 CFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCE  502 (527)
T ss_dssp             EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEE
T ss_pred             EEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCcee
Confidence            9999999999988211  00                       001122333335799999  89999998765

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.57  E-value=3e-14  Score=104.73  Aligned_cols=103  Identities=13%  Similarity=0.129  Sum_probs=82.5

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCC-CcEEEE--cCee-
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKRFD--EGTR-   92 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~--~~~~-   92 (139)
                      .|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.+ ++.+.|  ++.. 
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~  154 (585)
T 2ocw_A           76 VVNIAQLSQDDSGRYKCGLGINSRG-LSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLY  154 (585)
T ss_pred             EEEECCCCcccCEEEEEEcccCCCC-ceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCC
Confidence            6999999999999999999998776 4788999999999887777777888999999999998655 455777  2210 


Q ss_pred             --------------------e-ecc------eEEEEecCCCCceeE--EEEcccCCC
Q psy12134         93 --------------------F-DEG------TVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        93 --------------------~-~~~------~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                                          + ..+      .|.|.++..+|.|.|  .+.|..|..
T Consensus       155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~  211 (585)
T 2ocw_A          155 PVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN  211 (585)
T ss_pred             ceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccc
Confidence                                0 111      689999999999999  667776653

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.57  E-value=1.1e-13  Score=89.62  Aligned_cols=106  Identities=17%  Similarity=0.106  Sum_probs=75.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEe-eeCCCcEEEEc--Cee
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKRFDE--GTR   92 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~~--~~~   92 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+........+.+..+|.............+..+.+.|.+ .+.|++...|.  +..
T Consensus        83 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~  162 (225)
T 4fmk_A           83 ATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGG  162 (225)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCC
T ss_pred             EEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCcc
Confidence            569999999999999999999877665566666777777766544444444566676666654 56677777662  111


Q ss_pred             -e--------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         93 -F--------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        93 -~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                       .              ....|.|..+..+|.|.|  .|.|..|...
T Consensus       163 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~  208 (225)
T 4fmk_A          163 EAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEP  208 (225)
T ss_dssp             EEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred             ccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeE
Confidence             0              123588899999999999  7888766554

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.56  E-value=5.8e-15  Score=95.64  Aligned_cols=104  Identities=13%  Similarity=0.059  Sum_probs=75.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeCC--CcEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYANP--PAKRFD   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~~   88 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+ ........|.|.    .+|.+...+....+..|+.+.|.|.+.+.+  .+.+.|
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W  147 (211)
T 3tv3_L           68 ASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAW  147 (211)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEE
Confidence            4699999999999999999999877 335667788887    677776555433444699999999999853  466777


Q ss_pred             --cCeeee------------------cceEEEEecCCCCceeE--EEEcccCC
Q psy12134         89 --EGTRFD------------------EGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        89 --~~~~~~------------------~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                        ++..+.                  ...|.+..+..+|.|.|  .+.|..+.
T Consensus       148 ~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~  200 (211)
T 3tv3_L          148 KADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  200 (211)
T ss_dssp             EETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             EECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence              444321                  12466666777789999  67776543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.55  E-value=1.7e-14  Score=101.38  Aligned_cols=119  Identities=14%  Similarity=0.104  Sum_probs=91.0

Q ss_pred             eEEEECCEEeee----------cCCeEEEc----ccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEE-ecCceEee
Q psy12134          2 LVIFFSKIELLY----------NRESLDLD----RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS-VEKQWIHT   66 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~----~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~-~~~~~~~~   66 (139)
                      +.|+|++..+..          ..+.|.|.    +++.+|+|.|+|.+.|..|...+..+.|.|..+|.+. .......+
T Consensus        49 v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v  128 (404)
T 3p3y_A           49 FHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV  128 (404)
T ss_dssp             EEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEE
T ss_pred             EEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEE
Confidence            789999987642          23556664    7888999999999999988765678899998877654 33344677


Q ss_pred             CCCCeEEEEEEe-eeCCCcEEEEcCe--e----------eecceEEEEecCCCC-ceeE--EEEcccCCC
Q psy12134         67 APDMRAEIICNV-YANPPAKRFDEGT--R----------FDEGTVTAKVLQPFS-ERTL--SVQDKIGPG  120 (139)
Q Consensus        67 ~~g~~~~l~C~~-~~~p~~~~~~~~~--~----------~~~~~l~i~~~~~~d-~g~y--~~~n~~g~~  120 (139)
                      .+|+.+.|.|.+ .+.|.+.+.|...  .          ...+.|.|.++..+| .|.|  .+.|..|..
T Consensus       129 ~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~  198 (404)
T 3p3y_A          129 QEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHT  198 (404)
T ss_dssp             ETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCC
T ss_pred             ccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccc
Confidence            899999999999 7888888888221  1          134679999999999 5999  677776654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.55  E-value=5.4e-14  Score=91.04  Aligned_cols=102  Identities=19%  Similarity=0.139  Sum_probs=72.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec---CCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-EEEE--
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KRFD--   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~~--   88 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+........|.|..   +|.+........+..|+.+.|.|.+.+. |++ .+.|  
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k  149 (210)
T 1lk3_L           70 FTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKI  149 (210)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEe
Confidence            37999999999999999999987765334455677765   5666654333234479999999999874 443 6777  


Q ss_pred             cCeeeec-------------------ceEEEEecCCCCceeE--EEEccc
Q psy12134         89 EGTRFDE-------------------GTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        89 ~~~~~~~-------------------~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      ++..+..                   ..|.|..+..+|.|.|  .+.|..
T Consensus       150 ~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  199 (210)
T 1lk3_L          150 DGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKT  199 (210)
T ss_dssp             TTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             CCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecC
Confidence            4432211                   1578888889999999  566653

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.55  E-value=8e-14  Score=101.38  Aligned_cols=107  Identities=17%  Similarity=0.132  Sum_probs=79.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc--eeeeEEEEE----ecCCeEEecCceEeeCCCCeEEEEEEeeeCCCc--EEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNV----IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KRF   87 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~--~s~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~   87 (139)
                      ..|.|.+++.+|+|.|+|.+.|..|..  ....+.|.|    ..+|.+...+....+..|+.+.|.|.+.+.|++  .+.
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  149 (523)
T 2rcj_C           70 ASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVA  149 (523)
T ss_pred             EEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEE
Confidence            479999999999999999999976531  235567888    356766655555556679999999999988765  677


Q ss_pred             E--cCeee------------ec------ceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         88 D--EGTRF------------DE------GTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        88 ~--~~~~~------------~~------~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      |  ++..+            .+      ..|.|..+..+|.|.|  .+.|..|....
T Consensus       150 W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  206 (523)
T 2rcj_C          150 WKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  206 (523)
T ss_pred             EecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccccc
Confidence            8  33221            01      2588999999999999  77887775543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.55  E-value=4.5e-14  Score=91.79  Aligned_cols=103  Identities=12%  Similarity=0.019  Sum_probs=71.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEe---cCCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-EEEE-
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI---YPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KRFD-   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~~-   88 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+ ........|.|.   .+|.+...........|+.+.|.|.+.+. |++ .+.| 
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  151 (216)
T 2xzc_L           72 ATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWK  151 (216)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEE
Confidence            3799999999999999999999876 223345567775   45666543322222358899999999984 444 6778 


Q ss_pred             -cCeeeec-------------------ceEEEEecCCCCceeE--EEEcccC
Q psy12134         89 -EGTRFDE-------------------GTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        89 -~~~~~~~-------------------~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                       ++..+..                   ..|.|..+..+|.|.|  .+.|...
T Consensus       152 k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (216)
T 2xzc_L          152 VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  203 (216)
T ss_dssp             ETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             ECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCC
Confidence             3332111                   1577888888999999  6667643

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.55  E-value=9.1e-14  Score=99.30  Aligned_cols=118  Identities=13%  Similarity=0.095  Sum_probs=78.0

Q ss_pred             eEEEECCEEeeec------C---CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeE
Q psy12134          2 LVIFFSKIELLYN------R---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA   72 (139)
Q Consensus         2 ~~W~~~~~~~~~~------~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~   72 (139)
                      +.|++++..+...      .   ..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|.+... ....+..|+.+
T Consensus        80 i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~~~~~-~p~~~~~~~~~  157 (423)
T 3qs7_E           80 CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLR-RPYFRKMENQD  157 (423)
T ss_dssp             EEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CE-EEEEEEEEEC-----CEE-EEEEEECSSSS
T ss_pred             EEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCc-EEEEEEEEEecCcccccc-CCcEeccCCce
Confidence            6899999876431      1   35999999999999999999999887 577888999877755322 22233457888


Q ss_pred             EEEEEeeeCCCcEEEEc--Ceee-------ecceEEE-EecCCCCceeE--EEEcccCCCC
Q psy12134         73 EIICNVYANPPAKRFDE--GTRF-------DEGTVTA-KVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        73 ~l~C~~~~~p~~~~~~~--~~~~-------~~~~l~i-~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .|.|.+.|.|.|.+.|.  +...       ....... ..+...|.|.|  .|.|.+|...
T Consensus       158 ~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~  218 (423)
T 3qs7_E          158 ALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGREC  218 (423)
T ss_dssp             CEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEE
T ss_pred             EEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcc
Confidence            99999999999999882  2211       0011111 11257899999  8899888654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.54  E-value=2.5e-15  Score=103.39  Aligned_cols=117  Identities=17%  Similarity=0.220  Sum_probs=46.4

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe-------------------
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-------------------   56 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~-------------------   56 (139)
                      +.|+|++..+..      .+..|.|.+++.+|+|.|+|.+.|. +. .+..+.|.|...+.                   
T Consensus        41 v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~  118 (334)
T 1ry7_B           41 TVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QR-VLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG  118 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-Ce-EEEEEEEEEeccCccccccccccccccccccCC
Confidence            689999887643      2478999999999999999999998 55 46777777765432                   


Q ss_pred             ---EEec----CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--E
Q psy12134         57 ---VSVE----KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--S  112 (139)
Q Consensus        57 ---~~~~----~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~  112 (139)
                         +...    .....+..|+.+.|.|.+.+.|.+.+.|  ++..+             ....|.|..+..+|.|.|  .
T Consensus       119 ~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  198 (334)
T 1ry7_B          119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV  198 (334)
T ss_dssp             CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEE
T ss_pred             CCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEE
Confidence               2211    1234567899999999999999999988  33221             224799999999999999  6


Q ss_pred             EEcccCCC
Q psy12134        113 VQDKIGPG  120 (139)
Q Consensus       113 ~~n~~g~~  120 (139)
                      +.|..|..
T Consensus       199 a~n~~g~~  206 (334)
T 1ry7_B          199 VENKFGSI  206 (334)
T ss_dssp             EEETTEEE
T ss_pred             EEeCCCCE
Confidence            77777654

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.54  E-value=1.3e-13  Score=89.28  Aligned_cols=101  Identities=12%  Similarity=0.131  Sum_probs=72.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCce---eeeEEEEEec---CCeEEecCceEeeCCCCeEEEEEEeeeC----CCcE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGEST---SKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYAN----PPAK   85 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~---s~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~   85 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+...   +..+.|.|..   +|.+....   .+.+|+.+.|.|.+.+.    |++.
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~---~~~~G~~v~L~C~~~~~~~~~p~p~  158 (214)
T 2zg1_A           82 CSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE---PLESGRPTRLSCSLPGSCEAGPPLT  158 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C---CCCTTCCEEEEEECTTCCSCSSCCE
T ss_pred             EEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc---cccCCCeEEEEEEeccCCCCCCCce
Confidence            3799999999999999999998753221   3577888876   34443321   35689999999999764    7888


Q ss_pred             EEEcCe--e------eecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         86 RFDEGT--R------FDEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        86 ~~~~~~--~------~~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      +.|...  .      .....|.|..+..+|.|.|  .|.|..+.
T Consensus       159 v~W~~~~~~~~~~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~  202 (214)
T 2zg1_A          159 FSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQ  202 (214)
T ss_dssp             EEEESSTTSSSCSSCCCSSEEEECCCTTCCSCEEEEEEECC---
T ss_pred             EEEeCCCCccCCCCceeEEEEEEecccHHcCcEEEEEEEeCCCC
Confidence            888322  1      2346789999989999999  67776543

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.54  E-value=1.1e-14  Score=102.02  Aligned_cols=118  Identities=13%  Similarity=0.082  Sum_probs=88.5

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec--CCeEEecCceEeeCCCC
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDM   70 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~--~p~~~~~~~~~~~~~g~   70 (139)
                      +.|+|+|..+..         ..+.|.|.+++.+|+|.|+|.+.|..|...+..+.|.|..  .|.+  .+....+.+|+
T Consensus        39 v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~--~~~~~~~~~G~  116 (395)
T 1bih_A           39 YSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA--KTHEKTPIEGR  116 (395)
T ss_dssp             EEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCC--EEEEECCBTTE
T ss_pred             EEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCc--CCcceeeeeCC
Confidence            789999877643         2478999999999999999999998776444556666654  3333  23345667899


Q ss_pred             eEEEEEEe-eeCCCcEEEEcCee------------------eecceEEEEecCCCCce---eE--EEEcccCCCC
Q psy12134         71 RAEIICNV-YANPPAKRFDEGTR------------------FDEGTVTAKVLQPFSER---TL--SVQDKIGPGP  121 (139)
Q Consensus        71 ~~~l~C~~-~~~p~~~~~~~~~~------------------~~~~~l~i~~~~~~d~g---~y--~~~n~~g~~~  121 (139)
                      .+.|.|.+ .+.|.+.+.|....                  ...+.|.|..+..+|.|   .|  .+.|..|...
T Consensus       117 ~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~  191 (395)
T 1bih_A          117 PFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE  191 (395)
T ss_dssp             EEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSC
T ss_pred             cEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceE
Confidence            99999996 78898888882211                  13457999999999999   99  7777777643

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.54  E-value=4.2e-15  Score=106.14  Aligned_cols=116  Identities=15%  Similarity=0.202  Sum_probs=83.1

Q ss_pred             eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCC-Cc--eeeeEEEEEecCCeEEecC--ceEeeCCCCeEEE
Q psy12134          2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIG-ES--TSKNFIVNVIYPPEVSVEK--QWIHTAPDMRAEI   74 (139)
Q Consensus         2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~--~s~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l   74 (139)
                      ++|  +|.++..  ....|.|.++..+|+|.|+|.|.|..+ ..  .+..+.|.|.++|.+....  ....+.+|+.+.|
T Consensus       313 i~W--~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l  390 (450)
T 1z7z_I          313 VTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTP  390 (450)
T ss_dssp             -------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECC
T ss_pred             eEE--CCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEE
Confidence            678  6666522  346899999999999999999997654 31  3477889999988876543  5567789999999


Q ss_pred             EEEeeeCCCcEEEE--cCe-eeecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         75 ICNVYANPPAKRFD--EGT-RFDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        75 ~C~~~~~p~~~~~~--~~~-~~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .|.+.|.|+|.+.|  ++. ....+.+.  .+..+|.|.|  .|.|.+|...
T Consensus       391 ~C~~~g~P~p~i~W~~~g~~~~~~g~~~--~v~~~d~G~Y~C~a~N~~G~~~  440 (450)
T 1z7z_I          391 MCQAWGNPLPELKCLKDGTFPLPIGESV--TVTRDLEGTYLCRARSTQGEVT  440 (450)
T ss_dssp             CCCCEEESCCEEEEEETTTEECCTTSCE--ECCGGGCEEEEEEEEETTEEEE
T ss_pred             EEecccCCCCcEEEEECCcccCCCCCeE--eEehhhCeEEEEEEEeCCCcee
Confidence            99999999999988  443 22333322  6888999999  8999988764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.54  E-value=1.8e-15  Score=103.20  Aligned_cols=119  Identities=13%  Similarity=0.061  Sum_probs=83.4

Q ss_pred             eEEEECCEEeeec--------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEE
Q psy12134          2 LVIFFSKIELLYN--------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE   73 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~   73 (139)
                      +.|+|++..+...        ...|.|.+++.+|+|.|+|.+.|..+. ....+.|.|...|.+........+..|+.+.
T Consensus        39 v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~  117 (317)
T 2y25_A           39 IVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMMEVCKKIALSATDLK  117 (317)
T ss_dssp             EEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCE-EEEEECCSTHHHHHHHHHHHHHHHTCBCCCE
T ss_pred             EEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCc-EEEEEEEEEecCccccccCCceecccCCCeE
Confidence            7899999887542        258999999999999999999998876 3555666555444332222223345677777


Q ss_pred             EEEEeee----------CCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         74 IICNVYA----------NPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        74 l~C~~~~----------~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      |.|.+.+          .|.+.+.|  ++..+            ....|.|.++..+|.|.|  .+.|..|...
T Consensus       118 l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  191 (317)
T 2y25_A          118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ  191 (317)
T ss_dssp             EEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEE
T ss_pred             EEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEE
Confidence            7777766          68888888  33221            112489999999999999  6777766543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.53  E-value=2.3e-13  Score=88.61  Aligned_cols=104  Identities=14%  Similarity=0.082  Sum_probs=71.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC---ceeeeEEEEEecC----CeEEecCceEeeCCCCeEEEEEEeee-CCCc-EE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYP----PEVSVEKQWIHTAPDMRAEIICNVYA-NPPA-KR   86 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~---~~s~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~   86 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+.   .......|.|...    |.+........+..|+.+.|.|.+.+ .|.| .+
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  158 (219)
T 1c1e_H           79 AYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV  158 (219)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEE
Confidence            47999999999999999999987632   1234567777653    55553332234568999999999998 7888 88


Q ss_pred             EE--cCeee---------------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         87 FD--EGTRF---------------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        87 ~~--~~~~~---------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      .|  ++...               ....|.|... ..|.|.|  .|.|..|..
T Consensus       159 ~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~  210 (219)
T 1c1e_H          159 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHPASST  210 (219)
T ss_dssp             EEGGGTBCTTEEECCCEESSSCEEEEEEEEEESS-STTTSCCEEEEEEGGGTE
T ss_pred             EEEeCCcccceEecCCcccCCeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCc
Confidence            89  33210               1124667433 3356999  788876653

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.53  E-value=6.1e-14  Score=94.53  Aligned_cols=112  Identities=13%  Similarity=0.036  Sum_probs=83.8

Q ss_pred             eEEEECCEEe-----eecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe-EEecCceEeeCCCCeEEEE
Q psy12134          2 LVIFFSKIEL-----LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTAPDMRAEII   75 (139)
Q Consensus         2 ~~W~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~   75 (139)
                      +.|++++...     ......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|. +...+....+.+|+.+.|.
T Consensus        32 v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~  110 (289)
T 3ejj_X           32 VEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMA-GSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLP  110 (289)
T ss_dssp             CEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEEC
T ss_pred             EEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCCc-ceeEEEEEEeCCCcceecccceEEEecCCceEeE
Confidence            6899876432     123578999999999999999999988776 57888999988765 4555566778899999999


Q ss_pred             EEeeeCCCcE-EEE---cCee---------eecceEEEEecCCCCceeE--EEE
Q psy12134         76 CNVYANPPAK-RFD---EGTR---------FDEGTVTAKVLQPFSERTL--SVQ  114 (139)
Q Consensus        76 C~~~~~p~~~-~~~---~~~~---------~~~~~l~i~~~~~~d~g~y--~~~  114 (139)
                      |.+.+.+++. +.|   ++..         ...+.|.|..+..+|.|.|  .+.
T Consensus       111 C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  164 (289)
T 3ejj_X          111 CLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTM  164 (289)
T ss_dssp             EEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEE
T ss_pred             EEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEE
Confidence            9999877665 767   2222         1345799999999999999  444

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.53  E-value=3.1e-14  Score=99.67  Aligned_cols=118  Identities=13%  Similarity=0.157  Sum_probs=91.2

Q ss_pred             eEEEE-CCEEeee--------cCCeEEEcccCCCC------CEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEee
Q psy12134          2 LVIFF-SKIELLY--------NRESLDLDRVTLKL------AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT   66 (139)
Q Consensus         2 ~~W~~-~~~~~~~--------~~~~L~i~~v~~~d------~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~   66 (139)
                      +.|+| +|.++..        .++.|.|.+++.+|      +|.|+|.+.|..|...+..+.|.+..+|.+...+....+
T Consensus        36 v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v  115 (388)
T 2v5m_A           36 IIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHV  115 (388)
T ss_dssp             EEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEE
T ss_pred             EEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceee
Confidence            78999 6665432        35789999999987      999999999998775567888888888877665666678


Q ss_pred             CCCCeEEEEEEeeeCCC---cEEEE--cCee--------------eecceEEEEecCCCCc-eeE--EEEcccCC
Q psy12134         67 APDMRAEIICNVYANPP---AKRFD--EGTR--------------FDEGTVTAKVLQPFSE-RTL--SVQDKIGP  119 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~---~~~~~--~~~~--------------~~~~~l~i~~~~~~d~-g~y--~~~n~~g~  119 (139)
                      .+|+.+.|.|.+.+.++   +.+.|  ++..              ...+.|.|..+..+|. |.|  .+.|..+.
T Consensus       116 ~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~  190 (388)
T 2v5m_A          116 IRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTG  190 (388)
T ss_dssp             ETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTC
T ss_pred             ecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCC
Confidence            89999999999988754   56677  2221              1246799999999999 999  66666543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.53  E-value=7e-15  Score=101.44  Aligned_cols=119  Identities=8%  Similarity=-0.063  Sum_probs=90.3

Q ss_pred             eEEEECCEEee----------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEE--ecCceEeeCCC
Q psy12134          2 LVIFFSKIELL----------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS--VEKQWIHTAPD   69 (139)
Q Consensus         2 ~~W~~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~--~~~~~~~~~~g   69 (139)
                      +.|+|++..+.          ..++.|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|...+...  .......+..|
T Consensus        57 v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~g  135 (339)
T 3o4o_C           57 LTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLS  135 (339)
T ss_dssp             CCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETTEE-EEEEEEEEEECSCGGGHHHHCEEEEEETT
T ss_pred             EEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCcce-EEEEEEEEEEcCCCccccccccceEEECC
Confidence            67999987632          23578999999999999999999998875 5788888888765432  11223466789


Q ss_pred             CeEEEEEE-----eeeCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         70 MRAEIICN-----VYANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        70 ~~~~l~C~-----~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.+.|.|.     +.+.|.+.+.|  ++..+           ..+.|.|..+..+|.|.|  .+.|..|...
T Consensus       136 ~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  207 (339)
T 3o4o_C          136 TSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQ  207 (339)
T ss_dssp             SCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBC
T ss_pred             CCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeE
Confidence            99999999     78888888877  33322           114799999999999999  7788776543

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.53  E-value=8.1e-14  Score=95.82  Aligned_cols=116  Identities=15%  Similarity=0.115  Sum_probs=74.7

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCc--eeeeEEE--EEecCCeEEecCc
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIV--NVIYPPEVSVEKQ   62 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~--~s~~~~l--~v~~~p~~~~~~~   62 (139)
                      +.|++++.++...               .+.|.|.....+|.|.|+|.+.|..+..  ....+.+  .+..+|.+...+.
T Consensus       151 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~  230 (327)
T 2wng_A          151 LKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQ  230 (327)
T ss_dssp             EEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEE
T ss_pred             EEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecC
Confidence            7899999876421               1356676666677899999999987652  2333343  4567887765443


Q ss_pred             eEeeCCCCeEEEEEEeeeCCC-c-EEEE--cCeeee-----------c------ceEEEEecCCCCceeE--EEEcccCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPP-A-KRFD--EGTRFD-----------E------GTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~-~-~~~~--~~~~~~-----------~------~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      .  +.+|+.+.|.|.+.+.|+ + .+.|  ++..+.           .      ..|.|..+..+|.|.|  .|.|..|.
T Consensus       231 ~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~  308 (327)
T 2wng_A          231 P--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQP  308 (327)
T ss_dssp             C--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCC
T ss_pred             C--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCC
Confidence            3  678999999999998544 4 5777  444321           1      2366777788999999  78888664

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.53  E-value=3.2e-14  Score=95.07  Aligned_cols=99  Identities=14%  Similarity=0.086  Sum_probs=74.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEe---eeCCCcEEEEcCe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV---YANPPAKRFDEGT   91 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~~~~~~~   91 (139)
                      ..|.|.+++.+|+|.|+|.+.|..+.. ....+.|.|..     ..+....+..|+.+.|.|.+   .+.|.+.+.|...
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~  158 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP-----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS  158 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC-----CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec-----cCCCccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence            679999999999999999999875443 35556666642     12335567789999999999   5668888888321


Q ss_pred             ---e-----------------------------------eecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         92 ---R-----------------------------------FDEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        92 ---~-----------------------------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                         .                                   .....|.|..+..+|.|.|  .+.|..|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  226 (268)
T 3mj6_A          159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE  226 (268)
T ss_dssp             CTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCce
Confidence               0                                   1245799999999999999  77786665

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.53  E-value=9e-14  Score=90.07  Aligned_cols=102  Identities=14%  Similarity=0.120  Sum_probs=71.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeCCCc--EEEE-
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KRFD-   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~~-   88 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+........|.|.    .+|.+........+..|+.+.|.|.+.+.+++  .+.| 
T Consensus        73 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  152 (212)
T 1q0x_L           73 AALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWK  152 (212)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEE
Confidence            3799999999999999999999765433455567774    46666554333234468999999999986544  6778 


Q ss_pred             -cCeeee------------------cceEEEEecCCCCceeE--EEEccc
Q psy12134         89 -EGTRFD------------------EGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        89 -~~~~~~------------------~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                       ++..+.                  ...|.|.....+|.|.|  .+.|..
T Consensus       153 k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~  202 (212)
T 1q0x_L          153 VDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG  202 (212)
T ss_dssp             ETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             ECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCC
Confidence             443321                  12467778888899999  566653

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.53  E-value=1e-13  Score=90.28  Aligned_cols=104  Identities=22%  Similarity=0.287  Sum_probs=75.0

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC---CeEEecCceEeeCCCCeEEEEEEe-eeCCCcEEEEcC
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEKQWIHTAPDMRAEIICNV-YANPPAKRFDEG   90 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~~~   90 (139)
                      ...|.|.+++.+|+|.|+|.+.+.. . .+..+.|.|..+   |.+...+. ..+..|+.+.|.|.+ .+.|.+.+.|..
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~~-~-~~~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~~~l~C~~~~g~P~~~v~W~~  147 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQD-F-DSAAVSLQVAAPYSKPSMTLEPN-KDLRPGNMVTITCSSYQGYPEAEVFWKD  147 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEECC-C-CCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEEC
T ss_pred             eEEEEECCcccccCEEEEEEEEeCC-C-ceEEEEEEEEcCCCCCcEEeCCC-ceecCCceEEEEEecccccCCCeEEEEc
Confidence            4679999999999999999999863 3 356667777654   55554433 356689999999999 788989998832


Q ss_pred             ---eee-----------ecc---eEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         91 ---TRF-----------DEG---TVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        91 ---~~~-----------~~~---~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                         ...           ..+   .|.+..+..+|.|.|  .+.|..|...
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~  197 (222)
T 4i0k_A          148 GQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQD  197 (222)
T ss_dssp             TTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEE
T ss_pred             CCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCc
Confidence               111           111   278889999999999  7888887654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.53  E-value=2.2e-13  Score=89.18  Aligned_cols=103  Identities=14%  Similarity=0.095  Sum_probs=67.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeee-CCCcEEEEc---Ce
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKRFDE---GT   91 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~~~---~~   91 (139)
                      ..|.|.+++.+|+|.|+|.+.|..+. .+..  +.+...+..........+..|..+.+.|.+.+ .|+|.+.|.   +.
T Consensus        83 ~~L~I~~v~~~D~G~Y~C~a~n~~~~-~~~~--v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~  159 (226)
T 4f80_A           83 AALRIHNVTASDSGKYLCYFQDGDFY-EKAL--VELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE  159 (226)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEE-EEEE--EEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSC
T ss_pred             EEEEEeeCchHHCeeEEEEEECCCcE-EEEE--EEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCce
Confidence            46999999999999999999997655 2444  44433332222223345567999999999988 488899882   22


Q ss_pred             ee----------ecc---eEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         92 RF----------DEG---TVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        92 ~~----------~~~---~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..          ..+   .+.+..+..+|.|.|  .|.|.+|...
T Consensus       160 ~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~  204 (226)
T 4f80_A          160 NIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLE  204 (226)
T ss_dssp             BCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEE
T ss_pred             EcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeE
Confidence            11          112   234556788999999  8899988654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.52  E-value=1.5e-13  Score=90.41  Aligned_cols=101  Identities=16%  Similarity=0.036  Sum_probs=73.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc----eeeeEEEEEecCC------------eEEecCceEeeCCCCeEEEEEEee
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES----TSKNFIVNVIYPP------------EVSVEKQWIHTAPDMRAEIICNVY   79 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~----~s~~~~l~v~~~p------------~~~~~~~~~~~~~g~~~~l~C~~~   79 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+..    ......|.|...+            .+...+....+.+|+++.|.|.+.
T Consensus        73 ~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  152 (238)
T 2p1y_A           73 FSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYE  152 (238)
T ss_dssp             CEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECC
T ss_pred             EEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEe
Confidence            479999999999999999999875421    1244567776543            455556666788999999999999


Q ss_pred             eCCCcEEEEcCe------e----------------e--e------cceEEEEecCCCCceeE--EEEcc
Q psy12134         80 ANPPAKRFDEGT------R----------------F--D------EGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        80 ~~p~~~~~~~~~------~----------------~--~------~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      +.|.+.++|-..      .                .  .      ...|.|.++..+|.|.|  .+.|.
T Consensus       153 ~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          153 NSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT  221 (238)
T ss_dssp             CTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             cCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence            999888888221      0                0  0      13688999999999999  56665

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.52  E-value=8.5e-16  Score=115.88  Aligned_cols=116  Identities=16%  Similarity=0.211  Sum_probs=0.0

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEE--ecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCe
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNV--IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGT   91 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v--~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~   91 (139)
                      .|.|.+++.+|+|.|+|.|.|..+.. .+....|.|  ..+|.+...+....+..|+.+.|.|.+.+.|++.+.|  ++.
T Consensus       626 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~  705 (772)
T 3v2a_R          626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNE  705 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCe
Confidence            49999999999999999999965432 223344444  6788887666666778899999999999999999888  332


Q ss_pred             ee----------ecceEEEEecCCCCceeE--EEEcccCCCCCCCCcceeeeeCCC
Q psy12134         92 RF----------DEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLRPSAYMADAP  135 (139)
Q Consensus        92 ~~----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~~~~~~~~~  135 (139)
                      .+          ....|.|..+..+|.|.|  .|.|.+|....   ...+.+.++|
T Consensus       706 ~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~---~~~l~V~~~p  758 (772)
T 3v2a_R          706 TLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV---EAFFIIEGAQ  758 (772)
T ss_dssp             --------------------------------------------------------
T ss_pred             ECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeE---EEEEEEECCC
Confidence            21          146799999999999999  89999998775   3334444444

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.52  E-value=1.3e-13  Score=97.96  Aligned_cols=114  Identities=12%  Similarity=0.046  Sum_probs=80.3

Q ss_pred             eEEEECCEEeeec-----------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe--cCCeEEecCc
Q psy12134          2 LVIFFSKIELLYN-----------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI--YPPEVSVEKQ   62 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~--~~p~~~~~~~   62 (139)
                      +.|+|+|.++...                 .+.|.|.++..+|+|.|+|.+.|..+..   .+.+.+.  ..+.....+.
T Consensus       150 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~~~~~~~~~~  226 (438)
T 1qgc_4          150 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS---PIVKSFNRNECEVMLVESG  226 (438)
T ss_dssp             EEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS---CEEEEEETTC-CCEEEEEC
T ss_pred             EEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC---ceecccccccceeEEecCC
Confidence            7899999876432                 1378999999999999999999987652   2333333  2222233334


Q ss_pred             eEeeCCCCeEEEEEEeeeCC--CcEEEEc----Ceee-------------------------------ecceEEEEecCC
Q psy12134         63 WIHTAPDMRAEIICNVYANP--PAKRFDE----GTRF-------------------------------DEGTVTAKVLQP  105 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p--~~~~~~~----~~~~-------------------------------~~~~l~i~~~~~  105 (139)
                      ...+.+|+.+.|.|.+.+.|  .+.+.|-    +...                               ....|.|..+..
T Consensus       227 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  306 (438)
T 1qgc_4          227 GGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRS  306 (438)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCCh
Confidence            45778999999999999988  5677772    2110                               012789999999


Q ss_pred             CCceeE--EEEcccC
Q psy12134        106 FSERTL--SVQDKIG  118 (139)
Q Consensus       106 ~d~g~y--~~~n~~g  118 (139)
                      +|.|.|  .+.|..|
T Consensus       307 ~D~G~Y~C~a~n~~~  321 (438)
T 1qgc_4          307 ADTAMYYCVRREDGG  321 (438)
T ss_dssp             GGCCEEEEEECCSSS
T ss_pred             hhCEEEEEEEEccCC
Confidence            999999  6666444

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.52  E-value=2.6e-13  Score=90.75  Aligned_cols=98  Identities=13%  Similarity=0.047  Sum_probs=76.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC----ceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCc-----EE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE----STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-----KR   86 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~----~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~~   86 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+.    .....+.|.|..+|.+...+....+.+|+++.|.|.+.+.|++     .+
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v  158 (256)
T 1nqb_A           79 AYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYL  158 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCE
T ss_pred             EEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEE
Confidence            37999999999999999999998652    1335678888888877777777788899999999999988865     77


Q ss_pred             EEc----Ceee------------------------ecceEEEEecCCCCceeEEE
Q psy12134         87 FDE----GTRF------------------------DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        87 ~~~----~~~~------------------------~~~~l~i~~~~~~d~g~y~~  113 (139)
                      +|.    +...                        ....|.|.++..+|.|.|.|
T Consensus       159 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C  213 (256)
T 1nqb_A          159 EWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC  213 (256)
T ss_dssp             EEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEE
Confidence            882    2211                        11368899999999999943

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.52  E-value=1.4e-14  Score=97.04  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=87.1

Q ss_pred             eEEEECCEEeeec--CCeEEEcccCCCCCEEEEEEEEcCC-CCc--eeeeEEEEEecCCeEEec--CceEeeCCCCeEEE
Q psy12134          2 LVIFFSKIELLYN--RESLDLDRVTLKLAGLYQCIASNNI-GES--TSKNFIVNVIYPPEVSVE--KQWIHTAPDMRAEI   74 (139)
Q Consensus         2 ~~W~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~n~~-~~~--~s~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l   74 (139)
                      ++|  +|.++...  .+.|.|..+..+|+|.|+|.+.|.. |..  .+..+.|.|.++|.+...  +....+.+|+.+.|
T Consensus       128 i~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l  205 (265)
T 2oz4_A          128 VTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTP  205 (265)
T ss_dssp             EEE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECC
T ss_pred             EEE--CCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEE
Confidence            678  66665332  3668899999999999999998644 553  237788999998877543  34557788999999


Q ss_pred             EEEeeeCCCcEEEE--cCe-eeecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         75 ICNVYANPPAKRFD--EGT-RFDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        75 ~C~~~~~p~~~~~~--~~~-~~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .|.+.+.|.+.+.|  ++. ....+.+  ..+..+|.|.|  .|.|.+|...
T Consensus       206 ~C~~~g~P~p~i~W~~~~~~~~~~g~~--~~v~~~d~G~Y~C~a~N~~G~~~  255 (265)
T 2oz4_A          206 MCQAWGNPLPELKCLKDGTFPLPIGES--VTVTRDLEGTYLCRARSTQGEVT  255 (265)
T ss_dssp             CCCCEEESCCEEEEEETTTEECCTTSC--EECCGGGCEEEEEEEEETTEEEE
T ss_pred             EeECccCCCCeEEEEECCcccCCCCcE--EEeehhhCeEEEEEEECCCCcEE
Confidence            99999999999977  443 2333333  34888999999  8899888654

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.52  E-value=2.9e-13  Score=89.81  Aligned_cols=95  Identities=11%  Similarity=0.025  Sum_probs=68.8

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC-------------------CeEEecCceEeeCCCCeEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP-------------------PEVSVEKQWIHTAPDMRAEIICN   77 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~-------------------p~~~~~~~~~~~~~g~~~~l~C~   77 (139)
                      .|.|.+++.+|+|.|.|.+.|..+........|.|..+                   +.+...+....+.+|+++.|.|.
T Consensus        75 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  154 (250)
T 3esu_F           75 SLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCK  154 (250)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEE
T ss_pred             EEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEE
Confidence            79999999999999999999876554445567777653                   22233344567789999999999


Q ss_pred             eeeCC--CcEEEEcCe----ee-------------------------------ecceEEEEecCCCCceeE
Q psy12134         78 VYANP--PAKRFDEGT----RF-------------------------------DEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        78 ~~~~p--~~~~~~~~~----~~-------------------------------~~~~l~i~~~~~~d~g~y  111 (139)
                      +.+.|  .+.++|-..    ..                               ....|.|.++..+|.|.|
T Consensus       155 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y  225 (250)
T 3esu_F          155 DSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVY  225 (250)
T ss_dssp             CCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             ecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEE
Confidence            98876  667788221    10                               011599999999999999

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.51  E-value=1.5e-14  Score=109.05  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=42.0

Q ss_pred             eEEEECCEEeee------------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecC--
Q psy12134          2 LVIFFSKIELLY------------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK--   61 (139)
Q Consensus         2 ~~W~~~~~~~~~------------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~--   61 (139)
                      +.|++++..+..                  ....|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+....  
T Consensus       258 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~  336 (772)
T 3v2a_R          258 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAFGSGM  336 (772)
T ss_dssp             EEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCE-EEEEEEEEEECCCC-------
T ss_pred             EEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcc-eeEEEEEEEeCCCeeEeccCC
Confidence            689998876321                  2357999999999999999999998876 5788999999988765332  


Q ss_pred             -ceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         62 -QWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        62 -~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                       ....+..|+.+.|.|.+.+.|++.+.|  ++..+       ....|.|..+..+|.|.|  .+.|..|...
T Consensus       337 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  408 (772)
T 3v2a_R          337 ESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEK  408 (772)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceEEEEEEECCcCeE
Confidence             345667899999999999999988888  33221       236789999999999999  7788877654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.51  E-value=2e-13  Score=88.45  Aligned_cols=101  Identities=16%  Similarity=0.116  Sum_probs=72.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE---ecCCeEEecCceEeeCCCCeEEEEEEeeeCCCc--EEEE--
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KRFD--   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~~--   88 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+........|.|   ..+|.+...+....+..|..+.|.|.+.+.+++  .+.|  
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k  150 (213)
T 3r06_A           71 SSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKV  150 (213)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEE
Confidence            479999999999999999999876544456667777   567777665544445568889999999986553  6677  


Q ss_pred             cCeeeec-------------------ceEEEEecCCCCceeE--EEEcc
Q psy12134         89 EGTRFDE-------------------GTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        89 ~~~~~~~-------------------~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      ++..+..                   ..|.+.....+|.|.|  .+.|.
T Consensus       151 ~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~  199 (213)
T 3r06_A          151 DGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHK  199 (213)
T ss_dssp             TTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEET
T ss_pred             CCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEec
Confidence            4433211                   1355666667789999  56665

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.51  E-value=1.5e-14  Score=97.65  Aligned_cols=98  Identities=14%  Similarity=0.083  Sum_probs=76.2

Q ss_pred             CCCCEEEEEEEEcCCCCceeeeEEEEEec--CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc--Cee--------
Q psy12134         25 LKLAGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE--GTR--------   92 (139)
Q Consensus        25 ~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~--~~~--------   92 (139)
                      ..|+|.|+|.+.|..+...+..+.|.|..  +|.+...+....+..|+++.|.|.+.+.|.+.+.|.  +..        
T Consensus       150 ~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~  229 (289)
T 3mjg_X          150 IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV  229 (289)
T ss_dssp             CCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCE
T ss_pred             eccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCccccc
Confidence            57999999999987665456667777775  565555544456788999999999999999999883  221        


Q ss_pred             ---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         93 ---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        93 ---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                               .....|.|..+..+|.|.|  .|.|.+|....
T Consensus       230 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  270 (289)
T 3mjg_X          230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD  270 (289)
T ss_dssp             EEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEE
T ss_pred             ccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCcee
Confidence                     1225799999999999999  88999888764

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.51  E-value=7.1e-13  Score=87.80  Aligned_cols=102  Identities=15%  Similarity=0.116  Sum_probs=71.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeee-CCCc-EEEE--cCe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPA-KRFD--EGT   91 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~~--~~~   91 (139)
                      ..|.|.+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+...+.. ....|..+.|.|.+.+ .|.+ .+.|  ++.
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~  159 (248)
T 3pv7_A           82 ASLRLPGIQLEEAGEYRCEVVVTPLK-AQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQ  159 (248)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred             EEEEeCCCCHHHCeEEEEEEEeCCcc-ceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence            34999999999999999999998765 577889999999988765543 3446778889999998 7887 7888  332


Q ss_pred             ---------------e-e--------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         92 ---------------R-F--------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        92 ---------------~-~--------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                                     . .        ....|.+.....+|.|.|  .+.|..+.
T Consensus       160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~  213 (248)
T 3pv7_A          160 KFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLH  213 (248)
T ss_dssp             SSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCS
T ss_pred             cCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCC
Confidence                           0 0        112456666778889999  77777665

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.50  E-value=2.2e-14  Score=100.32  Aligned_cols=117  Identities=17%  Similarity=0.134  Sum_probs=89.0

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCC-CCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEe-cCceEeeCCCCe
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTL-KLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV-EKQWIHTAPDMR   71 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~-~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~-~~~~~~~~~g~~   71 (139)
                      +.|+|+|.++..        .++.|.|.++.. +|+|.|+|.+.|..|...+..+.|.|...|.+.. ......+.+|+.
T Consensus        39 v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~  118 (382)
T 1cs6_A           39 YRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWG  118 (382)
T ss_dssp             EEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSC
T ss_pred             EEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCc
Confidence            789999988753        246899999997 9999999999998876556678888877665542 244567788999


Q ss_pred             EEEEEEe-eeCCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcccC
Q psy12134         72 AEIICNV-YANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        72 ~~l~C~~-~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      +.|.|.+ .+.|.+.+.|  ++..            ...+.|.|.++..+|.|.|  .+.|..|
T Consensus       119 v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g  182 (382)
T 1cs6_A          119 VMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID  182 (382)
T ss_dssp             EEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEET
T ss_pred             EEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccc
Confidence            9999996 4567788888  2221            1235799999999999999  6677664

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.50  E-value=7.8e-13  Score=90.05  Aligned_cols=106  Identities=17%  Similarity=0.125  Sum_probs=78.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEE--ecCceEeeCCCCeEEEEEEe-eeCCCcEEEEcC--
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS--VEKQWIHTAPDMRAEIICNV-YANPPAKRFDEG--   90 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~~~--   90 (139)
                      ..|.|.+++.+|+|.|+|++.|......+..+.+.+...|.+.  ..+.......|+.+.|.|.+ .+.|.+.+.|..  
T Consensus        74 ~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~  153 (308)
T 4fom_A           74 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDL  153 (308)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCS
T ss_pred             eEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECC
Confidence            5699999999999999999988654435677778887766553  33333444668899999975 688999999932  


Q ss_pred             eee-------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         91 TRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        91 ~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ...             ....|.|..+...|.|.|  .+.|..|...
T Consensus       154 ~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~  199 (308)
T 4fom_A          154 GEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKD  199 (308)
T ss_dssp             SBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred             cccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCc
Confidence            211             123588888899999999  7788766654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.50  E-value=2.1e-13  Score=89.53  Aligned_cols=103  Identities=15%  Similarity=0.082  Sum_probs=71.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE---ecCCeEEecCceEeeCCCCeEEEEEEeeeCCC--cEEEE--
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHTAPDMRAEIICNVYANPP--AKRFD--   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~~--   88 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+........|.|   ..+|.+........+..|+.+.|.|.+.+.++  +.+.|  
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k  173 (237)
T 3sob_L           94 FTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKV  173 (237)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEE
Confidence            569999999999999999998876543345556666   44666655443333445889999999988544  67888  


Q ss_pred             cCeeee-------------------cceEEEEecCCCCceeE--EEEcccC
Q psy12134         89 EGTRFD-------------------EGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        89 ~~~~~~-------------------~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      ++....                   ...|.+.....+|.|.|  .+.|...
T Consensus       174 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  224 (237)
T 3sob_L          174 DNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  224 (237)
T ss_dssp             TTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             CCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCC
Confidence            333221                   12466777788899999  6677643

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.50  E-value=9.4e-14  Score=96.82  Aligned_cols=87  Identities=14%  Similarity=0.078  Sum_probs=70.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC--CCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcE--EEE--c
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN--IGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK--RFD--E   89 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~--~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~~--~   89 (139)
                      ..|.|.+++.+|+|.|+|.+.|.  .|. .+..+.|.|..             ..|+.+.|.|.+.+.|++.  +.|  +
T Consensus       255 ~~L~i~~v~~~d~G~Y~C~a~n~~~~g~-~~~~~~l~V~~-------------v~g~~~~l~C~~~g~p~p~~~i~W~~~  320 (363)
T 1wio_A          255 LHLTLPQALPQYAGSGNLTLALEAKTGK-LHQEVNLVVMR-------------ATQLQKNLTCEVWGPTSPKLMLSLKLE  320 (363)
T ss_dssp             CEEEESSBCGGGCEEEEEEECBTTTTCC-EEEEEEEEEEE-------------ECCCSSSEEEEEESSCCTTCCEEEECS
T ss_pred             eEEEEccCCcCcCcEEEEEEEEhhhcCe-EEEEEeEEEEE-------------ecCCCeeEEEEEccccCCCccEEEEeC
Confidence            38999999999999999999999  886 67888888771             1288999999999998887  788  3


Q ss_pred             Ceee-ecceEEEEecCCCCceeEEEEcc
Q psy12134         90 GTRF-DEGTVTAKVLQPFSERTLSVQDK  116 (139)
Q Consensus        90 ~~~~-~~~~l~i~~~~~~d~g~y~~~n~  116 (139)
                      +..+ ....|.|..+..+|.|.|.|.-.
T Consensus       321 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~  348 (363)
T 1wio_A          321 NKEAKVSKREKAVWVLNPEAGMWQCLLS  348 (363)
T ss_dssp             SSSCSEEESSSEEEESSCCSEEEEEEEC
T ss_pred             CCceeeeeeeeeeeeccccceeEEEEEe
Confidence            3322 34567889999999999954444

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.49  E-value=7.4e-13  Score=87.24  Aligned_cols=100  Identities=9%  Similarity=-0.025  Sum_probs=73.8

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC------eEEecCceEeeCCCCeEEEEEEeeeCCC--cEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP------EVSVEKQWIHTAPDMRAEIICNVYANPP--AKRFD   88 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~~   88 (139)
                      .|.|.+++.+|+|.|.|.+.|..+........|.|..++      .+...+....+.+|+++.|.|.+.+.|.  +.+.|
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W  155 (240)
T 1moe_A           76 TLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHW  155 (240)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEE
T ss_pred             EEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEE
Confidence            799999999999999999999865434566778887643      2334455567789999999999998874  46777


Q ss_pred             cCe----ee-------------------------e------cceEEEEecCCCCceeEEEEcc
Q psy12134         89 EGT----RF-------------------------D------EGTVTAKVLQPFSERTLSVQDK  116 (139)
Q Consensus        89 ~~~----~~-------------------------~------~~~l~i~~~~~~d~g~y~~~n~  116 (139)
                      ...    ..                         .      ...|.|.++..+|.|.|.|.-.
T Consensus       156 ~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  218 (240)
T 1moe_A          156 VKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPF  218 (240)
T ss_dssp             EEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             EEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEE
Confidence            221    10                         0      1358999999999999944443

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.49  E-value=2e-13  Score=96.98  Aligned_cols=105  Identities=16%  Similarity=0.160  Sum_probs=76.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec---CCeEEecCceEeeCCCCeEEEEEEeee-CCCc-EEEE--
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYA-NPPA-KRFD--   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~~--   88 (139)
                      ..|.|.+++.+|+|.|+|.+.|..+...+....|.|..   +|.+...........|..+.|.|.+.+ .|++ .+.|  
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k  154 (438)
T 1qgc_4           75 FTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI  154 (438)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             EEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEE
Confidence            47999999999999999999998765445566777753   666654332223345789999999987 5666 6777  


Q ss_pred             cCeeee-------------------cceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         89 EGTRFD-------------------EGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        89 ~~~~~~-------------------~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      ++..+.                   ...|.|..+..+|.|.|  .+.|..|..
T Consensus       155 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  207 (438)
T 1qgc_4          155 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  207 (438)
T ss_dssp             TTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             CCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC
Confidence            443321                   12688889999999999  777876653

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.49  E-value=6.2e-13  Score=88.65  Aligned_cols=97  Identities=10%  Similarity=0.075  Sum_probs=72.0

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCC---ceeeeEEEEEecC--------------CeEEecCceEeeCCCCeEEEEEEee
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYP--------------PEVSVEKQWIHTAPDMRAEIICNVY   79 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~---~~s~~~~l~v~~~--------------p~~~~~~~~~~~~~g~~~~l~C~~~   79 (139)
                      .|.|.+++.+|+|.|.|.+.|..+.   .......|.|..+              +.+...+....+.+|+++.|.|.+.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~  166 (257)
T 3gkz_A           87 YLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSAS  166 (257)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEES
T ss_pred             EEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEc
Confidence            6999999999999999999986321   1345567777754              5566666667888999999999999


Q ss_pred             eCCCc-EEEEcC----eee------------------------ecceEEEEecCCCCceeEEE
Q psy12134         80 ANPPA-KRFDEG----TRF------------------------DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        80 ~~p~~-~~~~~~----~~~------------------------~~~~l~i~~~~~~d~g~y~~  113 (139)
                      +.+.+ .++|-.    ...                        ....|.|.++..+|.|.|.|
T Consensus       167 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C  229 (257)
T 3gkz_A          167 SSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFC  229 (257)
T ss_dssp             SCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             cCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEE
Confidence            88877 788821    110                        11248999999999999933

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.49  E-value=3.1e-13  Score=89.84  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=71.6

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec---CCeEEecCceEeeCCCCeEEEEEEeeeC-CC-cEEEE--c
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYAN-PP-AKRFD--E   89 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~~--~   89 (139)
                      .|.|.+++.+|+|.|.|.+.|..+........|.|..   +|.+...........|..+.|.|.+.+. |+ +.+.|  +
T Consensus       114 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~  193 (254)
T 2c1o_A          114 TLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID  193 (254)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEES
T ss_pred             EEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEEC
Confidence            7999999999999999999987654334445666654   5666643332223357899999999884 44 34777  4


Q ss_pred             Ceeee-------------------cceEEEEecCCCCceeE--EEEcccC
Q psy12134         90 GTRFD-------------------EGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        90 ~~~~~-------------------~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      +..+.                   ...|.|..+..+|.|.|  .|.|...
T Consensus       194 g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  243 (254)
T 2c1o_A          194 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  243 (254)
T ss_dssp             SSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             CCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCC
Confidence            33221                   23588888889999999  6777644

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.49  E-value=1.4e-13  Score=89.32  Aligned_cols=105  Identities=15%  Similarity=0.160  Sum_probs=72.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC----CceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeee-CCCc-E
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG----ESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPA-K   85 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~----~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~   85 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+    ......+.|.|.    .+|.+...........|+.+.|.|.+.+ .|++ .
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~  154 (218)
T 3s96_B           75 RYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVT  154 (218)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCE
T ss_pred             EEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeE
Confidence            4599999999999999999998765    123456778887    5666655333333445789999999998 4655 6


Q ss_pred             EEE--cCeeee-----------c------ceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         86 RFD--EGTRFD-----------E------GTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        86 ~~~--~~~~~~-----------~------~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      +.|  ++..+.           .      ..|.+.....+|.|.|  .+.|..|..
T Consensus       155 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~  210 (218)
T 3s96_B          155 VAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTV  210 (218)
T ss_dssp             EEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEE
T ss_pred             EEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcc
Confidence            778  443321           1      1255666667789999  778776543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.48  E-value=7.5e-13  Score=83.65  Aligned_cols=96  Identities=14%  Similarity=0.111  Sum_probs=68.1

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC---CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--c
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--E   89 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~   89 (139)
                      .+.|.|.+++.+|+|.|.|.+.|..+   +..+.|.|..+   |.+.....        ...|.|.+.+.|.+.+.|  +
T Consensus        59 ~~sL~I~~v~~~DsG~Y~C~~~n~~~---~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~  127 (171)
T 1ccz_A           59 SGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQG  127 (171)
T ss_dssp             TCCEEECSCCGGGCEEEEEECTTCCS---CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEET
T ss_pred             CCeEEECCCChhhCceEEEEEeCCCC---cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEEC
Confidence            47899999999999999999998766   57778888764   33332211        137999999989899888  4


Q ss_pred             Ceeee-cceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         90 GTRFD-EGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        90 ~~~~~-~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +..+. ...+.+......|.|.|  .|.|.+|...
T Consensus       128 ~~~l~~~~~~~l~~~~~~~~g~Y~C~a~N~~~~~~  162 (171)
T 1ccz_A          128 KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES  162 (171)
T ss_dssp             TEEEEEESSSEEEEECSCCSSCEEEEEEETTEEEE
T ss_pred             CEECcCCcceEEEEeccCCCceEEEEEEcccCccc
Confidence            54432 12223333347788899  7889988754

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.48  E-value=2e-13  Score=90.49  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe-------------EEecCceEeeCCCCeEEEEEEeeeCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-------------VSVEKQWIHTAPDMRAEIICNVYANP   82 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~-------------~~~~~~~~~~~~g~~~~l~C~~~~~p   82 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+........|.|..+|.             ....+....+.+|+++.|.|.+.+.|
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~  150 (242)
T 2znx_A           71 FTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDS  150 (242)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSC
T ss_pred             EEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccc
Confidence            47999999999999999999987543334556788876542             22222223578999999999999876


Q ss_pred             --CcEEEEc----Ceee------------------------------ecceEEEEecCCCCceeE--EEEc
Q psy12134         83 --PAKRFDE----GTRF------------------------------DEGTVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        83 --~~~~~~~----~~~~------------------------------~~~~l~i~~~~~~d~g~y--~~~n  115 (139)
                        .+.++|-    +...                              ....|.|.++..+|.|.|  .+.|
T Consensus       151 ~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  221 (242)
T 2znx_A          151 ITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXD  221 (242)
T ss_dssp             GGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             cCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccC
Confidence              3567772    1110                              012789999999999999  5555

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.48  E-value=1.9e-13  Score=91.50  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=83.3

Q ss_pred             eEEEECCEEeee----cCCeEEEccc---CCCCCE--EEEEEEEcCCCCceeeeEEEEEec--CCeEEecCceEeeCCCC
Q psy12134          2 LVIFFSKIELLY----NRESLDLDRV---TLKLAG--LYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDM   70 (139)
Q Consensus         2 ~~W~~~~~~~~~----~~~~L~i~~v---~~~d~G--~Y~C~~~n~~~~~~s~~~~l~v~~--~p~~~~~~~~~~~~~g~   70 (139)
                      ++|+|++.++..    .+..+.+..+   +.+|+|  .|+|.+.|..+. .+..+.|.|..  +|.+...  ...+.+|+
T Consensus        38 v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~-~~~~~~l~V~~~p~p~~~~~--~~~v~~G~  114 (265)
T 2oz4_A           38 VHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QETLQTVTIYSFPAPNVILT--KPEVSEGT  114 (265)
T ss_dssp             EEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEE-EEEEEEEEEECCCCCEEEES--CSEEETTC
T ss_pred             EEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCC-cEEEEEEEEeCCCCceeecC--CceecCCC
Confidence            789999987643    3456666655   778888  499999998877 57888899976  4444433  33566799


Q ss_pred             eEEEEEEeeeCCCcEEEEcCeee----ecceEEEEecCCCCceeE--EEEccc-CCC
Q psy12134         71 RAEIICNVYANPPAKRFDEGTRF----DEGTVTAKVLQPFSERTL--SVQDKI-GPG  120 (139)
Q Consensus        71 ~~~l~C~~~~~p~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~-g~~  120 (139)
                      .+.|.|.+.  |.+.+.|++...    ....|.+..+..+|.|.|  .+.|.. |..
T Consensus       115 ~v~l~C~~~--p~~~i~W~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~  169 (265)
T 2oz4_A          115 EVTVKCEAH--PRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQL  169 (265)
T ss_dssp             EEEEEEECC--TTSEEEESSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSE
T ss_pred             cEEEEEEcc--CCCEEEECCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCc
Confidence            999999999  888889954432    234678888889999999  565543 543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.47  E-value=9e-13  Score=87.88  Aligned_cols=97  Identities=12%  Similarity=0.085  Sum_probs=74.4

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCC---CceeeeEEEEEec----------------CCeEEecCceEeeCCCCeEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIG---ESTSKNFIVNVIY----------------PPEVSVEKQWIHTAPDMRAEIICN   77 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~---~~~s~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~   77 (139)
                      .|.|.+++.+|+|.|.|.+.|..+   ........|.|..                +|.+...+....+.+|+++.|.|.
T Consensus        82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  161 (256)
T 3umt_A           82 YLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCR  161 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEE
Confidence            499999999999999999998721   1134566788874                566667677778899999999999


Q ss_pred             eeeCCCcEEEEcC----eee------------------------ecceEEEEecCCCCceeEEE
Q psy12134         78 VYANPPAKRFDEG----TRF------------------------DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        78 ~~~~p~~~~~~~~----~~~------------------------~~~~l~i~~~~~~d~g~y~~  113 (139)
                      +.+.|.+.++|-+    ...                        ....|.|.++..+|.|.|.|
T Consensus       162 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C  225 (256)
T 3umt_A          162 ASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYC  225 (256)
T ss_dssp             ESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEE
T ss_pred             EecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEE
Confidence            9998888888822    110                        01249999999999999933

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.47  E-value=5.1e-13  Score=89.18  Aligned_cols=102  Identities=15%  Similarity=0.063  Sum_probs=74.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc---eeeeEEEEEec--------------------CCeEEecCceEeeCCCCeE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES---TSKNFIVNVIY--------------------PPEVSVEKQWIHTAPDMRA   72 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~---~s~~~~l~v~~--------------------~p~~~~~~~~~~~~~g~~~   72 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+..   ......|.|..                    +|.+...+....+.+|+++
T Consensus        76 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v  155 (256)
T 3tf7_C           76 FHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENV  155 (256)
T ss_dssp             EEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCE
T ss_pred             EEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcE
Confidence            469999999999999999999876421   23445677764                    4566677777777899999


Q ss_pred             EEEEEeeeCCCcEEEEcC----ee----------------------------eecceEEEEecCCCCceeE--EEEcccC
Q psy12134         73 EIICNVYANPPAKRFDEG----TR----------------------------FDEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        73 ~l~C~~~~~p~~~~~~~~----~~----------------------------~~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      .|.|.+.+. .+.++|-+    ..                            .....|.|.++..+|.|.|  .+.|..|
T Consensus       156 ~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          156 TLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG  234 (256)
T ss_dssp             EECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred             EEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence            999999876 55677721    10                            0123699999999999999  5666643

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.47  E-value=1.4e-12  Score=84.68  Aligned_cols=121  Identities=23%  Similarity=0.181  Sum_probs=85.7

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCC
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD   69 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g   69 (139)
                      +.|+|++..+...            .+.|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|........  ...+
T Consensus        50 i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~P~~p~~~~~--~~~~  126 (215)
T 3mtr_A           50 ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQADTPSSPSIDQV--EPYS  126 (215)
T ss_dssp             EEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCE-EEEEEEEEECCCCCCCEEEEE--EEET
T ss_pred             EEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCc-eEEEEEEEECCCCCCCcceEE--EEec
Confidence            7899999876543            367999999999999999999999988 478888888876543211111  1235


Q ss_pred             CeEEEEEEee----eCCCcE--EEE--cCee----e--------ecceEEEEecCCCCceeE--EEEcccCCCCCCCC
Q psy12134         70 MRAEIICNVY----ANPPAK--RFD--EGTR----F--------DEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNL  125 (139)
Q Consensus        70 ~~~~l~C~~~----~~p~~~--~~~--~~~~----~--------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~  125 (139)
                      ..+.+.|...    +.|...  +.|  ++..    .        ....+.|..+...+.|.|  .|.|.+|.+..|..
T Consensus       127 ~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~  204 (215)
T 3mtr_A          127 STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA  204 (215)
T ss_dssp             TEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCC
T ss_pred             ceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccc
Confidence            6788888632    223322  234  2211    1        126799999999999999  89999999887743

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.47  E-value=6.6e-13  Score=85.96  Aligned_cols=102  Identities=20%  Similarity=0.109  Sum_probs=72.2

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-EEEE--
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KRFD--   88 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~~--   88 (139)
                      .|.|.+++.+|+|.|.|.+.|.. . ......|.|.    .+|.+........+..|+.+.|.|.+.+. |.+ .+.|  
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~-~-~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  156 (210)
T 3d9a_H           79 YLDLNSVTTEDTATYYCANWDGD-Y-WGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  156 (210)
T ss_dssp             EEEECSCCGGGCEEEEEEETTSS-C-BCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             EEEECCCCcccCEEEEEEEecCc-c-cccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEee
Confidence            79999999999999999999864 1 2344567776    34655543322345689999999999987 777 7889  


Q ss_pred             cCeee---------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         89 EGTRF---------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        89 ~~~~~---------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ++...               ....|.|.....++ |.|  .+.|..|...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  205 (210)
T 3d9a_H          157 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  205 (210)
T ss_dssp             GTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred             CCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            33210               12347777777766 999  7888877643

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.47  E-value=8.7e-13  Score=87.82  Aligned_cols=99  Identities=9%  Similarity=-0.016  Sum_probs=69.5

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCC--ceeeeEEEEEecCC---------------------eEEecCceEeeCCCCeEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVIYPP---------------------EVSVEKQWIHTAPDMRAE   73 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~--~~s~~~~l~v~~~p---------------------~~~~~~~~~~~~~g~~~~   73 (139)
                      .|.|.+++.+|+|.|.|.+.|..+.  .......|.|..++                     .+...+ ...+.+|+++.
T Consensus        75 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~G~~v~  153 (256)
T 3ux9_B           75 SLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESG-GGLVQPGGSLR  153 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEEC-CEEECTTCCEE
T ss_pred             EEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCC-CeEEcCCCeEE
Confidence            6999999999999999999986542  13455678887654                     233333 34578999999


Q ss_pred             EEEEeeeCC--CcEEEEcCe----ee-------------------------------ecceEEEEecCCCCceeE--EEE
Q psy12134         74 IICNVYANP--PAKRFDEGT----RF-------------------------------DEGTVTAKVLQPFSERTL--SVQ  114 (139)
Q Consensus        74 l~C~~~~~p--~~~~~~~~~----~~-------------------------------~~~~l~i~~~~~~d~g~y--~~~  114 (139)
                      |.|.+.+.+  .+.++|-+.    ..                               ....|.|.++..+|.|.|  .+.
T Consensus       154 L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  233 (256)
T 3ux9_B          154 LSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARY  233 (256)
T ss_dssp             EEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            999999876  567778211    10                               012499999999999999  455


Q ss_pred             cc
Q psy12134        115 DK  116 (139)
Q Consensus       115 n~  116 (139)
                      |.
T Consensus       234 ~~  235 (256)
T 3ux9_B          234 ID  235 (256)
T ss_dssp             ET
T ss_pred             cC
Confidence            53

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.47  E-value=2.2e-12  Score=88.51  Aligned_cols=105  Identities=14%  Similarity=0.144  Sum_probs=78.4

Q ss_pred             CCeEEEcccCCCCCEEEEEEE-EcCCCCceeeeEEEEEecCCeEE--ecCceEeeCCC---CeEEEEEE-eeeCCCcEEE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIA-SNNIGESTSKNFIVNVIYPPEVS--VEKQWIHTAPD---MRAEIICN-VYANPPAKRF   87 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~-~n~~~~~~s~~~~l~v~~~p~~~--~~~~~~~~~~g---~~~~l~C~-~~~~p~~~~~   87 (139)
                      ...|.|.+++.+|+|.|+|.+ .+..+. .+..+.|.|..+|.+.  .......+..|   +.+.|.|. ..+.|.+.+.
T Consensus        91 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~  169 (331)
T 3u83_A           91 DGTIRLSRLELEDEGVYICEFATFPTGN-RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVS  169 (331)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEE
T ss_pred             CceEEEcccCcccCcEEEEEEEecCCCc-cEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEE
Confidence            367999999999999999984 444454 6788999999988774  34455566777   78999998 8889999998


Q ss_pred             EcC----ee------------eecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         88 DEG----TR------------FDEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        88 ~~~----~~------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      |..    ..            .....|.|..+..+|.|.|  .+.|..|..
T Consensus       170 W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  220 (331)
T 3u83_A          170 WETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF  220 (331)
T ss_dssp             EEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEE
T ss_pred             EEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcc
Confidence            822    11            0123466667789999999  677776653

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.47  E-value=4.1e-13  Score=97.62  Aligned_cols=118  Identities=14%  Similarity=0.025  Sum_probs=83.7

Q ss_pred             eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE----EecCCeEEecC
Q psy12134          2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN----VIYPPEVSVEK   61 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~----v~~~p~~~~~~   61 (139)
                      ++|+|+|.++...          +      +.|.|.++..+|+|.|+|.+.|..+.. ...+.+.    +..+|.+....
T Consensus       148 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~P~v~~~~  226 (523)
T 2rcj_C          148 VAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV-EKTVAPTECSASTKGPSVFPLA  226 (523)
T ss_pred             EEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccc-ccceeeeecCCCCcCCEEEecC
Confidence            7899998765321          1      359999999999999999999987652 3344332    23456665333


Q ss_pred             ceEeeCCCCeEEEEEEeeeC-CCc-EEEE--cCeee----------e------cceEEEEecCCCCceeE--EEEcccCC
Q psy12134         62 QWIHTAPDMRAEIICNVYAN-PPA-KRFD--EGTRF----------D------EGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~-p~~-~~~~--~~~~~----------~------~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      ....+..|+.+.|.|.+.+. |.+ .+.|  ++...          .      ...|.|..+..+| |.|  .|.|..|.
T Consensus       227 ~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~  305 (523)
T 2rcj_C          227 PSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  305 (523)
T ss_pred             CCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCC
Confidence            33355789999999999886 766 6778  33211          1      1268899999999 999  78898887


Q ss_pred             CC
Q psy12134        120 GP  121 (139)
Q Consensus       120 ~~  121 (139)
                      ..
T Consensus       306 ~~  307 (523)
T 2rcj_C          306 TK  307 (523)
T ss_pred             cc
Confidence            54

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.46  E-value=1.4e-12  Score=89.12  Aligned_cols=106  Identities=16%  Similarity=0.143  Sum_probs=78.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEee-eCCCcEEEE--cCee
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKRFD--EGTR   92 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~~--~~~~   92 (139)
                      ..|.|.+++.+|+|.|+|++.+......+..+.|.+..+|.+........+..+..+.+.|.+. +.|++.+.|  ++..
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~  158 (313)
T 4fqp_A           79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG  158 (313)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCC
T ss_pred             eEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcc
Confidence            5699999999999999999875443336778888888888876555555666788889999765 778888888  3222


Q ss_pred             e---------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         93 F---------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        93 ~---------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .               ....|.+......|.|.|  .+.|..+...
T Consensus       159 ~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~  204 (313)
T 4fqp_A          159 MPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKP  204 (313)
T ss_dssp             EEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSC
T ss_pred             ccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCcc
Confidence            1               112467777788899999  6777765544

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.46  E-value=3.5e-13  Score=90.04  Aligned_cols=101  Identities=17%  Similarity=0.096  Sum_probs=74.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC------Cc--eeeeEEEEEecCC---------------eEEecCceEeeCCCCeE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG------ES--TSKNFIVNVIYPP---------------EVSVEKQWIHTAPDMRA   72 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~------~~--~s~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~   72 (139)
                      ..|.|.+++.+|+|.|.|.+.|..|      ..  ......|.|...+               .+...+....+.+|+++
T Consensus        78 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v  157 (257)
T 1f3r_B           78 VFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRV  157 (257)
T ss_dssp             EEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCE
T ss_pred             EEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCE
Confidence            3799999999999999999999854      11  2245678887653               12334555677899999


Q ss_pred             EEEEEeeeCCCcEEEEc----Ceee------------------------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         73 EIICNVYANPPAKRFDE----GTRF------------------------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        73 ~l~C~~~~~p~~~~~~~----~~~~------------------------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      .|.|.+.+.|++.++|-    +...                        ....|.|.++..+|.|.|  .+.|.
T Consensus       158 ~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  231 (257)
T 1f3r_B          158 TLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNN  231 (257)
T ss_dssp             EEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESS
T ss_pred             EEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCC
Confidence            99999999888888882    2211                        112689999999999999  66664

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.45  E-value=4.4e-14  Score=91.52  Aligned_cols=106  Identities=16%  Similarity=0.150  Sum_probs=73.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc--eeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeC-CC-cEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYAN-PP-AKRF   87 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~--~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~   87 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+..  ......|.|.    .+|.+........+..|+.+.|.|.+.+. |+ +.+.
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  148 (212)
T 1nfd_E           69 ATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVT  148 (212)
T ss_dssp             EEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEE
T ss_pred             EEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEE
Confidence            479999999999999999999732221  2344556663    45666543333334568999999999987 44 6787


Q ss_pred             E--cCeeee-----------------cceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         88 D--EGTRFD-----------------EGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        88 ~--~~~~~~-----------------~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      |  ++..+.                 ...|.|..+..+|.|.|  .|.|..+...
T Consensus       149 W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  203 (212)
T 1nfd_E          149 WKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE  203 (212)
T ss_dssp             EEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred             EEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEE
Confidence            8  443321                 12377888888999999  7788766533

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.45  E-value=1.3e-12  Score=88.07  Aligned_cols=100  Identities=9%  Similarity=-0.061  Sum_probs=71.1

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC--------------eEEecCceEeeCCCCeEEEEEEeeeCC
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP--------------EVSVEKQWIHTAPDMRAEIICNVYANP   82 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p--------------~~~~~~~~~~~~~g~~~~l~C~~~~~p   82 (139)
                      .|.|.+++.+|+|.|.|.+.|..+........|.|..+|              .....+....+.+|+++.|.|.+.+.|
T Consensus        83 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~  162 (276)
T 3auv_A           83 TLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFT  162 (276)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSC
T ss_pred             EEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCcc
Confidence            799999999999999999998755433445677776643              122333456778999999999999876


Q ss_pred             --CcEEEEcCe----ee-------------------------e------cceEEEEecCCCCceeE--EEEcc
Q psy12134         83 --PAKRFDEGT----RF-------------------------D------EGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        83 --~~~~~~~~~----~~-------------------------~------~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                        .+.++|-..    ..                         .      ...|.|.++..+|.|.|  .+.|.
T Consensus       163 ~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          163 ISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             GGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence              467788221    00                         0      12799999999999999  66776

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.45  E-value=3.6e-12  Score=86.27  Aligned_cols=97  Identities=15%  Similarity=0.148  Sum_probs=71.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC----ceeeeEEEEEecCC---------------eEEecCceEeeCCCCeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE----STSKNFIVNVIYPP---------------EVSVEKQWIHTAPDMRAEIIC   76 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~----~~s~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C   76 (139)
                      ..|.|.+++.+|+|.|.|.+.|..|.    .......|.|...|               .+...+....+.+|+++.|.|
T Consensus       105 ~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C  184 (282)
T 1qok_A          105 AYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITC  184 (282)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEE
T ss_pred             EEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEE
Confidence            47999999999999999999998651    12345577777643               344556666788999999999


Q ss_pred             EeeeCCCcEEEEc----Ceee------------------------ecceEEEEecCCCCceeEEE
Q psy12134         77 NVYANPPAKRFDE----GTRF------------------------DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        77 ~~~~~p~~~~~~~----~~~~------------------------~~~~l~i~~~~~~d~g~y~~  113 (139)
                      .+.+.| +.++|-    +...                        ....|.|.++..+|.|.|.|
T Consensus       185 ~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C  248 (282)
T 1qok_A          185 SASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYC  248 (282)
T ss_dssp             EESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEE
Confidence            999888 777772    2211                        12368999999999999933

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.45  E-value=7.9e-13  Score=88.27  Aligned_cols=98  Identities=11%  Similarity=0.002  Sum_probs=72.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC--ceeeeEEEEEecC-----------------CeEEecCceEeeCCCCeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVIYP-----------------PEVSVEKQWIHTAPDMRAEIIC   76 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~--~~s~~~~l~v~~~-----------------p~~~~~~~~~~~~~g~~~~l~C   76 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+.  .......|.|...                 +.+...+....+.+|+++.|.|
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C  158 (259)
T 3omz_A           79 LRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNC  158 (259)
T ss_dssp             CEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECC
T ss_pred             EEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEE
Confidence            46999999999999999999987652  2345567777653                 4556666667788999999999


Q ss_pred             EeeeC-CCcEEEEcCe----e---e-----------------------ecceEEEEecCCCCceeEEE
Q psy12134         77 NVYAN-PPAKRFDEGT----R---F-----------------------DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        77 ~~~~~-p~~~~~~~~~----~---~-----------------------~~~~l~i~~~~~~d~g~y~~  113 (139)
                      .+.+. |.+.++|-..    .   .                       ....|.|.++..+|.|.|.|
T Consensus       159 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C  226 (259)
T 3omz_A          159 LYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFC  226 (259)
T ss_dssp             EEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEE
T ss_pred             ECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEE
Confidence            98875 6777888211    0   0                       11359999999999999933

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.45  E-value=7.5e-14  Score=91.66  Aligned_cols=102  Identities=14%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec---CCeEEecCceEeeCCCCeEEEEEEeeeCCCc--EEEE--c
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KRFD--E   89 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~~--~   89 (139)
                      .|.|.+++.+|+|.|.|.+.|..+........|.|..   +|.+...+....+..|+.+.|.|.+.+.+++  .+.|  +
T Consensus        94 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  173 (233)
T 3bqu_C           94 VFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID  173 (233)
T ss_dssp             EEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC
T ss_pred             EEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEEC
Confidence            7999999999999999999987654333344566654   5666653332233468999999999985443  5778  3


Q ss_pred             Ceeee-------------------cceEEEEecCCCCceeE--EEEcccC
Q psy12134         90 GTRFD-------------------EGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        90 ~~~~~-------------------~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      +....                   ...|.|.....+|.|.|  .+.|...
T Consensus       174 g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          174 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             -----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             CeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            32110                   12467777778899999  6666633

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.45  E-value=1.3e-14  Score=99.13  Aligned_cols=118  Identities=9%  Similarity=0.053  Sum_probs=84.8

Q ss_pred             eEEEECCEEee----------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe-cCCeEEecC---ceEeeC
Q psy12134          2 LVIFFSKIELL----------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-YPPEVSVEK---QWIHTA   67 (139)
Q Consensus         2 ~~W~~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~-~~p~~~~~~---~~~~~~   67 (139)
                      +.|+|++....          ..+..|.|.+++.+|+|.|+|.+.|..+.. ...+.+.+. .+|.+...+   ....+.
T Consensus        38 v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~v~v~~~~p~~~~~~~~~~~~~~~  116 (315)
T 1itb_B           38 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLP  116 (315)
T ss_dssp             CCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCC-CEECCCEEECCCTTSSSCGGGEEEEEEE
T ss_pred             EEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEE-EEEEEEEEeCCCCCcccccccccceEEe
Confidence            68999986432          124689999999999999999999987663 444444433 334332111   224567


Q ss_pred             CCCeEEEEEEe------eeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEE-cccCCC
Q psy12134         68 PDMRAEIICNV------YANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQ-DKIGPG  120 (139)
Q Consensus        68 ~g~~~~l~C~~------~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~-n~~g~~  120 (139)
                      .|+++.|.|.+      .+.|.+.+.|  ++..         ...+.|.|..+..+|.|.|  .+. |..|..
T Consensus       117 ~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~  189 (315)
T 1itb_B          117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ  189 (315)
T ss_dssp             TTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             cCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcE
Confidence            89999999998      8888888878  4333         2356899999999999999  666 666665

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.44  E-value=3.9e-13  Score=95.98  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             EEEECCEEeee-cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEE-ecCceEeeCCCCeEEEEEEeee
Q psy12134          3 VIFFSKIELLY-NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS-VEKQWIHTAPDMRAEIICNVYA   80 (139)
Q Consensus         3 ~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~   80 (139)
                      .|+|++..+.. ....|.|.+++. |+| |+|.+.+..+. .+..+.|.|..+|.+. ..+....+.+|+.+.|.|.+.+
T Consensus        36 ~w~k~~~~~~~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~-~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g  112 (450)
T 1z7z_I           36 PLPKKELLLPGNNRKVYELSNVQE-DSQ-PMCYSNCPDGQ-STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG  112 (450)
T ss_dssp             SSCEEECCSSTTTEEEEEEEEECS-CBC-CEEEEEETTEE-EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEEC
T ss_pred             eeeecceEecCCCceEEEEEeccc-CCe-eEEEEeCCCCc-ceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecC
Confidence            68887653321 235799999987 999 99999765443 5778889998887765 4555567789999999999999


Q ss_pred             CCCc---EEEE--cCeee---------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         81 NPPA---KRFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        81 ~p~~---~~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .|++   .+.|  ++..+         ....|.|..+..+|.|.|  .+.|..|...
T Consensus       113 ~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  169 (450)
T 1z7z_I          113 GAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQG  169 (450)
T ss_dssp             CBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGT
T ss_pred             CCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCC
Confidence            8887   7777  44432         134799999999999999  7888877543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.44  E-value=9.5e-13  Score=89.37  Aligned_cols=133  Identities=16%  Similarity=0.061  Sum_probs=88.2

Q ss_pred             eEEEECCEEeeec----------CCeEEEcc-cCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCC
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDR-VTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDM   70 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~-v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~   70 (139)
                      +.|++++..+...          ...|.|.+ +...|+|.|+|.+.|..|. .+..+.|.|...|....... .....+.
T Consensus       136 i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~p~~~~-~~~~~~~  213 (305)
T 2nzi_A          136 ITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVADVPDPPRGVK-VSDVSRD  213 (305)
T ss_dssp             EEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEE-EEEEEEEEEEBCCCCCEEEE-EESCCSS
T ss_pred             EEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCc-eeeEEEEEEecCCCCCCCce-eeeccCC
Confidence            7899988765422          25788998 9999999999999999988 57788888886553211100 0112234


Q ss_pred             eEEE--------------EEEeeeCCCcEEEEcCe-eeecceEEEEecCCCCceeE--EEEcccCCCCCCCCcceeeeeC
Q psy12134         71 RAEI--------------ICNVYANPPAKRFDEGT-RFDEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLRPSAYMAD  133 (139)
Q Consensus        71 ~~~l--------------~C~~~~~p~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~~~~~~~  133 (139)
                      .+.+              .|.+...+.+...|... ......+.+..+...+.|.|  .|.|.+|.+..|.........+
T Consensus       214 ~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~~t~~  293 (305)
T 2nzi_A          214 SVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE  293 (305)
T ss_dssp             CEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCEECCC
T ss_pred             EEEEEEcCCccCCCCceeEEEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCEEcCC
Confidence            4444              44444444333333211 12356789999999999999  8999999999988776666555


Q ss_pred             CCC
Q psy12134        134 APP  136 (139)
Q Consensus       134 ~~~  136 (139)
                      .+|
T Consensus       294 ~~p  296 (305)
T 2nzi_A          294 DKT  296 (305)
T ss_dssp             ---
T ss_pred             ccc
Confidence            444

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.43  E-value=6.3e-14  Score=92.02  Aligned_cols=104  Identities=14%  Similarity=0.116  Sum_probs=71.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC--ceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeCCCc--EEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KRF   87 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~--~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~   87 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+.  .......|.|.    .+|.+...........|+.+.|.|.+.+.+++  .+.
T Consensus        91 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  170 (234)
T 2j6e_L           91 ASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVA  170 (234)
T ss_dssp             EEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEE
Confidence            37999999999999999999998762  22334566664    34544432222223458899999999986543  677


Q ss_pred             E--cCeeee------------------cceEEEEecCCCCceeE--EEEcccCC
Q psy12134         88 D--EGTRFD------------------EGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        88 ~--~~~~~~------------------~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |  ++..+.                  ...|.|..+..+|.|.|  .+.|..+.
T Consensus       171 W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  224 (234)
T 2j6e_L          171 WKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  224 (234)
T ss_dssp             EEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred             EEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence            8  443321                  12467778888999999  67777554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.43  E-value=6.9e-13  Score=88.24  Aligned_cols=101  Identities=16%  Similarity=0.190  Sum_probs=70.0

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec---CCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-EEEE--c
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KRFD--E   89 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~~--~   89 (139)
                      .|.|.+++.+|+|.|.|.+.|..+........|.|..   +|.+........+..|+.+.|.|.+.+. |++ .+.|  +
T Consensus       110 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  189 (252)
T 3bkj_L          110 TLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID  189 (252)
T ss_dssp             EEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             EEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEEC
Confidence            7999999999999999999987654333445677764   5666543332233468899999999985 443 5777  4


Q ss_pred             Ceeee-------------c------ceEEEEecCCCCceeE--EEEccc
Q psy12134         90 GTRFD-------------E------GTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        90 ~~~~~-------------~------~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      +....             +      ..|.|..+..+|.|.|  .+.|..
T Consensus       190 g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~  238 (252)
T 3bkj_L          190 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT  238 (252)
T ss_dssp             TEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTT
T ss_pred             CeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCC
Confidence            43211             1      1377888888899999  566653

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.43  E-value=2.7e-12  Score=85.04  Aligned_cols=101  Identities=12%  Similarity=0.078  Sum_probs=70.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC-------------eEEecCceEeeCCCCeEEEEEEeeeCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP-------------EVSVEKQWIHTAPDMRAEIICNVYANP   82 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p-------------~~~~~~~~~~~~~g~~~~l~C~~~~~p   82 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+........|.|..++             .....+....+.+|+++.|.|.+.+.+
T Consensus        76 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~  155 (247)
T 1svz_A           76 FTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYA  155 (247)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSC
T ss_pred             EEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcc
Confidence            3699999999999999999998755433445677777642             222222334578999999999999875


Q ss_pred             --CcEEEEcC----ee-------------------------ee------cceEEEEecCCCCceeE--EEEcc
Q psy12134         83 --PAKRFDEG----TR-------------------------FD------EGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        83 --~~~~~~~~----~~-------------------------~~------~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                        .+.++|-.    ..                         ..      ...|.|.++..+|.|.|  .+.|.
T Consensus       156 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          156 FTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             GGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             cCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence              45677721    10                         00      13789999999999999  55653

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.41  E-value=6.2e-13  Score=86.20  Aligned_cols=87  Identities=10%  Similarity=0.040  Sum_probs=61.6

Q ss_pred             eEEEECCEEeee---------c------CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEE--EEecCCeEEecCce
Q psy12134          2 LVIFFSKIELLY---------N------RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l--~v~~~p~~~~~~~~   63 (139)
                      +.|+|+++.+..         .      .+.|.|.+++.+|+|.|+|.+.|..+.. ....+.+  .+..+|.+...+..
T Consensus        39 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~  118 (207)
T 2vol_A           39 FSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPP  118 (207)
T ss_dssp             EEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCC
T ss_pred             EEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCC
Confidence            789999976531         1      1468999999999999999999987652 2333433  45678877654433


Q ss_pred             EeeCCCCeEEEEEEeeeCCCc--EEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      .....|+.+.|.|.+.+.+++  .+.|
T Consensus       119 ~~~~~g~~~~L~C~~~g~~P~~~~v~W  145 (207)
T 2vol_A          119 KEQMAKDKVSLTCMITDFFPEDITVEW  145 (207)
T ss_dssp             TGGGSSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             HHHhcCCceEEEEEEeeEECCCCEEEE
Confidence            223358999999999985433  6778

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.40  E-value=7.9e-12  Score=79.54  Aligned_cols=95  Identities=11%  Similarity=0.087  Sum_probs=68.3

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC---CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--c
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--E   89 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~   89 (139)
                      ...|.|.+++.+|+|.|.|.+.+..  ..+..+.|.|..+   |.+..        .+..+.|.|.+...|.+.+.|  +
T Consensus        68 ~~sL~I~~v~~~D~G~Y~C~v~~~~--~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~gp~p~i~W~~~  137 (180)
T 2dru_A           68 NGALRIYNVSKEDRGDYYMRMLHET--EDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEGTDVELKLYQG  137 (180)
T ss_dssp             TCCEEECSCCGGGCEEEEEEEESSS--EEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSCTTCEEEEEET
T ss_pred             CccEEEcCCCHHHCeEEEEEEEcCC--eEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCCCCCEEEEEEC
Confidence            3679999999999999999998765  3577888888754   32222        246699999994348888888  4


Q ss_pred             Ceee---ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         90 GTRF---DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        90 ~~~~---~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +..+   ....+.+..  .+|.|.|  .|.|.+|...
T Consensus       138 ~~~l~~~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~  172 (180)
T 2dru_A          138 KEHLRSLRQKTMSYQW--TNLRAPFKCKAVNRVSQES  172 (180)
T ss_dssp             TEEEEEESSSEEEEEC--SCCSSCEEEEEEETTEEEE
T ss_pred             CeECcCCCCCEEEEEE--hhcCccEEEEEecCcCccc
Confidence            4433   223455422  7899999  7888887654

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.40  E-value=3.8e-12  Score=84.83  Aligned_cols=99  Identities=14%  Similarity=0.084  Sum_probs=74.0

Q ss_pred             eEEEcccCCCCCEEEEEEEEcC-----------CCCceeeeEEEEEec---------------CCeEEecCceEeeCCCC
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNN-----------IGESTSKNFIVNVIY---------------PPEVSVEKQWIHTAPDM   70 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~-----------~~~~~s~~~~l~v~~---------------~p~~~~~~~~~~~~~g~   70 (139)
                      .|.|.+++.+|+|.|.|.+.|.           ..........|.|..               ++.+...+....+.+|+
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  165 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE  165 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence            5999999999999999999986           112134556777876               34566667777889999


Q ss_pred             eEEEEEEeeeCCC-cEEEEcC----ee--e----------------------ecceEEEEecCCCCceeE--EEEc
Q psy12134         71 RAEIICNVYANPP-AKRFDEG----TR--F----------------------DEGTVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        71 ~~~l~C~~~~~p~-~~~~~~~----~~--~----------------------~~~~l~i~~~~~~d~g~y--~~~n  115 (139)
                      ++.|.|.+.+.|. +.++|-.    ..  .                      ....|.|.++..+|.|.|  .+.|
T Consensus       166 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  241 (256)
T 3juy_B          166 RATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYG  241 (256)
T ss_dssp             CEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECC
T ss_pred             CEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEee
Confidence            9999999998776 7788821    11  0                      112489999999999999  4444

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.39  E-value=7.6e-12  Score=84.00  Aligned_cols=101  Identities=11%  Similarity=0.012  Sum_probs=71.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC------------------eE-EecCceEeeCCCCeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP------------------EV-SVEKQWIHTAPDMRAEIIC   76 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p------------------~~-~~~~~~~~~~~g~~~~l~C   76 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+........|.|..+|                  .+ ...+....+.+|+++.|.|
T Consensus        81 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C  160 (264)
T 2gjj_A           81 FTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISC  160 (264)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEE
Confidence            4799999999999999999998754323445678887653                  11 2222234678999999999


Q ss_pred             EeeeCCC--cEEEE--c--Cee---e----------------------------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         77 NVYANPP--AKRFD--E--GTR---F----------------------------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        77 ~~~~~p~--~~~~~--~--~~~---~----------------------------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      .+.+.++  +.++|  +  +..   +                            ....|.|.++..+|.|.|  .+.|.
T Consensus       161 ~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          161 KASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            9998774  67778  1  110   0                            013688999999999999  55553

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.39  E-value=5.9e-12  Score=84.35  Aligned_cols=108  Identities=18%  Similarity=0.161  Sum_probs=70.0

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCC-CCceeeeEEEEEec------CCeEEe-cCceEeeCCCCeEEEEEEeeeCCCc--
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNI-GESTSKNFIVNVIY------PPEVSV-EKQWIHTAPDMRAEIICNVYANPPA--   84 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~-~~~~s~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~--   84 (139)
                      ...|.|.+++.+|+|.|.|.+.+.. .........|.|..      +|.+.. .+....+..|+.+.|.|.+.+.+++  
T Consensus        99 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~  178 (268)
T 3pl6_D           99 VSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  178 (268)
T ss_dssp             SEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCe
Confidence            3579999999999999999999742 12234555677765      565543 2333334568999999999986654  


Q ss_pred             EEEE--cCeeee-----------------cc------eEEEEecCCCC-ceeE--EEEcccCCCCC
Q psy12134         85 KRFD--EGTRFD-----------------EG------TVTAKVLQPFS-ERTL--SVQDKIGPGPD  122 (139)
Q Consensus        85 ~~~~--~~~~~~-----------------~~------~l~i~~~~~~d-~g~y--~~~n~~g~~~~  122 (139)
                      .+.|  ++..+.                 ++      .|.+.....+| .|.|  .+.|.......
T Consensus       179 ~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~~  244 (268)
T 3pl6_D          179 ELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEND  244 (268)
T ss_dssp             EEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred             EEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCCc
Confidence            6777  443321                 12      23455555555 8999  66776554443

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.38  E-value=5.4e-12  Score=82.20  Aligned_cols=102  Identities=17%  Similarity=0.130  Sum_probs=72.3

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCc--eeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-EEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KRFD   88 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~--~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~~   88 (139)
                      .|.|.+++.+|+|.|.|.+.|..+..  ......|.|.    .+|.+...+....+.+|+.+.|.|.+.+. |.+ .+.|
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  161 (220)
T 1pz5_B           82 YLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKW  161 (220)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEE
Confidence            79999999999999999999875331  2245677776    35665543322345679999999999987 877 8889


Q ss_pred             --cCee-----e----------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         89 --EGTR-----F----------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        89 --~~~~-----~----------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                        ++..     .          ....|.|.....++ |.|  .+.|..|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  210 (220)
T 1pz5_B          162 NYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASK  210 (220)
T ss_dssp             GGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGT
T ss_pred             ecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCcc
Confidence              2221     0          12346676776656 999  88898885

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.38  E-value=2.3e-13  Score=91.81  Aligned_cols=117  Identities=15%  Similarity=0.003  Sum_probs=82.1

Q ss_pred             eEEEECCEEee---e--cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE-EecCceEeeCCCCeEEEE
Q psy12134          2 LVIFFSKIELL---Y--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHTAPDMRAEII   75 (139)
Q Consensus         2 ~~W~~~~~~~~---~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~   75 (139)
                      +.|++++....   .  ..+.|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.. ...+....+.+|+.+.|.
T Consensus        32 v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~  110 (292)
T 4dkd_C           32 VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG-GSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLP  110 (292)
T ss_dssp             CCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC-----CCEEECCEECCSSCCEEESCSEEEEETTSCEECC
T ss_pred             eEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCCCC-cceEEEEEEcCccccccccCCeEEEcCCCcEEEe
Confidence            56886554321   1  1258999999999999999999998776 378888889887753 445556777899999999


Q ss_pred             EEeeeCCC-cEEEE--c-Ceee---------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         76 CNVYANPP-AKRFD--E-GTRF---------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        76 C~~~~~p~-~~~~~--~-~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |.+.+.++ +.+.|  + +...         ....|.|..+..+|.|.|  .+.|..|.
T Consensus       111 C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  169 (292)
T 4dkd_C          111 CLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRK  169 (292)
T ss_dssp             EEESSGGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSC
T ss_pred             eeCCCCCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCc
Confidence            99997332 56777  2 2211         234589999999999999  55655443

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.38  E-value=6.6e-12  Score=81.89  Aligned_cols=104  Identities=15%  Similarity=0.080  Sum_probs=72.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC----ceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-E
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE----STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-K   85 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~----~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~   85 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+.    .......|.|..    +|.+........+..|+.+.|.|.+.+. |.+ .
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~  160 (222)
T 1q9r_B           81 LYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT  160 (222)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCE
T ss_pred             EEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCE
Confidence            37999999999999999999986531    123445677763    4555543322235679999999999986 777 8


Q ss_pred             EEE--cCeee---------ec------ceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         86 RFD--EGTRF---------DE------GTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        86 ~~~--~~~~~---------~~------~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      +.|  ++..+         ..      ..|.|..+..+| |.|  .+.|..|..
T Consensus       161 v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~  213 (222)
T 1q9r_B          161 VTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  213 (222)
T ss_dssp             EEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             EEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCC
Confidence            889  33211         11      246777778788 999  788887764

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.38  E-value=2.2e-12  Score=89.41  Aligned_cols=102  Identities=18%  Similarity=0.109  Sum_probs=71.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeC-CC-cEEEE-
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYAN-PP-AKRFD-   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~~-   88 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+. ......|.|.    .+|.+........+..|+.+.|.|.+.+. |. +.+.| 
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  157 (344)
T 1za6_B           79 AYVELSSLRSEDTAVYFCTRSLNMAY-WGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN  157 (344)
T ss_dssp             EEEEECSCCGGGCEEEEEEETTTTCE-ECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEET
T ss_pred             EEEEECCCCcccCEEEEEEEecCcce-ecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEe
Confidence            47999999999999999999985433 3456678887    34555543323345789999999999987 54 67889 


Q ss_pred             -cCeee----------ec------ceEEEEecCCCCceeE--EEEcccCC
Q psy12134         89 -EGTRF----------DE------GTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        89 -~~~~~----------~~------~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                       ++...          .+      ..|.|..+..+| |.|  .+.|..|.
T Consensus       158 k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~  206 (344)
T 1za6_B          158 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  206 (344)
T ss_dssp             TTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGT
T ss_pred             cCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence             33210          11      256777777667 999  67787765

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.37  E-value=8.8e-13  Score=86.15  Aligned_cols=87  Identities=14%  Similarity=0.174  Sum_probs=61.0

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEE--EEecCCeEEecCce
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l--~v~~~p~~~~~~~~   63 (139)
                      ++|+|+++.+...               .+.|.|.+++.+|+|.|+|.+.|..+.. ....+.+  .+..+|.+...+..
T Consensus        47 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~  126 (218)
T 2rgs_A           47 ISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPP  126 (218)
T ss_dssp             EEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCC
T ss_pred             EEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCC
Confidence            7899999775321               2468999999999999999999986542 2233222  45567877644332


Q ss_pred             EeeCCCCeEEEEEEeee-CCCc-EEEE
Q psy12134         64 IHTAPDMRAEIICNVYA-NPPA-KRFD   88 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~-~p~~-~~~~   88 (139)
                      .....|+.+.|.|.+.+ .|++ .+.|
T Consensus       127 ~~~~~g~~~~L~C~~~g~~P~~~~v~W  153 (218)
T 2rgs_A          127 AEQLSRKDVSLTCLVVGFNPGDISVEW  153 (218)
T ss_dssp             GGGTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             hHHhcCCceEEEEEEEeeeCCCcEEEE
Confidence            22345999999999998 5655 7788

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.35  E-value=1.1e-12  Score=90.11  Aligned_cols=102  Identities=9%  Similarity=-0.008  Sum_probs=67.7

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE----EecCCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-EEEE--
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN----VIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KRFD--   88 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~----v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~~--   88 (139)
                      .|.|.++..+|+|.|+|.+.|..... .....+.    +..+|.+...+.......|+.+.|.|.+.+. |++ .+.|  
T Consensus       179 ~L~I~~~~~~D~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k  257 (323)
T 2wqr_A          179 TLPVGTRDWIEGETYQCRVTHPHLPR-ALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLH  257 (323)
T ss_dssp             EEECCHHHHHTTCCEEEEEECTTSSS-CEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEECHHHccCCCCEEEEEECCCCCC-CeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEE
Confidence            69999999999999999999986331 2222222    2256766543222222349999999999984 443 5778  


Q ss_pred             cCeeee-------------------cceEEEEecCCCCceeE--EEEcccCC
Q psy12134         89 EGTRFD-------------------EGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        89 ~~~~~~-------------------~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      ++..+.                   ...|.|..+..+|.|.|  .|.|..+.
T Consensus       258 ~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          258 NEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             TTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             CCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            444321                   12477777888899999  67777554

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.34  E-value=6.6e-12  Score=83.01  Aligned_cols=106  Identities=16%  Similarity=0.149  Sum_probs=71.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC---CceeeeEEEEEec------CCeEEe-cCceEeeCCCCeEEEEEEeeeCCCc-
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG---ESTSKNFIVNVIY------PPEVSV-EKQWIHTAPDMRAEIICNVYANPPA-   84 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~---~~~s~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~-   84 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+   ........|.|..      +|.+.. .+....+..|+.+.|.|.+.+.|++ 
T Consensus        77 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~  156 (246)
T 4dzb_B           77 STLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  156 (246)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCc
Confidence            3799999999999999999987542   1133555677763      555543 3333344569999999999987665 


Q ss_pred             -EEEE--cCeeee-----------------cc------eEEEEecCCCC-ceeE--EEEcccCCCC
Q psy12134         85 -KRFD--EGTRFD-----------------EG------TVTAKVLQPFS-ERTL--SVQDKIGPGP  121 (139)
Q Consensus        85 -~~~~--~~~~~~-----------------~~------~l~i~~~~~~d-~g~y--~~~n~~g~~~  121 (139)
                       .+.|  ++..+.                 ++      .|.+.....+| .|.|  .+.|......
T Consensus       157 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          157 VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             eEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence             6677  444321                 22      25666666667 8999  6777755544

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.34  E-value=4.4e-11  Score=88.02  Aligned_cols=105  Identities=19%  Similarity=0.218  Sum_probs=72.0

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC---eEEecCceEeeCCCC-eEEEEEEeee-CCCcEEEE-
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP---EVSVEKQWIHTAPDM-RAEIICNVYA-NPPAKRFD-   88 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p---~~~~~~~~~~~~~g~-~~~l~C~~~~-~p~~~~~~-   88 (139)
                      ++.|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|   .+.....  .+..+. .+.|.|.+.+ .|.+.+.| 
T Consensus       431 ~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~--~~~~~~~~~~l~C~~~~~~P~~~i~W~  508 (581)
T 3o3u_N          431 NGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSAS--ELTAGVPNKVGTCVSEGSYPAGTLSWH  508 (581)
T ss_dssp             TSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCS--EECTTSCEEEEEEEEEEEBSCCEEEEE
T ss_pred             CceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCc--ccccCCceeEEEEECCCCCCCCeEEEE
Confidence            36799999999999999999999888755778899998743   3333332  233444 4567999988 58888888 


Q ss_pred             -cCeeee-----------------------cceEEEEecC-CCCceeE--EEEcccCCCC
Q psy12134         89 -EGTRFD-----------------------EGTVTAKVLQ-PFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        89 -~~~~~~-----------------------~~~l~i~~~~-~~d~g~y--~~~n~~g~~~  121 (139)
                       ++..+.                       ...|.+..+. ..+.+.|  .+.|.++...
T Consensus       509 ~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~~  568 (581)
T 3o3u_N          509 LDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHR  568 (581)
T ss_dssp             ETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSSC
T ss_pred             ECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCCC
Confidence             443310                       1236666666 3446778  6677765443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.33  E-value=4e-11  Score=79.03  Aligned_cols=107  Identities=17%  Similarity=0.193  Sum_probs=69.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC--CCCceeeeEEEEEe------cCCeEEe-cCceEeeCCCCeEEEEEEeee-CCCc-
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN--IGESTSKNFIVNVI------YPPEVSV-EKQWIHTAPDMRAEIICNVYA-NPPA-   84 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~--~~~~~s~~~~l~v~------~~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-   84 (139)
                      ..|.|.+++.+|+|.|.|.+.+.  ..........|.|.      .+|.+.. .+....+..|+.+.|.|.+.+ .|++ 
T Consensus        75 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~  154 (240)
T 3q5y_A           75 SEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHV  154 (240)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCe
Confidence            46999999999999999999832  22223455567776      4565543 333334456899999999998 4545 


Q ss_pred             EEEE--cCeeee-------------cc------eEEEEecCCCC-ceeE--EEEcccCCCCC
Q psy12134         85 KRFD--EGTRFD-------------EG------TVTAKVLQPFS-ERTL--SVQDKIGPGPD  122 (139)
Q Consensus        85 ~~~~--~~~~~~-------------~~------~l~i~~~~~~d-~g~y--~~~n~~g~~~~  122 (139)
                      .+.|  ++..+.             ++      .|.+.....+| .|.|  .+.|.......
T Consensus       155 ~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~~  216 (240)
T 3q5y_A          155 ELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEED  216 (240)
T ss_dssp             EEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred             EEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCcc
Confidence            5677  444321             12      26677777777 6789  67776554443

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.31  E-value=2.9e-11  Score=78.99  Aligned_cols=105  Identities=18%  Similarity=0.174  Sum_probs=73.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC--ceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeeeC-CC--cEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYAN-PP--AKR   86 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~--~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~~   86 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+.  .......|.|..    +|.+...+ ...+..|+.+.|.|.+.+. |.  +.+
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v  157 (220)
T 2fbj_H           79 LYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNV  157 (220)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEE
T ss_pred             EEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEE
Confidence            37999999999999999999987542  123446777764    45555433 2345689999999999987 65  577


Q ss_pred             EE--cCeee----------ecc------eEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         87 FD--EGTRF----------DEG------TVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        87 ~~--~~~~~----------~~~------~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .|  ++...          .++      .|.|......|.|.|  .+.|..|..+
T Consensus       158 ~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          158 TWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            88  22211          111      366666777889999  7788877654

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.31  E-value=2.6e-11  Score=86.62  Aligned_cols=103  Identities=15%  Similarity=0.079  Sum_probs=72.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC--ceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-EEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KRF   87 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~--~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~   87 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+.  .......|.|..    +|.+........+..|+.+.|.|.+.+. |.+ .+.
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  158 (444)
T 1igt_B           79 LYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT  158 (444)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEE
Confidence            47999999999999999999987544  123456777763    4555432222234689999999999885 665 788


Q ss_pred             Ec--Ceee---------------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         88 DE--GTRF---------------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        88 ~~--~~~~---------------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |.  +...               ....|.|..+..+| |.|  .+.|..|.
T Consensus       159 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~  208 (444)
T 1igt_B          159 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  208 (444)
T ss_dssp             EGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTT
T ss_pred             EecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCC
Confidence            82  2210               11346777777788 999  77887775

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.29  E-value=9.6e-12  Score=88.64  Aligned_cols=103  Identities=17%  Similarity=0.135  Sum_probs=72.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-EEEE-
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KRFD-   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~~-   88 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+. ......|.|..    +|.+........+..|+.+.|.|.+.+. |.+ .+.| 
T Consensus        78 ~~L~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~  156 (434)
T 1igy_B           78 ANIHLSSLTSDDSAVYYCVREGEVPY-WGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  156 (434)
T ss_dssp             BCEEECSBCGGGCSEECCCCSSSSCC-CCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEET
T ss_pred             EEEEECCCChHHCEEEEEEEEccccc-cCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEe
Confidence            37999999999999999999985433 34556777763    4555432222345689999999999986 665 7889 


Q ss_pred             -cCeee---------------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         89 -EGTRF---------------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        89 -~~~~~---------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                       ++...               ....|.|..+..+| |.|  .+.|..|..
T Consensus       157 k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~  205 (434)
T 1igy_B          157 SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST  205 (434)
T ss_dssp             TTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC
T ss_pred             eCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc
Confidence             22210               11357787888888 999  778887764

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.28  E-value=9.3e-12  Score=72.87  Aligned_cols=53  Identities=30%  Similarity=0.333  Sum_probs=44.0

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++.++...          ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|
T Consensus        45 v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~pP  107 (107)
T 3knb_B           45 VVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGE-AYAAAAVTVLEPP  107 (107)
T ss_dssp             EEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC--
T ss_pred             EEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCE-EEEEEEEEEEcCC
Confidence            7899999887542          147999999999999999999999988 5778899998765

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.28  E-value=3.4e-11  Score=79.06  Aligned_cols=103  Identities=15%  Similarity=0.064  Sum_probs=65.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-EEEE-
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KRFD-   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~~-   88 (139)
                      ..|.|.+++.+|+|.|.|.+.+...........|.|..    +|.+........+..|+.+.|.|.+.+. |.+ .+.| 
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  158 (227)
T 1mju_H           79 AYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWN  158 (227)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEG
T ss_pred             EEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEe
Confidence            47999999999999999999986322123445777764    4555433222245679999999999986 666 7889 


Q ss_pred             -cCeee---------------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         89 -EGTRF---------------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        89 -~~~~~---------------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                       ++..+               ....|.|.....+| |.|  .+.|..+.
T Consensus       159 ~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  206 (227)
T 1mju_H          159 SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  206 (227)
T ss_dssp             GGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGT
T ss_pred             cCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCC
Confidence             33211               11246666666667 999  67776443

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.28  E-value=1.1e-12  Score=89.48  Aligned_cols=137  Identities=12%  Similarity=0.142  Sum_probs=35.1

Q ss_pred             eEEEECCEEeeecC-------CeEEEcccCCCCCEEEEEEEEcCCCC-------ceeeeEEEEEecCCeEEec-CceEee
Q psy12134          2 LVIFFSKIELLYNR-------ESLDLDRVTLKLAGLYQCIASNNIGE-------STSKNFIVNVIYPPEVSVE-KQWIHT   66 (139)
Q Consensus         2 ~~W~~~~~~~~~~~-------~~L~i~~v~~~d~G~Y~C~~~n~~~~-------~~s~~~~l~v~~~p~~~~~-~~~~~~   66 (139)
                      |+|||++.++....       ..|.+.....+|.+.|+|+|.|..+.       ..++...|.|.++|..... .....+
T Consensus       121 itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l  200 (291)
T 1mq8_A          121 VVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVL  200 (291)
T ss_dssp             EEEESSSSEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----------------
T ss_pred             EEEEECCEEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCc
Confidence            79999998875422       34555555555556999999987552       2467789999998643211 112256


Q ss_pred             CCCCeEEEEEEeeeCCCc---EEEE--cCeee------ecceEEEEec---CCCCceeE--EEEcccCCCCCCCCcceee
Q psy12134         67 APDMRAEIICNVYANPPA---KRFD--EGTRF------DEGTVTAKVL---QPFSERTL--SVQDKIGPGPDSNLRPSAY  130 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~---~~~~--~~~~~------~~~~l~i~~~---~~~d~g~y--~~~n~~g~~~~~~~~~~~~  130 (139)
                      .+|+.+.|.|.+.++||+   .++|  ++...      .++.+.+...   ..++.|+|  .|.+..|.... ..+-.+.
T Consensus       201 ~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~l~  279 (291)
T 1mq8_A          201 EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQTVT  279 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCeEEEEEEcCCCCCCcccEEEEEECCEecCceeeecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcce-EEEEEEE
Confidence            689999999999998765   3466  33332      2234444443   34455555  77777665443 3355566


Q ss_pred             eeCCCCCCC
Q psy12134        131 MADAPPTKL  139 (139)
Q Consensus       131 ~~~~~~~~~  139 (139)
                      +-++|.+.|
T Consensus       280 v~~~~~~~~  288 (291)
T 1mq8_A          280 IYSFPAPNV  288 (291)
T ss_dssp             ---------
T ss_pred             EEcCCCccE
Confidence            667777654

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.28  E-value=4.3e-11  Score=78.52  Aligned_cols=105  Identities=13%  Similarity=0.049  Sum_probs=69.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC------C--ceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeeeC-C
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG------E--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYAN-P   82 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~------~--~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p   82 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+      .  .......|.|..    +|.+........+..|+.+.|.|.+.+. |
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P  159 (228)
T 3bae_H           80 VFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFP  159 (228)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBS
T ss_pred             EEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeC
Confidence            5799999999999999999998654      1  112346777773    5666543322345689999999999986 7


Q ss_pred             Cc-EEEE--cCeee---------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         83 PA-KRFD--EGTRF---------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        83 ~~-~~~~--~~~~~---------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .+ .+.|  ++...               ....|.|.....++ |.|  .+.|..|...
T Consensus       160 ~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~  217 (228)
T 3bae_H          160 EPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTK  217 (228)
T ss_dssp             SCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             CCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCC
Confidence            66 7888  22210               11246666666655 999  7888877543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.27  E-value=1.4e-11  Score=87.89  Aligned_cols=115  Identities=13%  Similarity=0.144  Sum_probs=74.2

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEE--EEecCCeEEecCce
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l--~v~~~p~~~~~~~~   63 (139)
                      ++|+|++..+...               .+.|.|.++..+|+|.|+|.|.|..+.. ....+.+  .+..+|.+...+..
T Consensus       276 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~  355 (444)
T 1igt_B          276 ISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPP  355 (444)
T ss_dssp             EEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCC
T ss_pred             EEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCC
Confidence            7899999875321               2479999999999999999999988763 2333333  45677877644332


Q ss_pred             EeeCCCCeEEEEEEeeeC-CCc-EEEE--cCeee-----------ecc------eEEEEecCCCCceeE--EEEcc
Q psy12134         64 IHTAPDMRAEIICNVYAN-PPA-KRFD--EGTRF-----------DEG------TVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~-p~~-~~~~--~~~~~-----------~~~------~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      .....+..+.|.|.+.+. |++ .+.|  ++..+           .++      .|.+.....+|.|.|  .|.|.
T Consensus       356 ~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~  431 (444)
T 1igt_B          356 EEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHE  431 (444)
T ss_dssp             GGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECT
T ss_pred             hHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECC
Confidence            222234459999999984 555 6778  44321           112      233444445568999  56665

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.27  E-value=2.2e-11  Score=82.82  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=72.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC-CCc---eeeeEEEEEec----------------CCeEEecCceEeeCCCCeEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI-GES---TSKNFIVNVIY----------------PPEVSVEKQWIHTAPDMRAEII   75 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~-~~~---~s~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~   75 (139)
                      ..|.|.+++.+|+|.|.|.+.|.. +..   ......|.|..                ++.+...+....+.+|+++.|.
T Consensus       101 ~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~  180 (291)
T 2gki_A          101 AYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMS  180 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEE
T ss_pred             EEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEE
Confidence            469999999999999999999864 211   12345677766                2334455556678899999999


Q ss_pred             EEeeeCCCc------EEEEc----Cee--e----------------------ecceEEEEecCCCCceeE--EEEc
Q psy12134         76 CNVYANPPA------KRFDE----GTR--F----------------------DEGTVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        76 C~~~~~p~~------~~~~~----~~~--~----------------------~~~~l~i~~~~~~d~g~y--~~~n  115 (139)
                      |.+.+.|.+      .++|-    +..  .                      ....|.|.++..+|.|.|  .+.|
T Consensus       181 C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~  256 (291)
T 2gki_A          181 CKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSY  256 (291)
T ss_dssp             EEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            999988765      67782    111  0                      012689999999999999  4555

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.26  E-value=2.8e-11  Score=87.25  Aligned_cols=104  Identities=10%  Similarity=-0.033  Sum_probs=72.1

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe------------------cCCeEE-ecCceEeeCCCCeEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI------------------YPPEVS-VEKQWIHTAPDMRAEIICN   77 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~------------------~~p~~~-~~~~~~~~~~g~~~~l~C~   77 (139)
                      .|.|..+...|+|.|+|.+.|..+...+..+.|.|.                  .+|.+. ..+....+..|+.+.|.|.
T Consensus       191 ~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~  270 (475)
T 1iga_A          191 QLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCT  270 (475)
T ss_pred             EEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEE
Confidence            578888888999999999999876433444444341                  244443 2233223478999999999


Q ss_pred             eeeCCC---cEEEEcCeee-----------------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         78 VYANPP---AKRFDEGTRF-----------------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        78 ~~~~p~---~~~~~~~~~~-----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      +.+.++   +.+.|++...                 ....|.|..+..+|.|.|  .+.|..|..
T Consensus       271 ~~g~~p~~~~~i~W~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~  335 (475)
T 1iga_A          271 LTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT  335 (475)
T ss_pred             EEcccCCCceEEEECCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCC
Confidence            998755   5778943221                 122588899999999999  777877764

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.26  E-value=4e-11  Score=80.47  Aligned_cols=96  Identities=11%  Similarity=0.006  Sum_probs=65.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe-----------------------EEecCceEeeCCCCeE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-----------------------VSVEKQWIHTAPDMRA   72 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~-----------------------~~~~~~~~~~~~g~~~   72 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+........|.|...+.                       ....+....+.+|+++
T Consensus        90 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v  169 (268)
T 1x9q_A           90 FTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAM  169 (268)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCE
T ss_pred             EEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcE
Confidence            37999999999999999999987543233455677765321                       1222334577899999


Q ss_pred             EEEEEeeeCCC--cEEEEc----Cee---------------------------ee------cceEEEEecCCCCceeE
Q psy12134         73 EIICNVYANPP--AKRFDE----GTR---------------------------FD------EGTVTAKVLQPFSERTL  111 (139)
Q Consensus        73 ~l~C~~~~~p~--~~~~~~----~~~---------------------------~~------~~~l~i~~~~~~d~g~y  111 (139)
                      .|.|.+.+.++  +.++|-    +..                           ..      ...|.|.++..+|.|.|
T Consensus       170 ~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y  247 (268)
T 1x9q_A          170 KLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIY  247 (268)
T ss_dssp             EEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             EEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEE
Confidence            99999998764  667781    110                           00      13689999999999999

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.25  E-value=1.1e-10  Score=78.20  Aligned_cols=107  Identities=20%  Similarity=0.187  Sum_probs=69.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC---CceeeeEEEEEec------CCeEEe-cCceEeeCCCCeEEEEEEeee-CCCc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG---ESTSKNFIVNVIY------PPEVSV-EKQWIHTAPDMRAEIICNVYA-NPPA   84 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~---~~~s~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~   84 (139)
                      ..|.|.+++.+|+|.|.|.+.+...   ........|.|..      +|.+.. .+....+..|+.+.|.|.+.+ .|++
T Consensus       101 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  180 (270)
T 3qib_D          101 CSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  180 (270)
T ss_dssp             EEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCC
Confidence            5799999999999999999997431   1133455677765      565543 232223445899999999998 5555


Q ss_pred             -EEEE--cCeeee-----------------cc------eEEEEecCCCC-ceeE--EEEcccCCCCC
Q psy12134         85 -KRFD--EGTRFD-----------------EG------TVTAKVLQPFS-ERTL--SVQDKIGPGPD  122 (139)
Q Consensus        85 -~~~~--~~~~~~-----------------~~------~l~i~~~~~~d-~g~y--~~~n~~g~~~~  122 (139)
                       .+.|  ++..+.                 ++      .|.+.....+| .|.|  .+.|.......
T Consensus       181 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~~~  247 (270)
T 3qib_D          181 VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEND  247 (270)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCTTS
T ss_pred             eEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCCcc
Confidence             5677  444321                 12      23455555555 8999  66776554443

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.25  E-value=1.2e-10  Score=76.83  Aligned_cols=105  Identities=17%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC---CCceeeeEEEEEe------cCCeEEe-cCceEeeCCCCeEEEEEEeeeCCC-c
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI---GESTSKNFIVNVI------YPPEVSV-EKQWIHTAPDMRAEIICNVYANPP-A   84 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~---~~~~s~~~~l~v~------~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~-~   84 (139)
                      ..|.|.+++.+|+|.|.|.+.+..   .........|.|.      .+|.+.. .+....+..|+.+.|.|.+.+.++ +
T Consensus        76 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~  155 (245)
T 4ei6_B           76 FTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  155 (245)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCC
Confidence            379999999999999999998532   1223455667776      3565543 333333456899999999988544 4


Q ss_pred             -EEEE--cCeeee-----------------cc------eEEEEecCCCC-ceeE--EEEcccCCC
Q psy12134         85 -KRFD--EGTRFD-----------------EG------TVTAKVLQPFS-ERTL--SVQDKIGPG  120 (139)
Q Consensus        85 -~~~~--~~~~~~-----------------~~------~l~i~~~~~~d-~g~y--~~~n~~g~~  120 (139)
                       .+.|  ++..+.                 ++      .|.+.....+| .|.|  .+.|.....
T Consensus       156 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~  220 (245)
T 4ei6_B          156 VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  220 (245)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             eEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCC
Confidence             5677  444321                 22      25666666667 8999  666654433

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.25  E-value=6.9e-12  Score=84.56  Aligned_cols=116  Identities=18%  Similarity=0.137  Sum_probs=69.4

Q ss_pred             eEEEECCEEeee------c---CCeEEEcccCCCCCEEEEEEEEcCCCCce--eeeEEEEEecCCeEEe--cCc--eEee
Q psy12134          2 LVIFFSKIELLY------N---RESLDLDRVTLKLAGLYQCIASNNIGEST--SKNFIVNVIYPPEVSV--EKQ--WIHT   66 (139)
Q Consensus         2 ~~W~~~~~~~~~------~---~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~--s~~~~l~v~~~p~~~~--~~~--~~~~   66 (139)
                      +.|++++..+..      .   .+.|.|.+++.+|+|.|+|.+.|..|...  +..+.+.|..+.....  ...  ...+
T Consensus        28 v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v  107 (289)
T 3mjg_X           28 VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFL  107 (289)
T ss_dssp             CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEE
T ss_pred             EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEe
Confidence            689999877521      1   25799999999999999999999876532  3445555543322211  111  1567


Q ss_pred             CCCCeEEEEEEeeeCCCcEEE--EcC--eee----ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         67 APDMRAEIICNVYANPPAKRF--DEG--TRF----DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~~~--~~~--~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .+|+.+.|.|.+. .|.+.+.  |.+  ...    ......   +...|.|.|  .+.|..+...
T Consensus       108 ~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~~~~~---~~~~d~G~Y~C~a~n~~~~~~  168 (289)
T 3mjg_X          108 TEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQRGF---SGIFEDRSYICKTTIGDREVD  168 (289)
T ss_dssp             SSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEETTTEE---EECCCSSEEEEEEEETTEEEE
T ss_pred             ecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecCCcCe---eeeccCcEEEEEEEeCCceee
Confidence            8899999999998 5555554  433  111    111111   136799999  6666554443

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.23  E-value=2.4e-10  Score=74.75  Aligned_cols=105  Identities=12%  Similarity=0.102  Sum_probs=69.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC---C--ceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG---E--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-   84 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~---~--~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-   84 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+   .  .......|.|..    +|.+........+..|+.+.|.|.+.+. |.+ 
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~  158 (223)
T 1dee_B           79 LYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSI  158 (223)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCC
T ss_pred             EEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCe
Confidence            3799999999999999999998653   1  122445788873    4555432111234679999999999987 666 


Q ss_pred             EEEEc---Ceeee----------------cceEEEEecCC--CCceeE--EEEcccCCC
Q psy12134         85 KRFDE---GTRFD----------------EGTVTAKVLQP--FSERTL--SVQDKIGPG  120 (139)
Q Consensus        85 ~~~~~---~~~~~----------------~~~l~i~~~~~--~d~g~y--~~~n~~g~~  120 (139)
                      .+.|.   +..+.                ...|.|.....  +|.|.|  .+.|..|..
T Consensus       159 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~  217 (223)
T 1dee_B          159 TFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK  217 (223)
T ss_dssp             EEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred             EEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence            77883   23211                12355555554  678999  677776543

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.22  E-value=2.3e-10  Score=74.87  Aligned_cols=102  Identities=16%  Similarity=0.102  Sum_probs=69.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC-----C--ceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeeeC-CC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG-----E--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYAN-PP   83 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~-----~--~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~   83 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+     .  .......|.|..    +|.+........+..|+.+.|.|.+.+. |.
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~  158 (225)
T 1op3_H           79 VYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  158 (225)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSS
T ss_pred             EEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECC
Confidence            4799999999999999999998764     1  122456777875    3555432211234679999999999986 65


Q ss_pred             c-EEEE--cCeee----------e------cceEEEEecCCCCceeE--EEEcccC
Q psy12134         84 A-KRFD--EGTRF----------D------EGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        84 ~-~~~~--~~~~~----------~------~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      + .+.|  ++...          .      ...|.|.....+| |.|  .+.|..+
T Consensus       159 p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  213 (225)
T 1op3_H          159 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  213 (225)
T ss_dssp             CCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGG
T ss_pred             CeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCC
Confidence            5 7788  22210          1      1246777777778 999  7777644

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.22  E-value=3.3e-11  Score=81.50  Aligned_cols=100  Identities=19%  Similarity=0.214  Sum_probs=70.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC--------CCCceeeeEEEEEec---------------CCeEEecCceEeeCCCCeE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN--------IGESTSKNFIVNVIY---------------PPEVSVEKQWIHTAPDMRA   72 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~--------~~~~~s~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~   72 (139)
                      ..|.|.+++.+|+|.|.|.+.|.        ..........|.|..               ++.+...+. ..+.+|+++
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v  157 (280)
T 3fku_X           79 AYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTA  157 (280)
T ss_dssp             EEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCE
T ss_pred             EEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCE
Confidence            36999999999999999999986        111133455677765               444444444 678899999


Q ss_pred             EEEEEeee-CC-CcEEEEc----Ceee------------------------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         73 EIICNVYA-NP-PAKRFDE----GTRF------------------------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        73 ~l~C~~~~-~p-~~~~~~~----~~~~------------------------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      .|.|.+.+ .+ .+.++|-    +...                        ....|.|.++..+|.|.|  .+.|.
T Consensus       158 ~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  233 (280)
T 3fku_X          158 TLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDS  233 (280)
T ss_dssp             EEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEET
T ss_pred             EEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            99999988 43 3566771    1110                        112499999999999999  45554

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.21  E-value=2e-11  Score=81.01  Aligned_cols=87  Identities=13%  Similarity=0.085  Sum_probs=59.6

Q ss_pred             eEEEECCEEeee---------c------CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEE--EEecCCeEEecCce
Q psy12134          2 LVIFFSKIELLY---------N------RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l--~v~~~p~~~~~~~~   63 (139)
                      |+|+|+++.+..         .      .+.|.|.++..+|+|.|+|.+.|..+.. ....+.+  .+..+|.+.+.+..
T Consensus        53 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~  132 (239)
T 1i1c_A           53 FSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPP  132 (239)
T ss_dssp             EEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCC
T ss_pred             EEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCC
Confidence            789998876531         1      1468999999999999999999987652 2223322  45567877654433


Q ss_pred             EeeCCCCeEEEEEEeeeCCCc--EEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      .....|..+.|.|.+.+.+++  .+.|
T Consensus       133 ~~~~~g~~~~L~C~~~g~~P~~~~v~W  159 (239)
T 1i1c_A          133 KEEMTQSQVSITCMVKGFYPPDIYTEW  159 (239)
T ss_dssp             GGGGGSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             hHHhcCCcEEEEEEEeeeECCCeEEEE
Confidence            222347899999999985433  5677

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.20  E-value=5.8e-11  Score=68.88  Aligned_cols=54  Identities=28%  Similarity=0.313  Sum_probs=45.1

Q ss_pred             eEEEECCEEeeecC---------------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLYNR---------------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~~~---------------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|+|+|.++....               +.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|.
T Consensus        33 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V~~~P~  101 (103)
T 1wwb_X           33 LQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEECCSCCCC
T ss_pred             EEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCc-EeEEEEEEECCCCC
Confidence            78999998875322               23999999999999999999999998 58888888887663

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.20  E-value=4.8e-10  Score=78.39  Aligned_cols=123  Identities=17%  Similarity=0.179  Sum_probs=82.6

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCC
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD   69 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g   69 (139)
                      +.|++++..+...            ...|.|.+++..|+|.|+|.|.|..|. .+..+.|.+...|........ ....+
T Consensus       132 i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~P~~~~~-~~~~~  209 (389)
T 2jll_A          132 IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT-RFQEYILALADVPSSPYGVKI-IELSQ  209 (389)
T ss_dssp             EEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEE-EEEEEEEEECCCCCCCEEEEE-EEECS
T ss_pred             EEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCc-EEEEEEEEecCCCCCCcceEE-eeccC
Confidence            7899999876432            246999999999999999999999988 466777777654421111111 11235


Q ss_pred             CeEEEEEEeee----CCCcEE--EE--cCe----ee----ecceEEEEecCCCCceeE--EEEcccCCCCCCCCc
Q psy12134         70 MRAEIICNVYA----NPPAKR--FD--EGT----RF----DEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLR  126 (139)
Q Consensus        70 ~~~~l~C~~~~----~p~~~~--~~--~~~----~~----~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~  126 (139)
                      ..+.+.|....    .|...+  .|  .+.    ..    ....+.|..+...+.+.|  .|.|..|.+..+...
T Consensus       210 ~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~  284 (389)
T 2jll_A          210 TTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE  284 (389)
T ss_dssp             SCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCE
T ss_pred             CEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcce
Confidence            67788886422    122222  34  111    11    225789999999999999  899999988877553

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.19  E-value=4.8e-12  Score=86.99  Aligned_cols=115  Identities=10%  Similarity=-0.049  Sum_probs=74.4

Q ss_pred             eEEEECCEEeeec---------C------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE---EecCCeEE-ecCc
Q psy12134          2 LVIFFSKIELLYN---------R------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN---VIYPPEVS-VEKQ   62 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~---v~~~p~~~-~~~~   62 (139)
                      |+|+|+|.++...         +      +.|.|.....+|+|.|+|++.|..+. ....+.+.   +...|.+. ..+.
T Consensus        43 v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~~~~~~~~~~p~v~~~~p~  121 (323)
T 2wqr_A           43 ITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT-FEDSTKKCADSNPRGVSAYLSRPS  121 (323)
T ss_dssp             EEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEE-EEEEECCCCCSSGGGCEEEECCCC
T ss_pred             EEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCC-cceeeecCCCCCCCCCEEEEcCCC
Confidence            7899999876421         1      24667777777999999999997643 22222211   11234343 3343


Q ss_pred             eEeeCCCCeEEEEEEeeeCC-Cc---EEEE---cCeee----------------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         63 WIHTAPDMRAEIICNVYANP-PA---KRFD---EGTRF----------------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p-~~---~~~~---~~~~~----------------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      ...+..|+++.|.|.+.+.+ .+   .+.|   ++...                ....|.|..+..+|.|.|  .+.|..
T Consensus       122 ~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~  201 (323)
T 2wqr_A          122 PFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH  201 (323)
T ss_dssp             HHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             HHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCC
Confidence            34567899999999998864 45   6778   22221                112588888889999999  666664

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.18  E-value=5.6e-10  Score=72.67  Aligned_cols=101  Identities=18%  Similarity=0.253  Sum_probs=68.6

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEe----cCCeEE-ecCceEeeCCCCeEEEEEEeee-CCC--cEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI----YPPEVS-VEKQWIHTAPDMRAEIICNVYA-NPP--AKRF   87 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~----~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~--~~~~   87 (139)
                      .|.|.+++.+|+|.|.|.+.+... ........|.|.    .+|.+. ..+.. . ..|+.+.|.|.+.+ .|.  +.+.
T Consensus        82 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~-~~g~~v~L~C~~~~~~P~~~~~v~  159 (221)
T 3m8o_H           82 FLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCS-T-QPDGNVVIACLVQGFFPQEPLSVT  159 (221)
T ss_dssp             EEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCS-C-CCTTEEEEEEEEEEEBSSCSEEEE
T ss_pred             EEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcc-c-ccCCCEEEEEEEEeeECCCCEEEE
Confidence            599999999999999999998631 223445567775    345554 23322 2 67999999999998 565  3678


Q ss_pred             Ec--Ceee-----------ec------ceEEEEecCCCCceeE--EEEcccCC
Q psy12134         88 DE--GTRF-----------DE------GTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        88 ~~--~~~~-----------~~------~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |.  +..+           .+      ..|.|......|.|.|  .+.|..+.
T Consensus       160 W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          160 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             ESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             EEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            83  2211           11      2477888888899999  66666443

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.17  E-value=6.2e-10  Score=74.10  Aligned_cols=102  Identities=16%  Similarity=0.075  Sum_probs=67.4

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCC---CCceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeee-CCCc-EEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNI---GESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPA-KRF   87 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~---~~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~   87 (139)
                      .|.|.+++.+|+|.|.|.+.+..   .........|.|.    .+|.+........+..|+.+.|.|.+.+ .|.+ .+.
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~  159 (253)
T 3liz_H           80 FLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  159 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEE
Confidence            39999999999999999998752   1112344567776    4666654333334567999999999998 5655 678


Q ss_pred             E--cCe---------ee------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         88 D--EGT---------RF------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        88 ~--~~~---------~~------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      |  ++.         ..      ....|.+.....+| |.|  .+.|..+.
T Consensus       160 W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~  209 (253)
T 3liz_H          160 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS  209 (253)
T ss_dssp             EGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGT
T ss_pred             EEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCC
Confidence            8  332         01      11357777777888 999  77777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.17  E-value=6.2e-11  Score=82.97  Aligned_cols=73  Identities=12%  Similarity=0.081  Sum_probs=43.1

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCe
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR   71 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~   71 (139)
                      ++|+++++.+..          .++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...+           ..|+.
T Consensus       277 i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~~-----------~~g~~  344 (361)
T 2xot_A          277 KVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFN-ETLSVELKVYNFT-----------LHGHH  344 (361)
T ss_dssp             EEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSCE-EEEEEEEEEESSC-----------CC---
T ss_pred             EEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCCc-cEEEEEEEEEeee-----------ccCCc
Confidence            689997764322          2468999999999999999999999877 5778888886533           46889


Q ss_pred             EEEEEEeeeCCCcEE
Q psy12134         72 AEIICNVYANPPAKR   86 (139)
Q Consensus        72 ~~l~C~~~~~p~~~~   86 (139)
                      +.+.|.+.|.|+|.+
T Consensus       345 ~~l~C~~~g~P~P~i  359 (361)
T 2xot_A          345 DTLNAAADPWSHPQF  359 (361)
T ss_dssp             ---------------
T ss_pred             eEEEEEeCCCCCCcc
Confidence            999999999998875

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.16  E-value=5.6e-11  Score=71.44  Aligned_cols=53  Identities=25%  Similarity=0.320  Sum_probs=44.9

Q ss_pred             eEEEECCEEeeec-----------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN-----------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ++|+|||.++...                 .+.|.|.+++..|+|.|+|.|.|..|. .+..+.|.|...|
T Consensus        32 I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~-~~~t~~l~v~~~P  101 (126)
T 1he7_A           32 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP  101 (126)
T ss_dssp             EEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEE-EEEEEEECCCSCT
T ss_pred             EEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCe-EEEEEEEEEEcCC
Confidence            7899999887431                 257999999999999999999999998 5788888888766

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.14  E-value=2.3e-10  Score=81.96  Aligned_cols=103  Identities=17%  Similarity=0.091  Sum_probs=72.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC---------C--ceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeee
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG---------E--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYA   80 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~---------~--~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~   80 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+         .  .......|.|..    +|.+........+..|+.+.|.|.+.+
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g  158 (457)
T 1hzh_H           79 AYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD  158 (457)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEES
T ss_pred             EEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeE
Confidence            3799999999999999999998765         0  123456777764    565554333334578999999999998


Q ss_pred             C-CC-cEEEE--cCee--------e--ecc------eEEEEecCCCCceeE--EEEcccCC
Q psy12134         81 N-PP-AKRFD--EGTR--------F--DEG------TVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        81 ~-p~-~~~~~--~~~~--------~--~~~------~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      . |. +.+.|  ++..        .  .++      .|.|..+..+| |.|  .+.|..|.
T Consensus       159 ~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~  218 (457)
T 1hzh_H          159 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  218 (457)
T ss_dssp             BBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGT
T ss_pred             EeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCC
Confidence            7 53 67888  3311        0  112      57788888888 999  67776654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.13  E-value=1.2e-10  Score=67.18  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=42.0

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++.++...            ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus        37 v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   98 (100)
T 3knb_A           37 VTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGS-DSATVNIHIR   98 (100)
T ss_dssp             EEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCE-EEEEEEEEEE
Confidence            7899999887432            147999999999999999999999987 5777888775

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.13  E-value=1.9e-10  Score=74.39  Aligned_cols=87  Identities=14%  Similarity=0.092  Sum_probs=53.0

Q ss_pred             eEEEECCEEeee---------cCCeEEEcc---cCCCC---CEEEEEEEEcCCCCc-eeeeEEE--EEecCCeEEecCce
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDR---VTLKL---AGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~---v~~~d---~G~Y~C~~~n~~~~~-~s~~~~l--~v~~~p~~~~~~~~   63 (139)
                      +.|+|++.++..         .++.+.+..   +...|   +|.|+|.+.|..+.. ....+.+  .+..+|.+......
T Consensus        39 v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~  118 (207)
T 1l6x_A           39 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS  118 (207)
T ss_dssp             EEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCC
T ss_pred             EEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCC
Confidence            789999977532         123444322   34444   999999999987653 2222222  34567776543322


Q ss_pred             EeeCCCCeEEEEEEeeeC-CCc-EEEE
Q psy12134         64 IHTAPDMRAEIICNVYAN-PPA-KRFD   88 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~-p~~-~~~~   88 (139)
                      .....+..+.|.|.+.+. |++ .+.|
T Consensus       119 ~~~~~~~~~~L~C~~~g~~P~~~~v~W  145 (207)
T 1l6x_A          119 RDELTKNQVSLTCLVKGFYPSDIAVEW  145 (207)
T ss_dssp             GGGGGSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             hHHhcCCcEEEEEEEeCeECCCeEEEE
Confidence            222346679999999985 433 6778

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=1.7e-10  Score=66.59  Aligned_cols=52  Identities=13%  Similarity=0.009  Sum_probs=42.7

Q ss_pred             CeEEEECCEEeeecC----------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          1 MLVIFFSKIELLYNR----------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         1 ~~~W~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      .+.|+|+|.++....          ..|.|.+++.+|+|.|+|.+.|.  . .+..+.|.|..+|
T Consensus        36 ~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~-~~~~a~L~V~~~P   97 (100)
T 2yuz_A           36 PGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--N-VTLPAKVHVISGP   97 (100)
T ss_dssp             CEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--C-CCEEEEEEEECCS
T ss_pred             eEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--C-eeEEEEEEEeCCC
Confidence            378999998874321          37999999999999999999997  2 4678889998776

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2.6e-10  Score=65.36  Aligned_cols=53  Identities=19%  Similarity=0.345  Sum_probs=44.7

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+..        .++.|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|
T Consensus        40 v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~  100 (100)
T 2edj_A           40 ISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGE-TSWSAVLDVTESG  100 (100)
T ss_dssp             EEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCC-CBCCEEEEEESCC
T ss_pred             EEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCC-EEEEEEEEEecCC
Confidence            789999987752        3478999999999999999999999988 4788888887653

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.12  E-value=8.4e-10  Score=72.61  Aligned_cols=102  Identities=18%  Similarity=0.165  Sum_probs=62.7

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCC--CC---ceeeeEEEEEec----CCeEEe-cCceEeeCCC-CeEEEEEEeeeC-CCc
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNI--GE---STSKNFIVNVIY----PPEVSV-EKQWIHTAPD-MRAEIICNVYAN-PPA   84 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~--~~---~~s~~~~l~v~~----~p~~~~-~~~~~~~~~g-~~~~l~C~~~~~-p~~   84 (139)
                      .|.|.+++.+|+|.|.|.+.+..  +.   .......|.|..    +|.+.. .+. ..+..| +.+.|.|.+.+. |.+
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p  157 (232)
T 1dn0_B           79 SLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDS  157 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSC
T ss_pred             EEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCC
Confidence            79999999999999999998421  11   123456788865    355543 222 233468 899999999986 665


Q ss_pred             -EEEEc---Ceeee----------------cceEEEEecCC--CCceeE--EEEcccCC
Q psy12134         85 -KRFDE---GTRFD----------------EGTVTAKVLQP--FSERTL--SVQDKIGP  119 (139)
Q Consensus        85 -~~~~~---~~~~~----------------~~~l~i~~~~~--~d~g~y--~~~n~~g~  119 (139)
                       .+.|.   +..+.                ...|.|.....  .|.|.|  .+.|..|.
T Consensus       158 ~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~  216 (232)
T 1dn0_B          158 ITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN  216 (232)
T ss_dssp             CEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             eEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCC
Confidence             77883   33211                12345555554  678999  66777654

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.11  E-value=1.3e-09  Score=73.07  Aligned_cols=101  Identities=14%  Similarity=0.043  Sum_probs=67.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc--eeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-EEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KRF   87 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~--~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~   87 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+..  ......|.|..    +|.+........+..|+.+.|.|.+.+. |.+ .+.
T Consensus        85 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~  164 (261)
T 2xqy_G           85 VYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT  164 (261)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEE
Confidence            479999999999999999999864311  22445777864    4555433222245679999999999875 665 788


Q ss_pred             E--cCeee---------------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         88 D--EGTRF---------------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        88 ~--~~~~~---------------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      |  ++...               ....|.|.....+| |.|  .+.|..
T Consensus       165 W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~  212 (261)
T 2xqy_G          165 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPA  212 (261)
T ss_dssp             EGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGG
T ss_pred             EecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECC
Confidence            9  32211               12356777777777 999  566653

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.11  E-value=1.3e-10  Score=76.56  Aligned_cols=84  Identities=11%  Similarity=-0.016  Sum_probs=55.4

Q ss_pred             eEEEECCEEe-ee--------cC------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe------cCCeEEec
Q psy12134          2 LVIFFSKIEL-LY--------NR------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI------YPPEVSVE   60 (139)
Q Consensus         2 ~~W~~~~~~~-~~--------~~------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~------~~p~~~~~   60 (139)
                      ++|+++|..+ ..        .+      +.|.|.++..+|+|.|+|.+.|..+.   ..+.+.|.      .+|.+.+.
T Consensus        48 v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~---~~~~~~v~~~~~~~~~P~v~v~  124 (231)
T 2w59_A           48 VTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELP---LPLSKSVYRNTGPTTPPLIYPF  124 (231)
T ss_dssp             EEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCS---SCEEEEECCCCSCCBCCEEEEE
T ss_pred             EEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCC---CceEEEEecCCCCCcCCEEEEe
Confidence            7899988765 21        11      35899999999999999999997643   23334443      45666533


Q ss_pred             CceEeeCCCCeEEEEEEeeeCCC--cEEEE
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPP--AKRFD   88 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~--~~~~~   88 (139)
                      ........+..+.|.|.+.+.++  +.+.|
T Consensus       125 ~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W  154 (231)
T 2w59_A          125 APHPEELSLSRVTLSCLVRGFRPRDIEIRW  154 (231)
T ss_dssp             CCCGGGGGSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCCHHHhccCceEEEEEEEeccCCCcEEEE
Confidence            22111123567999999998643  56778

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.08  E-value=2.9e-10  Score=66.85  Aligned_cols=54  Identities=13%  Similarity=0.221  Sum_probs=45.1

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|+|++..+...          ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|...|.
T Consensus        39 i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           39 CTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVDKPD  102 (114)
T ss_dssp             EEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCE-EECCEEEEEECSCS
T ss_pred             EEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCc-EEEEEEEEEECCCC
Confidence            7899998766422          367999999999999999999999987 57889999987663

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.08  E-value=1.7e-10  Score=76.58  Aligned_cols=90  Identities=14%  Similarity=0.054  Sum_probs=47.4

Q ss_pred             cCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCC-----cEEEEc----Cee-
Q psy12134         23 VTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP-----AKRFDE----GTR-   92 (139)
Q Consensus        23 v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-----~~~~~~----~~~-   92 (139)
                      +...|+|.|+|.|.   |. ....+.+.+..++.+...+....+.+|+++.|.|.+.+.|+     +.+.|.    +.. 
T Consensus        11 v~~~dsg~Y~C~a~---g~-~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~   86 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GY-SFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP   86 (254)
T ss_dssp             -------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred             ecCCccEEEEEcCc---hh-hhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence            67899999999998   33 23344445555677777677788899999999999998883     677782    110 


Q ss_pred             -----------------e------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         93 -----------------F------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        93 -----------------~------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                                       .      ....|.|.++..+|.|.|  .+.|.
T Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  135 (254)
T 2c1o_A           87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSH  135 (254)
T ss_dssp             EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcC
Confidence                             0      112689999999999999  45555

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.07  E-value=7.8e-11  Score=70.02  Aligned_cols=59  Identities=24%  Similarity=0.251  Sum_probs=45.5

Q ss_pred             eEEEECCEEee------------------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecC
Q psy12134          2 LVIFFSKIELL------------------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK   61 (139)
Q Consensus         2 ~~W~~~~~~~~------------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~   61 (139)
                      +.|++++..+.                  ...+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|.+...+
T Consensus        42 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~-~~~~~~l~V~~~p~i~~~p  118 (122)
T 3s35_X           42 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAFGS  118 (122)
T ss_dssp             EEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEECC----
T ss_pred             EEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCCc-eEEEEEEEEeccCeEEeec
Confidence            68999876321                  12357999999999999999999999988 5788999999888776543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.07  E-value=6.6e-10  Score=63.58  Aligned_cols=52  Identities=23%  Similarity=0.374  Sum_probs=43.4

Q ss_pred             eEEEECCEEeeecC-----------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134          2 LVIFFSKIELLYNR-----------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~~~~~~~~-----------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      +.|+|++..+....           ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+
T Consensus        37 v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~   99 (100)
T 2kdg_A           37 VSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGE-ATFTVQLDVLAK   99 (100)
T ss_dssp             EEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred             EEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCe-EEEEEEEEEEec
Confidence            78999998765431           37999999999999999999999988 578888888654

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=6.7e-10  Score=65.66  Aligned_cols=53  Identities=9%  Similarity=0.003  Sum_probs=44.5

Q ss_pred             eEEEECCEEeeec---------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN---------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+...         ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|
T Consensus        56 i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~P  117 (118)
T 2e7c_A           56 VVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMK-DTATIRIRVVEKA  117 (118)
T ss_dssp             EEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCE-ECCEEEEEEECCC
T ss_pred             EEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCe-EEEEEEEEEEcCC
Confidence            7899999887521         245999999999999999999999987 6788888888765

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.07  E-value=2.5e-10  Score=66.73  Aligned_cols=69  Identities=17%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      .+|.|...+....+.+|+++.|.|.+.|.|.+.+.|  ++..+            ....|.|.++..+|.|.|  .|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            357777777778888999999999999999999988  44332            123689999999999999  88999


Q ss_pred             cCCCC
Q psy12134        117 IGPGP  121 (139)
Q Consensus       117 ~g~~~  121 (139)
                      +|...
T Consensus        92 ~G~~~   96 (107)
T 3knb_B           92 AGEAY   96 (107)
T ss_dssp             TEEEE
T ss_pred             CCEEE
Confidence            98754

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.07  E-value=3e-09  Score=69.08  Aligned_cols=72  Identities=14%  Similarity=0.112  Sum_probs=52.6

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCC--ceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeeeC-CCc-EEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KRFD   88 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~--~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~~   88 (139)
                      .|.|.+++.+|+|.|.|.+.|..+.  .......|.|..    +|.+........+..|+.+.|.|.+.+. |.+ .+.|
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  158 (215)
T 1c5d_H           79 FLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTW  158 (215)
T ss_dssp             EEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEE
Confidence            7999999999999999999986421  123446777763    4555433222234679999999999987 766 7889

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.07  E-value=1.5e-09  Score=70.77  Aligned_cols=83  Identities=17%  Similarity=0.091  Sum_probs=62.6

Q ss_pred             eEEEECCEEe-----eecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEE-ecCceEeeCCCCeEEEE
Q psy12134          2 LVIFFSKIEL-----LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS-VEKQWIHTAPDMRAEII   75 (139)
Q Consensus         2 ~~W~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~   75 (139)
                      |.|++.+..+     ......|.|.+++.+|+|.|.|.+.|..+. .+..+.|.|..+|... +.+.  ....|+.+ |.
T Consensus        40 i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~~~~~ltV~~~P~~~~i~~~--~~~~g~~~-l~  115 (210)
T 1gsm_A           40 VQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHTVQLLVYAFPNQLTVSPA--ALVPGDPE-VA  115 (210)
T ss_dssp             EEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCSEEEEESS--SBCTTCCE-EE
T ss_pred             eEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCc-eEEEEEEEEEecCCCcEEccc--eEEeCCce-EE
Confidence            7899865222     223468999999999999999999998766 5788999999988653 3332  44567888 99


Q ss_pred             EEeeeC-CC----cEEEE
Q psy12134         76 CNVYAN-PP----AKRFD   88 (139)
Q Consensus        76 C~~~~~-p~----~~~~~   88 (139)
                      |.+.+. |.    +.+.|
T Consensus       116 C~a~g~~P~~~~~lti~W  133 (210)
T 1gsm_A          116 CTAHKVTPVDPNALSFSL  133 (210)
T ss_dssp             EEEEEEBCCCTTTEEEEE
T ss_pred             EEeCCCCCCCCCCcEEEE
Confidence            999986 53    36777

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.06  E-value=9.7e-10  Score=62.45  Aligned_cols=53  Identities=26%  Similarity=0.347  Sum_probs=44.0

Q ss_pred             eEEEECCEEeeec------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+...      ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..++
T Consensus        31 v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~   89 (95)
T 4hwu_A           31 ISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDS-ETWIFMVNVTDAA   89 (95)
T ss_dssp             EEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEECCC-
T ss_pred             EEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCc-EEEEEEEEEeCCc
Confidence            7899999887442      478999999999999999999999886 5778888887654

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.06  E-value=1.3e-09  Score=76.69  Aligned_cols=87  Identities=9%  Similarity=0.046  Sum_probs=61.2

Q ss_pred             eEEEECCEEeee---------------cCCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEE--EEecCCeEEecCce
Q psy12134          2 LVIFFSKIELLY---------------NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l--~v~~~p~~~~~~~~   63 (139)
                      |.|+|+++.+..               ..+.|.|..+..+|+|.|+|++.+..+.. ....+.+  .+..+|.+.+.+..
T Consensus       204 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~  283 (376)
T 2aty_A          204 FSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPP  283 (376)
T ss_pred             EEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCC
Confidence            789999866421               11468999999999999999999876532 2222222  45567877765554


Q ss_pred             EeeCCCCeEEEEEEeeeCCC--cEEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPP--AKRFD   88 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~--~~~~~   88 (139)
                      .....|+.+.|.|.+.+.++  ..+.|
T Consensus       284 ~~~~~g~~~~L~C~~~g~~P~~i~v~W  310 (376)
T 2aty_A          284 KEQMAKDKVSLTCMITDFFPEDITVEW  310 (376)
T ss_pred             HHHhcCCceEEEEEEEEeECCCcEEEE
Confidence            44456899999999998644  35677

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.04  E-value=9e-12  Score=88.78  Aligned_cols=116  Identities=12%  Similarity=0.078  Sum_probs=74.9

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEE--EEecCCeEEecCce
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l--~v~~~p~~~~~~~~   63 (139)
                      ++|+|++..+...               .+.|.|.++..+|+|.|+|.+.|..+.. ....+.+  .+..+|.+...+..
T Consensus       266 i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~  345 (434)
T 1igy_B          266 FSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPP  345 (434)
T ss_dssp             BCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCC
T ss_pred             EEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCC
Confidence            7899998765311               2469999999999999999999988753 2233333  45567776544332


Q ss_pred             EeeCCCCeEEEEEEeeeCCC-c-EEEE--cCeee-----------ecc------eEEEEecCCCCceeE--EEEccc
Q psy12134         64 IHTAPDMRAEIICNVYANPP-A-KRFD--EGTRF-----------DEG------TVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~-~-~~~~--~~~~~-----------~~~------~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      .....|..+.|.|.+.+.+| + .+.|  ++..+           .++      .|.+.....+|.|.|  .|.|..
T Consensus       346 ~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~  422 (434)
T 1igy_B          346 KEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG  422 (434)
T ss_dssp             SSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             HHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCC
Confidence            22345778999999998543 3 6778  33321           111      244444555678999  666663

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.03  E-value=1.2e-08  Score=68.53  Aligned_cols=117  Identities=12%  Similarity=0.021  Sum_probs=79.3

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecCCeEE-ecCceEeeCCCCeEEEEEEe-
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVS-VEKQWIHTAPDMRAEIICNV-   78 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~-   78 (139)
                      +.|+|++.++......|.|..++..|+|.|+|.+.+..|.. .+..+.+.....+.+. ..+....+..+..+.|.+.+ 
T Consensus        38 YqWyKDG~~IsGaT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt  117 (304)
T 3shs_A           38 YTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVK  117 (304)
T ss_dssp             EEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEE
T ss_pred             EEEEECCccccCCcceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEe
Confidence            68999998887777899999999999999999999877654 2333333332222332 22344445567889999887 


Q ss_pred             -ee-CC-----CcEEEE--cCeeeec-ceEEEEecCCCCceeE--EEEcccC
Q psy12134         79 -YA-NP-----PAKRFD--EGTRFDE-GTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        79 -~~-~p-----~~~~~~--~~~~~~~-~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                       .+ .|     ...+.|  ++..... ..+++......+.|.|  .++|..|
T Consensus       118 ~SGGtppA~~~~yTYQWyKngt~IsgAq~lT~sS~TateaG~YtV~VTn~~~  169 (304)
T 3shs_A          118 FSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESE  169 (304)
T ss_dssp             ETTSCCSSTTCCCEEEEEETTEEEESSSEEEECSCCGGGCEEEEEEEESSSG
T ss_pred             ccCCCCcccCCCceeEEeeCCeEccCccccceeeEEecCCeEEEEEEEcCCC
Confidence             43 34     346778  3333332 2567777788899999  6777644

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=2.5e-10  Score=67.48  Aligned_cols=55  Identities=20%  Similarity=0.178  Sum_probs=45.5

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV   57 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~   57 (139)
                      +.|+|++..+..        .++.|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..++..
T Consensus        40 i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           40 ILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGE-ATWSAYIEVQEFGVP  102 (118)
T ss_dssp             EEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCE-EEEECCEEEECCSCC
T ss_pred             EEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCc-EEEEEEEEEEeCCCC
Confidence            789999877642        3578999999999999999999999988 577788888876543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.03  E-value=2.2e-09  Score=71.30  Aligned_cols=71  Identities=18%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             EEEcccCCCCCEEEEEEEEcCCC---C--ceeeeEEEEEe------cCCeEEec-CceEeeCCCCeEEEEEEeee-CCCc
Q psy12134         18 LDLDRVTLKLAGLYQCIASNNIG---E--STSKNFIVNVI------YPPEVSVE-KQWIHTAPDMRAEIICNVYA-NPPA   84 (139)
Q Consensus        18 L~i~~v~~~d~G~Y~C~~~n~~~---~--~~s~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~   84 (139)
                      |.|.+++.+|+|.|.|.+.+..+   .  .......|.|.      .+|.+... +....+..|+.+.|.|.+.+ .|++
T Consensus        76 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~  155 (253)
T 3to4_D           76 LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  155 (253)
T ss_dssp             CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCc
Confidence            99999999999999999987643   1  12334466665      45555432 22222234689999999998 5555


Q ss_pred             -EEEE
Q psy12134         85 -KRFD   88 (139)
Q Consensus        85 -~~~~   88 (139)
                       .+.|
T Consensus       156 i~v~W  160 (253)
T 3to4_D          156 VELSW  160 (253)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             5678

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.02  E-value=5.2e-09  Score=68.61  Aligned_cols=101  Identities=16%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCC-----C--ceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeCCC--
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIG-----E--STSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYANPP--   83 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~-----~--~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--   83 (139)
                      .|.|.+++.+|+|.|.|.+.+..+     .  .......|.|.    .+|.+........+..|+.+.|.|.+.+.+|  
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~  159 (230)
T 3n9g_H           80 YMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  159 (230)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSC
T ss_pred             EEEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCC
Confidence            399999999999999999987531     1  12244566664    3555553333334568999999999988543  


Q ss_pred             cEEEEcCeee------------ec------ceEEEEecCCCCceeE--EEEcccC
Q psy12134         84 AKRFDEGTRF------------DE------GTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        84 ~~~~~~~~~~------------~~------~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      ..+.|++...            .+      ..|.+......| |.|  .+.|..+
T Consensus       160 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~  213 (230)
T 3n9g_H          160 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  213 (230)
T ss_dssp             CEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGG
T ss_pred             EEEEECCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCC
Confidence            3468854321            01      257777777788 999  5666543

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.02  E-value=6.2e-10  Score=66.86  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=34.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      ..|+|.+++..|+|.|+|++.|..+. .+..+.|.|..
T Consensus        75 ~~L~I~~v~~~DaG~Y~Cevsn~~g~-~~~~~~L~V~~  111 (126)
T 2dav_A           75 FEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHE  111 (126)
T ss_dssp             EEEEECSCCTTSCEEEEEEEECSSCE-EEECCEEEEEC
T ss_pred             EEEEEccCCcccCEEEEEEEEeCCCc-EEEEEEEEEEe
Confidence            67999999999999999999999877 68999999998

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.01  E-value=2.2e-09  Score=81.20  Aligned_cols=119  Identities=13%  Similarity=-0.006  Sum_probs=82.8

Q ss_pred             eEEEECCEEeee-cCCeEEEccc-CCCCCEEEEEEEEcCCCCceeeeEEEEEe---cCCeEEecCceEeeCCCCeEEEEE
Q psy12134          2 LVIFFSKIELLY-NRESLDLDRV-TLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWIHTAPDMRAEIIC   76 (139)
Q Consensus         2 ~~W~~~~~~~~~-~~~~L~i~~v-~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C   76 (139)
                      +.|.|+|..... ....+.|..+ ....++.|.|.+.+..|......+.+.+.   .+|.+. .+....+..|+++.|.|
T Consensus       108 i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~-~~~~~~v~~G~~v~l~C  186 (731)
T 2v5y_A          108 PIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL-RIQNVEVNAGQFATFQC  186 (731)
T ss_dssp             EEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC-CCCCEEEETTSCEEEEE
T ss_pred             eeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc-cccceEEeCCCcEEEEE
Confidence            789998876533 3345666655 33345899998888777644444444332   456665 44557788999999999


Q ss_pred             EeeeCCCcEEE-Ec----Ceee------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         77 NVYANPPAKRF-DE----GTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        77 ~~~~~p~~~~~-~~----~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .+.+.|.+.+. |.    +..+            ..+.|.|..+...|.|.|  .|.|..|.+.
T Consensus       187 ~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~  250 (731)
T 2v5y_A          187 SAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI  250 (731)
T ss_dssp             EEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEE
T ss_pred             EeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcc
Confidence            99999987653 63    2221            124789999999999999  8899998743

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.01  E-value=5.7e-10  Score=65.96  Aligned_cols=54  Identities=20%  Similarity=0.197  Sum_probs=45.0

Q ss_pred             eEEEECCEEeeec--------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLYN--------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|+|+|..+...              .+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...|.
T Consensus        37 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~  104 (118)
T 1wwc_A           37 LHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEPF  104 (118)
T ss_dssp             EEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEE-EEEEEEECCSCCCC
T ss_pred             EEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCe-EeeEEEEEEccCCC
Confidence            7899999876432              247999999999999999999999988 57788888887763

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.01  E-value=6.9e-10  Score=63.98  Aligned_cols=68  Identities=16%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEEc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n  115 (139)
                      +|.|...+....+.+|+.+.|.|.+.+.|.|.+.|  ++..+              ....|.|.++..+|.|.|  .|.|
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   84 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN   84 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEE
Confidence            46666666777888999999999999999999988  44331              123689999999999999  8899


Q ss_pred             ccCCCC
Q psy12134        116 KIGPGP  121 (139)
Q Consensus       116 ~~g~~~  121 (139)
                      .+|...
T Consensus        85 ~~G~~~   90 (100)
T 3knb_A           85 EFGSDS   90 (100)
T ss_dssp             TTEEEE
T ss_pred             CCCEEE
Confidence            988754

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.01  E-value=1.3e-09  Score=62.25  Aligned_cols=51  Identities=18%  Similarity=0.158  Sum_probs=41.7

Q ss_pred             eEEEECCEEeeecC-----------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYNR-----------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~~-----------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|+|++..+....           ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..
T Consensus        37 v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~   98 (99)
T 1u2h_A           37 VSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGA-RQCEARLEVRG   98 (99)
T ss_dssp             EEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             EEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCc-eeEEEEEEEEC
Confidence            78999998764331           26999999999999999999999887 56777877753

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.01  E-value=1.4e-09  Score=62.08  Aligned_cols=51  Identities=20%  Similarity=0.056  Sum_probs=41.4

Q ss_pred             eEEEECCEEeeec---------C--CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYN---------R--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~--~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|+|++..+...         .  ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..
T Consensus        37 v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~   98 (99)
T 1g1c_A           37 CEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGE-TSSHAFLLVQA   98 (99)
T ss_dssp             EEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             EEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCc-EEEEEEEEEec
Confidence            7899999876432         1  36999999999999999999999887 46777777753

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.00  E-value=1e-09  Score=64.82  Aligned_cols=54  Identities=28%  Similarity=0.272  Sum_probs=44.9

Q ss_pred             eEEEECCEEeeec---------C-C--eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLYN---------R-E--SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~-~--~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|++++..+...         . .  .|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.
T Consensus        47 v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~p~  112 (116)
T 2kkq_A           47 LFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVTARPN  112 (116)
T ss_dssp             EEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEE-EEEEEEEEEECCSC
T ss_pred             EEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCe-EEEEEEEEEeCCCC
Confidence            7899999876531         1 1  7999999999999999999999987 57888898887663

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.00  E-value=9.3e-10  Score=61.52  Aligned_cols=47  Identities=26%  Similarity=0.299  Sum_probs=37.1

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|+|+|.++...          ...|.|.+++.+|+|.|+|.|.|.     +..+.|.|..
T Consensus        27 v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-----~~~a~l~V~e   83 (84)
T 2lu7_A           27 VRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD-----SRIFLVSVEE   83 (84)
T ss_dssp             CEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT-----CEEEEEEECC
T ss_pred             EEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE-----EEEEEEEEEC
Confidence            7899999987542          247999999999999999998553     4566777764

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.00  E-value=1.1e-09  Score=61.77  Aligned_cols=52  Identities=19%  Similarity=0.215  Sum_probs=42.9

Q ss_pred             eEEEECCEEeeec-CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYN-RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|+|++..+... ...|.|.+++.+|+|.|+|.+.|..|...+..+.|.|..
T Consensus        35 i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           35 YQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE   87 (91)
T ss_dssp             EEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC-
T ss_pred             EEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEEeh
Confidence            7899999887543 578999999999999999999999987555677777753

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.99  E-value=1.1e-09  Score=63.42  Aligned_cols=53  Identities=21%  Similarity=0.300  Sum_probs=40.0

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|++++..+..        ....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|
T Consensus        42 i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~  102 (108)
T 3kvq_A           42 IMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQ  102 (108)
T ss_dssp             EEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC----C-EEEEEEEEEEC--
T ss_pred             EEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCCCc-eEEEEEEEEeCCC
Confidence            789999877643        2478999999999999999999999988 5778888888765

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.99  E-value=1.2e-09  Score=73.28  Aligned_cols=73  Identities=15%  Similarity=0.079  Sum_probs=45.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC------------ceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEee
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE------------STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVY   79 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~------------~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~   79 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+.            .......|.|..    +|.+........+..|+.+.|.|.+.
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~  158 (257)
T 3bn9_D           79 LYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK  158 (257)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEe
Confidence            37999999999999999999987541            122345777864    45554322222346799999999999


Q ss_pred             eC-CCc-EEEE
Q psy12134         80 AN-PPA-KRFD   88 (139)
Q Consensus        80 ~~-p~~-~~~~   88 (139)
                      +. |.+ .+.|
T Consensus       159 g~~P~pi~v~W  169 (257)
T 3bn9_D          159 DYFPEPVTVSW  169 (257)
T ss_dssp             EEBSSCCEEEE
T ss_pred             eEECCCcEEEE
Confidence            86 666 7889

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.98  E-value=1.9e-09  Score=61.95  Aligned_cols=52  Identities=19%  Similarity=0.253  Sum_probs=42.9

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      +.|+|++..+...          ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|...
T Consensus        40 i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~  101 (103)
T 3qp3_A           40 VKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGE-ASDYATLDVTGG  101 (103)
T ss_dssp             EEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred             EEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCc-EEEEEEEEEECC
Confidence            7899999876432          146999999999999999999999888 477888887653

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=7.3e-09  Score=59.22  Aligned_cols=69  Identities=23%  Similarity=0.212  Sum_probs=55.3

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|  ++..+          ..+.|.|..+..+|.|.|  .+.|..|
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g   86 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSG   86 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSC
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCC
Confidence            467777666677788999999999999999999888  33321          345799999999999999  7888887


Q ss_pred             CCC
Q psy12134        119 PGP  121 (139)
Q Consensus       119 ~~~  121 (139)
                      ...
T Consensus        87 ~~~   89 (100)
T 2edj_A           87 ETS   89 (100)
T ss_dssp             CCB
T ss_pred             CEE
Confidence            653

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.98  E-value=7.4e-09  Score=74.60  Aligned_cols=102  Identities=18%  Similarity=0.172  Sum_probs=69.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC-----ceeeeEEEEEec----CCeEEecCceEeeCCCCeEEEEEEeeeC-CC-c
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE-----STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYAN-PP-A   84 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~-----~~s~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~   84 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+.     .....+.|.|..    +|.+..... ..+..|+.+.|.|.+.+. |. +
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p  158 (475)
T 1iga_A           80 AYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEP  158 (475)
T ss_pred             EEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCc
Confidence            47999999999999999999987642     123456777763    455543322 223689999999999987 54 4


Q ss_pred             -EEEEcCeee-------------ec------ceEEEEecCCCCceeE--EEEcccC
Q psy12134         85 -KRFDEGTRF-------------DE------GTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        85 -~~~~~~~~~-------------~~------~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                       .+.|.+...             .+      ..|.|......|.|.|  .+.|..|
T Consensus       159 ~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  214 (475)
T 1iga_A          159 LSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTN  214 (475)
T ss_pred             eEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCC
Confidence             778833221             11      1356666677889999  6777765

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.98  E-value=3e-09  Score=62.42  Aligned_cols=70  Identities=11%  Similarity=0.048  Sum_probs=54.7

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------e----cceEEEEecCCCCceeE--EEEcc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------D----EGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------~----~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      .+|.+...+....+..|+++.|.|.+.+.|.+.+.|  ++..+        .    ...|.|.++..+|.|.|  .+.|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence            356666666667888999999999999999999988  33221        1    35789999999999999  78888


Q ss_pred             cCCCCC
Q psy12134        117 IGPGPD  122 (139)
Q Consensus       117 ~g~~~~  122 (139)
                      .|....
T Consensus        86 ~g~~~~   91 (114)
T 2cqv_A           86 LGSRQA   91 (114)
T ss_dssp             SCEEEC
T ss_pred             CCcEEE
Confidence            885543

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.97  E-value=7.6e-09  Score=67.83  Aligned_cols=102  Identities=16%  Similarity=0.081  Sum_probs=62.5

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCC-------CceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeCCCc-
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIG-------ESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-   84 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~-------~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-   84 (139)
                      .|.|.+++.+|+|.|.|.+.+..+       ........|.|.    .+|.+........+..|+.+.|.|.+.+.+++ 
T Consensus        84 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~  163 (232)
T 3qhz_H           84 VLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  163 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSC
T ss_pred             EEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCC
Confidence            599999999999999999987621       112344566665    35666533333345579999999999986543 


Q ss_pred             -EEEE--cCee---------e-------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         85 -KRFD--EGTR---------F-------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        85 -~~~~--~~~~---------~-------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                       .+.|  ++..         .       ....|.+......| |.|  .+.|..+.
T Consensus       164 ~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~  218 (232)
T 3qhz_H          164 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  218 (232)
T ss_dssp             CEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred             eEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCC
Confidence             4578  3321         0       11246677777777 888  66666443

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.96  E-value=2.9e-10  Score=66.02  Aligned_cols=76  Identities=14%  Similarity=0.172  Sum_probs=47.7

Q ss_pred             EEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecCCCCceeE--E
Q psy12134         47 FIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQPFSERTL--S  112 (139)
Q Consensus        47 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~~~d~g~y--~  112 (139)
                      +.+.+..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|  ++...          ....|.|..+..+|.|.|  .
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   82 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ   82 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEE
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEE
Confidence            456677788887777777888999999999999999988888  33221          235799999999999999  7


Q ss_pred             EEcccCCCCC
Q psy12134        113 VQDKIGPGPD  122 (139)
Q Consensus       113 ~~n~~g~~~~  122 (139)
                      +.|..|....
T Consensus        83 a~n~~g~~~~   92 (108)
T 3kvq_A           83 ACSVLGCAKV   92 (108)
T ss_dssp             EC----CEEE
T ss_pred             EEeCCCceEE
Confidence            7888776543

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=2.1e-09  Score=61.66  Aligned_cols=53  Identities=23%  Similarity=0.350  Sum_probs=43.0

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+..      ....|.|.+++.+|+|.|+|.+.|..|. ....+.|.|...|
T Consensus        34 i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~   92 (99)
T 2cr3_A           34 INWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGS-DTTYFSVNVSDAL   92 (99)
T ss_dssp             EEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEE-EEEEEEECBCSCC
T ss_pred             EEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCce-EEEEEEEEEecCC
Confidence            789999876532      2468999999999999999999999877 4777777776543

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.94  E-value=7.1e-09  Score=69.08  Aligned_cols=101  Identities=16%  Similarity=0.080  Sum_probs=63.3

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCC---------C-ceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeCC
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIG---------E-STSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYANP   82 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~---------~-~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p   82 (139)
                      .|.|.+++.+|+|.|.|.+.+..+         . .......|.|.    .+|.+........+..|+.+.|.|.+.+.+
T Consensus       103 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~  182 (256)
T 3sob_H          103 YLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF  182 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEB
T ss_pred             EEEECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEE
Confidence            399999999999999999987421         0 12334456664    345555333333456799999999998743


Q ss_pred             C--cEEEEcCeee------------------ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         83 P--AKRFDEGTRF------------------DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        83 ~--~~~~~~~~~~------------------~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      |  ..+.|++...                  ....|.+.....+| |.|  .+.|..+
T Consensus       183 p~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~  239 (256)
T 3sob_H          183 PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  239 (256)
T ss_dssp             SSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred             CCCeEEEECCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCC
Confidence            3  3568954321                  01256777777788 999  5666543

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.94  E-value=2.7e-09  Score=61.02  Aligned_cols=49  Identities=20%  Similarity=0.326  Sum_probs=40.4

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+...           ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        40 v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V   99 (100)
T 3caf_A           40 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDV   99 (100)
T ss_dssp             EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             EEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCE-EEEEEEEEE
Confidence            6899999876432           248999999999999999999999887 467777765

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.94  E-value=9.1e-10  Score=62.33  Aligned_cols=50  Identities=20%  Similarity=0.150  Sum_probs=39.9

Q ss_pred             eEEEECC--EEeee--------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSK--IELLY--------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~--~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++  ..+..        ....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus        34 i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   93 (93)
T 1wit_A           34 ATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ   93 (93)
T ss_dssp             EEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred             EEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCe-EEEEEEEEEC
Confidence            7899998  65421        1267999999999999999999999987 5777777663

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.94  E-value=4e-09  Score=71.07  Aligned_cols=72  Identities=19%  Similarity=0.212  Sum_probs=50.1

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCC----C-ceeeeEEEEEec------CCeEEec-CceEeeCCCCeEEEEEEeeeCCC-
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIG----E-STSKNFIVNVIY------PPEVSVE-KQWIHTAPDMRAEIICNVYANPP-   83 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~----~-~~s~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~-   83 (139)
                      .|.|.+++.+|+|.|.|.+.|..+    . .......|.|..      +|.+... +....+..|+.+.|.|.+.+.+| 
T Consensus       101 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~  180 (279)
T 2wbj_D          101 TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD  180 (279)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSS
T ss_pred             EEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCC
Confidence            799999999999999999998432    0 112345677764      5655432 22223346899999999998744 


Q ss_pred             -cEEEE
Q psy12134         84 -AKRFD   88 (139)
Q Consensus        84 -~~~~~   88 (139)
                       +.+.|
T Consensus       181 ~~~v~W  186 (279)
T 2wbj_D          181 HVELSW  186 (279)
T ss_dssp             CEEEEE
T ss_pred             CcEEEE
Confidence             57788

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.93  E-value=3e-09  Score=65.77  Aligned_cols=57  Identities=19%  Similarity=0.141  Sum_probs=44.5

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEe
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV   59 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~   59 (139)
                      +.|+|++..+...           ...|.|.+++..|+|.|+|.+.|..|. ....+.|.|..+|.+..
T Consensus        73 v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~p~~~~  140 (154)
T 1fhg_A           73 VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE-ATCTAELLVETMGKEGE  140 (154)
T ss_dssp             EEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC-----
T ss_pred             EEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCe-EEEEEEEEEeCcCcCCC
Confidence            7899999876432           137999999999999999999999988 57888999988776543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.93  E-value=2.1e-09  Score=69.03  Aligned_cols=60  Identities=20%  Similarity=0.182  Sum_probs=44.7

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecC
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK   61 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~   61 (139)
                      +.|++++..+..       .++.|.|.+++.+|+|.|+|.+.|..|...+..+.|.|.++|.+...+
T Consensus       144 v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P  210 (212)
T 2v9r_A          144 ISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA  210 (212)
T ss_dssp             EEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--------
T ss_pred             EEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhhc
Confidence            789999988753       346899999999999999999999988754556899999988776543

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.4e-09  Score=62.64  Aligned_cols=54  Identities=26%  Similarity=0.295  Sum_probs=43.5

Q ss_pred             eEEEECCEEeeec--------C--CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEec
Q psy12134          2 LVIFFSKIELLYN--------R--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE   60 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~--~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~   60 (139)
                      +.|+|++..+...        +  ..|.|.+++.+|+|.|+|.+.|     .+..+.|.|..+|.+...
T Consensus        44 v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p~~~~~  107 (113)
T 2cpc_A           44 VRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD-----ESASFTVTVTEPPVRIIY  107 (113)
T ss_dssp             CEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS-----CEEEEEEEEECCCCCCCC
T ss_pred             EEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec-----CcEEEEEEEecCCchhcc
Confidence            7899999876431        1  5799999999999999999988     367888999988865443

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.93  E-value=2e-09  Score=61.21  Aligned_cols=49  Identities=24%  Similarity=0.432  Sum_probs=40.5

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+..      ....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        40 i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V   94 (95)
T 2ckn_A           40 INWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGS-DTTYFSVNV   94 (95)
T ss_dssp             EEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             eEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCc-EEEEEEEEE
Confidence            789999876643      3578999999999999999999999877 566777665

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.93  E-value=1.4e-09  Score=63.07  Aligned_cols=50  Identities=26%  Similarity=0.372  Sum_probs=40.9

Q ss_pred             eEEEECCEEeeec------------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN------------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+...                  ...|.|.+++.+|+|.|+|.+.|..|...+..+.|.|
T Consensus        44 i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           44 FAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            6899999876321                  2589999999999999999999998875567777766

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.93  E-value=3.8e-09  Score=60.18  Aligned_cols=50  Identities=16%  Similarity=0.246  Sum_probs=40.8

Q ss_pred             eEEEECCEEeeecC----------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYNR----------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++..+....          ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|.
T Consensus        38 v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~   97 (99)
T 3puc_A           38 AIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS-VSSSCKLTIK   97 (99)
T ss_dssp             EEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCc-EeEEEEEEEE
Confidence            78999998764321          26999999999999999999999887 5777777765

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.93  E-value=2.7e-09  Score=61.51  Aligned_cols=49  Identities=14%  Similarity=0.104  Sum_probs=40.1

Q ss_pred             eEEEECCEEeeecC------------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYNR------------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~~------------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+....            ..|.|.+++.+|+|.|+|.+.|     .+..+.|.|..+|
T Consensus        38 v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p   98 (103)
T 1x44_A           38 VKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG-----GQSSAKLSVDLKS   98 (103)
T ss_dssp             CEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT-----EEEEEEEEEECCC
T ss_pred             EEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC-----CcEEEEEEEeCCC
Confidence            78999998764432            5799999999999999999987     3677788888765

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=1.1e-09  Score=65.11  Aligned_cols=38  Identities=24%  Similarity=0.264  Sum_probs=34.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      ..|+|.+++..|+|.|+|++.|..|. .+..+.|.|..+
T Consensus        80 ~~L~I~~v~~~D~G~Y~Cevsn~~g~-~s~~~~L~V~~~  117 (118)
T 2edn_A           80 VELHIGKVVLGDRGYYRLEVKAKDTC-DSCGFNIDVEAP  117 (118)
T ss_dssp             EEEEESSCCTTTCSCEEEEEECSSCE-EEEEECCEEECC
T ss_pred             EEEEEeeCChhhCEEEEEEEEEcCCc-EEEEEEEEEEcC
Confidence            67999999999999999999999987 688899988764

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.92  E-value=5.5e-09  Score=59.44  Aligned_cols=51  Identities=24%  Similarity=0.260  Sum_probs=41.4

Q ss_pred             eEEEECCEEeeec--------C--CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYN--------R--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~--~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|+|++..+...        .  ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..
T Consensus        34 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~   94 (97)
T 2bk8_A           34 VTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE-DSSYAELFVKG   94 (97)
T ss_dssp             EEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEETT
T ss_pred             EEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe-EeEEEEEEEEe
Confidence            7899998876432        2  38999999999999999999999987 46677777753

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.92  E-value=2.8e-09  Score=76.37  Aligned_cols=114  Identities=15%  Similarity=0.114  Sum_probs=66.6

Q ss_pred             eEEEECCEEeee---------cCCeEEEcc---cCCCC---CEEEEEEEEcCCCCc-eeeeEEE--EEecCCeEEecCce
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDR---VTLKL---AGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~---v~~~d---~G~Y~C~~~n~~~~~-~s~~~~l--~v~~~p~~~~~~~~   63 (139)
                      +.|+|++.++..         .++.+.+..   +...|   +|.|+|.|.|..+.. ....+.+  .+..+|.+...+..
T Consensus       285 i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~  364 (457)
T 1hzh_H          285 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS  364 (457)
T ss_dssp             EEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCC
T ss_pred             EEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCC
Confidence            789999987632         124444432   34555   999999999865432 1222222  34567777644322


Q ss_pred             -EeeCCCCeEEEEEEeeeCCCc--EEEE--cCeeee-----------cc------eEEEEecCCCCceeE--EEEcc
Q psy12134         64 -IHTAPDMRAEIICNVYANPPA--KRFD--EGTRFD-----------EG------TVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        64 -~~~~~g~~~~l~C~~~~~p~~--~~~~--~~~~~~-----------~~------~l~i~~~~~~d~g~y--~~~n~  116 (139)
                       ..+..|+ +.|.|.+.+.+++  .+.|  ++..+.           ++      .|.+.....+|.|.|  .|.|.
T Consensus       365 ~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~  440 (457)
T 1hzh_H          365 RDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE  440 (457)
T ss_dssp             GGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             ccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEEC
Confidence             2334455 9999999986554  6778  444321           12      223333334678999  66665

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.92  E-value=3.8e-09  Score=60.06  Aligned_cols=47  Identities=17%  Similarity=0.042  Sum_probs=37.0

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|+|+|.++...          ...|.|.+++.+|+|.|+|.+.|.     ...+.|.|..
T Consensus        36 v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~-----~~sa~L~V~~   92 (93)
T 1waa_A           36 GQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT-----KSAANLKVKE   92 (93)
T ss_dssp             CEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE-----EEEEEEEEEC
T ss_pred             EEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC-----cEEEEEEEEc
Confidence            7899999887542          147999999999999999999873     3556676653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.91  E-value=2.2e-09  Score=68.81  Aligned_cols=55  Identities=27%  Similarity=0.477  Sum_probs=45.7

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|++++..+..        .+..|.|.+++.+|+|.|+|.+.|..|...+..+.|.|..++.
T Consensus       141 i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          141 IQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             EEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred             eEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence            789999987753        2378999999999999999999999999889999999988764

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.4e-09  Score=62.15  Aligned_cols=49  Identities=22%  Similarity=0.396  Sum_probs=40.1

Q ss_pred             eEEEECCEEeeec-------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN-------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+...       ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        43 v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V   98 (99)
T 2yr3_A           43 ITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQ-VSCSAWVTV   98 (99)
T ss_dssp             CEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSCE-EEEECCEEE
T ss_pred             EEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCCe-EEEEEEEEE
Confidence            6899998776432       257999999999999999999999987 466666665

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.91  E-value=1.5e-09  Score=75.22  Aligned_cols=86  Identities=10%  Similarity=0.019  Sum_probs=53.8

Q ss_pred             eEEEECCEEee--------ec------CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEE-----------------
Q psy12134          2 LVIFFSKIELL--------YN------RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIV-----------------   49 (139)
Q Consensus         2 ~~W~~~~~~~~--------~~------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l-----------------   49 (139)
                      ++|++++..+.        ..      .+.|.|.++..+| |.|+|.+.|..+.. ....+.+                 
T Consensus       154 v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  232 (344)
T 1za6_B          154 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSS  232 (344)
T ss_dssp             EEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------
T ss_pred             EEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCcc
Confidence            78999986521        01      1368898888888 99999999987652 1222211                 


Q ss_pred             -----EEecCCeEEecCceEeeCCCCeEEEEEEeeeCCC--cEEEE
Q psy12134         50 -----NVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP--AKRFD   88 (139)
Q Consensus        50 -----~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~~   88 (139)
                           .+..+|.+...........|..+.|.|.+.+.+|  +.+.|
T Consensus       233 l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W  278 (344)
T 1za6_B          233 GGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEW  278 (344)
T ss_dssp             ------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEE
T ss_pred             ccccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEE
Confidence                 1234666654332222234667999999998543  46778

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.91  E-value=1.5e-09  Score=62.46  Aligned_cols=71  Identities=14%  Similarity=0.091  Sum_probs=55.8

Q ss_pred             EecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEE
Q psy12134         51 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQ  114 (139)
Q Consensus        51 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~  114 (139)
                      +..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|  ++..+            ....|.|.++..+|.|.|  .+.
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   84 (103)
T 3qp3_A            5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT   84 (103)
T ss_dssp             TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence            44567777767777888999999999999999999988  33331            113689999999999999  788


Q ss_pred             cccCCCC
Q psy12134        115 DKIGPGP  121 (139)
Q Consensus       115 n~~g~~~  121 (139)
                      |..|...
T Consensus        85 N~~G~~~   91 (103)
T 3qp3_A           85 NYKGEAS   91 (103)
T ss_dssp             ETTEEEE
T ss_pred             eCCCcEE
Confidence            8888653

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.90  E-value=4.2e-09  Score=69.60  Aligned_cols=104  Identities=11%  Similarity=0.053  Sum_probs=65.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC-C-----ceeeeEEEEEecC-------CeEEec-CceEeeCCCCeEEEEEEeeeC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG-E-----STSKNFIVNVIYP-------PEVSVE-KQWIHTAPDMRAEIICNVYAN   81 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~-~-----~~s~~~~l~v~~~-------p~~~~~-~~~~~~~~g~~~~l~C~~~~~   81 (139)
                      ..|.|.+++.+|+|.|.|.+.+... .     .......|.|...       |.+.+. +....+..|+.+.|.|.+.+.
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~  159 (242)
T 1hxm_B           80 STLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKF  159 (242)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeE
Confidence            4699999999999999999987531 1     1234567778753       332221 222344569999999999986


Q ss_pred             -CC-cEEEE--cCe-ee----------ec------ceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         82 -PP-AKRFD--EGT-RF----------DE------GTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        82 -p~-~~~~~--~~~-~~----------~~------~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                       |. +.+.|  ++. .+          .+      ..|.|..... + |.|  .+.|..+...
T Consensus       160 ~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~  220 (242)
T 1hxm_B          160 FPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNG  220 (242)
T ss_dssp             SSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGG
T ss_pred             ECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCC
Confidence             53 57788  332 11          01      1355554443 3 889  6777766543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=7e-10  Score=64.60  Aligned_cols=53  Identities=28%  Similarity=0.335  Sum_probs=44.1

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+...           ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|
T Consensus        41 v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~p  104 (110)
T 2dm3_A           41 LSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQ-NSFSLELVVAAKE  104 (110)
T ss_dssp             EECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCE-EEECCEEEEECCC
T ss_pred             EEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCE-EEEEEEEEEeCCC
Confidence            7899988765432           137999999999999999999999988 6888889988755

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.89  E-value=2.4e-09  Score=71.13  Aligned_cols=87  Identities=14%  Similarity=0.071  Sum_probs=56.1

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCC-ceeeeEEE--EEecCCeEEecCce
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIV--NVIYPPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~-~~s~~~~l--~v~~~p~~~~~~~~   63 (139)
                      |+|+|+|.++...               .+.|.|......|.|.|+|++.|..+. .....+.+  .+..+|.+.+....
T Consensus        60 v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~  139 (240)
T 4acp_A           60 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS  139 (240)
T ss_dssp             EEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCC
T ss_pred             EEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCC
Confidence            7899999886311               145777766667899999999997653 22333332  24467777654433


Q ss_pred             EeeCCCCeEEEEEEeeeC-CCc-EEEE
Q psy12134         64 IHTAPDMRAEIICNVYAN-PPA-KRFD   88 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~-p~~-~~~~   88 (139)
                      .....|..+.|.|.+.+. |++ .+.|
T Consensus       140 ~~~~~g~~~~L~C~~~gf~P~~i~v~W  166 (240)
T 4acp_A          140 RDELTKNQVSLTCLVKGFYPSDIAVEW  166 (240)
T ss_dssp             GGGGGSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             hHHhcCCceEEEEEEeEEeCCCcEEEE
Confidence            222348899999999985 443 5677

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.89  E-value=5.4e-09  Score=61.67  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=61.0

Q ss_pred             ecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------e-c-c--eEEEEecCCCCceeE--EE
Q psy12134         52 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------D-E-G--TVTAKVLQPFSERTL--SV  113 (139)
Q Consensus        52 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~-~-~--~l~i~~~~~~d~g~y--~~  113 (139)
                      ..+|.+...+....+..|+++.|.|.+.+.|.+.+.|  ++..+          . . +  .|.|.++..+|.|.|  .+
T Consensus        13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            3467777677777888999999999999999998888  33221          1 1 1  799999999999999  77


Q ss_pred             EcccCCCCCCCCcceeeeeCCCCC
Q psy12134        114 QDKIGPGPDSNLRPSAYMADAPPT  137 (139)
Q Consensus       114 ~n~~g~~~~~~~~~~~~~~~~~~~  137 (139)
                      .|..|...   ....+.+...|+.
T Consensus        93 ~N~~G~~~---~~~~l~V~~~p~~  113 (116)
T 2kkq_A           93 VNEAGVTT---CNTRLDVTARPNQ  113 (116)
T ss_dssp             EETTEEEE---EEEEEEEECCSCC
T ss_pred             EcCCCeEE---EEEEEEEeCCCCC
Confidence            88888653   2444555555443

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.89  E-value=7.4e-09  Score=58.29  Aligned_cols=67  Identities=10%  Similarity=0.041  Sum_probs=52.9

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +.+...+....+..|+.+.|.|.+.+.|.+.+.|  ++...   ....|.|..+..+|.|.|  .+.|..|...
T Consensus         4 ~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~   77 (91)
T 3bfo_A            4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQD   77 (91)
T ss_dssp             CEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             eEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCCEE
Confidence            4455556566788999999999999999998888  44442   345799999999999999  7788887543

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=2e-09  Score=62.68  Aligned_cols=53  Identities=23%  Similarity=0.105  Sum_probs=43.4

Q ss_pred             eEEEECCEEeeec----------C--CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN----------R--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~--~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+...          +  ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|...|
T Consensus        40 v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~~  104 (110)
T 2dm2_A           40 IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGR-ISCTGRLMVQAVN  104 (110)
T ss_dssp             EEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCC-EEECCCEEEECCS
T ss_pred             EEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCe-EEEEEEEEEECCC
Confidence            7899998776431          1  26999999999999999999999988 5788888887654

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.88  E-value=1.9e-08  Score=66.82  Aligned_cols=73  Identities=18%  Similarity=0.249  Sum_probs=50.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC--CceeeeEEEEEe------cCCeEEec-CceEeeCCCCeEEEEEEeeeC-CC-c
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG--ESTSKNFIVNVI------YPPEVSVE-KQWIHTAPDMRAEIICNVYAN-PP-A   84 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~--~~~s~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~   84 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+  ........|.|.      .+|.+... +....+..|+.+.|.|.+.+. |+ +
T Consensus        76 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~  155 (252)
T 1oga_E           76 FPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  155 (252)
T ss_dssp             CCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCc
Confidence            4799999999999999999998621  111233456665      35666543 322233468999999999986 54 3


Q ss_pred             EEEE
Q psy12134         85 KRFD   88 (139)
Q Consensus        85 ~~~~   88 (139)
                      .+.|
T Consensus       156 ~v~W  159 (252)
T 1oga_E          156 ELSW  159 (252)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6788

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=98.88  E-value=1.2e-08  Score=66.80  Aligned_cols=101  Identities=16%  Similarity=0.071  Sum_probs=65.1

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCC--------CceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeeeCCC-
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIG--------ESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYANPP-   83 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~--------~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-   83 (139)
                      .|.|.+++.+|+|.|.|.+.+..+        ........|.|.    .+|.+........+..|..+.|.|.+.+.+| 
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~  159 (226)
T 3mlr_H           80 YLQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  159 (226)
T ss_dssp             EEEESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSS
T ss_pred             EEEECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECC
Confidence            499999999999999999976421        001233456663    3555553333334568999999999988543 


Q ss_pred             -cEEEEcCeee------------ec------ceEEEEecCCCCceeE--EEEcccC
Q psy12134         84 -AKRFDEGTRF------------DE------GTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        84 -~~~~~~~~~~------------~~------~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                       ..+.|++...            .+      ..|.+.....+| |.|  .+.|..+
T Consensus       160 ~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~  214 (226)
T 3mlr_H          160 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  214 (226)
T ss_dssp             CCEEEEGGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred             CeEEEECCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCC
Confidence             4568944321            01      256777777777 888  5666544

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.88  E-value=6.4e-09  Score=68.47  Aligned_cols=73  Identities=22%  Similarity=0.245  Sum_probs=51.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC----CceeeeEEEEEec------CCeEEec-CceEeeCCCCeEEEEEEeeeC-CC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG----ESTSKNFIVNVIY------PPEVSVE-KQWIHTAPDMRAEIICNVYAN-PP   83 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~----~~~s~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~   83 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+    ........|.|..      +|.+... +....+..|+.+.|.|.+.+. |+
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~  151 (238)
T 1bec_A           72 FSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPD  151 (238)
T ss_dssp             EEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSC
T ss_pred             EEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCC
Confidence            4799999999999999999998742    1122345677764      5666533 333344579999999999986 54


Q ss_pred             c-EEEE
Q psy12134         84 A-KRFD   88 (139)
Q Consensus        84 ~-~~~~   88 (139)
                      + .+.|
T Consensus       152 ~~~v~W  157 (238)
T 1bec_A          152 HVELSW  157 (238)
T ss_dssp             CEEEEE
T ss_pred             CcEEEE
Confidence            4 6788

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.88  E-value=1.2e-08  Score=61.66  Aligned_cols=73  Identities=8%  Similarity=-0.112  Sum_probs=57.7

Q ss_pred             EecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcCee--e-------------------------ecceEEEEec
Q psy12134         51 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTR--F-------------------------DEGTVTAKVL  103 (139)
Q Consensus        51 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~~~--~-------------------------~~~~l~i~~~  103 (139)
                      ...+|.+...+....+..|+++.|.|.+.+.|.+.+.|....  .                         ....|.|.++
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence            346788888788888889999999999999999998882211  0                         2357999999


Q ss_pred             CCCCceeE--EEEcccCCCCCC
Q psy12134        104 QPFSERTL--SVQDKIGPGPDS  123 (139)
Q Consensus       104 ~~~d~g~y--~~~n~~g~~~~~  123 (139)
                      ..+|.|.|  .|.|.+|.....
T Consensus        98 ~~~D~G~Y~C~a~N~~G~~~~~  119 (137)
T 3qr2_A           98 VEEDTGTYECRASNDPDRNHLT  119 (137)
T ss_dssp             CGGGCEEEEEEEECCTTSSSCC
T ss_pred             CcccCEEEEEEEEecCCcccee
Confidence            99999999  889999988654

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=5.2e-09  Score=60.94  Aligned_cols=69  Identities=14%  Similarity=0.226  Sum_probs=53.3

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeeee------------cc--eEEEEecCCCCceeE--EEE
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRFD------------EG--TVTAKVLQPFSERTL--SVQ  114 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~------------~~--~l~i~~~~~~d~g~y--~~~  114 (139)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|  ++..+.            .+  .|.|..+..+|.|.|  .+.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA   86 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEE
Confidence            356666566667788999999999999999999988  322210            12  588999999999999  788


Q ss_pred             cccCCCC
Q psy12134        115 DKIGPGP  121 (139)
Q Consensus       115 n~~g~~~  121 (139)
                      |..|...
T Consensus        87 N~~g~~~   93 (110)
T 2dm2_A           87 NPQGRIS   93 (110)
T ss_dssp             CTTCCEE
T ss_pred             ECCCeEE
Confidence            9888753

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.87  E-value=2.7e-09  Score=60.94  Aligned_cols=68  Identities=10%  Similarity=0.121  Sum_probs=53.0

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------ec--ceEEEEecCCCCceeE--EEEc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------DE--GTVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~--~~l~i~~~~~~d~g~y--~~~n  115 (139)
                      .+|.+...+....+..|+++.|.|.+.+.|.+.+.|  ++..+           ..  ..|.|..+..+|.|.|  .+.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            456666556667778999999999999999999888  43331           11  2789999999999999  7888


Q ss_pred             ccCCC
Q psy12134        116 KIGPG  120 (139)
Q Consensus       116 ~~g~~  120 (139)
                      ..|..
T Consensus        84 ~~g~~   88 (100)
T 2kdg_A           84 RAGEA   88 (100)
T ss_dssp             TTEEE
T ss_pred             CCCeE
Confidence            88864

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.87  E-value=5.3e-09  Score=65.69  Aligned_cols=55  Identities=18%  Similarity=0.331  Sum_probs=46.2

Q ss_pred             eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|++++..+..  ....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.
T Consensus       118 ~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          118 VIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEEEECCEEEeeecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            789999988754  3688999999999999999999997555467778999988773

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=3.1e-09  Score=60.66  Aligned_cols=71  Identities=13%  Similarity=0.107  Sum_probs=56.4

Q ss_pred             EecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         51 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        51 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      +..+|.+...+....+..|+++.|.|.+.+.|.+.+.|  ++...         ....|.|..+..+|.|.|  .+.|..
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   87 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENAL   87 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSS
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECC
Confidence            45677777767777889999999999999999988888  33321         124799999999999999  788888


Q ss_pred             CCCC
Q psy12134        118 GPGP  121 (139)
Q Consensus       118 g~~~  121 (139)
                      |...
T Consensus        88 g~~~   91 (99)
T 2yr3_A           88 GQVS   91 (99)
T ss_dssp             CEEE
T ss_pred             CeEE
Confidence            8643

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.87  E-value=2e-08  Score=66.28  Aligned_cols=101  Identities=19%  Similarity=0.069  Sum_probs=63.1

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCC-----------C-ceeeeEEEEEe----cCCeEEecCceEeeCCCCeEEEEEEeee
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIG-----------E-STSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYA   80 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~-----------~-~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~   80 (139)
                      .|.|.+++.+|+|.|.|.+.+..+           . .......|.|.    .+|.+........+..|+.+.|.|.+.+
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~  166 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD  166 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEee
Confidence            499999999999999999986521           0 01233456664    3555653333334456999999999988


Q ss_pred             C-CCcE-EEE--cCee---------e-------ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         81 N-PPAK-RFD--EGTR---------F-------DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        81 ~-p~~~-~~~--~~~~---------~-------~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      . |++. +.|  ++..         .       ....|.+......| |.|  .+.|..+
T Consensus       167 ~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~  225 (239)
T 3tv3_H          167 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  225 (239)
T ss_dssp             EBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred             EeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCC
Confidence            4 4343 578  2321         0       11246677777777 888  6666644

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.85  E-value=6e-09  Score=59.39  Aligned_cols=50  Identities=22%  Similarity=0.145  Sum_probs=39.7

Q ss_pred             eEEEECCEEe-----eecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIEL-----LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++...     ...++.|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|.
T Consensus        43 v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~   97 (98)
T 1gl4_B           43 LVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAM-DQGTATLHVQ   97 (98)
T ss_dssp             EEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEC
T ss_pred             EEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCCc-cccEEEEEEe
Confidence            7899975332     223578999999999999999999999887 5777777764

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.85  E-value=7.4e-09  Score=58.98  Aligned_cols=69  Identities=12%  Similarity=0.033  Sum_probs=53.4

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------ecc---eEEEEecCCCCceeE--EEEc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------DEG---TVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~---~l~i~~~~~~d~g~y--~~~n  115 (139)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|  ++..+          ..+   .|.|..+..+|.|.|  .+.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            356666666667788999999999999999999888  33321          111   589999999999999  7888


Q ss_pred             ccCCCC
Q psy12134        116 KIGPGP  121 (139)
Q Consensus       116 ~~g~~~  121 (139)
                      ..|...
T Consensus        84 ~~g~~~   89 (99)
T 1u2h_A           84 EYGARQ   89 (99)
T ss_dssp             TTEEEE
T ss_pred             CCCcee
Confidence            887654

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=2.9e-09  Score=60.58  Aligned_cols=52  Identities=17%  Similarity=0.264  Sum_probs=41.0

Q ss_pred             eEEEECCEEeee-cCCeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLY-NRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~~   53 (139)
                      +.|+|++..+.. ....|.|.+++.+|+|.|+|.+.|..+ ...+..+.|.|..
T Consensus        42 v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~v~V~~   95 (96)
T 2ens_A           42 IHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE   95 (96)
T ss_dssp             CCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEECCSSCCCEECCCEEEEECC
T ss_pred             EEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEEEEEeC
Confidence            689999887654 467899999999999999999999654 3355666666653

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=1.3e-08  Score=59.99  Aligned_cols=82  Identities=11%  Similarity=0.099  Sum_probs=57.9

Q ss_pred             EecCCeEEe---cCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeeee-----------cceEEEEecCCCCceeE--E
Q psy12134         51 VIYPPEVSV---EKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRFD-----------EGTVTAKVLQPFSERTL--S  112 (139)
Q Consensus        51 v~~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~-----------~~~l~i~~~~~~d~g~y--~  112 (139)
                      +..+|.+..   ......+..|+.+.|.|.+.+.|.+.+.|  ++..+.           ...|.|.++..+|.|.|  .
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   97 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELS   97 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEE
Confidence            345666643   23556778899999999999999999988  433321           23499999999999999  7


Q ss_pred             EEcccCCCCCCCCcceeeeeCCC
Q psy12134        113 VQDKIGPGPDSNLRPSAYMADAP  135 (139)
Q Consensus       113 ~~n~~g~~~~~~~~~~~~~~~~~  135 (139)
                      +.|..|...   ....+.+.+.|
T Consensus        98 a~N~~G~~~---~~~~l~V~~~P  117 (118)
T 2e7c_A           98 VQIENMKDT---ATIRIRVVEKA  117 (118)
T ss_dssp             EECSSCEEC---CEEEEEEECCC
T ss_pred             EEeCCCeEE---EEEEEEEEcCC
Confidence            889888543   33444444443

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.84  E-value=8.6e-09  Score=59.93  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=32.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|.
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~  107 (108)
T 3cx2_A           72 FELHITDAQPAFTGSYRCEVSTKDKF-DCSNFNLTVH  107 (108)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEE
T ss_pred             EEEEEecCCCccCEEEEEEEecCCCc-eEEEEEEEEe
Confidence            57999999999999999999999988 5788888875

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.83  E-value=9.8e-09  Score=64.43  Aligned_cols=52  Identities=15%  Similarity=0.259  Sum_probs=43.7

Q ss_pred             eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|+|++..+..  ....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..
T Consensus       121 ~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          121 VTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             EEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEECCeEccCCCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            789999988754  4688999999999999999999997665567778888764

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.83  E-value=2.4e-08  Score=58.67  Aligned_cols=39  Identities=15%  Similarity=0.030  Sum_probs=33.4

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +++|.|.+++.+|+|.|+|++.+..+...+..+.|.|..
T Consensus        71 ngSL~I~nvt~~D~G~Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           71 NASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             CCcEEEccCcccCCeEEEEEEEeCCCcEEEEEEEEEEec
Confidence            589999999999999999999998764457788888875

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.83  E-value=8.8e-09  Score=59.45  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=33.4

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ...|.|.+++.+|+|.|+|.+.| .+. .+..+.|.|..+|
T Consensus        70 ~~~L~I~~v~~~D~G~Y~C~~~n-~~~-~~~~~~L~V~~~P  108 (108)
T 3m45_A           70 ELSISVSDVSLSDEGQYTCSLFT-MPV-KTSKAYLTVLGVP  108 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECS-SSC-EEEEEEEEEECCC
T ss_pred             cEEEEECCCChhHCeEEEEEEEc-CCC-cEEEEEEEEEcCC
Confidence            35799999999999999999999 665 6888888888765

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.83  E-value=6.1e-09  Score=67.22  Aligned_cols=56  Identities=18%  Similarity=0.208  Sum_probs=44.2

Q ss_pred             eEEEECCEEeeec-------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE
Q psy12134          2 LVIFFSKIELLYN-------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV   57 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~   57 (139)
                      +.|++++..+...             .+.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|..++.+
T Consensus       140 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~  208 (212)
T 2yd6_A          140 ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH  208 (212)
T ss_dssp             EEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             EEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecccc
Confidence            7899999876532             2789999999999999999999999987788899998876643

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.82  E-value=7.7e-09  Score=65.39  Aligned_cols=54  Identities=26%  Similarity=0.303  Sum_probs=44.3

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|++++..+..       ..+.|.|.+++.+|+|.|+|.+.|..|...+..+.|.|..+|
T Consensus       132 v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          132 VSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            789999987643       246899999999999999999999998755677889888765

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.82  E-value=8.8e-08  Score=69.85  Aligned_cols=84  Identities=12%  Similarity=0.021  Sum_probs=55.7

Q ss_pred             eEEEECCEEeee----------cC------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE--E--ecCCeEEecC
Q psy12134          2 LVIFFSKIELLY----------NR------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN--V--IYPPEVSVEK   61 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~--v--~~~p~~~~~~   61 (139)
                      ++|+|++..+..          .+      +.|.|..+...|.|.|+|++.|..+......+...  +  ..+|.+...+
T Consensus       331 i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~  410 (512)
T 1zvo_C          331 LTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLA  410 (512)
T ss_pred             EEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEc
Confidence            789999987541          01      35889888889999999999998754222222211  1  3456665433


Q ss_pred             ceEeeCCCCeEE-EEEEeeeCCCc--EEEE
Q psy12134         62 QWIHTAPDMRAE-IICNVYANPPA--KRFD   88 (139)
Q Consensus        62 ~~~~~~~g~~~~-l~C~~~~~p~~--~~~~   88 (139)
                      ...   .|+.+. |.|.+.+.+|+  .+.|
T Consensus       411 ~~~---~~~~~~~L~C~~~g~~P~~i~v~W  437 (512)
T 1zvo_C          411 SSD---PPEAASWLLCEVSGFSPPNILLMW  437 (512)
T ss_pred             cCc---CCCCceEEEEEEeeeCCCCcEEEE
Confidence            221   688899 99999986554  3567

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.82  E-value=2.9e-09  Score=60.37  Aligned_cols=45  Identities=20%  Similarity=0.297  Sum_probs=34.4

Q ss_pred             eEEEECCEEeeecC----------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYNR----------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|+|.++...+          ..|.|.+++.+|+|.|+|.|.|.     +..+.|.|
T Consensus        37 v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-----~~~~~ltV   91 (91)
T 2lvc_A           37 VRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE-----CAYFTVTI   91 (91)
T ss_dssp             CEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC-----EEEEEEEC
T ss_pred             EEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce-----EEEEEEEC
Confidence            78999998764321          46999999999999999999763     44455543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.82  E-value=1.2e-08  Score=58.03  Aligned_cols=68  Identities=10%  Similarity=0.115  Sum_probs=53.3

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------ec--ceEEEEecCCCCceeE--EEEcc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------DE--GTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~--~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|  ++...           ..  ..|.|..+..+|.|.|  .|.|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   84 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI   84 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEEC
Confidence            56666666667788999999999999999999888  33321           11  2689999999999999  78888


Q ss_pred             cCCCC
Q psy12134        117 IGPGP  121 (139)
Q Consensus       117 ~g~~~  121 (139)
                      .|...
T Consensus        85 ~g~~~   89 (99)
T 1g1c_A           85 AGETS   89 (99)
T ss_dssp             TEEEE
T ss_pred             CCcEE
Confidence            88654

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.82  E-value=6.8e-09  Score=61.09  Aligned_cols=80  Identities=13%  Similarity=0.135  Sum_probs=58.7

Q ss_pred             ecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEE-----ecCCCCcee
Q psy12134         52 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAK-----VLQPFSERT  110 (139)
Q Consensus        52 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~-----~~~~~d~g~  110 (139)
                      ..+|.+...+....+..|+.+.|.|.+.+.|.|.+.|  ++..+              ..+.+.+.     ++..+|.|.
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~   86 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEE
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEE
Confidence            4567777767777888999999999999999999988  33221              12334333     346899999


Q ss_pred             E--EEEcccCCCCCCCCcceeee
Q psy12134        111 L--SVQDKIGPGPDSNLRPSAYM  131 (139)
Q Consensus       111 y--~~~n~~g~~~~~~~~~~~~~  131 (139)
                      |  .+.|.+|.......+...+.
T Consensus        87 Y~C~a~N~~G~~~s~~~~l~~~~  109 (117)
T 2v9t_A           87 YVCVARNYLGEAVSHDASLEVAA  109 (117)
T ss_dssp             EEEEEEETTEEEECCCEEEEEC-
T ss_pred             EEEEEEeCccceEeeeEEEEhhh
Confidence            9  89999998887766655543

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.82  E-value=5.4e-08  Score=64.70  Aligned_cols=101  Identities=17%  Similarity=0.091  Sum_probs=60.9

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCC---------------------CceeeeEEEEEe----cCCeEEecCceEeeCCCCe
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIG---------------------ESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMR   71 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~---------------------~~~s~~~~l~v~----~~p~~~~~~~~~~~~~g~~   71 (139)
                      .|.|.+++.+|+|.|.|.+.+..+                     ........|.|.    .+|.+........+..|+.
T Consensus        79 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~  158 (248)
T 3u2s_H           79 YLQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGT  158 (248)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CE
T ss_pred             EEEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCc
Confidence            499999999999999999986410                     012234566665    3565653333334456999


Q ss_pred             EEEEEEeeeCCC--cEEEE--cCee----------eec------ceEEEEecCCCCceeE--EEEcccC
Q psy12134         72 AEIICNVYANPP--AKRFD--EGTR----------FDE------GTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        72 ~~l~C~~~~~p~--~~~~~--~~~~----------~~~------~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      +.|.|.+.+.+|  ..+.|  ++..          ..+      ..|.+......+ |.|  .+.|..+
T Consensus       159 ~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~  226 (248)
T 3u2s_H          159 AALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  226 (248)
T ss_dssp             EEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGG
T ss_pred             EEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCC
Confidence            999999987543  34678  3321          011      245666666677 888  6666643

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=5.4e-09  Score=60.75  Aligned_cols=68  Identities=9%  Similarity=0.129  Sum_probs=54.5

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------e--cceEEEEecCCCCceeE--EEEc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------D--EGTVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~--~~~l~i~~~~~~d~g~y--~~~n  115 (139)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|  ++..+           .  ...|.|.++..+|.|.|  .+.|
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   87 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN   87 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence            467777777778888999999999999999999988  32221           1  12789999999999999  7889


Q ss_pred             ccCCC
Q psy12134        116 KIGPG  120 (139)
Q Consensus       116 ~~g~~  120 (139)
                      ..|..
T Consensus        88 ~~g~~   92 (110)
T 2dm3_A           88 RAGQN   92 (110)
T ss_dssp             SSCEE
T ss_pred             CCCEE
Confidence            88874

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.81  E-value=6.9e-09  Score=58.60  Aligned_cols=68  Identities=7%  Similarity=0.136  Sum_probs=53.5

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cC--eee----------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EG--TRF----------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~--~~~----------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|  ++  ..+          ....|.|..+..+|.|.|  .|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   81 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCC
Confidence            46665556677888999999999999999999988  44  321          124688889999999999  889998


Q ss_pred             CCCC
Q psy12134        118 GPGP  121 (139)
Q Consensus       118 g~~~  121 (139)
                      |...
T Consensus        82 G~~~   85 (93)
T 1wit_A           82 GEDE   85 (93)
T ss_dssp             EEEE
T ss_pred             CeEE
Confidence            8543

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.2e-08  Score=58.78  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=39.1

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+...          ...|.|.+++.+|+|.|+|.+.|.     +..+.|.|..+|
T Consensus        41 v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-----~~~~~l~V~~~P   99 (104)
T 2e6p_A           41 ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGV-----SAFFGVTVQDPS   99 (104)
T ss_dssp             CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSC-----CCCEEEEEECCC
T ss_pred             cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCc-----eEEEEEEEcCCC
Confidence            5899999876432          146999999999999999999886     346677787766

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.80  E-value=1.2e-08  Score=65.84  Aligned_cols=54  Identities=15%  Similarity=0.190  Sum_probs=44.0

Q ss_pred             eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+..  ....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|
T Consensus       121 v~W~k~g~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          121 VTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             EEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEECCcEeecccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence            789999988754  467899999999999999999999654446788889888654

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.80  E-value=1.1e-08  Score=64.58  Aligned_cols=53  Identities=11%  Similarity=0.144  Sum_probs=46.2

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|++++..+......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|...|
T Consensus       129 v~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~-~~~~~~l~V~~~p  181 (184)
T 2ny1_B          129 VQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQ  181 (184)
T ss_dssp             EEEECTTSCEEEESSEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCC
T ss_pred             EEEEeCCCccccCceEEEEecCCcCCCeEEEEEEEECCce-EEEEEEEEEEecC
Confidence            7899999888778899999999999999999999997766 5778888887655

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.80  E-value=1.3e-08  Score=57.87  Aligned_cols=69  Identities=13%  Similarity=0.107  Sum_probs=53.1

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------e--cceEEEEecCCCCceeE--EEEcc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------D--EGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~--~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|  ++...          .  ...|.|..+..+|.|.|  .+.|.
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            356666666667888999999999999999999888  33321          1  11689999999999999  77888


Q ss_pred             cCCCC
Q psy12134        117 IGPGP  121 (139)
Q Consensus       117 ~g~~~  121 (139)
                      .|...
T Consensus        85 ~g~~~   89 (99)
T 3puc_A           85 AGSVS   89 (99)
T ss_dssp             TEEEE
T ss_pred             CCcEe
Confidence            77643

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.79  E-value=9.5e-09  Score=66.58  Aligned_cols=49  Identities=18%  Similarity=0.274  Sum_probs=39.6

Q ss_pred             eEEEECCEEeeec--------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN--------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++.++...        ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.+
T Consensus       149 i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~~  205 (207)
T 3rbs_A          149 IVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVD  205 (207)
T ss_dssp             EEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEE-EEEEEEECC
T ss_pred             EEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCE-EEEEEEEec
Confidence            7899999988432        246999999999999999999999987 466665543

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.78  E-value=8.1e-09  Score=63.84  Aligned_cols=76  Identities=11%  Similarity=0.060  Sum_probs=59.1

Q ss_pred             eEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------e-----cceEEEEecCCCCcee
Q psy12134         46 NFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------D-----EGTVTAKVLQPFSERT  110 (139)
Q Consensus        46 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------~-----~~~l~i~~~~~~d~g~  110 (139)
                      ...+.+..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|  ++..+        .     ...|.|.++...|.|.
T Consensus        33 ~~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  112 (154)
T 1fhg_A           33 VAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK  112 (154)
T ss_dssp             -CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEE
T ss_pred             hhcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEE
Confidence            3445566788888777777888999999999999999999988  33321        1     2378999999999999


Q ss_pred             E--EEEcccCCCC
Q psy12134        111 L--SVQDKIGPGP  121 (139)
Q Consensus       111 y--~~~n~~g~~~  121 (139)
                      |  .+.|.+|...
T Consensus       113 Y~C~a~N~~G~~~  125 (154)
T 1fhg_A          113 YTCKAVNSLGEAT  125 (154)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             EEEEEEECCCeEE
Confidence            9  7889888744

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.77  E-value=2.1e-08  Score=57.40  Aligned_cols=50  Identities=14%  Similarity=0.091  Sum_probs=39.7

Q ss_pred             CeEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          1 MLVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         1 ~~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      .+.|+|++..+...          ...|.|.+++.+|+|.|+|.+    +. .+..+.|.|..+|
T Consensus        38 ~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~-~~~~~~l~V~~~P   97 (100)
T 2yuv_A           38 EVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GD-EKCSTELFVRSGP   97 (100)
T ss_dssp             CEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TT-EEEEEEEEECCSC
T ss_pred             eEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CC-ceEEEEEEEecCC
Confidence            37899998776332          136999999999999999999    34 5677888888876

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.77  E-value=1.9e-08  Score=62.50  Aligned_cols=51  Identities=14%  Similarity=0.217  Sum_probs=42.7

Q ss_pred             eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|++++..+..  ....|.|.+++.+|+|.|+|.+.|..|...+..+.|.|.
T Consensus       118 ~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          118 VTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             EEEEETTEEEEEESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEECCeEccccCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEEC
Confidence            789999988754  357899999999999999999999987656677777663

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=8.4e-09  Score=59.32  Aligned_cols=49  Identities=16%  Similarity=0.159  Sum_probs=39.3

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+...          ...|.|.+++.+|+|.|+|.+.|     .+..+.|.|..+|
T Consensus        39 v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p   97 (103)
T 2edf_A           39 VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA-----SKSTASLHVEEKA   97 (103)
T ss_dssp             CCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS-----CEEEEEEEECCCS
T ss_pred             EEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc-----CCcEEEEEEeCCC
Confidence            6899998766332          13699999999999999999998     2677888888766

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.76  E-value=3.5e-08  Score=64.71  Aligned_cols=73  Identities=14%  Similarity=0.175  Sum_probs=48.6

Q ss_pred             eEEEcccCCCCCEEEEEEEEcC---CCCceeeeEEEEEec---------CCeEEe-cCceEeeCCCCeEEEEEEeeeC-C
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNN---IGESTSKNFIVNVIY---------PPEVSV-EKQWIHTAPDMRAEIICNVYAN-P   82 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~---~~~~~s~~~~l~v~~---------~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p   82 (139)
                      .|.|.+++.+|+|.|.|.+.+.   ..........|.|..         +|.+.+ .+....+..|+.+.|.|.+.+. |
T Consensus        80 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P  159 (230)
T 1ypz_F           80 ILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFP  159 (230)
T ss_dssp             EEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESS
T ss_pred             EEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecC
Confidence            7999999999999999999874   111123445777762         232221 1222233458899999999986 6


Q ss_pred             C-cEEEEc
Q psy12134         83 P-AKRFDE   89 (139)
Q Consensus        83 ~-~~~~~~   89 (139)
                      . +.+.|.
T Consensus       160 ~~~~v~W~  167 (230)
T 1ypz_F          160 DVIRVYWK  167 (230)
T ss_dssp             CCCEEEEE
T ss_pred             CCeEEEEE
Confidence            4 477883

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.76  E-value=9.8e-08  Score=69.61  Aligned_cols=56  Identities=11%  Similarity=-0.041  Sum_probs=38.0

Q ss_pred             eeCCCCeEEEEEEeeeCCCc--EEEE--cCeeee------------c------ceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         65 HTAPDMRAEIICNVYANPPA--KRFD--EGTRFD------------E------GTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~--~~~~--~~~~~~------------~------~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      .+..|+.+.|.|.+.+.+|+  .+.|  ++....            +      ..|.|.....+|.|.|  .+.|..+..
T Consensus       308 ~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~  387 (512)
T 1zvo_C          308 DLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP  387 (512)
T ss_pred             HhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence            34579999999999987543  5677  332211            1      2367777778899999  667776543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.75  E-value=1.9e-09  Score=62.62  Aligned_cols=50  Identities=14%  Similarity=0.274  Sum_probs=40.6

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++..+...          ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|.
T Consensus        46 v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~  105 (106)
T 1nct_A           46 VTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK-QEAEFTLTIQ  105 (106)
T ss_dssp             CCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCB-CCEEEEEEEC
T ss_pred             EEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCe-EEEEEEEEEE
Confidence            6799988665321          368999999999999999999999988 5777777764

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=1.3e-08  Score=59.81  Aligned_cols=74  Identities=11%  Similarity=-0.010  Sum_probs=55.2

Q ss_pred             eEEEEEecCC-eEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCce
Q psy12134         46 NFIVNVIYPP-EVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSER  109 (139)
Q Consensus        46 ~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g  109 (139)
                      .+.|.|..+| .+...+....+.+|+++.|.|.+.+.|.+.+.|  ++..+             ....|.|.++..+|.|
T Consensus         4 ~a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   83 (115)
T 2cr6_A            4 GSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSG   83 (115)
T ss_dssp             CCCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCE
T ss_pred             cEEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCE
Confidence            4456677665 556667778889999999999999999888877  33321             1136999999999999


Q ss_pred             eEEEEcccCCCC
Q psy12134        110 TLSVQDKIGPGP  121 (139)
Q Consensus       110 ~y~~~n~~g~~~  121 (139)
                      .|.|.  +|...
T Consensus        84 ~Y~C~--~g~~~   93 (115)
T 2cr6_A           84 TIYFE--AGDQR   93 (115)
T ss_dssp             EEEEE--ETTEE
T ss_pred             EEEEE--ECCee
Confidence            99776  44433

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.75  E-value=3e-08  Score=57.82  Aligned_cols=52  Identities=12%  Similarity=0.137  Sum_probs=41.8

Q ss_pred             eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCCC--ceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~--~~s~~~~l~v~~   53 (139)
                      +.|+|++..+..  ....|.|.+++.+|+|.|+|.+.+..+.  ..++.+.|.|..
T Consensus        44 ~~w~k~g~~l~~~~~~~~l~i~~v~~~dsG~Y~C~~~~~~~~~~~~S~~l~L~V~g   99 (108)
T 4hwn_A           44 FSFYKDGRIVQSRGLSSEFQIPTASEDHSGSYWCEAATEDNQVWKQSPQLEIRVQG   99 (108)
T ss_dssp             EEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEECTTSSSEEECCCEEECCBC
T ss_pred             EEEEECCcCccCCCcccEEEeCccCcccCeEEEEEEEeCCCceeccCCCEEEEEEe
Confidence            789999987753  4678999999999999999999987542  246777777764

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.75  E-value=5.8e-10  Score=66.33  Aligned_cols=77  Identities=17%  Similarity=0.192  Sum_probs=60.6

Q ss_pred             eeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcE-EEE--cCeeee------------------cceEEEEe
Q psy12134         44 SKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-RFD--EGTRFD------------------EGTVTAKV  102 (139)
Q Consensus        44 s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~--~~~~~~------------------~~~l~i~~  102 (139)
                      +..+.|.|.++|.+.. +....+..|+.+.|.|.+.+.|+|. +.|  ++..+.                  ...|.|.+
T Consensus         4 ~~~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~   82 (122)
T 2cry_A            4 GSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISN   82 (122)
T ss_dssp             SCCCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             ceEEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcC
Confidence            5667888999998877 5666778999999999999999886 778  322210                  12688888


Q ss_pred             cCCCCc-eeE--EEEcccCCCC
Q psy12134        103 LQPFSE-RTL--SVQDKIGPGP  121 (139)
Q Consensus       103 ~~~~d~-g~y--~~~n~~g~~~  121 (139)
                      +..+|. |.|  .|.|.+|...
T Consensus        83 v~~~D~~G~Y~C~a~N~~G~~~  104 (122)
T 2cry_A           83 IVRADFQTIYNCTAWNSFGSDT  104 (122)
T ss_dssp             CCHHHHHSCEEEEEECSSCEEE
T ss_pred             CChhhCCceEEEEEECCCCeEE
Confidence            888998 999  8899998766

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.75  E-value=3.2e-08  Score=63.47  Aligned_cols=52  Identities=19%  Similarity=0.340  Sum_probs=43.3

Q ss_pred             eEEEECCEEeeecC-----------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134          2 LVIFFSKIELLYNR-----------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~~~~~~~~-----------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      +.|++++.++....           ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+
T Consensus       149 v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~P  211 (212)
T 2r15_A          149 VSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFIP  211 (212)
T ss_dssp             EEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred             EEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCc-EEEEEEEEEEcc
Confidence            78999998875432           38999999999999999999999987 577888887643

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=4.1e-09  Score=60.51  Aligned_cols=49  Identities=18%  Similarity=0.125  Sum_probs=37.1

Q ss_pred             eEEEECCEEeeecC--------------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYNR--------------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++.++....              ..|.|.+++.+|+|.|+|.+.|.     +..+.|.|..+|
T Consensus        39 v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-----~~~~~l~V~~~P  101 (101)
T 2edk_A           39 VMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG-----QCEAELIVEEKQ  101 (101)
T ss_dssp             CEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSSC-----EECCBEEEECCC
T ss_pred             EEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcCC-----cEEEEEEEeCCC
Confidence            78999987654321              35999999999999999999872     455567776554

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.74  E-value=1.7e-08  Score=65.32  Aligned_cols=41  Identities=32%  Similarity=0.417  Sum_probs=34.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV   57 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~   57 (139)
                      +.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|.+
T Consensus       171 ~~L~I~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          171 STLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEC----
T ss_pred             EEEEECCCCcccCEEEEEEEecCCCc-EEEEEEEEEeccccc
Confidence            35999999999999999999999988 588999999988765

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=98.74  E-value=2.7e-07  Score=58.90  Aligned_cols=102  Identities=14%  Similarity=0.159  Sum_probs=68.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE-EecCceEeeCCCCeEEEEEEeeeCCCc---EEEE--c
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHTAPDMRAEIICNVYANPPA---KRFD--E   89 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~~--~   89 (139)
                      ..|.|.+++. | |.|.|.+... +...+..+.|.|..+|.- .+.+....+.+|+.++|.|.+.+..|+   .+.|  +
T Consensus        50 ~~l~l~~vs~-~-g~y~C~~~c~-~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg  126 (185)
T 1iam_A           50 KVYELSNVQE-D-SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRG  126 (185)
T ss_dssp             EEEEEEEECS-C-BCCEEEEECS-SCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEET
T ss_pred             eEEEEEecCc-C-CEEEEEEECC-CCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeC
Confidence            5689999983 4 9999998654 445789999999987754 455444347789999999999986554   2456  2


Q ss_pred             Ceeee---------cceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         90 GTRFD---------EGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        90 ~~~~~---------~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      +..+.         ...+.+.....++...|  .|.|.++..
T Consensus       127 ~~~l~~~~~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~~~  168 (185)
T 1iam_A          127 EKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ  168 (185)
T ss_dssp             TEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGG
T ss_pred             CEEcccccCCCccccEEEEEeceeccCCCeEEEEEEecCccc
Confidence            22221         12445444444444488  788887733

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.73  E-value=1.6e-07  Score=71.07  Aligned_cols=123  Identities=17%  Similarity=0.089  Sum_probs=82.7

Q ss_pred             eE-EE--ECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCC
Q psy12134          2 LV-IF--FSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP   68 (139)
Q Consensus         2 ~~-W~--~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~   68 (139)
                      +. |+  +++..+...          .+.|.|.++...|+|.|+|.|.|..|...+..+.|.|..+|.....+....+ .
T Consensus       196 i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~-~  274 (731)
T 2v5y_A          196 DRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASV-G  274 (731)
T ss_dssp             CEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEE-C
T ss_pred             eeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceecc-C
Confidence            45 88  666655321          2589999999999999999999999875577788999887765433333332 3


Q ss_pred             CCeEEEEEEeeeC----CCcE--EEEc-----Cee---eecceEEEEecCCCCceeE--EEE--cccCCCCCCCC
Q psy12134         69 DMRAEIICNVYAN----PPAK--RFDE-----GTR---FDEGTVTAKVLQPFSERTL--SVQ--DKIGPGPDSNL  125 (139)
Q Consensus        69 g~~~~l~C~~~~~----p~~~--~~~~-----~~~---~~~~~l~i~~~~~~d~g~y--~~~--n~~g~~~~~~~  125 (139)
                      ...+.+.|.....    |...  +.|.     +..   .....+.+..+...+.+.|  .|.  |..|.+..|..
T Consensus       275 ~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~  349 (731)
T 2v5y_A          275 ATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPA  349 (731)
T ss_dssp             SSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCC
T ss_pred             CceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCc
Confidence            5678888875321    2111  2231     111   1335778888888888888  677  99999886654

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=2.3e-08  Score=58.89  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=54.2

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee----------eecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR----------FDEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      +|.+...+....+..|+++.|.|.+.+.|.+.+.|  ++..          ...+.|.|..+..+|.|.|  .+.|..|.
T Consensus         8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   87 (118)
T 2eo9_A            8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGE   87 (118)
T ss_dssp             SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCE
T ss_pred             CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCc
Confidence            56666566667788999999999999999999988  3322          2356899999999999999  78888887


Q ss_pred             CC
Q psy12134        120 GP  121 (139)
Q Consensus       120 ~~  121 (139)
                      ..
T Consensus        88 ~~   89 (118)
T 2eo9_A           88 AT   89 (118)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=5.3e-09  Score=60.60  Aligned_cols=49  Identities=8%  Similarity=-0.128  Sum_probs=38.9

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|+|.++...          ...|.|.+++.+|+|.|+|.+.|     ....+.|.|..+|
T Consensus        41 v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~-----~~~~a~L~V~~~p   99 (104)
T 2eny_A           41 AMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG-----LTSKASLIVRERS   99 (104)
T ss_dssp             BCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT-----EEEEECEEEECCC
T ss_pred             eEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC-----eeEEEEEEEeCCC
Confidence            6799998776432          13799999999999999999854     3577888888766

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=3.3e-08  Score=56.69  Aligned_cols=49  Identities=18%  Similarity=0.194  Sum_probs=38.7

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+...          ...|.|.+++.+|+|.|+|.+.|     ....+.|.|..+|
T Consensus        42 v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~-----~~~~~~l~V~~p~  100 (102)
T 2eo1_A           42 VTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG-----QQLSFRLQVAGQC  100 (102)
T ss_dssp             CEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETT-----EECCEEEEEESCC
T ss_pred             eEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC-----CcEEEEEEEeCCC
Confidence            7899999876432          15799999999999999999954     3566788887665

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.71  E-value=3.4e-08  Score=58.79  Aligned_cols=40  Identities=25%  Similarity=0.394  Sum_probs=33.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV   57 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~   57 (139)
                      ..|.|.+++.+|+|.|+|.+.|. +. ....+.|.|..+|..
T Consensus        66 ~~L~I~~v~~~DsG~Y~C~a~n~-g~-~~~~~~l~V~~~P~~  105 (124)
T 3rbg_A           66 LSITVPNVTLQDEGVYKCLHYSD-SV-STKEVKVIVLATMKG  105 (124)
T ss_dssp             EEEEESSCCGGGCEEEEEEEESS-SE-EEEEEEEEEECC---
T ss_pred             EEEEECCCChHHCEEEEEEEEcC-CC-CcEEEEEEEEeCCCC
Confidence            68999999999999999999998 65 688899999887753

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.70  E-value=5.4e-08  Score=56.82  Aligned_cols=50  Identities=18%  Similarity=0.263  Sum_probs=40.0

Q ss_pred             eEEEECCEEeeec-------C---CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLYN-------R---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|+|++.++...       +   ..|.|.+++.+|+|.|+|.+    +. .+..+.|.|..+|.
T Consensus        49 v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~-~~~~~~l~V~~~p~  108 (113)
T 2edh_A           49 VEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GK-ERTSAMLTVRAMPS  108 (113)
T ss_dssp             CEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE----TT-EEEEEEEEECCCCC
T ss_pred             EEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe----CC-CCEEEEEEEeCCCC
Confidence            6899998776421       2   37999999999999999999    33 57788899987764

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.70  E-value=6.9e-08  Score=55.72  Aligned_cols=69  Identities=10%  Similarity=0.173  Sum_probs=52.6

Q ss_pred             ecCCeEEecCceEeeCCCCeEEEEEEeeeCC--CcEEEE--cCeee--------------------ecceEEEEecCCCC
Q psy12134         52 IYPPEVSVEKQWIHTAPDMRAEIICNVYANP--PAKRFD--EGTRF--------------------DEGTVTAKVLQPFS  107 (139)
Q Consensus        52 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~~--~~~~~--------------------~~~~l~i~~~~~~d  107 (139)
                      ..+|.+...+....+..|+++.|.|.+.+.|  ++.+.|  ++...                    ....|.|..+..+|
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS   87 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence            4567777777777888999999999999654  567777  33221                    02579999999999


Q ss_pred             ceeE--EEEcccCCC
Q psy12134        108 ERTL--SVQDKIGPG  120 (139)
Q Consensus       108 ~g~y--~~~n~~g~~  120 (139)
                      .|.|  .+.|..|..
T Consensus        88 ~G~Y~C~a~n~~g~~  102 (112)
T 3so5_A           88 EGXYQCVISNHFGSS  102 (112)
T ss_dssp             CEEEEEEEEETTEEE
T ss_pred             CCeEEEEEEeCCCcE
Confidence            9999  788888863

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.69  E-value=3.4e-08  Score=63.62  Aligned_cols=54  Identities=19%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|++++..+..       .++.|.|.+++.+|+|.|+|.+.|..|...+..+.|.|...+
T Consensus       142 i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          142 IYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             EEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence            789999988753       246899999999999999999999998854455888888643

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.69  E-value=1.4e-08  Score=64.52  Aligned_cols=41  Identities=12%  Similarity=0.203  Sum_probs=35.5

Q ss_pred             CeEEEECCEEeee---cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134          1 MLVIFFSKIELLY---NRESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus         1 ~~~W~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      .++|+|+|.++..   ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus       135 ~i~W~k~g~~i~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          135 TIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSN  178 (186)
T ss_dssp             CEEEEETTEECCCSSCCSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred             eEEEEECCEECcccCCCcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence            3789999998753   4578999999999999999999998765

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.69  E-value=4e-08  Score=63.70  Aligned_cols=56  Identities=18%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             eEEEECCEEeeec-CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE
Q psy12134          2 LVIFFSKIELLYN-RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV   57 (139)
Q Consensus         2 ~~W~~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~   57 (139)
                      +.|++++..+... ...|.|.+++.+|+|.|+|.+.|..|...+..+.|.|...+.+
T Consensus       150 v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~~  206 (218)
T 3k0w_A          150 YQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL  206 (218)
T ss_dssp             EEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC----
T ss_pred             EEEEECCEECCCCCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCccC
Confidence            7899999887553 5689999999999999999999988876788888888765444

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.69  E-value=4.9e-08  Score=57.32  Aligned_cols=54  Identities=22%  Similarity=0.287  Sum_probs=39.6

Q ss_pred             eEEEECCEEeeec------------CCeEEEc-----ccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN------------RESLDLD-----RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~-----~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ++|+|++..+...            ++.+.+.     +++.+|+|.|+|.+.|..|...+..+.|.+.++.
T Consensus        41 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~~~~~  111 (117)
T 2v9t_A           41 IEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA  111 (117)
T ss_dssp             EEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEECCCEEEEEC---
T ss_pred             EEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEeeeEEEEhhhhh
Confidence            7899999876532            2334443     4578999999999999999877788888887643

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.68  E-value=2.4e-08  Score=63.94  Aligned_cols=52  Identities=13%  Similarity=0.280  Sum_probs=41.6

Q ss_pred             eEEEECC--EEee------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134          2 LVIFFSK--IELL------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~--~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      +.|++++  ..+.      ..++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+
T Consensus       154 v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~P  213 (214)
T 3jz7_A          154 FEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGS-DQCMLRLDVVPP  213 (214)
T ss_dssp             EEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEECCBCC
T ss_pred             EEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCc-EEEEEEEEEeCC
Confidence            7899954  3332      12579999999999999999999999988 478888888754

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.67  E-value=2e-08  Score=58.29  Aligned_cols=68  Identities=13%  Similarity=0.154  Sum_probs=53.6

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      ..|.+...+....+..|+++.|.|.+.+.|.+.+.|  ++..+            ....|.|.++..+|.|.|  .+.|.
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   92 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENS   92 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCS
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeC
Confidence            456677777778889999999999999999998888  32221            135799999999999999  66787


Q ss_pred             cCCC
Q psy12134        117 IGPG  120 (139)
Q Consensus       117 ~g~~  120 (139)
                      .|..
T Consensus        93 ~G~~   96 (106)
T 1nct_A           93 EGKQ   96 (106)
T ss_dssp             SCBC
T ss_pred             CCeE
Confidence            7763

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.67  E-value=2.2e-08  Score=58.06  Aligned_cols=53  Identities=13%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCC---CCceeeeEEEEEecC
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNI---GESTSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~---~~~~s~~~~l~v~~~   54 (139)
                      +.|+|++..+..       ....|.|.+++.+|+|.|.|.+.|..   ....++.+.|.|.+.
T Consensus        35 ~~w~k~g~~~~~~~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~~~~~s~~Sdpl~L~V~~~   97 (105)
T 2vsd_A           35 VQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSEPLWTSNQSDPVELVLTIE   97 (105)
T ss_dssp             EEEEETTEEEEEEEECTTCSEEEEEEECCSGGGCEEEEEEEEEETTEEECCCCCCEEECCC--
T ss_pred             EEEEECCccceeeeccCCCCEEEEEECCCCHHHCeEEEEEEEcCCCCcccCCCCCEEEEEEEe
Confidence            579999876532       23679999999999999999999853   233577888888653

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.66  E-value=6.9e-08  Score=55.67  Aligned_cols=55  Identities=15%  Similarity=0.120  Sum_probs=44.1

Q ss_pred             CCCCeEEEEEEeeeCCCcEEEE--cCeee-----------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         67 APDMRAEIICNVYANPPAKRFD--EGTRF-----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..++.+.+.|.+.|.|.|.+.|  ++..+                 ..+.|.|.++..+|.|.|  .|.|.+|...
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   89 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE   89 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEe
Confidence            4578999999999999999988  43321                 112399999999999999  8899988765

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.66  E-value=2.9e-08  Score=57.37  Aligned_cols=48  Identities=17%  Similarity=0.135  Sum_probs=36.8

Q ss_pred             eEEEECCEEeeec--------C--CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN--------R--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~--~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++..+...        +  ..|.|.+++.+|+|.|+|.+.|..   .+..+.|.|.
T Consensus        39 v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~---~~~~~~l~V~   96 (106)
T 2dlt_A           39 GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYA---LSLSAKLNFL   96 (106)
T ss_dssp             EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETSC---CCCCBCEEEE
T ss_pred             eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccCC---ceEEEEEEEE
Confidence            6899998776432        1  479999999999999999999982   3455556655

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.65  E-value=1.9e-08  Score=64.91  Aligned_cols=50  Identities=14%  Similarity=0.266  Sum_probs=40.8

Q ss_pred             eEEEECCEEeee---------cCCeEEEccc-CCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRV-TLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v-~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|++..+..         ..+.|.|.++ +.+|+|.|+|.|.|..|...+..+.|.|
T Consensus       143 i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          143 ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             EEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             eEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            789999988643         3578999999 9999999999999999864456666554

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.65  E-value=7.9e-08  Score=60.44  Aligned_cols=50  Identities=24%  Similarity=0.331  Sum_probs=41.4

Q ss_pred             eEEEECCEEeeec--------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN--------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|++++..+...        ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|.
T Consensus       130 v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~  187 (189)
T 2v5t_A          130 ISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVF  187 (189)
T ss_dssp             EEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCc-eeEEEEEEEE
Confidence            6899999876532        467999999999999999999999887 4667777664

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.64  E-value=1e-07  Score=53.93  Aligned_cols=46  Identities=24%  Similarity=0.284  Sum_probs=35.5

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++..+...          ...|.|.+++.+|+|.|+|.+    +. .+..+.|.|.
T Consensus        39 v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~-~~~~~~l~V~   94 (95)
T 2k1m_A           39 VRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GS-SKVKFDLKVI   94 (95)
T ss_dssp             CEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TT-EEEEEEEEEE
T ss_pred             EEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CC-ceEEEEEEEe
Confidence            7899999876432          146999999999999999999    33 3556777664

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=6.4e-08  Score=56.82  Aligned_cols=53  Identities=26%  Similarity=0.279  Sum_probs=41.7

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEe
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV   59 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~   59 (139)
                      +.|+|++..+...           ...|.|.+++.+|+|.|+|.+    |. ....+.|.|..+|.+..
T Consensus        45 v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~-~~~~~~L~V~~~p~~~~  108 (115)
T 2cr6_A           45 VHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GD-QRASAALRVTEKPSVFS  108 (115)
T ss_dssp             CEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----TT-EECCEEEEEECCSSCCS
T ss_pred             cEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----CC-eeEEEEEEEECCCceec
Confidence            7899999876432           147999999999999999994    33 46778999998886543

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.62  E-value=2.2e-07  Score=54.84  Aligned_cols=42  Identities=21%  Similarity=0.313  Sum_probs=32.9

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEc-CCCCceeeeEEEEEecCCeE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVIYPPEV   57 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n-~~~~~~s~~~~l~v~~~p~~   57 (139)
                      +..|.|.+++.+|+|.|.|.+.+ +.|. .+..+.|.|..+|.+
T Consensus        70 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~-~~~~~~L~V~~pp~~  112 (117)
T 3q0h_A           70 GLGLTLQSLTVNDTGEYFCIYHTYPDGT-YTGRIFLEVLESSVA  112 (117)
T ss_dssp             TTCEEECSCCGGGCEEEEEEEEEETTCC-EEEEEEEEEECC---
T ss_pred             ceEEEEeeCChhhCEEEEEEEEECCCCC-eEEEEEEEEEccCcc
Confidence            36799999999999999999764 4555 578899999988854

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.62  E-value=5.9e-08  Score=67.28  Aligned_cols=53  Identities=25%  Similarity=0.320  Sum_probs=44.2

Q ss_pred             eEEEECCEEeeec-----------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN-----------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ++|+++|..+...                 .+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|
T Consensus       278 i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~P  347 (347)
T 2ifg_A          278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP  347 (347)
T ss_dssp             EEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEECSCCCC
T ss_pred             EEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCc-eeeEEEEEecCCC
Confidence            7899999876532                 234999999999999999999999987 5888888887765

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=4.7e-08  Score=55.47  Aligned_cols=67  Identities=16%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|  ++..+   ....|.|.++..+|.|.|  .+.|..|..
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~   83 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGP   83 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEECCSSCCC
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEEeCCCCc
Confidence            34455555555678999999999999999888877  44332   456899999999999999  777765543

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.61  E-value=1.1e-07  Score=60.59  Aligned_cols=51  Identities=14%  Similarity=0.137  Sum_probs=36.3

Q ss_pred             eEEEECCEEeee------------cCCeEEEcccCCCCCEEEEEEEEcCCCCc----eeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY------------NRESLDLDRVTLKLAGLYQCIASNNIGES----TSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~----~s~~~~l~v~   52 (139)
                      +.|+|++..+..            ....|.|.+++.+|+|.|+|.|.|..+..    .++.+.|.|.
T Consensus       131 v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          131 FILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             EEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            789999876521            12689999999999999999999986532    3677777764

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.61  E-value=1.3e-08  Score=66.05  Aligned_cols=73  Identities=12%  Similarity=0.064  Sum_probs=49.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEE-EEEecCCeEEecC-ceEeeCCCCeEEEEEEeeeCCC--cEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFI-VNVIYPPEVSVEK-QWIHTAPDMRAEIICNVYANPP--AKRFD   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~-l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~p~--~~~~~   88 (139)
                      ..|.|.++..+|+|.|.|.+.|..+.. ....+. +.+..+|.+.+.. ....+..|+.+.|.|.+.+.+|  +.+.|
T Consensus        66 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W  143 (214)
T 1ow0_A           66 SVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRW  143 (214)
T ss_dssp             EECTTTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEE
T ss_pred             EEEEEeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEE
Confidence            357788888899999999999876542 122222 1345677775433 2223567899999999998643  36778

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.61  E-value=7.6e-08  Score=61.03  Aligned_cols=50  Identities=18%  Similarity=0.187  Sum_probs=42.0

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|++++..+..      ....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|.
T Consensus       145 v~W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~  200 (201)
T 3s97_C          145 IRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGK-DKHQARIYVQ  200 (201)
T ss_dssp             EEEEETTBCCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             eEEEeCCCcCCCceeecCCCCEEEEccCChhhCEEEEEEEEecCCc-eeeeEEEEEe
Confidence            789999886542      4578999999999999999999999887 4777777775

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.60  E-value=6.5e-09  Score=61.71  Aligned_cols=53  Identities=13%  Similarity=0.160  Sum_probs=42.3

Q ss_pred             eEEEECCEEeeec----------------CCeEEEcccCCCCC-EEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN----------------RESLDLDRVTLKLA-GLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------------~~~L~i~~v~~~d~-G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|++++..+...                .+.|.|.+++.+|. |.|+|.|.|..|. .+..+.|.|..++
T Consensus        46 i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~-~~~~~~l~V~~~~  115 (122)
T 2cry_A           46 IAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQGSE  115 (122)
T ss_dssp             EEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCE-EEEEECCCCSCSS
T ss_pred             eEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCe-EEEEEEEEECCCC
Confidence            7899998776421                13799999999999 9999999999988 4677777776543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.60  E-value=4.3e-08  Score=65.66  Aligned_cols=84  Identities=14%  Similarity=0.046  Sum_probs=41.1

Q ss_pred             eEEEECCEEeee-----------cCCeEEEcccCCCCCEEEEEEEEcCC----CCceeeeEEEEEecCCeEEec-CceEe
Q psy12134          2 LVIFFSKIELLY-----------NRESLDLDRVTLKLAGLYQCIASNNI----GESTSKNFIVNVIYPPEVSVE-KQWIH   65 (139)
Q Consensus         2 ~~W~~~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~~~n~~----~~~~s~~~~l~v~~~p~~~~~-~~~~~   65 (139)
                      +.|+|+|..+..           ....|.|.+++  |+|.|+|.+.+..    ....++.+.|.|.++|.+... +....
T Consensus       137 ~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~  214 (257)
T 1b6u_A          137 YHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPS  214 (257)
T ss_dssp             EEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-----------
T ss_pred             EEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccC
Confidence            689999876542           14689999998  9999999999752    223578899999998876522 21123


Q ss_pred             eCCCCeEEEEEEeeeCCCcEEEE
Q psy12134         66 TAPDMRAEIICNVYANPPAKRFD   88 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~p~~~~~~   88 (139)
                      ...|..+.|.|.+.. +.+.+.|
T Consensus       215 ~~~g~~~~l~~~~~~-~~~~~~~  236 (257)
T 1b6u_A          215 SETGNPRHLHAAAEQ-KLISEED  236 (257)
T ss_dssp             -----------------------
T ss_pred             ccCCCeEEEEEEEcc-hHHHHHH
Confidence            345888888876653 4444445

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=1.7e-07  Score=55.12  Aligned_cols=51  Identities=16%  Similarity=0.100  Sum_probs=39.4

Q ss_pred             eEEEECCEEeeecC--------------------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLYNR--------------------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~~~--------------------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|+|||.++....                    ..|+|.+++.+|+|.|+|...+.    ...++.|.|..+|.
T Consensus        38 v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~~~----~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           38 GTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPG----VQDSAALTIQESSG  108 (112)
T ss_dssp             CEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEETT----EEEEEEEEEECSSC
T ss_pred             EEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEECC----eeEEEEEEEeCCCc
Confidence            68999998774432                    26999999999999998754432    46788999998774

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.59  E-value=1.1e-07  Score=60.14  Aligned_cols=49  Identities=18%  Similarity=0.198  Sum_probs=40.1

Q ss_pred             eEEEECCEEeeecC----------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYNR----------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+....          ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus       135 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V  193 (194)
T 2a38_A          135 VKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR-ATSTAELLV  193 (194)
T ss_dssp             EEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             EEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCc-eEEEEEEEE
Confidence            68999998764321          27999999999999999999999987 466777766

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.59  E-value=1.7e-07  Score=60.37  Aligned_cols=50  Identities=26%  Similarity=0.282  Sum_probs=38.9

Q ss_pred             eEEEECCEEeee---------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY---------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+..               ..+.|.|.+++.+|+|.|+|.+.|..|...+....|.+
T Consensus       141 v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          141 LIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             EEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence            789999988761               23689999999999999999999999874333333333

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.58  E-value=8.5e-08  Score=54.63  Aligned_cols=60  Identities=13%  Similarity=0.176  Sum_probs=47.7

Q ss_pred             ceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         62 QWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ....+..|+.+.|.|.+.+.|.+.+.|  ++...             ....|.|..+..+|.|.|  .+.|..|...
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~   92 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN   92 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEE
Confidence            456778999999999999999999888  33321             123799999999999999  7888887643

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.58  E-value=1.2e-07  Score=60.63  Aligned_cols=52  Identities=27%  Similarity=0.280  Sum_probs=42.3

Q ss_pred             eEEEECCE-Eeee-----------------cCCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEec
Q psy12134          2 LVIFFSKI-ELLY-----------------NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~-~~~~-----------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~   53 (139)
                      +.|++++. .+..                 ..+.|.|.+++.+|+|.|+|.|.|..|.. .+..+.|.|..
T Consensus       137 i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          137 YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             EEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             EEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            78999998 5532                 24789999999999999999999999885 46777777764

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.58  E-value=1.3e-07  Score=60.83  Aligned_cols=55  Identities=13%  Similarity=0.130  Sum_probs=41.8

Q ss_pred             eEEEECCEEeeec--------------CCeEEEcccCCCCCEEEEEEEEcCCCCc------eeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLYN--------------RESLDLDRVTLKLAGLYQCIASNNIGES------TSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~------~s~~~~l~v~~~p~   56 (139)
                      ++|+|++.++...              ...|.|.....+|.|.|+|+|.|..+..      .+..+.|.|+++|.
T Consensus       126 i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          126 IDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             EEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             EEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            6899999876421              1335677777888999999999987652      46788999999884

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.58  E-value=3.6e-08  Score=62.96  Aligned_cols=51  Identities=24%  Similarity=0.323  Sum_probs=41.0

Q ss_pred             eEEEECCEEeee-----------------cCCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY-----------------NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~-----------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~   52 (139)
                      +.|++++..+..                 ..+.|.|.+++.+|+|.|+|.+.|..|.. .+..+.|.|.
T Consensus       140 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          140 YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             EEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             eEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            789999887643                 24689999999999999999999999885 4566666554

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.58  E-value=7.2e-08  Score=56.77  Aligned_cols=73  Identities=19%  Similarity=0.293  Sum_probs=51.7

Q ss_pred             EEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------------ecceEEEEecCCCCc
Q psy12134         47 FIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------------DEGTVTAKVLQPFSE  108 (139)
Q Consensus        47 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------------~~~~l~i~~~~~~d~  108 (139)
                      +.|.|.++|.+......   .......|.|.+.|.|.+.+.|  ++..+                ..+.|.|..+..+|.
T Consensus         1 v~L~V~~pP~i~~~~~~---~~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   77 (118)
T 1wwc_A            1 VALTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNN   77 (118)
T ss_dssp             ---CCCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGC
T ss_pred             CEEEEecCCceeccCCC---eeccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcC
Confidence            35778888876543221   2236778999999999999988  33321                234789999999999


Q ss_pred             eeE--EEEcccCCCCC
Q psy12134        109 RTL--SVQDKIGPGPD  122 (139)
Q Consensus       109 g~y--~~~n~~g~~~~  122 (139)
                      |.|  .|.|.+|....
T Consensus        78 G~Y~C~a~N~~G~~~~   93 (118)
T 1wwc_A           78 GNYTLIAKNPLGTANQ   93 (118)
T ss_dssp             EEEEEEEEETTEEEEE
T ss_pred             EEEEEEEECCCCeEee
Confidence            999  88999887654

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=98.58  E-value=2e-07  Score=66.04  Aligned_cols=72  Identities=21%  Similarity=0.156  Sum_probs=56.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEe-eCCCC-eEEEEEEeeeCC-C--cEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH-TAPDM-RAEIICNVYANP-P--AKRFD   88 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~-~~~g~-~~~l~C~~~~~p-~--~~~~~   88 (139)
                      ..|.|.+++.+|.|.|.|.+.+..+. ....+.|.|..+|.+...+.... +..|+ .+.|.|.+.+.. .  +.+.|
T Consensus       254 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW  330 (401)
T 3f8u_B          254 GTFWLPRVQPFQEGTYLATIHLPYLQ-GQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEW  330 (401)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEEE
T ss_pred             EEEEECcCCHhhCceEEEEEEecccc-eeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCCCCcEEEE
Confidence            56889999999999999999987655 46778899999998876544333 34676 799999999864 4  46778

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.57  E-value=3.8e-07  Score=51.64  Aligned_cols=64  Identities=11%  Similarity=0.145  Sum_probs=49.1

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeC-CCcEEEE--cCeee----------ecc--eEEEEecCCCCceeE--EEEcccCCC
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYAN-PPAKRFD--EGTRF----------DEG--TVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~--~~~~~----------~~~--~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      ...+....+..|+++.|.|.+.+. |.+.+.|  ++..+          ..+  .|.|..+..+|.|.|  .+.|..|..
T Consensus         5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~   84 (97)
T 2bk8_A            5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGED   84 (97)
T ss_dssp             ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeE
Confidence            344556677899999999999997 8888888  33221          222  789999999999999  788887765


Q ss_pred             C
Q psy12134        121 P  121 (139)
Q Consensus       121 ~  121 (139)
                      .
T Consensus        85 ~   85 (97)
T 2bk8_A           85 S   85 (97)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.55  E-value=8.7e-08  Score=54.26  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=50.7

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      +|.+...+....+..|+.+.|.|.+.+.| +.+.|  ++..        ...+.|.|..+..+|.|.|  .+.|..|..
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   86 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSD   86 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcE
Confidence            34454455667788999999999999987 67888  3322        2356899999999999999  778887764

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.55  E-value=1.2e-07  Score=62.17  Aligned_cols=31  Identities=19%  Similarity=0.261  Sum_probs=26.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeee
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKN   46 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~   46 (139)
                      ..|.|.+++.+|+|.|+|.|.|..|...+..
T Consensus       213 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~  243 (250)
T 2fbo_J          213 RNLVIRAAKITDAGRVWCELATGQGELDADR  243 (250)
T ss_dssp             TEEEECSCCGGGCEEEEEEEESSSSGGGEEE
T ss_pred             cEEEEecCCcccCEEEEEEecCCccccCccc
Confidence            6899999999999999999999776543333

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.54  E-value=4.6e-07  Score=51.38  Aligned_cols=61  Identities=15%  Similarity=0.152  Sum_probs=47.7

Q ss_pred             CceEeeCCCCeEEEEEEee-eCCCcEEEEcC--ee-------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         61 KQWIHTAPDMRAEIICNVY-ANPPAKRFDEG--TR-------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~-~~p~~~~~~~~--~~-------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +....+..|+++.|.|.+. +.|.+.+.|..  ..       ...+.|.|.++..+|.|.|  .+.|..|...
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   89 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQ   89 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCCccc
Confidence            3455778999999999998 58888888822  11       2356899999999999999  7788877643

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=2e-07  Score=53.38  Aligned_cols=49  Identities=16%  Similarity=0.133  Sum_probs=38.1

Q ss_pred             eEEEECCEEeeec-------CC---eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN-------RE---SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~~---~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+...       +.   .|.|.+++.+|+|.|+|.    .+. .+..+.|.|...|
T Consensus        39 v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~-~~~~~~l~V~~~p   97 (103)
T 2dku_A           39 VTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQ-AQSRAQLLVQGRR   97 (103)
T ss_dssp             CEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----CSS-CBCCEEEEEECSC
T ss_pred             EEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----eCC-ceEEEEEEEeCcc
Confidence            7899998776432       22   799999999999999998    344 4667888888765

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.54  E-value=2.8e-07  Score=53.26  Aligned_cols=46  Identities=15%  Similarity=0.196  Sum_probs=34.8

Q ss_pred             eEEEECCEEeeec--------CC---eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN--------RE---SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~---~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++.++...        ++   .|.|.+++.+|+|.|+|.+.+     ....+.|.|.
T Consensus        47 v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~-----~~~~~~l~V~  103 (104)
T 1pd6_A           47 VKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG-----EKCSTELFVK  103 (104)
T ss_dssp             CEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT-----EEECCEEEEE
T ss_pred             EEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEECC-----CcEEEEEEEe
Confidence            6899999877543        13   899999999999999999943     3445555553

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.53  E-value=3e-07  Score=59.37  Aligned_cols=98  Identities=19%  Similarity=0.170  Sum_probs=57.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC---------C-ceeeeEEEEEec------CCeEEecCceEeeCCCCeEEEEEEee
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG---------E-STSKNFIVNVIY------PPEVSVEKQWIHTAPDMRAEIICNVY   79 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~---------~-~~s~~~~l~v~~------~p~~~~~~~~~~~~~g~~~~l~C~~~   79 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+         . .......|.|..      +|.+...        +..+.|.|.+.
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~--------~~~~~l~C~~~  142 (207)
T 1ypz_E           71 STLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIM--------KNGTNVACLVK  142 (207)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEE--------EETTEEEEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEEe--------CCCCeEEEEEe
Confidence            4799999999999999999988632         1 012345677764      2322221        11368999998


Q ss_pred             eCCC--cEEEEcC-eee----------ecceEEEEecCC-CCceeE--EEEcccCCCC
Q psy12134         80 ANPP--AKRFDEG-TRF----------DEGTVTAKVLQP-FSERTL--SVQDKIGPGP  121 (139)
Q Consensus        80 ~~p~--~~~~~~~-~~~----------~~~~l~i~~~~~-~d~g~y--~~~n~~g~~~  121 (139)
                      +.+|  +.+.|.. ..+          .++.+.+..... .+.|.|  .+.|..+...
T Consensus       143 g~~P~~~~v~W~~~~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~~  200 (207)
T 1ypz_E          143 DFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETVH  200 (207)
T ss_dssp             EESSSCCEEEEECSSEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEEEE
T ss_pred             eEeCCCeEEEEecCCcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCccEe
Confidence            7644  5778833 221          123344433333 456667  5566554433

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=1.2e-07  Score=54.41  Aligned_cols=76  Identities=7%  Similarity=-0.025  Sum_probs=51.7

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------e---cceEEEEecCCCCceeE--EEEccc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------D---EGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~---~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      +|.+...+....+.+|+.+.|.|.+  .|.+.+.|  ++..+         .   ...|.|.++..+|.|.|  .|.|. 
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~-   83 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY-   83 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS-
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC-
Confidence            4455555666788899999999999  77777877  44332         1   13689999999999999  55554 


Q ss_pred             CCCCCCCCcceeeeeCCCC
Q psy12134        118 GPGPDSNLRPSAYMADAPP  136 (139)
Q Consensus       118 g~~~~~~~~~~~~~~~~~~  136 (139)
                          .......+.+.++|.
T Consensus        84 ----~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           84 ----NVTLPAKVHVISGPS   98 (100)
T ss_dssp             ----CCCEEEEEEEECCSC
T ss_pred             ----CeeEEEEEEEeCCCC
Confidence                223334444455553

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.53  E-value=1.2e-07  Score=55.07  Aligned_cols=67  Identities=9%  Similarity=-0.219  Sum_probs=49.8

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCC---cEEEE--cCe---------e--e----------ecceEEEEecCCCCc
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPP---AKRFD--EGT---------R--F----------DEGTVTAKVLQPFSE  108 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~~~~--~~~---------~--~----------~~~~l~i~~~~~~d~  108 (139)
                      |.+...+....+..|+++.|.|.+.+.|.   +.+.|  ++.         .  .          ....|.|.++..+|.
T Consensus         5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (108)
T 3cx2_A            5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (108)
T ss_dssp             CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGC
T ss_pred             cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccC
Confidence            44445556677889999999999999987   88888  220         0  0          135799999999999


Q ss_pred             eeE--EEEcccCCCC
Q psy12134        109 RTL--SVQDKIGPGP  121 (139)
Q Consensus       109 g~y--~~~n~~g~~~  121 (139)
                      |.|  .+.|..|...
T Consensus        85 G~Y~C~a~N~~G~~~   99 (108)
T 3cx2_A           85 GSYRCEVSTKDKFDC   99 (108)
T ss_dssp             EEEEEEEECSSCEEE
T ss_pred             EEEEEEEecCCCceE
Confidence            999  7888887654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.52  E-value=1.3e-07  Score=60.35  Aligned_cols=49  Identities=6%  Similarity=-0.113  Sum_probs=37.3

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ++|++++..+...           .+.|.|..+..+|+|.|+|.|.|+.|.. +..+.+.|
T Consensus       150 i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~-~~~~t~~v  209 (218)
T 4frw_A          150 VTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ-DQRITHIL  209 (218)
T ss_dssp             EEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSS-CEEEEEEC
T ss_pred             EEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe-EEEEEEEE
Confidence            7899998765432           2579999999999999999999998763 44444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.52  E-value=2.2e-07  Score=66.43  Aligned_cols=53  Identities=23%  Similarity=0.419  Sum_probs=41.0

Q ss_pred             eEEEECCEEeee-----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY-----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+++++.+..           .++.|.|.+++.+|+|.|+|.|.|..|. .+..+.+.|.++|
T Consensus       372 i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~~~v~~~~  435 (440)
T 3zyj_A          372 VSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGN-TTASATLNVTGTH  435 (440)
T ss_dssp             EEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEECSSCE-EEEEEEEEEC---
T ss_pred             eEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEEcCCCc-EEEEEEEEEeccc
Confidence            689995543321           2478999999999999999999999998 5888888887755

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.52  E-value=9.6e-08  Score=63.46  Aligned_cols=54  Identities=17%  Similarity=0.197  Sum_probs=33.1

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe-cCCeEEecCceEeeCCC
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-YPPEVSVEKQWIHTAPD   69 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~-~~p~~~~~~~~~~~~~g   69 (139)
                      ...|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|. .+|.+...+....+..+
T Consensus       200 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~p~~~~~p~~~~~~~~  254 (268)
T 3mj6_A          200 DGSIKLQTVKESDQGIYTCSIYVGKLE-SRKTIVLHVVQDEFQRTISPTPPTDKGQ  254 (268)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC----------------
T ss_pred             eEEEEECcCChhhCeEEEEEEEcCCce-EEEEEEEEEEcCCCeeeeCCCCCCCCcc
Confidence            468999999999999999999998776 5788888884 44545554444333333

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.51  E-value=1.9e-07  Score=53.99  Aligned_cols=49  Identities=16%  Similarity=0.188  Sum_probs=37.9

Q ss_pred             eEEEECCEEeeec-------C---CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN-------R---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+...       +   ..|.|.+++.+|+|.|+|.+.|     .+..+.|.|..+|
T Consensus        38 v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p   96 (108)
T 2dm7_A           38 VEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ-----ERTSATLTVRALP   96 (108)
T ss_dssp             CEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT-----EEEEEECEEECCC
T ss_pred             eEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC-----CEEEEEEEEecCC
Confidence            6899998765421       1   3499999999999999999954     3677788888755

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.51  E-value=1.5e-07  Score=61.43  Aligned_cols=42  Identities=33%  Similarity=0.438  Sum_probs=32.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS   58 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~   58 (139)
                      ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|...
T Consensus       182 ~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          182 VRLRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAE  223 (241)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEC-------
T ss_pred             eEEEECcCCcccCcEEEEEEecCcce-EEEEEEEEecCCCCCC
Confidence            46999999999999999999999988 5888999998877543

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.50  E-value=4e-07  Score=52.13  Aligned_cols=76  Identities=13%  Similarity=0.155  Sum_probs=52.0

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------ecc---eEEEEecCCCCceeEEEEcccCC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------DEG---TVTAKVLQPFSERTLSVQDKIGP  119 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~~~---~l~i~~~~~~d~g~y~~~n~~g~  119 (139)
                      +|.+...+....+.+|+++.|.|.+.+.|.+ +.|  ++..+         ..+   .|.|.++..+|.|.|.|.  .|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--~g~   84 (103)
T 2e7b_A            8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS--FGD   84 (103)
T ss_dssp             CCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE--CSS
T ss_pred             CCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE--ECC
Confidence            4555555566778899999999999999888 777  33221         122   599999999999999776  444


Q ss_pred             CCCCCCcceeeeeCCC
Q psy12134        120 GPDSNLRPSAYMADAP  135 (139)
Q Consensus       120 ~~~~~~~~~~~~~~~~  135 (139)
                      ..   ....+.+...|
T Consensus        85 ~~---~~~~l~V~~~p   97 (103)
T 2e7b_A           85 QT---TSATLTVTALP   97 (103)
T ss_dssp             CB---CCBCEEEECCC
T ss_pred             cE---EEEEEEEEecc
Confidence            33   23344444444

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=98.50  E-value=3.5e-07  Score=61.35  Aligned_cols=99  Identities=18%  Similarity=0.155  Sum_probs=59.4

Q ss_pred             eEEEcccCCCCCEEEEEEEEcC------CC--------------C----ceeeeEEEEEe----cCCeEEecCceEeeCC
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNN------IG--------------E----STSKNFIVNVI----YPPEVSVEKQWIHTAP   68 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~------~~--------------~----~~s~~~~l~v~----~~p~~~~~~~~~~~~~   68 (139)
                      .|.|.+++.+|+|.|.|.+.+.      .+              .    .......|.|.    .+|.+...........
T Consensus       103 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~  182 (267)
T 3u1s_H          103 YMELRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTS  182 (267)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEE
T ss_pred             EEEECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCC
Confidence            4999999999999999998620      00              0    01123455564    3455543222222346


Q ss_pred             CCeEEEEEEeeeC-C-CcEEEEcCeeee------------c------ceEEEEecCCCCceeE--EEEcc
Q psy12134         69 DMRAEIICNVYAN-P-PAKRFDEGTRFD------------E------GTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        69 g~~~~l~C~~~~~-p-~~~~~~~~~~~~------------~------~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      |+.+.|.|.+.+. | +..+.|++....            +      ..|.+.....++ +.|  .+.+.
T Consensus       183 g~~~~l~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~  251 (267)
T 3u1s_H          183 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHK  251 (267)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEG
T ss_pred             CCcEEEEEEEeEEECCCeEEEECCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEEC
Confidence            8999999999874 4 345789543311            1      145566666667 888  44554

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.50  E-value=3.7e-07  Score=53.24  Aligned_cols=40  Identities=23%  Similarity=0.383  Sum_probs=31.9

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEc-CCCCceeeeEEEEEecCC
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVIYPP   55 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n-~~~~~~s~~~~l~v~~~p   55 (139)
                      ...|.|.+++.+|+|.|.|.+.+ ..+. .+..+.|.|..+|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~~~~L~V~~~P  118 (118)
T 3udw_C           78 NASLRMFGLRVEDEGNYTCLFVTFPQGS-RSVDIWLRVLAKP  118 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEEEC--
T ss_pred             CcEEEEeecChHHCeEEEEEEEECCCCC-ccceEEEEEEeCC
Confidence            45799999999999999999998 5554 5778888887654

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.49  E-value=1.6e-07  Score=56.64  Aligned_cols=28  Identities=25%  Similarity=0.499  Sum_probs=25.4

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCc
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGES   42 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~   42 (139)
                      .+.|.|.+++.+|+|.|+|.+.|..|..
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           89 ASTISIDTLVEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECCTTSS
T ss_pred             ceEEEECCCCcccCEEEEEEEEecCCcc
Confidence            3689999999999999999999998874

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.49  E-value=4.5e-07  Score=56.93  Aligned_cols=36  Identities=17%  Similarity=0.353  Sum_probs=31.3

Q ss_pred             CeEEEcccC-CCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         16 ESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|.|.+++ .+|+|.|+|.+.|..|. ....+.|.|.
T Consensus       146 ~~L~i~~v~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~  182 (184)
T 3b5h_A          146 SELHIENLNMEADPGQYRCNGTSSKGS-DQAIITLRVR  182 (184)
T ss_dssp             EEEEECSCCTTTSSEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred             eEEEEeeccccccCceEEEEEEeCCCc-ceEEEEEEEe
Confidence            389999999 99999999999999988 4666777775

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.48  E-value=8.5e-08  Score=60.43  Aligned_cols=46  Identities=22%  Similarity=0.269  Sum_probs=36.2

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   49 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l   49 (139)
                      +.|++++.++.... .+.|.++..+|+|.|+|.|.|..|.. +....|
T Consensus       127 i~W~~~g~~l~~~~-~~~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l  172 (176)
T 1hng_A          127 LKLYQGKEHLRSLR-QKTMSYQWTNLRAPFKCKAVNRVSQE-SEMEVV  172 (176)
T ss_dssp             EEEEETTEEEEEES-SSEEEEECSCCSSCEEEEEEETTEEE-EEEECC
T ss_pred             EEEEECCEECCCCC-cEEEEEEEccCCeEEEEEEEecCCCc-eecccc
Confidence            78999998887654 36677888999999999999998773 444443

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=98.48  E-value=5.2e-07  Score=58.17  Aligned_cols=68  Identities=18%  Similarity=0.236  Sum_probs=53.1

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEE
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQ  114 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~  114 (139)
                      ++|.+ ..+....+..|+.+.|.|.+.+.|.+.+.|  ++..+              ....|.|..+..+|.|.|  .+.
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            45666 455557888999999999999999999888  33321              135789999999999999  788


Q ss_pred             cccCCCC
Q psy12134        115 DKIGPGP  121 (139)
Q Consensus       115 n~~g~~~  121 (139)
                      |..|...
T Consensus        97 n~~g~~~  103 (215)
T 3mtr_A           97 NRIGQES  103 (215)
T ss_dssp             CSSCEEE
T ss_pred             ECCCceE
Confidence            8888763

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.47  E-value=9.9e-08  Score=60.54  Aligned_cols=51  Identities=20%  Similarity=0.177  Sum_probs=39.4

Q ss_pred             eEEEECCEEee------ecCCeEEEcccCCCCCEEEEEEEEcCC--CCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELL------YNRESLDLDRVTLKLAGLYQCIASNNI--GESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~--~~~~s~~~~l~v~   52 (139)
                      +.|+|++..+.      .....|.|.+++.+|+|.|+|.+.|..  ....++.+.|.|.
T Consensus       129 ~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          129 FLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             EEEEECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            68999987654      234789999999999999999998864  2235677777775

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=8.2e-07  Score=50.78  Aligned_cols=65  Identities=18%  Similarity=0.202  Sum_probs=47.4

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------ecc---eEEEEecCCCCceeEEEEcccCC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------DEG---TVTAKVLQPFSERTLSVQDKIGP  119 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~~~---~l~i~~~~~~d~g~y~~~n~~g~  119 (139)
                      +|.+...+....+.+|+++.|.|.+ +.|.+.+.|  ++..+         ..+   .|.|.++..+|.|.|.|.  .|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--~g~   84 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD--IGQ   84 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE--CSS
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE--eCC
Confidence            4555555566778899999999995 778787777  33221         123   799999999999999776  454


Q ss_pred             CC
Q psy12134        120 GP  121 (139)
Q Consensus       120 ~~  121 (139)
                      ..
T Consensus        85 ~~   86 (103)
T 2dku_A           85 AQ   86 (103)
T ss_dssp             CB
T ss_pred             ce
Confidence            44

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=4.1e-07  Score=52.18  Aligned_cols=61  Identities=8%  Similarity=0.053  Sum_probs=44.3

Q ss_pred             CCeEEecCce---EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeEEEEc
Q psy12134         54 PPEVSVEKQW---IHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        54 ~p~~~~~~~~---~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      +|.+...+..   ..+..|+++.|.|.+.+.|.+ +.|  ++..+            ....|.|.++..+|.|.|.|.-
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT   84 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence            4555544444   577899999999999999888 777  44332            1136899999999999994443

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.44  E-value=1.4e-06  Score=55.01  Aligned_cols=50  Identities=20%  Similarity=0.244  Sum_probs=39.3

Q ss_pred             eEEEE--CCEEeeec-------------CCeEEEcccC-CCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFF--SKIELLYN-------------RESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~--~~~~~~~~-------------~~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|++  ++..+...             .+.|.|.+++ .+|+|.|+|.+.|..|. .+..+.|.|.
T Consensus       124 i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~  189 (190)
T 2wv3_A          124 WMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS-ASVSTVLRVR  189 (190)
T ss_dssp             EEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCE-EEEEEEEEEE
T ss_pred             eEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCc-ceeEEEEEEE
Confidence            78999  66665321             1369999999 79999999999999988 5777777764

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.44  E-value=2e-07  Score=53.40  Aligned_cols=50  Identities=16%  Similarity=0.250  Sum_probs=37.2

Q ss_pred             eEEEECCEEeeec-------C---CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLYN-------R---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|+|++..+...       +   ..|.|.+++.+|+|.|+|.    .+. .+..+.|.|..+|.
T Consensus        39 v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~-~~~~~~l~V~~~p~   98 (103)
T 2e7b_A           39 VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGD-QTTSATLTVTALPS   98 (103)
T ss_dssp             CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----CSS-CBCCBCEEEECCCC
T ss_pred             eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----ECC-cEEEEEEEEEeccc
Confidence            6899998765321       2   3599999999999999998    333 35667788877663

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.44  E-value=3.1e-07  Score=65.93  Aligned_cols=53  Identities=23%  Similarity=0.398  Sum_probs=40.1

Q ss_pred             eEEEECCEEeee-----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY-----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ++|+++++....           .++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...+
T Consensus       382 i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~v~~~~  445 (452)
T 3zyi_A          382 VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNVSTAG  445 (452)
T ss_dssp             EEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEECSSCE-EEEEEEEEC----
T ss_pred             EEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEEcCCCc-EEEEEEEEEEccc
Confidence            789995543321           2478999999999999999999999988 5888888887654

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.44  E-value=5.2e-08  Score=54.04  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             eEEEECCEEeee-cCCeEEEccc-CCCCCEEEEEEEEc
Q psy12134          2 LVIFFSKIELLY-NRESLDLDRV-TLKLAGLYQCIASN   37 (139)
Q Consensus         2 ~~W~~~~~~~~~-~~~~L~i~~v-~~~d~G~Y~C~~~n   37 (139)
                      ++|+|+|.++.. .++.|.|.++ ..+|+|.|+|.|.+
T Consensus        29 i~W~kdg~~l~~~~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           29 LKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CEEEETTEECTTCCSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             EEEEECCEECcCCCCCEEEECccCccCcCEEEEEEEcc
Confidence            689999998864 4578999996 67999999999975

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.43  E-value=4e-07  Score=55.51  Aligned_cols=39  Identities=23%  Similarity=0.317  Sum_probs=34.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      ..|.|.+++.+|+|.|+|.+.|. +. .+..+.|.|..+|.
T Consensus       103 ~~L~I~~v~~~DsG~Y~C~~~n~-~~-~~~~~~L~V~~~P~  141 (145)
T 1z9m_A          103 LSISISNVALADEGEYTCSIFTM-PV-RTAKSLVTVLGIPQ  141 (145)
T ss_dssp             EEEEECSCCGGGCEEEEEEECSS-SC-EEEEEEEEEECCCC
T ss_pred             EEEEECCCChhhCEEEEEEEEcC-CC-ceEEEEEEEEeCCC
Confidence            67999999999999999999998 66 68888999987663

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.43  E-value=3.6e-07  Score=57.61  Aligned_cols=40  Identities=10%  Similarity=0.199  Sum_probs=33.9

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      +.|++++..+..         .++.|.|.+++.+|+|.|+|.+.|..+.
T Consensus       132 v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  180 (191)
T 1epf_A          132 IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG  180 (191)
T ss_dssp             EEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             EEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecce
Confidence            789999988743         2358999999999999999999998744

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.43  E-value=1.5e-07  Score=61.33  Aligned_cols=54  Identities=19%  Similarity=0.203  Sum_probs=40.5

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCC----CceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIG----ESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~----~~~s~~~~l~v~~~p   55 (139)
                      +.|+|+|..+..      ....|.|.+++.+|+|.|+|.+.|...    ...++.+.|.|...+
T Consensus       137 ~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          137 FSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             EEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred             EEEEECCCcccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence            689999876532      357899999999999999999998532    235778888887644

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=3.2e-07  Score=52.33  Aligned_cols=70  Identities=14%  Similarity=0.125  Sum_probs=49.8

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCCCCCCCcceee
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLRPSAY  130 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~~~~  130 (139)
                      ...+..|+.+.|.|.+.+.| +.+.|  ++..        .....|.|..+..+|.|.|  .+.|..|..   .....+.
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~---~~~~~l~   87 (99)
T 2cr3_A           12 SFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSD---TTYFSVN   87 (99)
T ss_dssp             ECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEE---EEEEEEC
T ss_pred             CeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceE---EEEEEEE
Confidence            34567899999999999877 57778  3322        2345899999999999999  778887764   2233444


Q ss_pred             eeCCCC
Q psy12134        131 MADAPP  136 (139)
Q Consensus       131 ~~~~~~  136 (139)
                      +.+.|+
T Consensus        88 V~~~~~   93 (99)
T 2cr3_A           88 VSDALP   93 (99)
T ss_dssp             BCSCCS
T ss_pred             EecCCC
Confidence            445444

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.41  E-value=4.5e-07  Score=52.05  Aligned_cols=63  Identities=14%  Similarity=0.020  Sum_probs=45.6

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc--Ce--------------e--e-----ecceEEEEecCCCCce
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE--GT--------------R--F-----DEGTVTAKVLQPFSER  109 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~--~~--------------~--~-----~~~~l~i~~~~~~d~g  109 (139)
                      ..|.+...+....+..|+++.|.|.+.+.|.+.+.|.  +.              +  .     ....|.|.++..+|.|
T Consensus         5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G   84 (108)
T 3m45_A            5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG   84 (108)
T ss_dssp             ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCE
T ss_pred             cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCe
Confidence            3455555556677889999999999999988888882  11              0  0     2347899999999999


Q ss_pred             eE--EEEc
Q psy12134        110 TL--SVQD  115 (139)
Q Consensus       110 ~y--~~~n  115 (139)
                      .|  .+.|
T Consensus        85 ~Y~C~~~n   92 (108)
T 3m45_A           85 QYTCSLFT   92 (108)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEEc
Confidence            99  5556

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.41  E-value=4.4e-07  Score=51.36  Aligned_cols=62  Identities=8%  Similarity=-0.077  Sum_probs=45.6

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------e---cceEEEEecCCCCceeE--EEEcc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------D---EGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~---~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      +|.+...+....+.+|+++.|.|.+.+. ++.+.|  ++..+         .   ...|.|.++..+|.|.|  .|.|.
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~~-~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSEP-DVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESSS-SCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECCC-CCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC
Confidence            4556666677788899999999999864 456667  44432         1   13699999999999999  45453

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.41  E-value=5.3e-07  Score=58.29  Aligned_cols=40  Identities=35%  Similarity=0.413  Sum_probs=35.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.
T Consensus       185 ~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~  224 (231)
T 3ojm_B          185 EVLALFNVTEADAGEYICKVSNYIGQ-ANQSAWLTVLPKQQ  224 (231)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCC-
T ss_pred             cEEEEecCCHHHCeEEEEEEEeccce-EeeEEEEEEecCCC
Confidence            56999999999999999999999988 48889999987764

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.40  E-value=7.7e-07  Score=53.30  Aligned_cols=56  Identities=11%  Similarity=0.065  Sum_probs=45.5

Q ss_pred             CCCCeEEEEEEeeeCCCcEEEE--cCeee-------------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         67 APDMRAEIICNVYANPPAKRFD--EGTRF-------------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      ..++.+.|.|.+.|.|.|.+.|  +|..+                   ..+.|.|..+...|.|.|  .|.|.+|....
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~   91 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA   91 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence            3578999999999999999988  44331                   124689999999999999  89999997653

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.39  E-value=5.3e-07  Score=53.15  Aligned_cols=58  Identities=7%  Similarity=-0.056  Sum_probs=43.5

Q ss_pred             EeeCCCCeEEEEEEeeeCC--CcEEEE--cCee--------------------eecceEEEEecCCCCceeE--EEEccc
Q psy12134         64 IHTAPDMRAEIICNVYANP--PAKRFD--EGTR--------------------FDEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p--~~~~~~--~~~~--------------------~~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      ..+..|+++.|.|.+.+.|  .+.+.|  ++..                    .....|.|.++..+|.|.|  .|.|..
T Consensus        18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~   97 (122)
T 3s35_X           18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL   97 (122)
T ss_dssp             EEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCC
Confidence            4667899999999999844  466788  2221                    0234699999999999999  778887


Q ss_pred             CCCC
Q psy12134        118 GPGP  121 (139)
Q Consensus       118 g~~~  121 (139)
                      |...
T Consensus        98 g~~~  101 (122)
T 3s35_X           98 MTKK  101 (122)
T ss_dssp             CEEE
T ss_pred             CceE
Confidence            7655

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.37  E-value=4.2e-06  Score=47.56  Aligned_cols=61  Identities=8%  Similarity=-0.009  Sum_probs=44.7

Q ss_pred             CCeEEecCce-EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeEEEEc
Q psy12134         54 PPEVSVEKQW-IHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        54 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      +|.+...+.. ..+..|+++.|.|.+. .|.+.+.|  ++..+            ....|.|.++..+|.|.|.|.-
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA   82 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE
Confidence            5666555444 5678999999999998 68888888  33321            1125999999999999995554

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.37  E-value=1.8e-06  Score=49.63  Aligned_cols=62  Identities=13%  Similarity=0.058  Sum_probs=47.8

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------ec---ceEEEEecCCCCceeE--EEEcc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------DE---GTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~~---~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      +|.+...+....+..|+++.|.|.+.+.|.+ +.|  ++..+         ..   ..|.|..+..+|.|.|  .+.|.
T Consensus         8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   85 (106)
T 2dlt_A            8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY   85 (106)
T ss_dssp             CCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred             CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC
Confidence            4666666677788899999999999988877 777  33321         11   3799999999999999  66666

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.37  E-value=1.8e-06  Score=54.58  Aligned_cols=66  Identities=12%  Similarity=0.072  Sum_probs=51.2

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEee-eCCCcEEEE--cCeeee---------------------cceEEEEecCCCCce
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKRFD--EGTRFD---------------------EGTVTAKVLQPFSER  109 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~~--~~~~~~---------------------~~~l~i~~~~~~d~g  109 (139)
                      +|.+...+....+.+|+++.|.|.+. +.|.+.+.|  ++..+.                     ...|.|..+..+|.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            46667677778889999999999999 888888878  333211                     357899999999999


Q ss_pred             eE--EEEcccCC
Q psy12134        110 TL--SVQDKIGP  119 (139)
Q Consensus       110 ~y--~~~n~~g~  119 (139)
                      .|  .+.|..|.
T Consensus        82 ~Y~C~~~~~~~~   93 (195)
T 2c5d_C           82 QYQCLVFLGHQT   93 (195)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEEEeCCCc
Confidence            99  66666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.37  E-value=6e-07  Score=64.67  Aligned_cols=50  Identities=22%  Similarity=0.326  Sum_probs=41.0

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ++|+++++.+..          .++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus       417 i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~  476 (477)
T 2id5_A          417 ILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHVR  476 (477)
T ss_dssp             EEEECTTSCBC-------CEECTTSCEEESSCCSTTCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEECCccccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCCc-EEEEEEEEEe
Confidence            789999866532          2478999999999999999999999887 4777777774

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.37  E-value=6.2e-07  Score=67.41  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=41.3

Q ss_pred             eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCCCC---c-eeeeEEEEEecCCeEEecC-ceEeeCC
Q psy12134          2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNIGE---S-TSKNFIVNVIYPPEVSVEK-QWIHTAP   68 (139)
Q Consensus         2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~---~-~s~~~~l~v~~~p~~~~~~-~~~~~~~   68 (139)
                      ++|++++.++..        .+..|.|.+++..|+|.|.|.+.+..+.   . ....+.|.|..+|.+...+ ......+
T Consensus       564 v~W~~~~~~l~~~~~~~~~~~~~~LlI~~v~~~DsG~Y~C~A~e~~~~~~~~~~~~~~~l~V~v~P~~~~~p~~~~~~~~  643 (663)
T 1olz_A          564 VFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTE  643 (663)
T ss_dssp             EEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEEEC----------------
T ss_pred             EEEEECCeeccccCcceEEecCCeEEEEecCcccCeEEEEEEEECccCCCceEEEEEEEEEEEeCCccCCCCCChhhhhc
Confidence            789999876532        2467999999999999999999987422   1 3578889999999887553 3345578


Q ss_pred             CCeEEEEEEeee
Q psy12134         69 DMRAEIICNVYA   80 (139)
Q Consensus        69 g~~~~l~C~~~~   80 (139)
                      |+.+.+.|.+..
T Consensus       644 g~~~~~~~~~~~  655 (663)
T 1olz_A          644 GSRIATKVLVAS  655 (663)
T ss_dssp             ------------
T ss_pred             CCceEEEeeccc
Confidence            999999998864

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.37  E-value=2.8e-07  Score=61.10  Aligned_cols=53  Identities=19%  Similarity=0.147  Sum_probs=41.5

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCC--CCceeeeEEEEEecC
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNI--GESTSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~--~~~~s~~~~l~v~~~   54 (139)
                      +.|+|+|..+..      ....|.|.+++.+|+|.|+|.+.|..  ....++.+.|.|...
T Consensus       132 ~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          132 FLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             EEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             EEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            689999876542      34789999999999999999998863  223578899999863

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.36  E-value=4.2e-07  Score=58.28  Aligned_cols=53  Identities=13%  Similarity=-0.056  Sum_probs=40.0

Q ss_pred             eEEEECCEEeeec-------------CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecC
Q psy12134          2 LVIFFSKIELLYN-------------RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~   54 (139)
                      +.|++++......             .+.|.|..+..+|+|.|+|.|+|..+.. .+..+.|.|+|.
T Consensus       154 ~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y~  220 (225)
T 4fmk_A          154 ITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYH  220 (225)
T ss_dssp             EEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTTC
T ss_pred             EEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEEC
Confidence            5788887554221             1469999999999999999999987653 567778888764

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}

Probab=98.34  E-value=1.6e-06  Score=49.98  Aligned_cols=52  Identities=21%  Similarity=0.358  Sum_probs=40.0

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~~   53 (139)
                      +.|+|++.....       ....+.|..++..|+|.|+|...++.+ +..++.+.|.|..
T Consensus        42 f~l~k~g~~~~~~~~~~~~~~a~f~i~~vt~~~aG~Y~C~~~~~~~~S~~Sdpl~L~VtG  101 (102)
T 4esk_A           42 VRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSKTLELKVIK  101 (102)
T ss_dssp             EEEEETTEEEEEEECCSSCSEEEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEEC
T ss_pred             EEEEECCccccccccCCCCcceEEEeCcCCcccCeeEEEEEeCCCccccCcCCEEEEEEe
Confidence            678898865431       246799999999999999999988764 3357888888763

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.34  E-value=9.3e-07  Score=50.64  Aligned_cols=57  Identities=16%  Similarity=0.076  Sum_probs=41.9

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeEEEE
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      +...+....+..|+++.|.|.+.+ |++.+.|  ++..+              ....|.|..+..+|.|.|.|.
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   82 (103)
T 1x44_A           10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM   82 (103)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEE
T ss_pred             eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEE
Confidence            444555667789999999999977 6677777  33321              014699999999999999444

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.34  E-value=2.3e-06  Score=53.89  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=52.3

Q ss_pred             ecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------ecc---eEEEEecCCCCceeE--EEEc
Q psy12134         52 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------DEG---TVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        52 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~~~---~l~i~~~~~~d~g~y--~~~n  115 (139)
                      ..+|.+...+....+.+|+++.|.|.+.+.|.+.+.|  ++...         ..+   .|.|..+..+|.|.|  .+.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            4567777667777888999999999999999888888  33321         112   799999999999999  5666


Q ss_pred             ccCCC
Q psy12134        116 KIGPG  120 (139)
Q Consensus       116 ~~g~~  120 (139)
                      ..|..
T Consensus        85 ~~~~~   89 (197)
T 3lcy_A           85 EVGEV   89 (197)
T ss_dssp             SSCEE
T ss_pred             CCCce
Confidence            65543

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.34  E-value=4.2e-07  Score=52.71  Aligned_cols=52  Identities=17%  Similarity=0.111  Sum_probs=39.6

Q ss_pred             eEEEECCEEee------------ecCCeEEEcccCCCCCEEEEEEEEcCC-CCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELL------------YNRESLDLDRVTLKLAGLYQCIASNNI-GESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~-~~~~s~~~~l~v~~   53 (139)
                      +.|+|+|..+.            .....|.|..++.+|+|.|+|...++. .+..++.+.|.|..
T Consensus        39 f~l~k~g~~~~~~~~~~~~~~~~~~~~~f~i~~vt~~~aG~Y~C~~~~~~~~S~~Sdpl~L~Vtg  103 (106)
T 3kgr_A           39 FRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRCIYYKPPKWSEQSDYLELLVKE  103 (106)
T ss_dssp             EEEEEGGGTEEEEECCCEEEETTEEEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             EEEEECCCccccccccccccCCCCcceEEEecCCCcCCCceEEEEeeCCCcccCCCCCEEEEEeC
Confidence            67999876441            123679999999999999999998763 23358888888864

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.33  E-value=2.7e-06  Score=49.41  Aligned_cols=71  Identities=8%  Similarity=-0.031  Sum_probs=51.8

Q ss_pred             eeeeEEEEEecC-CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------ecc---eEEEEecCCCC
Q psy12134         43 TSKNFIVNVIYP-PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------DEG---TVTAKVLQPFS  107 (139)
Q Consensus        43 ~s~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~~~---~l~i~~~~~~d  107 (139)
                      .+..+.|.|... |.+...+....+.+|+++.|.|.+.+.  +.+.|  ++..+         ..+   .|.|.++..+|
T Consensus         7 ~~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
T 2edh_A            7 GRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAED   84 (113)
T ss_dssp             CCCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTT
T ss_pred             CcEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhh
Confidence            356677888754 467666667788999999999999775  45566  33321         123   79999999999


Q ss_pred             ceeEEEEc
Q psy12134        108 ERTLSVQD  115 (139)
Q Consensus       108 ~g~y~~~n  115 (139)
                      .|.|.|.-
T Consensus        85 ~G~Y~C~a   92 (113)
T 2edh_A           85 AGEYLCMC   92 (113)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEe
Confidence            99995554

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.33  E-value=1.6e-06  Score=55.12  Aligned_cols=63  Identities=10%  Similarity=0.006  Sum_probs=47.4

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      +|.+...+.. .+.+|+++.|.|.+.+ +++.+.|  ++..           .....|.|..+..+|.|.|  .+.|..|
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG   82 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCc
Confidence            5667666665 6778999999999998 5566655  3332           1235799999999999999  6778776

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.33  E-value=9e-07  Score=65.60  Aligned_cols=50  Identities=24%  Similarity=0.246  Sum_probs=42.3

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ++|+|++.++...          ...|.|.++.++|+|.|+|+|.|..|. .+..+.|+|.
T Consensus       514 v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~-~~~~v~l~Vt  573 (573)
T 3uto_A          514 VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGT-KEEIVFLNVT  573 (573)
T ss_dssp             EEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred             EEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCc-EEEEEEEEEC
Confidence            7899999887432          267999999999999999999999988 5888888773

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.32  E-value=9.7e-07  Score=52.36  Aligned_cols=40  Identities=15%  Similarity=0.200  Sum_probs=32.7

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      ...|.|.+++.+|+|.|.|.+.+..+......+.|.|..+
T Consensus        72 ~~sL~I~nv~~~DsG~Y~c~v~~~~~~~~~~~~~L~V~~~  111 (121)
T 2edo_A           72 SGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDP  111 (121)
T ss_dssp             TCCEEESSCCGGGCSEEEEEEEETTTEEEECCEECEEECC
T ss_pred             CceEEEeCCCHHHCeEEEEEEEcCCCcEEEEEEEEEEECC
Confidence            3689999999999999999998765544567788888754

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=7.7e-07  Score=50.90  Aligned_cols=61  Identities=8%  Similarity=0.025  Sum_probs=44.8

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------e---cceEEEEecCCCCceeEEEEc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------D---EGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~---~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      +|.+...+....+..|+++.|.|.+.+ |.+.+.|  ++..+         .   ...|.|.++..+|.|.|.|.-
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (103)
T 2edf_A            8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEV   82 (103)
T ss_dssp             CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEEC
T ss_pred             CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEE
Confidence            455666666678889999999999997 6667777  33321         1   126899999999999994443

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.31  E-value=1.9e-06  Score=50.01  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      ..|.|.+|...|+|.|+|.|.+..|...+....|.|..
T Consensus        79 fiL~f~~V~~sDsG~YrCsAn~~~g~ieSHs~ti~V~~  116 (122)
T 1xau_A           79 FVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVRE  116 (122)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             EEEEEeeEEEcCCccEEEEeeCCCCceeeeEEEEEEEe
Confidence            37899999999999999999998877666777777764

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.31  E-value=2.7e-06  Score=53.67  Aligned_cols=66  Identities=8%  Similarity=-0.090  Sum_probs=49.9

Q ss_pred             ecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCe--eeecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         52 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGT--RFDEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        52 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~--~~~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      ..+|.+...+.. .+.+|+++.|.|.+.+ +.+.+.|  ++.  ......|.|.++..+|.|.|  .+.|..|.
T Consensus         6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   77 (184)
T 2gi7_A            6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLW   77 (184)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCEESSSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccccCcccEEEECcCChhhCceEEEEEEcCCCc
Confidence            346777766654 6789999999999987 6667766  443  24557899999999999999  66776653

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.30  E-value=2.2e-06  Score=54.53  Aligned_cols=67  Identities=9%  Similarity=-0.010  Sum_probs=48.8

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      .+|.+...+.. .+.+|+++.|.|.+.+.|. .+.|  ++...           ....|.|.++..+|.|.|  .+.|..
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA   81 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence            45667666654 6778999999999998766 6766  33221           235799999999999999  666766


Q ss_pred             CCCC
Q psy12134        118 GPGP  121 (139)
Q Consensus       118 g~~~  121 (139)
                      |...
T Consensus        82 g~~~   85 (196)
T 2d3v_A           82 GWSE   85 (196)
T ss_dssp             EECB
T ss_pred             CcCC
Confidence            5443

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=98.29  E-value=3.8e-06  Score=61.91  Aligned_cols=87  Identities=9%  Similarity=0.032  Sum_probs=56.6

Q ss_pred             eEEEECCEEeee---------c------CCeEEEcccCCCCCEEEEEEEEcCCCC-ceeeeEEEE--EecCCeEEecCce
Q psy12134          2 LVIFFSKIELLY---------N------RESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVN--VIYPPEVSVEKQW   63 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~------~~~L~i~~v~~~d~G~Y~C~~~n~~~~-~~s~~~~l~--v~~~p~~~~~~~~   63 (139)
                      |+||+++..+..         .      .+.|.|......|.+.|+|++.+.... .....+.+.  +..+|.+.+....
T Consensus       379 v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~~~~~~y~C~v~~~~~~~~~~~~~~~~~~~~~~P~V~~~~~~  458 (551)
T 1ntl_A          379 FSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPP  458 (551)
T ss_pred             EEEEECCccccccccCCceECCCCeEEEEEeeEcCHHHccCCceEEEEEecCCCCCCeEEEEecCCCCCcCCceEEeCCC
Confidence            789998876431         1      144667666667789999999987652 233334333  3466776543333


Q ss_pred             EeeCCCCeEEEEEEeeeCCCc--EEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      .....++.+.|.|.+.++.|+  .+.|
T Consensus       459 ~~~~~~~~~~L~C~v~gfyP~~i~v~W  485 (551)
T 1ntl_A          459 KEQMAKDKVSLTCMITDFFPEDITVEW  485 (551)
T ss_pred             hhhccCCceEEEEEEEEeECCCCEEEE
Confidence            334568999999999996554  4577

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.28  E-value=3.1e-06  Score=53.46  Aligned_cols=66  Identities=14%  Similarity=0.217  Sum_probs=51.2

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecc--eEEEEecCCCCceeE--EEEc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEG--TVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~--~l~i~~~~~~d~g~y--~~~n  115 (139)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|  ++...            ..+  .|.|..+..+|.|.|  .+.|
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   83 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN   83 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEE
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEE
Confidence            56777666777888999999999999999988888  33321            112  799999999999999  5667


Q ss_pred             ccCC
Q psy12134        116 KIGP  119 (139)
Q Consensus       116 ~~g~  119 (139)
                      ..|.
T Consensus        84 ~~g~   87 (197)
T 2j8h_A           84 QGGS   87 (197)
T ss_dssp             TTEE
T ss_pred             CCCc
Confidence            6655

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.28  E-value=3.4e-07  Score=59.34  Aligned_cols=51  Identities=16%  Similarity=0.188  Sum_probs=34.6

Q ss_pred             eEEEECCEEeeecC-----------------------CeEEEcccCCCCCEEEEEEEEcCC-----CCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYNR-----------------------ESLDLDRVTLKLAGLYQCIASNNI-----GESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~~-----------------------~~L~i~~v~~~d~G~Y~C~~~n~~-----~~~~s~~~~l~v~   52 (139)
                      +.|++++.++....                       +.|.|.....+|+|.|+|.|.|..     +...+..+.|.|+
T Consensus       152 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V~  230 (231)
T 2pet_A          152 ITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH  230 (231)
T ss_dssp             EEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCCC
T ss_pred             EEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEEe
Confidence            78999998875443                       557886555556999999999952     2223455555554

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.28  E-value=9.3e-06  Score=55.34  Aligned_cols=100  Identities=14%  Similarity=0.168  Sum_probs=65.0

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE-EecCceEeeCCCCeEEEEEEeeeCCCc---EEEE--cC
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHTAPDMRAEIICNVYANPPA---KRFD--EG   90 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~~--~~   90 (139)
                      .+.|.+++.+  |.|+|++.. .+...+..+.|.|..+|.- .+......+..|+.+.|.|.+.+.+|+   .+.|  ++
T Consensus        51 ~~~l~~v~~~--~~y~C~~~~-~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~  127 (291)
T 1mq8_A           51 VYELSNVQED--SQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE  127 (291)
T ss_dssp             EEEEESCCSC--CCCEEEEEC-SSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSS
T ss_pred             EEEEEecccC--CeEEEEEEc-CCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECC
Confidence            5788888743  469999964 4445788889999987753 233333346789999999999886554   3566  33


Q ss_pred             eeee---------cceEEEEecCCCCceeE--EEEcccCC
Q psy12134         91 TRFD---------EGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        91 ~~~~---------~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      ..+.         ...+.+...+.++.+.|  .|.|.++.
T Consensus       128 ~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~  167 (291)
T 1mq8_A          128 KELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRP  167 (291)
T ss_dssp             SEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGG
T ss_pred             EEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCc
Confidence            3221         11344444445556688  77877664

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.26  E-value=4.4e-06  Score=52.16  Aligned_cols=64  Identities=11%  Similarity=0.064  Sum_probs=45.5

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeeee--------------cceEEEEecCCCCceeE--EEEcc
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRFD--------------EGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~--------------~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      |.+...+....+..|+++.|.|.+.+.|.+.+.|  ++....              ...|.|.++..+|.|.|  .+.|.
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   82 (182)
T 1rhf_A            3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDG   82 (182)
T ss_dssp             ----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSC
T ss_pred             CEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcC
Confidence            3444555667778999999999999988888888  333211              25788999999999999  55555


Q ss_pred             cC
Q psy12134        117 IG  118 (139)
Q Consensus       117 ~g  118 (139)
                      .|
T Consensus        83 ~~   84 (182)
T 1rhf_A           83 GE   84 (182)
T ss_dssp             TT
T ss_pred             CC
Confidence            33

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=3e-07  Score=52.57  Aligned_cols=61  Identities=11%  Similarity=0.021  Sum_probs=44.7

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeeee----------------cceEEEEecCCCCceeEEEEc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRFD----------------EGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~----------------~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      +|.+...+....+..|+++.|.|.+.+.| +.+.|  ++..+.                ...|.|.++..+|.|.|.|.-
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   86 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT   86 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEEC
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEE
Confidence            45565666667888999999999999888 77777  332211                125888999999999995543

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.24  E-value=1.3e-05  Score=54.37  Aligned_cols=52  Identities=12%  Similarity=0.087  Sum_probs=35.1

Q ss_pred             eEEEECCEEeeec--------CCeEEEcccCCCCCEEEEEEEEcCCCCce--eeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN--------RESLDLDRVTLKLAGLYQCIASNNIGEST--SKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~--s~~~~l~v~~~p   55 (139)
                      +.|+++|..+...        .+.|.|.++.+.| |.|+|.+.+. |...  ...+.|.+..+|
T Consensus        43 i~W~~~g~~i~~~~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~-g~~~~~~~~~~l~v~~~P  104 (303)
T 1i1r_A           43 IVWKTNHFTIPKEQYTIINRTASSVTFTDIASLN-IQLTCNILTF-GQLEQNVYGITIISGLPP  104 (303)
T ss_dssp             EEEEETTEECCGGGCEEEETTEEEEEECSCCCSE-EEEEEEEEET-TTEEEEEEEEEEEEECCC
T ss_pred             eEEEECCEECChhheeeeCCcEEEEEEcCcCCCc-eEEEEecccC-CCcceEEEEEEEeccCCC
Confidence            7899999876421        2479999998874 9999999874 3321  233445555443

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.23  E-value=1.7e-06  Score=47.99  Aligned_cols=52  Identities=10%  Similarity=0.144  Sum_probs=39.5

Q ss_pred             ceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeEEEE
Q psy12134         62 QWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      ....+.+|+++.|.|.+.+ |++.+.|  ++..+            ....|.|.++..+|.|.|.|.
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   69 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCD   69 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEE
Confidence            3456788999999999966 7777777  44432            123699999999999999664

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.22  E-value=9e-07  Score=57.47  Aligned_cols=51  Identities=8%  Similarity=-0.115  Sum_probs=32.3

Q ss_pred             eEEEECCEEeee---------cCC---eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLY---------NRE---SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~---~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      ++|+++++.+..         .++   .+.+..++.+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus       151 i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~-~~~~~~v~v~e  213 (226)
T 4f80_A          151 IQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLG-LEKTASISIAD  213 (226)
T ss_dssp             EEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTT-EEEEEEECCCT
T ss_pred             EEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCC-eEEEEEEEECC
Confidence            789997654321         112   2334567889999999999999988 47777777764

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.22  E-value=1.2e-06  Score=56.46  Aligned_cols=42  Identities=21%  Similarity=0.259  Sum_probs=32.6

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEe
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV   59 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~   59 (139)
                      .|.|.+++.+|+|.|+|.+.|..|. ....+.|.|..+|....
T Consensus       171 ~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~  212 (222)
T 4i0k_A          171 VHSVLRVVLGANGTYSCLVRNPVLQ-QDAHGSVTITGQPLTFP  212 (222)
T ss_dssp             EEEEEEEECCTTCEEEEEEEETTTT-EEEEEEEECCC------
T ss_pred             EEEEEEEEeCCCCEEEEEEECCCCC-CceEEEEEEeCCccccC
Confidence            3788999999999999999999988 58889999988875543

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}

Probab=98.22  E-value=4.5e-06  Score=49.41  Aligned_cols=53  Identities=21%  Similarity=0.349  Sum_probs=39.9

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEecC
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~~~   54 (139)
                      +.|+|+|.....       ....+.|..++.+|+|.|+|...++.+ ...++.+.|.|...
T Consensus        42 f~L~k~g~~~~~~~~~~~~~~a~f~i~~vt~~daG~Y~C~y~~~~~wS~~Sdpl~L~Vtg~  102 (118)
T 4ety_A           42 VRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSKTLELKVIKE  102 (118)
T ss_dssp             EEEEETTEEEEEEECCSSSSEEEEEECSCCGGGCEEEEEEEEC----CEECCCEEEEEECC
T ss_pred             EEEEECCcCccccccCCCCcceEEEeCccCccCCeEEEEEeeCCCccccccCCEEEEEEEe
Confidence            678899876431       236799999999999999999987654 33588899988875

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.20  E-value=1.7e-06  Score=51.65  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      .+|.|.+++.+|+|.|.|++.|..+. .++.+.|.|-
T Consensus        84 ~sL~I~~v~~~D~G~Y~C~v~~~~g~-~~~~v~LkVG  119 (125)
T 4gos_A           84 ASLRLKNVQLTDAGTYKCYIITSKGK-GNANLEYKTG  119 (125)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEeCCCe-EEEEEEEEEC
Confidence            47999999999999999999998777 5777777774

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.20  E-value=1.2e-06  Score=56.01  Aligned_cols=48  Identities=19%  Similarity=0.179  Sum_probs=34.0

Q ss_pred             eEEEECCEEeee-----------cCCeEEEcccCCCCCEEEEEEEEcCC----CCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY-----------NRESLDLDRVTLKLAGLYQCIASNNI----GESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~~~n~~----~~~~s~~~~l~v   51 (139)
                      +.|+|+|..+..           ....|.|.+++  |+|.|+|.+.+..    ....++.+.|.|
T Consensus       138 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~~~~~~s~~S~~~~l~V  200 (201)
T 1nkr_A          138 YHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHDSPYEWSKSSDPLLVSV  200 (201)
T ss_dssp             EEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             EEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCCCCCcCCCCCCCEEEEe
Confidence            689999876432           14679999998  9999999998642    122356666655

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.20  E-value=5.4e-06  Score=49.61  Aligned_cols=64  Identities=9%  Similarity=-0.206  Sum_probs=47.9

Q ss_pred             eEEecCceEeeCCCCeEEEEEEeeeC---CCcEEEE--cC---------ee--e----------ecceEEEEecCCCCce
Q psy12134         56 EVSVEKQWIHTAPDMRAEIICNVYAN---PPAKRFD--EG---------TR--F----------DEGTVTAKVLQPFSER  109 (139)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~~~~--~~---------~~--~----------~~~~l~i~~~~~~d~g  109 (139)
                      .|...++...+.+|+++.|.|.+.+.   |.|.+.|  ++         ..  +          ....|.|.++...|.|
T Consensus         9 ~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG   88 (126)
T 2dav_A            9 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   88 (126)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCE
Confidence            34445566778899999999999874   7888888  21         11  1          1357999999999999


Q ss_pred             eE--EEEcccCC
Q psy12134        110 TL--SVQDKIGP  119 (139)
Q Consensus       110 ~y--~~~n~~g~  119 (139)
                      +|  .+.|..|.
T Consensus        89 ~Y~Cevsn~~g~  100 (126)
T 2dav_A           89 NYRCEVTYKDKF  100 (126)
T ss_dssp             EEEEEEECSSCE
T ss_pred             EEEEEEEeCCCc
Confidence            99  77888654

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.19  E-value=7.1e-06  Score=47.56  Aligned_cols=65  Identities=5%  Similarity=-0.083  Sum_probs=42.4

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCc-----EEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccC
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-----KRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIG  118 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g  118 (139)
                      .+|.+...+.. .+.+|++++|.|.+...+..     .+.|  ++..+    ....|.|..+..+|.|.|  .+.|..|
T Consensus         7 ~kP~l~~~p~~-~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~~~~~~~l~i~~v~~~dsG~Y~C~~~~~~~   84 (108)
T 4hwn_A            7 PAPILRAVPSA-EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQSRGLSSEFQIPTASEDHSGSYWCEAATEDN   84 (108)
T ss_dssp             CCCEEEEESCS-SCBTTCCEEEEEEC---------CCEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEECTTS
T ss_pred             CCCEEEecCCC-cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccCCCcccEEEeCccCcccCeEEEEEEEeCCC
Confidence            35667665543 46789999999999866544     2545  55543    346799999999999999  5555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.19  E-value=2.4e-06  Score=61.11  Aligned_cols=79  Identities=14%  Similarity=0.172  Sum_probs=56.5

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc---Cee------------eecceEEEEecCCCCceeE--EEEcc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE---GTR------------FDEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~---~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      +|.+...+....+.+|+++.+.|.+ +.|++.+.|.   +..            ...+.|.|..++.+|.|.|  .|.|.
T Consensus       341 ~P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  419 (440)
T 3zyj_A          341 APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNS  419 (440)
T ss_dssp             CCCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEECS
T ss_pred             CCcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEEcC
Confidence            4666666677788999999999999 5688888882   211            1246799999999999999  88999


Q ss_pred             cCCCCCCCCcceeeeeCCCC
Q psy12134        117 IGPGPDSNLRPSAYMADAPP  136 (139)
Q Consensus       117 ~g~~~~~~~~~~~~~~~~~~  136 (139)
                      +|+..   .+..+++..+|+
T Consensus       420 ~G~~~---~~~~~~v~~~~~  436 (440)
T 3zyj_A          420 VGNTT---ASATLNVTGTHH  436 (440)
T ss_dssp             SCEEE---EEEEEEEC----
T ss_pred             CCcEE---EEEEEEEecccc
Confidence            88654   344555555444

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.19  E-value=4e-06  Score=48.27  Aligned_cols=61  Identities=10%  Similarity=0.048  Sum_probs=43.2

Q ss_pred             CCeEEecC-ceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------ecc---eEEEEecCCCCceeEEEEc
Q psy12134         54 PPEVSVEK-QWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------DEG---TVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        54 ~p~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~---~l~i~~~~~~d~g~y~~~n  115 (139)
                      +|.|...+ ....+..|+.+.|.|.+ +.|.+.+.|  ++..+          ..+   .|.|.++..+|.|.|.|.-
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   91 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV   91 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence            44454333 33677899999999999 678777877  33321          123   7999999999999995543

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=98.18  E-value=4e-06  Score=50.08  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=30.5

Q ss_pred             CeEEEcccCC-CCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134         16 ESLDLDRVTL-KLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus        16 ~~L~i~~v~~-~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      .+|+|.+++. +|+|+|+|.+.+.... ....+.|.|...+
T Consensus        78 aSL~i~~v~~~sD~G~YtC~v~~~~~~-~~~~i~Lkv~~~~  117 (127)
T 2jjs_C           78 ASLKMDKSDAVSHTGNYTCEVTELTRE-GETIIELKYRVVS  117 (127)
T ss_dssp             CCEEEEHHHHHTSCEEEEEEEEETTEE-EEEEEEEEECCC-
T ss_pred             EEEEEcccccccCCcEEEEEEEeCCce-EEEEEEEEEEecc
Confidence            6899999998 6999999999876543 4677777776544

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.17  E-value=6.6e-06  Score=52.19  Aligned_cols=40  Identities=18%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCc
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES   42 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~   42 (139)
                      +.|++++..+......|.+.. ..+|+|.|+|.|.|+.+..
T Consensus       132 ~~W~~~g~~l~~~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~  171 (182)
T 1hnf_A          132 LNLYQDGKHLKLSQRVITHKW-TTSLSAKFKCTAGNKVSKE  171 (182)
T ss_dssp             EEEEESSCEEEEESSCEEEEC-CSCEEEEEEEEEECSSCEE
T ss_pred             EEEEECCEECCCCCcEEEEec-ccCCCcEEEEEEEeCCCCc
Confidence            789999988844444555533 5789999999999999874

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.17  E-value=2e-06  Score=49.54  Aligned_cols=59  Identities=5%  Similarity=0.067  Sum_probs=43.6

Q ss_pred             eEEecCceEeeCCCCeEEEEEEeeeCCCc-EEEE--cCeee------------ecceEEEEecCCCCceeEEEE
Q psy12134         56 EVSVEKQWIHTAPDMRAEIICNVYANPPA-KRFD--EGTRF------------DEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      .+...+....+.+|+++.|.|.+.+.|.+ .+.|  ++..+            ....|.|.++..+|.|.|.|.
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T 2eny_A           10 GITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFS   83 (104)
T ss_dssp             CCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEE
T ss_pred             EEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEE
Confidence            34455666788899999999999987754 5667  33321            113699999999999999553

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.16  E-value=4.1e-06  Score=55.87  Aligned_cols=83  Identities=12%  Similarity=-0.017  Sum_probs=39.9

Q ss_pred             cCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcC----e-------
Q psy12134         23 VTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEG----T-------   91 (139)
Q Consensus        23 v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~----~-------   91 (139)
                      ..+.|.+.|.|.+.|..|.. .....      ..+...+....+..|+++.|.|.+.+ +.+.++|-+    .       
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~-~~~~~------~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~   74 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGS-GGGGG------MKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLIN   74 (270)
T ss_dssp             --------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEE
T ss_pred             chhhhHHHHHHHHhccCCcc-ccccc------eeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEE
Confidence            45779999999999876552 22222      23334455567788999999999865 566777721    0       


Q ss_pred             ---------------ee-------ecceEEEEecCCCCceeEEE
Q psy12134         92 ---------------RF-------DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        92 ---------------~~-------~~~~l~i~~~~~~d~g~y~~  113 (139)
                                     +.       ....|.|.++..+|.|.|.|
T Consensus        75 ~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C  118 (270)
T 3qib_D           75 FQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLC  118 (270)
T ss_dssp             EETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEE
Confidence                           00       12369999999999999933

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.15  E-value=1.1e-05  Score=53.05  Aligned_cols=104  Identities=19%  Similarity=0.130  Sum_probs=58.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC------C-ceeeeEEEEEec------CCeEEecCceEeeCCCCeEEEEEEeeeCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG------E-STSKNFIVNVIY------PPEVSVEKQWIHTAPDMRAEIICNVYANP   82 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~------~-~~s~~~~l~v~~------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p   82 (139)
                      ..|.|.+++.+|+|.|.|.+.+...      . .......|.|..      +|.+....        ..+.|.|.+.+..
T Consensus        75 ~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~--------~~~~L~C~~~g~~  146 (229)
T 1hxm_A           75 AVLKILAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK--------NGTNVACLVKEFY  146 (229)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEE--------ETTEEEEEEESCB
T ss_pred             EEEEECcCCHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcC--------CCCeEEEEEEEEe
Confidence            3799999999999999999987631      1 112334677764      34333211        1248999998864


Q ss_pred             C-c-EEEEcC-eee----------ecceEEEEecCC-CCceeE--EEEcccCCCCCCCCcc
Q psy12134         83 P-A-KRFDEG-TRF----------DEGTVTAKVLQP-FSERTL--SVQDKIGPGPDSNLRP  127 (139)
Q Consensus        83 ~-~-~~~~~~-~~~----------~~~~l~i~~~~~-~d~g~y--~~~n~~g~~~~~~~~~  127 (139)
                      | + .+.|.. ..+          .++.+.+..... .+.+.|  .+.+..+........+
T Consensus       147 P~~i~v~W~~~~~~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~~~~~t~~~p  207 (229)
T 1hxm_A          147 PKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNKTVHSTDFEV  207 (229)
T ss_dssp             SSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETTEEEEGGGGC-
T ss_pred             CCCEEEEEecCCEEecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCCCCcccccccc
Confidence            4 3 667832 221          123344433322 556667  5555544444333333

>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.15  E-value=2.4e-06  Score=46.91  Aligned_cols=40  Identities=20%  Similarity=0.388  Sum_probs=28.6

Q ss_pred             eEEEECCEEeee-cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELLY-NRESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      +.|++++..+.. ....|.|.+...+++|.|.|.+.+..+.
T Consensus        20 i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~~~~~~   60 (79)
T 1xiw_B           20 ITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKD   60 (79)
T ss_dssp             EEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-------
T ss_pred             EEEEECCcccccccCCeEEeccCcCCCCeEEEecCCCCCCc
Confidence            789999887654 4578999999999999999999887765

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.15  E-value=1.4e-05  Score=46.01  Aligned_cols=61  Identities=16%  Similarity=0.059  Sum_probs=43.5

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      +|.+...+.. .+.+|++++|.|.+.+.+ ..+.|  ++...         ....|.|..+..+|.|.|  .+.|.
T Consensus         5 kP~i~~~p~~-~v~~G~~VtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~   78 (105)
T 2vsd_A            5 QPSLSLHPSQ-GVSLGDTVTLRCHLPRMA-AWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVS   78 (105)
T ss_dssp             CCEEEEESCS-SCCTTCEEEEEEECCSSC-EEEEEEETTEEEEEEEECTTCSEEEEEEECCSGGGCEEEEEEEEEE
T ss_pred             CCEEEeCCCC-CcCcCCCEEEEEEcCCCC-cEEEEEECCccceeeeccCCCCEEEEEECCCCHHHCeEEEEEEEcC
Confidence            5667666654 678999999999998764 44545  44321         234789999999999999  44553

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.14  E-value=2.4e-06  Score=48.13  Aligned_cols=50  Identities=14%  Similarity=0.171  Sum_probs=37.2

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------e--cceEEEEecCCCCceeEEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------D--EGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~--~~~l~i~~~~~~d~g~y~~~  114 (139)
                      ..+..|+.+.|.|.+.+ |.+.+.|  ++..+          .  ...|.|.++..+|.|.|.|.
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~   79 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCV   79 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEE
Confidence            34568999999999965 7677777  44331          1  13689999999999999554

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.14  E-value=2.3e-06  Score=54.47  Aligned_cols=45  Identities=18%  Similarity=0.083  Sum_probs=33.7

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCC-CCEEEEEEEEcCCCCceeeeEE
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLK-LAGLYQCIASNNIGESTSKNFI   48 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~~~n~~~~~~s~~~~   48 (139)
                      ++|++++..+. .+..|.|.....+ |+|.|+|.|.|..+.. +..+.
T Consensus       142 i~W~~~g~~l~-~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~-s~~~~  187 (193)
T 2if7_A          142 FRWEALGNTLS-SQPNLTVSWDPRISSEQDYTCIAENAVSNL-SFSVS  187 (193)
T ss_dssp             EEEEETTEEEE-SSSEEEEEECTTTCSCCEEEEEEEETTEEE-EEEEE
T ss_pred             EEEEeCCEEcC-CCCeEEEEeccCcCCCCcEEEEEECCCCcc-ccccc
Confidence            78999998664 4457888655554 8999999999998773 44433

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.14  E-value=5.1e-06  Score=50.07  Aligned_cols=43  Identities=14%  Similarity=0.210  Sum_probs=28.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC---ceeeeEEEEEecCCeEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYPPEVS   58 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~---~~s~~~~l~v~~~p~~~   58 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+.   .......|.|...|.+.
T Consensus        77 ~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~g~gt~L~V~~~p~~~  122 (133)
T 3khq_A           77 YTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLD  122 (133)
T ss_dssp             EEEEECSCCGGGCEEEEEEESSCC-------CCCEEEEEC------
T ss_pred             EEEEECCCChHHCEEEEEEEEeCCCCcceeECCCEEEEEEecccch
Confidence            45999999999999999999987642   12455677777655443

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.11  E-value=6.6e-06  Score=46.31  Aligned_cols=58  Identities=16%  Similarity=0.125  Sum_probs=42.5

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------e---cceEEEEecCCCCceeEEEEc
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------D---EGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~---~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      +...+....+..|+++.|.|.+ +.|.+.+.|  ++..+         .   ...|.|.++..+|.|.|.|.-
T Consensus        11 ~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A           11 FSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred             eEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence            3444556677899999999999 777777888  33321         1   136899999999999995544

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.11  E-value=2.3e-06  Score=54.82  Aligned_cols=50  Identities=14%  Similarity=0.104  Sum_probs=35.4

Q ss_pred             eEEEECCEEee----ecCCeEEEcccCCCCCEEEEEEEEcCCCC-ceeeeEEEEE
Q psy12134          2 LVIFFSKIELL----YNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~-~~s~~~~l~v   51 (139)
                      ++|++++....    ...+.|.|..+..+|+|.|+|.|.|..+. ..+..+.|.|
T Consensus       159 v~W~~~~~~~~~~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          159 FSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             EEEESSTTSSSCSSCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             EEEeCCCCccCCCCceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            78999876432    23578999999999999999999997533 2345555544

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.10  E-value=5.3e-06  Score=49.12  Aligned_cols=55  Identities=9%  Similarity=-0.007  Sum_probs=42.3

Q ss_pred             ceEeeCCCCeEEEEEEeeeCCCcEEEEc---Cee---------------e-----ecceEEEEecCCCCceeE--EEEcc
Q psy12134         62 QWIHTAPDMRAEIICNVYANPPAKRFDE---GTR---------------F-----DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~~---~~~---------------~-----~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      ....+.+|+++.|.|.+.+.|.+.+.|.   +..               .     ....|.|.++..+|.|.|  .+.|.
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~   88 (124)
T 3rbg_A            9 ETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD   88 (124)
T ss_dssp             EEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS
T ss_pred             ccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC
Confidence            3456678999999999999998888882   111               0     135789999999999999  55665

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.09  E-value=2.8e-06  Score=54.84  Aligned_cols=41  Identities=10%  Similarity=-0.058  Sum_probs=28.1

Q ss_pred             eEEEECCEEeee-----------cCCe---EEEcccCCCCCEEEEEEEEcCCCCc
Q psy12134          2 LVIFFSKIELLY-----------NRES---LDLDRVTLKLAGLYQCIASNNIGES   42 (139)
Q Consensus         2 ~~W~~~~~~~~~-----------~~~~---L~i~~v~~~d~G~Y~C~~~n~~~~~   42 (139)
                      ++|+++++.+..           .++.   +.|.++..+|+|.|+|.|.|..|..
T Consensus       138 v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a  192 (203)
T 4fa8_A          138 VQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA  192 (203)
T ss_dssp             EEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEE
T ss_pred             EEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence            789987765421           1233   4456899999999999999999874

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=98.09  E-value=9.9e-06  Score=52.09  Aligned_cols=67  Identities=9%  Similarity=0.051  Sum_probs=49.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE-EecCceEeeCCCCeEEEEEEeeeCCCc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHTAPDMRAEIICNVYANPPA   84 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~   84 (139)
                      ..+.|.+++ +|.+.|.|.+.. .+...+..+.|.|...|.- .+......+..|+.++|.|.+.+..|+
T Consensus        52 ~~~~ls~vs-~d~~~~~C~~~c-~~~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~  119 (196)
T 3bn3_B           52 LARQLVDIR-EPETQPVCFFRC-ARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPR  119 (196)
T ss_dssp             EEEEEEEEC-SSEECCEEEEEE-TTEEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCG
T ss_pred             eEEEEEEEc-cCCCceEEEEEC-CCCceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCC
Confidence            348899998 888889999764 3455788999999987643 333332235689999999999886553

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.08  E-value=5e-06  Score=48.70  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=31.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+. .+..+.|.|..
T Consensus        89 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~~  125 (126)
T 1eaj_A           89 ASINVTNLQLSDIGTYQCKVKKAPGV-ANKKIHLVVLV  125 (126)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             EEEEECcCChHHCeEEEEEEEcCCcc-CCcEEEEEEEc
Confidence            56999999999999999999997665 46777887764

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=7.6e-06  Score=47.39  Aligned_cols=64  Identities=11%  Similarity=-0.019  Sum_probs=43.8

Q ss_pred             EecCCeEEecCce---EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------e---cceEEEEecCCCCceeEEE
Q psy12134         51 VIYPPEVSVEKQW---IHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------D---EGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        51 v~~~p~~~~~~~~---~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~---~~~l~i~~~~~~d~g~y~~  113 (139)
                      |..+|.+...+..   ..+..|+++.|.|.+. .|.+.+.|  ++..+         .   ...|.|.++..+|.|.|.|
T Consensus         7 v~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (113)
T 2cpc_A            7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLC   85 (113)
T ss_dssp             CCSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEE
T ss_pred             cccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEE
Confidence            4445544433322   4667899999999996 67777777  44331         1   1479999999999999955


Q ss_pred             Ec
Q psy12134        114 QD  115 (139)
Q Consensus       114 ~n  115 (139)
                      .-
T Consensus        86 ~a   87 (113)
T 2cpc_A           86 EI   87 (113)
T ss_dssp             ES
T ss_pred             EE
Confidence            43

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.08  E-value=7e-06  Score=48.26  Aligned_cols=40  Identities=13%  Similarity=0.172  Sum_probs=29.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC-ceeeeEEEEEecCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPP   55 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~-~~s~~~~l~v~~~p   55 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+. ..+..+.|.|..+|
T Consensus        81 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p  121 (124)
T 1neu_A           81 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV  121 (124)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC--
T ss_pred             EEEEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCC
Confidence            57999999999999999999987654 24677888887655

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.07  E-value=6.9e-06  Score=49.92  Aligned_cols=59  Identities=10%  Similarity=0.007  Sum_probs=44.6

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEEc---------Cee-------e-------ecceEEEEecCCCCceeE--E
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFDE---------GTR-------F-------DEGTVTAKVLQPFSERTL--S  112 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~---------~~~-------~-------~~~~l~i~~~~~~d~g~y--~  112 (139)
                      ...+....+..|+++.|.|.+.+.|.+.+.|.         +..       .       ....|.|.++..+|.|.|  .
T Consensus        42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  121 (145)
T 1z9m_A           42 QPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS  121 (145)
T ss_dssp             CCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEE
T ss_pred             ecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEE
Confidence            34455677889999999999999888888884         221       0       135789999999999999  5


Q ss_pred             EEcc
Q psy12134        113 VQDK  116 (139)
Q Consensus       113 ~~n~  116 (139)
                      +.|.
T Consensus       122 ~~n~  125 (145)
T 1z9m_A          122 IFTM  125 (145)
T ss_dssp             ECSS
T ss_pred             EEcC
Confidence            5555

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.06  E-value=6.8e-06  Score=49.53  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=32.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+. .+..+.|.|..+
T Consensus        85 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~~P  122 (139)
T 1pko_A           85 VALRIQNVRFSDEGGYTCFFRDHSYQ-EEAAVELKVEDP  122 (139)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECT
T ss_pred             EEEEEccCCHHHCEEEEEEEEcCCCc-eEEEEEEEEecC
Confidence            46999999999999999999998765 577888888843

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.04  E-value=1.2e-05  Score=45.18  Aligned_cols=58  Identities=14%  Similarity=0.097  Sum_probs=44.2

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      +....+..|+++.|.|.+.+  .+.+.|  ++..        .....|.|..+..+|.|.|  .+.|..|..
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   77 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSE   77 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcE
Confidence            44566789999999999987  456777  4433        2346899999999999999  778887743

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.03  E-value=2.1e-05  Score=45.42  Aligned_cols=26  Identities=35%  Similarity=0.549  Sum_probs=23.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+.
T Consensus        69 ~sL~I~~v~~~D~G~Y~C~v~~~~~~   94 (110)
T 1ncn_A           69 WTLRLHNLQIKDKGLYQCIIHHKKPT   94 (110)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEEECSS
T ss_pred             EEEEEcCCChHHCEEEEEEEEcCCCC
Confidence            67999999999999999999987655

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.01  E-value=1.3e-05  Score=46.22  Aligned_cols=24  Identities=17%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ..|.|.+++.+|+|.|.|.+.|..
T Consensus        71 ~~L~I~~v~~~DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           71 FTLTISSLEPEDFAMYICQQHNEY   94 (108)
T ss_dssp             EEEEECSCCTTCCSEEEEEECSSS
T ss_pred             EEEEECCCCHHHCEEEEEEEccCC
Confidence            479999999999999999998863

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.01  E-value=1.6e-05  Score=46.53  Aligned_cols=55  Identities=5%  Similarity=0.013  Sum_probs=41.7

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------------e-c---ceEEEEecCCCCcee
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------------D-E---GTVTAKVLQPFSERT  110 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------------~-~---~~l~i~~~~~~d~g~  110 (139)
                      |.+...+....+.+|+++.|.|.+.+  .+...|  |+..+                  . .   ..|.|.++..+|.|.
T Consensus         9 ~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~   86 (112)
T 2e6q_A            9 ARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGA   86 (112)
T ss_dssp             CCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSE
T ss_pred             cEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCcc
Confidence            45667777888999999999999997  445556  33221                  0 1   269999999999999


Q ss_pred             E
Q psy12134        111 L  111 (139)
Q Consensus       111 y  111 (139)
                      |
T Consensus        87 Y   87 (112)
T 2e6q_A           87 L   87 (112)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.01  E-value=9.6e-06  Score=48.11  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=26.0

Q ss_pred             eEEEcccCCCCCEEEEEEEEcC-CCCceeeeEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNV   51 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~-~~~~~s~~~~l~v   51 (139)
                      .|.|.+++.+|+|.|.|.+.+. .|. .+..+.|.|
T Consensus        94 sL~I~~v~~~D~G~Y~C~v~~~~~g~-~~~~~~L~V  128 (128)
T 3r0n_A           94 TLALHGLTVEDEGNYTCEFATFPKGS-VRGMTWLRV  128 (128)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEC
T ss_pred             EEEEccCCchhCeEEEEEEEeCCCCC-cccEEEEEC
Confidence            8999999999999999987653 344 455555543

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.00  E-value=1.2e-05  Score=51.51  Aligned_cols=62  Identities=10%  Similarity=0.024  Sum_probs=45.2

Q ss_pred             eEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcC----ee------------------e------ecceEEEEecCCCC
Q psy12134         56 EVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEG----TR------------------F------DEGTVTAKVLQPFS  107 (139)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~----~~------------------~------~~~~l~i~~~~~~d  107 (139)
                      .+...+....+.+|+++.|.|.+.+.|.+.+.|.+    ..                  .      ....|.|.++..+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED   82 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence            34454566778899999999999999888888822    10                  0      12279999999999


Q ss_pred             ceeE--EEEccc
Q psy12134        108 ERTL--SVQDKI  117 (139)
Q Consensus       108 ~g~y--~~~n~~  117 (139)
                      +|.|  .+.|..
T Consensus        83 ~G~Y~C~~~~~~   94 (213)
T 3r06_A           83 IGSYYCQQYYNY   94 (213)
T ss_dssp             CSEEEEEECSSS
T ss_pred             CEEEEEecccCC
Confidence            9999  444443

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.98  E-value=8.4e-06  Score=53.47  Aligned_cols=37  Identities=19%  Similarity=0.229  Sum_probs=27.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ..|.|.+++.+|+|.|+|.+.|...........|.|.
T Consensus       205 ~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          205 FTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            4599999999999999999998643333445556554

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.98  E-value=5.1e-06  Score=49.15  Aligned_cols=64  Identities=9%  Similarity=-0.058  Sum_probs=47.7

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeC---CCcEEEE--cC---------ee--e----------ecceEEEEecCCCCcee
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYAN---PPAKRFD--EG---------TR--F----------DEGTVTAKVLQPFSERT  110 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~~~~--~~---------~~--~----------~~~~l~i~~~~~~d~g~  110 (139)
                      +...++...+.+|+++.|.|.+.+.   |.|.+.|  ++         ..  +          ....|.|.++...|.|.
T Consensus        15 f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   94 (118)
T 2edn_A           15 FLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGY   94 (118)
T ss_dssp             CSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSC
T ss_pred             EEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEE
Confidence            3444566778899999999999875   6778878  21         11  1          13579999999999999


Q ss_pred             E--EEEcccCCC
Q psy12134        111 L--SVQDKIGPG  120 (139)
Q Consensus       111 y--~~~n~~g~~  120 (139)
                      |  .+.|..|..
T Consensus        95 Y~Cevsn~~g~~  106 (118)
T 2edn_A           95 YRLEVKAKDTCD  106 (118)
T ss_dssp             EEEEEECSSCEE
T ss_pred             EEEEEEEcCCcE
Confidence            9  788887753

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.97  E-value=1.2e-05  Score=53.42  Aligned_cols=39  Identities=15%  Similarity=0.285  Sum_probs=29.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      ..|.|.+++.+|+|.|+|.+.|...........|.|..+
T Consensus       196 ~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  234 (256)
T 1nqb_A          196 FTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA  234 (256)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred             EEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence            469999999999999999998854333345556777643

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=97.97  E-value=1.5e-05  Score=51.20  Aligned_cols=35  Identities=11%  Similarity=0.114  Sum_probs=27.2

Q ss_pred             ccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeE
Q psy12134         22 RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV   57 (139)
Q Consensus        22 ~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~   57 (139)
                      .+...|.|.|+|.|.|..|. ....+.|.|..+|..
T Consensus       181 ~v~~~d~g~Y~C~a~n~~g~-~~~~~~l~v~~~p~~  215 (222)
T 3sbw_C          181 RINTTTNEIFYCTFRRLDPE-ENHTAELVIPELPLA  215 (222)
T ss_dssp             EEECCTTCEEEEEEEETTTT-EEEEEEEECCCC---
T ss_pred             EEeccCCcEEEEEEEeCccc-eeeEEEEEecCCccc
Confidence            45678999999999999988 578888888876644

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=97.96  E-value=1.6e-05  Score=50.90  Aligned_cols=61  Identities=7%  Similarity=0.019  Sum_probs=44.7

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEEcC----ee------------------e------ecceEEEEecCCCCce
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFDEG----TR------------------F------DEGTVTAKVLQPFSER  109 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~----~~------------------~------~~~~l~i~~~~~~d~g  109 (139)
                      ...+....+..|+++.|.|.+.+.|.+.+.|..    ..                  .      ....|.|.++..+|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   84 (213)
T 3d9a_L            5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (213)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCE
Confidence            344556678899999999999999888888821    10                  0      1127899999999999


Q ss_pred             eE--EEEcccC
Q psy12134        110 TL--SVQDKIG  118 (139)
Q Consensus       110 ~y--~~~n~~g  118 (139)
                      .|  .+.|..|
T Consensus        85 ~Y~C~~~~~~~   95 (213)
T 3d9a_L           85 MYFCQQSNSWP   95 (213)
T ss_dssp             EEEEEECSSSS
T ss_pred             EEEEeeecCCc
Confidence            99  5555544

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=97.95  E-value=2e-05  Score=53.71  Aligned_cols=53  Identities=13%  Similarity=0.028  Sum_probs=38.3

Q ss_pred             eEEEECCEEeeec-------C---CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN-------R---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|++++..+...       +   +.|.|.++...|+|.|.|.+.+..+. ....+.|.|..+|
T Consensus        37 i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~-~~~~~~l~v~~~P   99 (313)
T 2d9q_B           37 ILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ-ILDQVELRAGYPP   99 (313)
T ss_dssp             CEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE-EEEEEEEEECCCC
T ss_pred             eEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce-eEEEEEEccCCCC
Confidence            6899998765221       1   56999999999999999988654332 3455677776655

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.94  E-value=1.6e-05  Score=52.60  Aligned_cols=39  Identities=10%  Similarity=0.077  Sum_probs=29.5

Q ss_pred             eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134         17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      .|.|.+++.+|+|.|.|.+.|...........|.|..++
T Consensus       209 ~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          209 SLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             EEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             EEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence            599999999999999999998654444566777777544

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=97.94  E-value=1.8e-05  Score=45.89  Aligned_cols=39  Identities=18%  Similarity=0.230  Sum_probs=31.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ..|.|.+++.+|+|.|.|.+.+... .....+.|.|...|
T Consensus        74 ~sL~I~~~~~~DsG~Y~C~v~~~~~-~~~~~v~L~V~~~p  112 (113)
T 1zox_A           74 FTVTMEDLRMSDAGIYWCGITKGGL-DPMFKVTVNIGPVP  112 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCSSS-CCEEEEEEEEECC-
T ss_pred             EEEEEccCCHHHCEEEEEeeEcCCC-CccEEEEEEEEcCC
Confidence            4799999999999999999988643 35677888887655

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=97.93  E-value=1.5e-05  Score=47.11  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc-CCCCceeeeEEEEEec
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVIY   53 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n-~~~~~~s~~~~l~v~~   53 (139)
                      .+|.|.+++.+|+|.|.|.+.+ +.|. ....+.|.|.+
T Consensus        80 ~sL~I~~v~~~DsG~Y~C~v~t~~~g~-~~~~~~L~VlE  117 (123)
T 4gjt_B           80 GSVLLRNAVQADEGEYECRVSTFPAGS-FQARLRLRVLE  117 (123)
T ss_dssp             CCEEEESCCSSSCSEEEEEEEESSSCE-EEEEEEEEC--
T ss_pred             EEEEECCCChHHCEEEEEEEEECCCCe-EEeEEEEEEEE
Confidence            4699999999999999999876 4454 56778888865

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.93  E-value=5.2e-06  Score=59.79  Aligned_cols=61  Identities=16%  Similarity=0.274  Sum_probs=49.5

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +....+..|+++.+.|.+.|.|.|.+.|  ++..            ...+.|.|..+..+|.|.|  .|.|..|...
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  468 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDS  468 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEECTTSCEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             cccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCCcEE
Confidence            4556778999999999999999999988  2221            1246799999999999999  8889888753

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=97.92  E-value=1.7e-05  Score=45.40  Aligned_cols=36  Identities=25%  Similarity=0.177  Sum_probs=28.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+. ....+.|.|.
T Consensus        72 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~l~V~  107 (109)
T 2oyp_A           72 VSLIIKNVTLDDHGTYCCRIQFPGLM-NDKKLELKLD  107 (109)
T ss_dssp             CCEEECSCCGGGCEEEEEEECCSSTT-CCEEEEEEEE
T ss_pred             EeEEEccCCChhCeEEEEEEEcCCcc-cceEEEEEEE
Confidence            57999999999999999999987654 3445555554

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=97.91  E-value=3.6e-05  Score=44.31  Aligned_cols=56  Identities=16%  Similarity=0.162  Sum_probs=41.4

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------------------e------ecceEEEEecCCCCce
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR------------------F------DEGTVTAKVLQPFSER  109 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------------------~------~~~~l~i~~~~~~d~g  109 (139)
                      ...+....+.+|+++.|.|.+.+.|.+.++|-    +..                  .      ....|.|.++..+|.|
T Consensus         5 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG   84 (108)
T 1jhl_L            5 TQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFA   84 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCS
T ss_pred             eccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            34455567789999999999999888888881    110                  0      1136899999999999


Q ss_pred             eEEE
Q psy12134        110 TLSV  113 (139)
Q Consensus       110 ~y~~  113 (139)
                      .|.|
T Consensus        85 ~Y~C   88 (108)
T 1jhl_L           85 MYIC   88 (108)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9933

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=97.89  E-value=1.4e-05  Score=50.37  Aligned_cols=38  Identities=18%  Similarity=0.385  Sum_probs=29.8

Q ss_pred             eEEEECCEEeee-cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELLY-NRESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      +.|++++..+.. .+..|.+..  .+|+|.|+|.|.|+.+.
T Consensus       132 i~W~~~~~~l~~~~~~~l~~~~--~~d~g~Y~C~a~N~~~~  170 (180)
T 2dru_A          132 LKLYQGKEHLRSLRQKTMSYQW--TNLRAPFKCKAVNRVSQ  170 (180)
T ss_dssp             EEEEETTEEEEEESSSEEEEEC--SCCSSCEEEEEEETTEE
T ss_pred             EEEEECCeECcCCCCCEEEEEE--hhcCccEEEEEecCcCc
Confidence            789999998753 345666633  78999999999999866

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=97.87  E-value=2.5e-05  Score=49.93  Aligned_cols=58  Identities=12%  Similarity=0.122  Sum_probs=43.1

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEE--c--Cee------------------e------ecceEEEEecCCCCceeE-
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFD--E--GTR------------------F------DEGTVTAKVLQPFSERTL-  111 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~--~~~------------------~------~~~~l~i~~~~~~d~g~y-  111 (139)
                      +....+.+|+++.|.|.+.+.|.+.+.|  +  +..                  .      ....|.|.++..+|.|.| 
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            5566788999999999999988888888  2  111                  0      012789999999999999 


Q ss_pred             -EEEcccC
Q psy12134        112 -SVQDKIG  118 (139)
Q Consensus       112 -~~~n~~g  118 (139)
                       .+.|..|
T Consensus        87 C~~~~~~~   94 (210)
T 1lk3_L           87 CQQSWNGP   94 (210)
T ss_dssp             EEECSSSS
T ss_pred             EEEEcCCC
Confidence             4555544

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=97.87  E-value=2.4e-05  Score=51.58  Aligned_cols=40  Identities=18%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ..|.|.+++.+|+|.|.|.+.|..+........|.|...+
T Consensus       207 ~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~  246 (253)
T 3uzq_A          207 FTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPL  246 (253)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC-
T ss_pred             EEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCC
Confidence            3599999999999999999998665444556667776544

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=97.87  E-value=5.2e-06  Score=45.89  Aligned_cols=51  Identities=6%  Similarity=0.044  Sum_probs=39.0

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---ecceEEEEec-CCCCceeEEEEcc
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF---DEGTVTAKVL-QPFSERTLSVQDK  116 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---~~~~l~i~~~-~~~d~g~y~~~n~  116 (139)
                      ..+..|++++|.|.+.+.|+  +.|  ++..+   .++.|.|.++ ..+|+|.|.|...
T Consensus         9 ~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~~~~~L~I~~v~~~~DsG~Y~C~A~   65 (82)
T 3r08_E            9 KVSISGTSVELTCPLDSDEN--LKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTP   65 (82)
T ss_dssp             EEEEETTEEEEECSSCCCSS--CEEEETTEECTTCCSSCCBCCSCCTTTTCSCEEEECS
T ss_pred             eEEEcCCeEEEEEECCCCCc--EEEEECCEECcCCCCCEEEECccCccCcCEEEEEEEc
Confidence            34457999999999999985  666  55544   3568999996 7899999966543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=97.87  E-value=2.7e-05  Score=51.07  Aligned_cols=36  Identities=19%  Similarity=0.354  Sum_probs=25.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC-ceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~-~~s~~~~l~v   51 (139)
                      +.|.|.....+|.|.|+|.+.|..+. .....+.|.|
T Consensus       188 s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          188 SCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             EEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             EEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            56788888889999999999998765 3566777777

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=97.86  E-value=4.3e-05  Score=56.68  Aligned_cols=70  Identities=13%  Similarity=0.170  Sum_probs=56.0

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      ..|.+...+....+..|+++.|.|.+.+.|.|.+.|  ++..+            ....|.|..+...|.|.|  .|.|.
T Consensus       481 ~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~  560 (573)
T 3uto_A          481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS  560 (573)
T ss_dssp             GSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeC
Confidence            357676666677888999999999999999999988  33321            224688899999999999  89999


Q ss_pred             cCCCCC
Q psy12134        117 IGPGPD  122 (139)
Q Consensus       117 ~g~~~~  122 (139)
                      .|+...
T Consensus       561 ~G~~~~  566 (573)
T 3uto_A          561 YGTKEE  566 (573)
T ss_dssp             TEEEEE
T ss_pred             CCcEEE
Confidence            997653

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.86  E-value=0.00011  Score=44.09  Aligned_cols=40  Identities=20%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC--C-c--eeeeEEEEEecCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG--E-S--TSKNFIVNVIYPP   55 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~--~-~--~s~~~~l~v~~~p   55 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+  . .  ......|.|..+|
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~  123 (136)
T 2d9c_A           79 FSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKP  123 (136)
T ss_dssp             CCEEESSCCTTTCEEEEEEEEECCSSSCEEEEECCCEEEEEECCC
T ss_pred             EEEEECCCCHHHCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCC
Confidence            5799999999999999999987532  1 0  1245677776554

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=97.85  E-value=3.4e-05  Score=50.05  Aligned_cols=63  Identities=16%  Similarity=0.087  Sum_probs=45.5

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcC----ee------------------e------ecceEEEEecCCC
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEG----TR------------------F------DEGTVTAKVLQPF  106 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~----~~------------------~------~~~~l~i~~~~~~  106 (139)
                      +.+...+....+..|+++.|.|.+.+.|.+.+.|..    ..                  .      ....|.|.++..+
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  104 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE  104 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence            344455566778899999999999998888888822    10                  0      1236999999999


Q ss_pred             CceeE--EEEccc
Q psy12134        107 SERTL--SVQDKI  117 (139)
Q Consensus       107 d~g~y--~~~n~~  117 (139)
                      |+|.|  .+.|..
T Consensus       105 D~G~Y~C~~~~~~  117 (237)
T 3sob_L          105 DFATYYCQQSYTT  117 (237)
T ss_dssp             GCEEEEEEECSSS
T ss_pred             hCeEEEEeeccCC
Confidence            99999  444443

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=97.83  E-value=4e-05  Score=44.70  Aligned_cols=39  Identities=15%  Similarity=0.255  Sum_probs=30.5

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCC-ceeeeEEEEEec
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIY   53 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~-~~s~~~~l~v~~   53 (139)
                      +.+|.|.+++.+|+|.|.|.+....+. .....+.|.|..
T Consensus        71 ~~SL~I~nl~~~DsG~Y~c~i~~~~~~~~~~~~~~L~V~~  110 (111)
T 2pkd_A           71 NYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIYR  110 (111)
T ss_dssp             TCCEEECSCCGGGCEEEEEEEEESSTTSEEEEEEEEEEEC
T ss_pred             CEEEEECCCCHHHCEEEEEEEEeCCCCceEEEEEEEEEEc
Confidence            488999999999999999998765432 245677777753

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=97.82  E-value=4e-05  Score=43.94  Aligned_cols=61  Identities=11%  Similarity=0.062  Sum_probs=42.9

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------ecc---eEEEEecCCCCceeEEEEc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------DEG---TVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~~~---~l~i~~~~~~d~g~y~~~n  115 (139)
                      .+|.+...+....+.+|+++.|.|.+.+.  +.+.|  ++..+         ..+   .|.|.++..+|.|.|.|.-
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   81 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC   81 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEE
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence            35656555566677899999999999875  45667  33221         122   4999999999999995543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-05
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	4e-05
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-04
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	6e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	0.001
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.001
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.002
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.002
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	0.003
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.003
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	0.003
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.004

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 3e-05
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 20 LDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
          L  V    AG Y C   +      S+   + V
Sbjct: 58 LKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 4e-05
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 13 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
           N   L +D +  + AG YQC  SN +    S +  +++I+ P
Sbjct: 53 QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 95

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 9  IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
          +E   N   L +     +  G Y  +  N +G   +    + V+  P+
Sbjct: 49 VENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA-QVNLTVVDKPD 95

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 5e-04
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
            L L++ T    G Y  +A+N  G++++ + +   +  P
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASA-SIMAAFMDNP 101

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 6e-04
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
          + +   T++ +G Y C       +  S+   + VI  P
Sbjct: 51 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 88

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 34.9 bits (79), Expect = 7e-04
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
          N   L ++RV     G Y   A N+ G        +NV    E
Sbjct: 55 NDYGLTINRVKGDDKGEYTVRAKNSYGTKEE-IVFLNVTRHSE 96

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.6 bits (76), Expect = 0.001
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
          L +  V     G Y C A+N  G+      +V V
Sbjct: 56 LVIKGVKNGDKGYYGCRATNEHGDKYF-ETLVQV 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 10/39 (25%), Positives = 14/39 (35%)

Query: 13 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
           +  SL   R      G YQC A    G ++S+      
Sbjct: 55 KDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)

Query: 17  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
           +L +  V     G Y C   ++          + V  P 
Sbjct: 82  ALRIQNVRFSDEGGYTCFFRDHSY-QEEAAVELKVEDPF 119

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 9   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
           +E   +R    ++    +  G+Y     N +G     N  V VI
Sbjct: 87  VETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG-EDQVNLTVKVI 129

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 50
          +  + V  K AG YQC+A+N  G   S+   + 
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 32.6 bits (73), Expect = 0.003
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 22 RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
          +     +G Y C  +      +SK   + V  P
Sbjct: 55 QANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP 87

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (73), Expect = 0.003
 Identities = 9/46 (19%), Positives = 15/46 (32%)

Query: 6  FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
                     S ++   T + AG Y+C+     G   S    + V
Sbjct: 50 IKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (73), Expect = 0.004
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 28 AGLYQCIASNNIGESTSKNFIVNV 51
          + ++ C A N  G ++S+   V++
Sbjct: 61 STMFSCEAHNLKGLASSRTATVHL 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.36
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.27
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.25
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.22
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.2
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.19
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.18
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.17
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.17
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.17
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.16
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.15
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.13
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.12
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.11
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.11
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.1
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.09
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.07
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.06
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.06
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.05
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.04
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.04
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.03
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.02
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.02
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.0
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.0
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.0
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.99
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.95
d2avga1	110	Cardiac myosin binding protein C, different domain	98.94
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.93
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.93
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.93
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.93
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.92
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.92
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.91
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.91
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.91
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.91
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.9
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.89
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.89
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.88
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.88
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.88
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.87
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.87
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.85
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.84
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.84
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.84
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.81
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.79
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.79
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.78
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.78
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.77
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.77
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.77
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.76
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.75
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.75
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.74
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.74
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.74
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.74
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.73
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.73
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.72
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.72
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.71
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.71
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.7
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.7
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.68
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.66
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.65
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.65
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.64
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.64
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.64
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.64
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.63
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.63
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.62
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.6
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.6
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.6
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.6
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.59
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.58
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.57
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.57
d2avga1	110	Cardiac myosin binding protein C, different domain	98.57
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.57
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.56
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.52
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.5
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.5
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.49
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.47
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.47
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.42
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.29
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.26
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.19
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.17
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.14
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.11
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.1
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.0
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.96
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.95
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.94
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.86
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.83
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.8
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.79
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.76
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.65
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.61
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.59
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.55
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.51
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.5
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.48
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.47
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.47
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.36
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.35
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.31
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.31
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.3
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.27
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.23
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.23
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.2
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.2
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.19
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.18
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.15
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.14
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.11
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.1
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.08
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.06
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.04
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.04
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.03
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.02
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.0
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.0
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	96.99
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	96.96
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.96
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	96.95
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.93
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.91
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.9
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.9
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.89
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	96.82
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.81
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.78
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.72
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	96.72
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	96.71
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.69
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	96.67
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	96.65
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	96.64
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.58
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.56
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	96.56
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.56
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.52
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.52
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.48
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	96.47
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	96.44
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	96.43
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	96.41
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.41
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.39
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.35
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.32
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	96.31
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.29
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	96.2
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.18
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.16
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.14
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.09
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.09
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.07
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	96.05
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.01
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	95.98
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.98
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.96
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	95.95
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	95.93
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	95.92
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	95.89
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	95.86
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	95.86
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.83
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	95.82
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	95.78
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	95.74
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	95.73
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	95.69
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	95.66
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	95.63
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	95.61
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.6
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	95.56
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	95.56
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	95.54
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	95.51
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.45
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	95.45
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	95.43
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	95.39
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	95.36
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	95.35
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	95.3
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	95.3
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	95.22
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	95.2
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	95.18
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	95.17
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	95.17
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	95.15
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	95.1
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	95.1
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	95.09
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	95.07
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	95.03
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.01
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	94.99
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	94.97
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	94.97
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	94.97
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	94.92
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	94.91
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	94.89
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.89
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	94.88
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	94.87
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	94.86
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	94.83
d8faba1	103	Immunoglobulin light chain lambda variable domain,	94.83
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	94.74
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	94.72
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	94.7
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	94.69
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	94.68
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	94.66
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	94.64
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	94.63
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	94.57
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	94.52
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	94.5
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	94.41
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.33
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	94.29
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	94.29
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	94.28
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.26
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	94.26
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	94.24
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.22
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	94.21
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	94.21
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	94.15
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	94.1
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	94.07
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	94.07
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	94.05
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	94.05
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	94.04
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	94.04
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	94.01
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	94.0
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	94.0
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	94.0
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	93.98
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.94
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	93.88
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	93.86
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	93.85
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	93.85
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	93.84
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	93.83
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.8
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.79
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	93.78
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	93.73
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	93.66
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	93.63
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	93.61
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	93.61
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	93.47
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.47
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	93.41
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	93.38
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.36
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	93.35
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	93.34
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	93.33
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	93.33
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	93.3
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	93.3
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	93.27
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	93.27
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	93.26
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	93.19
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	93.12
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	93.07
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	93.01
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	93.0
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	93.0
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	92.97
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	92.94
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	92.93
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	92.88
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	92.88
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	92.8
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	92.78
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	92.78
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	92.74
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	92.72
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	92.72
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	92.71
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	92.69
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	92.66
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	92.62
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	92.61
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	92.56
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	92.56
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	92.55
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	92.42
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	92.4
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	92.35
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	92.33
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	92.28
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	92.26
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	92.02
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	92.0
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	91.92
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	91.86
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	91.84
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	91.84
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	91.82
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	91.8
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	91.79
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	91.79
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	91.79
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	91.74
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	91.71
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	91.67
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	91.67
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	91.64
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	91.6
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	91.59
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	91.58
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	91.57
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	91.57
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	91.57
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	91.53
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	91.5
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	91.44
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	91.42
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	91.37
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	91.31
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	91.14
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.13
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	91.12
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	91.1
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	91.05
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	91.03
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	91.02
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	91.0
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	90.94
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	90.93
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	90.81
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	90.78
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	90.74
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	90.72
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	90.72
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	90.66
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	90.63
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	90.47
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.47
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	90.31
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	90.19
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	90.18
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	90.12
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	89.87
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	89.85
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	89.81
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	89.72
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	89.63
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	89.62
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	89.34
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	89.3
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	89.06
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	88.67
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	88.58
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	88.54
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	88.46
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	88.45
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	88.41
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	88.31
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	88.08
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	87.39
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	87.27
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	87.19
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	87.03
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	86.7
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	85.91
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	85.76
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	85.73
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	85.62
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	85.58
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	85.45
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	85.24
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	85.16
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	85.14
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	84.83
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	84.81
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	84.7
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	84.62
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	84.62
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	84.47
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	84.43
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	84.36
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	84.26
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	84.23
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	84.15
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	83.98
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	83.81
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	83.78
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	83.75
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	83.7
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	83.53
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	83.39
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	83.39
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	83.29
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	83.19
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	83.06
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	83.05
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	83.04
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	83.04
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	82.98
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	82.98
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	82.64
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	82.58
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	82.54
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	82.53
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	82.47
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	82.43
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	82.41
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	82.32
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	82.31
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	82.12
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	81.81
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	81.8
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	81.7
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	81.69
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	81.6
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	81.09
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	80.91
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	80.69
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	80.69
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	80.66
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	80.6
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	80.57
d2j88h1	68	Immunoglobulin heavy chain gamma constant domain 1	80.51
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	80.43
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	80.29
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	80.19
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	80.07
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	80.02

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.1e-12  Score=73.94  Aligned_cols=54  Identities=26%  Similarity=0.463  Sum_probs=47.7

Q ss_pred             eEEEECCEEeeec--------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN--------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|++++..+...        .+.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.++|
T Consensus        34 v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          34 IQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             EEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred             EEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence            7899999887542        47899999999999999999999998876788999999887

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.4e-12  Score=69.86  Aligned_cols=55  Identities=18%  Similarity=0.331  Sum_probs=47.7

Q ss_pred             eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|||+|..+..  ....|.|.+++.+|+|.|.|++.|..+...+..+.|.|.++|.
T Consensus        33 ~~w~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~Pr   89 (89)
T d1f2qa2          33 VIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR   89 (89)
T ss_dssp             EEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEEEEeeeccccccccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCCC
Confidence            679999988754  4578999999999999999999998877678899999998873

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.25  E-value=1.2e-11  Score=68.61  Aligned_cols=53  Identities=15%  Similarity=0.266  Sum_probs=45.4

Q ss_pred             eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134          2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      +.|||++..+..  ....|.|.+++.+|+|.|.|.|.|..+...+..+.|.|.+|
T Consensus        33 ~~W~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          33 VTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             EEEEETTEEEEEESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             EEEEeecccccccccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            789999988765  35789999999999999999999998775677888888764

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.22  E-value=1.9e-11  Score=67.94  Aligned_cols=52  Identities=15%  Similarity=0.259  Sum_probs=44.6

Q ss_pred             eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|||||..+..  ....|.|.+++.+|+|.|+|++.|..+...+..+.|.|.+
T Consensus        35 ~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          35 VTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             EEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEcccccceeccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            789999988754  4578999999999999999999998876567788888875

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.6e-11  Score=69.98  Aligned_cols=54  Identities=28%  Similarity=0.300  Sum_probs=46.1

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|+|++.++...               .+.|.|.+++..|+|.|+|.|+|..|. .+..+.|.|..+|.
T Consensus        33 i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~v~V~~~P~  101 (103)
T d1wwbx_          33 LQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEECCSCCCC
T ss_pred             EEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCE-EEEEEEEEEEeCCC
Confidence            7899999987432               146999999999999999999999998 58889988887774

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.8e-11  Score=68.65  Aligned_cols=53  Identities=13%  Similarity=0.208  Sum_probs=45.4

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|+|++..+...          ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|...|
T Consensus        32 v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~P   94 (101)
T d2cqva1          32 CTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVDKP   94 (101)
T ss_dssp             EEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCE-EECCEEEEEECSC
T ss_pred             EEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCE-EEEEEEEEEEecC
Confidence            7899999876432          257999999999999999999999998 6888999998766

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.7e-11  Score=70.10  Aligned_cols=53  Identities=21%  Similarity=0.226  Sum_probs=44.7

Q ss_pred             eEEEECCEEeeec--------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN--------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|++++.++...              .+.|.|.+++.+|+|.|+|.|+|..|. .+..+.|.|..+|
T Consensus        34 v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~v~V~~~P  100 (105)
T d1wwca_          34 LHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEP  100 (105)
T ss_dssp             EEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEE-EEEEEEECCSCCC
T ss_pred             EEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCE-EEEEEEEEEEeCC
Confidence            7899999886432              256999999999999999999999988 5888888888766

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.18  E-value=4.5e-11  Score=66.29  Aligned_cols=50  Identities=24%  Similarity=0.234  Sum_probs=42.2

Q ss_pred             eEEEECCEEeee-----cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY-----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++.++..     .+..|.|.+++..|+|.|+|.|.|..|. .+..+.|.|+
T Consensus        35 v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~   89 (89)
T d1biha4          35 VVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGD-KYFETLVQVN   89 (89)
T ss_dssp             CEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred             EEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCCE-EEEEEEEEEC
Confidence            789999988753     3477999999999999999999999987 4777777763

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.3e-11  Score=69.77  Aligned_cols=53  Identities=25%  Similarity=0.320  Sum_probs=45.5

Q ss_pred             eEEEECCEEeeec-----------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN-----------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|++++.++...                 .+.|.|.++...|+|.|+|.|+|..|. .+..+.|.|..+|
T Consensus        32 v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~-~~~~i~v~v~~~P  101 (107)
T d1he7a_          32 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP  101 (107)
T ss_dssp             EEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEE-EEEEEEECCCSCT
T ss_pred             EEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCE-EEEEEEEEEEcCC
Confidence            7899999886432                 145999999999999999999999998 5888999988877

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.17  E-value=6e-11  Score=66.79  Aligned_cols=51  Identities=18%  Similarity=0.294  Sum_probs=42.6

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++..+...            ...|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        35 v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          35 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             CEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             EEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            7899999887431            26899999999999999999999999865667888773

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.17  E-value=3.8e-11  Score=67.63  Aligned_cols=50  Identities=20%  Similarity=0.340  Sum_probs=42.6

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|+|.++...           ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|.
T Consensus        37 i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~Vl   97 (97)
T d3dara1          37 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVV   97 (97)
T ss_dssp             EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred             EEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCE-EEEEEEEEEC
Confidence            7899999987432           378999999999999999999999987 5778888773

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.16  E-value=5.4e-11  Score=65.97  Aligned_cols=50  Identities=22%  Similarity=0.337  Sum_probs=42.8

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ++|+|+|.++..      ....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus        33 v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   88 (89)
T d1cs6a4          33 VRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT-VYASAELTVQ   88 (89)
T ss_dssp             EEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCE-EEEEEEEEEE
Confidence            789999988754      3578999999999999999999999987 5677888775

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.2e-11  Score=65.72  Aligned_cols=53  Identities=11%  Similarity=0.144  Sum_probs=46.5

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      +.|++++.........|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...|
T Consensus        31 i~W~~~~~~~~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~-~~~~~~v~V~~~~   83 (84)
T d2nxyb2          31 VQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQ   83 (84)
T ss_dssp             EEEECTTCCEEEESSEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEECEECCC
T ss_pred             eEEEeecccceeeeeeeeeeecccccccEEEEEEEeCCCE-EEEEEEEEEEecC
Confidence            7899999888888889999999999999999999999887 5778888887544

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.4e-11  Score=65.82  Aligned_cols=52  Identities=17%  Similarity=0.057  Sum_probs=42.8

Q ss_pred             CeEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          1 MLVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         1 ~~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      .+.|+|++..+...            ...|.|.+++.+|+|.|+|.+.|..|...+..+.|.|.
T Consensus        27 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          27 DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             CEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             eEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            37899999876421            25799999999999999999999998766778888875

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=1e-10  Score=66.11  Aligned_cols=51  Identities=20%  Similarity=0.237  Sum_probs=43.2

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|++++.++...            .+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus        37 i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~   99 (100)
T d1qz1a3          37 MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLKVFA   99 (100)
T ss_dssp             EEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             EEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCE-EEEEEEEEEEE
Confidence            7899999876431            378999999999999999999999988 57888888864

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.11  E-value=9.4e-11  Score=66.53  Aligned_cols=50  Identities=22%  Similarity=0.214  Sum_probs=42.2

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++.++...           ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus        40 v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~  100 (102)
T d1fhga_          40 VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE-ATCTAELLVE  100 (102)
T ss_dssp             EEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcE-EEEEEEEEEE
Confidence            7899999887432           256999999999999999999999988 5778888775

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.11  E-value=1.1e-10  Score=65.69  Aligned_cols=51  Identities=20%  Similarity=0.045  Sum_probs=42.7

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|+|++.++...           ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..
T Consensus        36 v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~~L~V~~   97 (98)
T d1g1ca_          36 CEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGE-TSSHAFLLVQA   97 (98)
T ss_dssp             EEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             EEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcE-EEEEEEEEEEE
Confidence            7899999887432           147999999999999999999999988 57788888864

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=8.4e-11  Score=65.01  Aligned_cols=50  Identities=24%  Similarity=0.151  Sum_probs=41.9

Q ss_pred             eEEEECCEEeee-----cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY-----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|++..+..     .++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus        35 v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~   89 (89)
T d1gl4b_          35 LVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAM-DQGTATLHVQ   89 (89)
T ss_dssp             EEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEC
T ss_pred             EEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCCE-EEEEEEEEEC
Confidence            789998876543     3578999999999999999999999987 5777777763

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.09  E-value=9.2e-11  Score=65.23  Aligned_cols=50  Identities=16%  Similarity=0.119  Sum_probs=41.7

Q ss_pred             eEEEECCEEeee----cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|+++....    .++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus        37 i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   90 (91)
T d1cs6a3          37 IKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRIIIH   90 (91)
T ss_dssp             EEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCCE-EEEEEEEEEE
Confidence            789997765432    3578999999999999999999999988 5777888775

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.07  E-value=1.4e-10  Score=64.25  Aligned_cols=67  Identities=12%  Similarity=0.013  Sum_probs=56.1

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      |.|...+....+..|+++.|.|.+.|.|.|.+.|  ++..        ...+.|.|..+..+|.|.|  .|.|.+|...
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   80 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVY   80 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEE
Confidence            5667677778888999999999999999999988  4443        3456899999999999999  8899988654

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.5e-10  Score=63.59  Aligned_cols=51  Identities=16%  Similarity=0.189  Sum_probs=40.8

Q ss_pred             eEEEECCEEeeec-CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN-RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|||..+... ...+.|.....+|+|.|+|.|.|..|...+..+.|.|+
T Consensus        34 i~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          34 IVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             EEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEECCEECCCCCCcceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEEC
Confidence            6899999887553 35567777778899999999999998766777777763

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.06  E-value=1.4e-10  Score=64.40  Aligned_cols=69  Identities=13%  Similarity=0.134  Sum_probs=55.3

Q ss_pred             cCCeEEec-CceEeeCCCCeEEEEEEeeeCCCcEEEEc--Cee------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         53 YPPEVSVE-KQWIHTAPDMRAEIICNVYANPPAKRFDE--GTR------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        53 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~~~--~~~------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ++|.+... +....+.+|+++.|.|.+.|.|.|.+.|.  +..      ...+.|.|.++..+|.|.|  .|.|.+|...
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   82 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDT   82 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCCEEE
Confidence            45666543 56778889999999999999999999882  211      2456899999999999999  8899998754

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.05  E-value=9.2e-11  Score=65.95  Aligned_cols=51  Identities=24%  Similarity=0.229  Sum_probs=42.6

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|++++.++...          ...|.|.++...|+|.|+|.|.|..|. .+..+.|.|..
T Consensus        33 v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~   93 (97)
T d1koaa1          33 VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGT-KEEIVFLNVTR   93 (97)
T ss_dssp             EEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEE-EEEEECCEEEC
T ss_pred             EEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCE-EEEEEEEEEee
Confidence            7899999987542          146999999999999999999999987 46777777764

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1e-09  Score=60.16  Aligned_cols=66  Identities=14%  Similarity=0.181  Sum_probs=53.1

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCc-EEEE--cCeee---ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPA-KRFD--EGTRF---DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~--~~~~~---~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      |.|...+....+..|+++.|.|.+.|.|.| .+.|  ++..+   ..+.+.+.....+|.|.|  .|.|.+|..
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~   75 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLA   75 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCCcceEEecCCccccEEEEEEEEcCCCcE
Confidence            567777777888999999999999999987 7878  55543   234677888888999999  899999854

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.04  E-value=6.5e-11  Score=65.86  Aligned_cols=50  Identities=14%  Similarity=0.274  Sum_probs=41.4

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|++++.++...          ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|.
T Consensus        31 v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   90 (91)
T d1tnna_          31 VTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK-QEAEFTLTIQ   90 (91)
T ss_dssp             CEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCB-CCEEEEEECC
T ss_pred             EEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCE-EEEEEEEEEE
Confidence            7899998765331          378999999999999999999999988 4677777765

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.03  E-value=1.4e-10  Score=64.71  Aligned_cols=49  Identities=20%  Similarity=0.198  Sum_probs=39.4

Q ss_pred             eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134          2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   50 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~   50 (139)
                      +.|+++|.++..         ..+.|.|.++..+|+|.|+|.|.|..|...+..+.|.
T Consensus        35 v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~v~l~   92 (94)
T d1biha1          35 YSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFR   92 (94)
T ss_dssp             EEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEEEEEEEEE
Confidence            689999987643         2478999999999999999999999987545555544

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.02  E-value=3.1e-10  Score=63.70  Aligned_cols=69  Identities=13%  Similarity=0.183  Sum_probs=55.3

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      .|.|...+....+.+|+++.|.|.+.+.|.+.+.|  ++..+            ....|.|.++..+|.|.|  .|.|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            36677677777888999999999999999999988  44331            123689999999999999  889998


Q ss_pred             CCCCC
Q psy12134        118 GPGPD  122 (139)
Q Consensus       118 g~~~~  122 (139)
                      |....
T Consensus        81 G~~~~   85 (97)
T d1koaa1          81 GTKEE   85 (97)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            87653

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.02  E-value=1.3e-10  Score=64.87  Aligned_cols=50  Identities=18%  Similarity=0.116  Sum_probs=41.4

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|++++..+...          ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus        34 v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~~l~V~   93 (93)
T d1wiua_          34 ATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ   93 (93)
T ss_dssp             EEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred             EEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCE-EEEEEEEEEC
Confidence            7899998766432          257999999999999999999999988 5777777763

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.3e-10  Score=64.56  Aligned_cols=50  Identities=18%  Similarity=0.093  Sum_probs=40.8

Q ss_pred             eEEEECCEEeee-----cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY-----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      |.|++.+.++..     ..+.|.|.+++.+|+|.|+|.|.|..+. .+.++.|.|.
T Consensus        36 v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~-~~~s~~l~Vy   90 (90)
T d1gsma1          36 VQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHTVQLLVY   90 (90)
T ss_dssp             EEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCc-EEEEEEEEEC
Confidence            789997765421     2478999999999999999999998876 6788888774

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=6.5e-10  Score=63.69  Aligned_cols=52  Identities=27%  Similarity=0.316  Sum_probs=41.1

Q ss_pred             eEEEECCEEeeec------------------CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYN------------------RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~   53 (139)
                      ++|+|++..+...                  .+.|.|.+++.+|+|.|+|.|+|..|.. .+..+.|.|..
T Consensus        35 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          35 YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             EEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             EEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEEe
Confidence            7899998875321                  2579999999999999999999999875 34567777754

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=4.3e-10  Score=63.11  Aligned_cols=51  Identities=20%  Similarity=0.396  Sum_probs=39.6

Q ss_pred             eEEEECC-EEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSK-IELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~-~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|++++ ..+...            .+.|.|.+++.+|+|.|+|.|.|..|...++.+.|.|.
T Consensus        33 v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          33 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             EEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence            7899954 333211            25799999999999999999999998755677888775

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7.6e-10  Score=62.87  Aligned_cols=40  Identities=28%  Similarity=0.274  Sum_probs=34.7

Q ss_pred             eEEEECCEEeeec-------CCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELLYN-------RESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      +.|++++.++...       +..|.|.+++.+|+|.|+|.|.|..+.
T Consensus        37 i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2          37 LQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             CEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            7899999987543       478999999999999999999997754

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.1e-10  Score=64.48  Aligned_cols=39  Identities=18%  Similarity=0.192  Sum_probs=34.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   55 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p   55 (139)
                      ..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..++
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~~~  106 (113)
T d2dava1          68 FEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEECSCCTTSCEEEEEEEECSSCE-EEECCEEEEECCC
T ss_pred             EEEEEccCCHHHCeEEEEEEEeCCCE-EEEEEEEEEEcCC
Confidence            46999999999999999999999998 5888999998654

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=7.2e-10  Score=63.57  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=33.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      ..|.|.+++..|+|.|+|.++|..|. .+..+.|.|..
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~  108 (110)
T d2avga1          72 FELHITDAQPAFTGGYRCEVSTKDKF-DCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEESCCTTCCEEEEEEEEETTEE-EEEEEEEEEES
T ss_pred             EEEEEeccCHHHCcEEEEEEEECCCe-EEEEEEEEEEe
Confidence            56999999999999999999999988 58888998875

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.93  E-value=5.3e-10  Score=62.24  Aligned_cols=68  Identities=7%  Similarity=0.117  Sum_probs=55.1

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      +|.+...+....+..|+++.|.|.+.|.|.|.+.|  ++..+            ....|.|.++..+|.|.|  .|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            56676667778889999999999999999999988  33221            224688999999999999  899999


Q ss_pred             CCCC
Q psy12134        118 GPGP  121 (139)
Q Consensus       118 g~~~  121 (139)
                      |...
T Consensus        82 G~~~   85 (93)
T d1wiua_          82 GEDE   85 (93)
T ss_dssp             EEEE
T ss_pred             CEEE
Confidence            9764

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.93  E-value=1.1e-09  Score=61.44  Aligned_cols=68  Identities=10%  Similarity=0.093  Sum_probs=54.9

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------e--cceEEEEecCCCCceeE--EEEcc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------D--EGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~--~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      +|.|...+....+..|+.+.|.|.+.+.|+|.+.|  ++..+           .  ...|.|.++...|.|.|  .|.|.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   83 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI   83 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEEC
Confidence            56677667778888999999999999999999988  33321           1  13689999999999999  88999


Q ss_pred             cCCCC
Q psy12134        117 IGPGP  121 (139)
Q Consensus       117 ~g~~~  121 (139)
                      .|...
T Consensus        84 ~G~~~   88 (98)
T d1g1ca_          84 AGETS   88 (98)
T ss_dssp             TEEEE
T ss_pred             CcEEE
Confidence            88754

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.3e-10  Score=63.00  Aligned_cols=51  Identities=12%  Similarity=0.145  Sum_probs=42.0

Q ss_pred             eEEEECCEEee----------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELL----------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      ++|+|++..+.          ..++.|.|.+++.+|+|.|+|.+.|..|. ....+.|.|..
T Consensus        35 i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~-~~~~~~L~V~~   95 (101)
T d1iray1          35 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYC-LRIKISAKFVE   95 (101)
T ss_dssp             EEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             EEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCe-EEEEEEEEEEe
Confidence            78999885432          13478999999999999999999999887 46778888864

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.3e-10  Score=61.57  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=41.0

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|++++..+..       ..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus        33 i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~-~~~~~~v~V~   89 (90)
T d1vcaa2          33 FSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-LEKGIQVEIY   89 (90)
T ss_dssp             EEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCE-EEEEEEEEEE
Confidence            789997755422       2367999999999999999999999987 6888888775

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.4e-10  Score=60.37  Aligned_cols=49  Identities=31%  Similarity=0.352  Sum_probs=39.3

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      +.|+|++..+....   .+.+++++|+|.|.|.|.|..|. .+..+.|.|..|
T Consensus        36 v~W~k~g~~~~~~~---~~~~v~~~d~G~Y~C~A~N~~G~-~~~~~~l~V~~P   84 (84)
T d2oz4a3          36 LKCLKDGTFPLPIG---ESVTVTRDLEGTYLCRARSTQGE-VTREVTVNVLSP   84 (84)
T ss_dssp             EEEEETTTEECCTT---SCEECCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred             EEEEEeeccceeee---eeeccccCCCCEEEEEEEcCCCE-EEEEEEEEEECC
Confidence            78999987665433   34578899999999999999987 578888888753

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.92  E-value=6e-10  Score=61.07  Aligned_cols=48  Identities=13%  Similarity=0.123  Sum_probs=41.4

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+++|..+......|.|.+++.+|+|.|+|++.|..   .++.+.|.|.
T Consensus        37 ~~w~~~g~~~~~~~~~l~i~~v~~~dsG~Y~C~a~ns~---~S~~v~l~V~   84 (85)
T d2fcba1          37 IQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTS---LSDPVHLTVL   84 (85)
T ss_dssp             CEEEETTEECTTCCSSEEEEECCGGGCEEEEEECTTSB---CCCCEEEEEE
T ss_pred             EEeecccccccccccceEEeeccccCCcEEEEECCCCc---ccccEEEEEE
Confidence            67999999988888899999999999999999998753   4677788775

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.91  E-value=1.5e-09  Score=59.27  Aligned_cols=47  Identities=19%  Similarity=0.229  Sum_probs=39.6

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+......|.|.+++.+|+|.|+|++.|..   .|+.+.|.|
T Consensus        38 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~s~---~S~~v~L~V   84 (84)
T d1fnla1          38 TQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLST---LSDPVQLEV   84 (84)
T ss_dssp             CEEEETTEEEESSCSEEEESSCCGGGCEEEEEECSSSC---CCCCEEEEE
T ss_pred             EEEeeeceeeeecceeeEecCCcccCCEEEEEEccCCC---ccccEEEEC
Confidence            46889998888888999999999999999999998653   467777765

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=7.3e-10  Score=62.93  Aligned_cols=51  Identities=16%  Similarity=0.034  Sum_probs=39.6

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ++|+|++..+...               ...|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        36 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          36 VTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEE
Confidence            7899987654221               13499999999999999999999988744567777775

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.2e-09  Score=59.37  Aligned_cols=48  Identities=17%  Similarity=0.186  Sum_probs=40.9

Q ss_pred             eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|++++..+...+..|.|.+++.+|+|.|.|++.|..   .++.+.|.|.
T Consensus        34 ~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~~s~---~S~~v~l~V~   81 (82)
T d1f2qa1          34 TKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVN---ESEPVYLEVF   81 (82)
T ss_dssp             CEEEETTEECSCCSSEEEECSCCGGGCEEEEEECTTSS---CCCCEEEEEE
T ss_pred             eeeeeeeeeeecccceeEECCCChhhCCcEEEEecCCC---CcccEEEEEE
Confidence            46889999888888999999999999999999998753   4677788775

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.91  E-value=1.9e-09  Score=59.51  Aligned_cols=68  Identities=12%  Similarity=0.117  Sum_probs=53.3

Q ss_pred             CCeEEecC-ceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee-------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         54 PPEVSVEK-QWIHTAPDMRAEIICNVYANPPAKRFD--EGTR-------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        54 ~p~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~-------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +|.+...+ ....+.+|+++.|.|.+.|.|+|.+.|  ++..       .....|.|.++...|.|.|  .|.|.+|...
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~   81 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKY   81 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEEE
Confidence            35555443 445678999999999999999999888  4433       2456799999999999999  8899988654

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.6e-09  Score=61.17  Aligned_cols=67  Identities=10%  Similarity=0.027  Sum_probs=52.0

Q ss_pred             eEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         56 EVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      .+...+....+..|+++.|.|.+.+.|.+.+.|  ++..+            ....|.|.++..+|.|.|  .+.|.+|.
T Consensus         2 ~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   81 (101)
T d2cqva1           2 QIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS   81 (101)
T ss_dssp             EESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCE
T ss_pred             eEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCE
Confidence            344445566788999999999999999999988  33221            123689999999999999  88999887


Q ss_pred             CCC
Q psy12134        120 GPD  122 (139)
Q Consensus       120 ~~~  122 (139)
                      ...
T Consensus        82 ~~~   84 (101)
T d2cqva1          82 RQA   84 (101)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            654

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=1.7e-09  Score=60.07  Aligned_cols=49  Identities=10%  Similarity=0.137  Sum_probs=37.5

Q ss_pred             eEEEECCEEeeec---------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN---------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|+|+++.+...         ++.|.|.+++..|+|.|+|.|.|..+.. .....+.|
T Consensus        33 v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~-~~~~~i~V   90 (92)
T d1epfa2          33 IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE-INFKDIQV   90 (92)
T ss_dssp             EEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTE-EEEEEEEE
T ss_pred             EEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCE-EEEEEEEE
Confidence            7899999876432         3689999999999999999999976552 33444443

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5.4e-10  Score=62.11  Aligned_cols=70  Identities=11%  Similarity=0.033  Sum_probs=55.9

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee----------eecceEEEEecCCCCce-eE--EEEcccC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR----------FDEGTVTAKVLQPFSER-TL--SVQDKIG  118 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~----------~~~~~l~i~~~~~~d~g-~y--~~~n~~g  118 (139)
                      .|.+...+....+.+|+.+.|.|.+.+.|.|.+.|  ++..          .....|.|.++..+|.| .|  .|.|.+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G   81 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG   81 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCC
Confidence            46777666677888999999999999999999888  3222          12357999999999998 69  7899999


Q ss_pred             CCCCC
Q psy12134        119 PGPDS  123 (139)
Q Consensus       119 ~~~~~  123 (139)
                      ....+
T Consensus        82 ~~~~s   86 (92)
T d2ifga1          82 RAEVS   86 (92)
T ss_dssp             ECCEE
T ss_pred             EEEEE
Confidence            87654

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.89  E-value=2e-09  Score=60.85  Aligned_cols=69  Identities=10%  Similarity=0.103  Sum_probs=55.4

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQD  115 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n  115 (139)
                      .+|.|...+....+..|+++.|.|.+.+.|.+.+.|  ++..+             ....|.|.++...|.|.|  .|.|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            356676667777888999999999999999999988  43331             123688999999999999  8899


Q ss_pred             ccCCCC
Q psy12134        116 KIGPGP  121 (139)
Q Consensus       116 ~~g~~~  121 (139)
                      .+|...
T Consensus        87 ~~G~~~   92 (102)
T d1fhga_          87 SLGEAT   92 (102)
T ss_dssp             TTEEEE
T ss_pred             CCcEEE
Confidence            998754

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.2e-09  Score=58.59  Aligned_cols=58  Identities=10%  Similarity=-0.012  Sum_probs=48.1

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEEcCee----eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFDEGTR----FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+.+|+++.|.|.+.+.|+|.+.|....    .....|.|.++..+|.|.|  .|.|..|...
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~   72 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE   72 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEESSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccceeeeeeeeeeecccccccEEEEEEEeCCCEEE
Confidence            35678999999999999999999993221    3456899999999999999  8899887654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.5e-10  Score=62.00  Aligned_cols=38  Identities=21%  Similarity=0.174  Sum_probs=32.0

Q ss_pred             eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      +.|+|++.++..       .+..|.|.+++.+|+|.|+|.+.|..
T Consensus        39 i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          39 VHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             EEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             EEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            689999876533       35789999999999999999998764

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.4e-10  Score=63.04  Aligned_cols=50  Identities=26%  Similarity=0.331  Sum_probs=38.8

Q ss_pred             eEEEECCEEeeec-----------------CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN-----------------RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v   51 (139)
                      +.|+|++..+...                 .+.|.|.+++.+|+|.|+|.|+|..|.. .+..+.|.|
T Consensus        35 v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~v~v  102 (104)
T d1nbqa2          35 YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  102 (104)
T ss_dssp             EEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             EEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceEEEEEEEEEE
Confidence            7899998876331                 2679999999999999999999999874 244455444

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.87  E-value=6.8e-10  Score=62.28  Aligned_cols=49  Identities=27%  Similarity=0.301  Sum_probs=39.2

Q ss_pred             eEEEECCEEeeec---------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134          2 LVIFFSKIELLYN---------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   50 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~   50 (139)
                      +.|++++..+...         +..|.|..+..+|+|.|+|.|.|..|...+..+.|.
T Consensus        39 v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          39 YRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            7899999887432         356778888999999999999999987556666664

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.4e-09  Score=59.48  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=34.9

Q ss_pred             eEEEECCEEeeec--------CCeEEEcccCCCCCEEEEEEEEcCCCCc
Q psy12134          2 LVIFFSKIELLYN--------RESLDLDRVTLKLAGLYQCIASNNIGES   42 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~   42 (139)
                      +.|++++.++...        ++.|.|.+++.+|+|.|+|.|.|..+..
T Consensus        28 v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~   76 (92)
T d1olza1          28 VFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNK   76 (92)
T ss_dssp             EEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSS
T ss_pred             eeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCE
Confidence            6899999876542        4689999999999999999999988763

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=4.2e-09  Score=59.22  Aligned_cols=69  Identities=16%  Similarity=0.275  Sum_probs=52.4

Q ss_pred             CCeEEecCce--EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EE
Q psy12134         54 PPEVSVEKQW--IHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SV  113 (139)
Q Consensus        54 ~p~~~~~~~~--~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~  113 (139)
                      ||.+...+..  ..+..|+++.|.|.+.|.|.|.+.|  ++..+              ....|.|.++..+|.|.|  .|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            5666544433  3456799999999999999999988  33321              235799999999999999  88


Q ss_pred             EcccCCCCC
Q psy12134        114 QDKIGPGPD  122 (139)
Q Consensus       114 ~n~~g~~~~  122 (139)
                      .|.+|....
T Consensus        83 ~N~~G~~~~   91 (100)
T d1qz1a3          83 ENKAGEQDA   91 (100)
T ss_dssp             EETTEEEEE
T ss_pred             EECCCEEEE
Confidence            999887653

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.84  E-value=3.6e-09  Score=60.25  Aligned_cols=36  Identities=36%  Similarity=0.556  Sum_probs=32.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|.|.++..+|+|.|+|.|.|..|. ....+.|.|.
T Consensus        74 ~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~L~Vl  109 (109)
T d2fdbp2          74 EVLYIRNVTFEDAGEYTCLAGNSIGI-SFHSAWLTVL  109 (109)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEC
T ss_pred             EEEEECCCCHHHCeEEEEEEEECCCE-EEEEEEEEEC
Confidence            67999999999999999999999998 5778888773

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.5e-09  Score=62.56  Aligned_cols=36  Identities=25%  Similarity=0.430  Sum_probs=32.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~  129 (130)
T d1gxea_          94 SIFTVEGAEKEDEGVYTVTVKNPVGE-DQVNLTVKVI  129 (130)
T ss_dssp             EEEECSCCCTTTCEEEEEEEECSSCE-EEEEEEEEEC
T ss_pred             EEEEECcCChhcCEEEEEEEEECCCE-EEEEEEEEEE
Confidence            46999999999999999999999998 5788888875

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.84  E-value=1.5e-09  Score=60.44  Aligned_cols=68  Identities=16%  Similarity=0.111  Sum_probs=54.1

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCc-EEEE--cCee-----------eecceEEEEecCCCCceeE--EEEccc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      .|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|  ++..           ...+.|.|..+..+|.|.|  .|.|.+
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence            3666666777888899999999999999866 5677  3332           1346899999999999999  899999


Q ss_pred             CCCC
Q psy12134        118 GPGP  121 (139)
Q Consensus       118 g~~~  121 (139)
                      |...
T Consensus        82 G~~~   85 (94)
T d1biha1          82 GVAS   85 (94)
T ss_dssp             EEEE
T ss_pred             CEEE
Confidence            9654

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.2e-09  Score=59.70  Aligned_cols=54  Identities=11%  Similarity=0.122  Sum_probs=42.3

Q ss_pred             eEEEECCEEeeec-------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134          2 LVIFFSKIELLYN-------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      +.|++++..+...       .+.|.|..+..+|.|.|+|+|.|..|.. +..+.+.+..++.
T Consensus        39 v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~-~~~~~~~~s~p~~   99 (103)
T d1iama1          39 VVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ-GLELFENTSAPYQ   99 (103)
T ss_dssp             EEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGG-TSCEEEEECCCEE
T ss_pred             EEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCCCCc-cCeEeeeEcCCCE
Confidence            6799999987553       2678999999999999999999998773 5566666665443

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.79  E-value=3.3e-09  Score=57.90  Aligned_cols=63  Identities=11%  Similarity=0.126  Sum_probs=48.7

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE---cCeee--ecceEEEEecCCCCceeEEEEcc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD---EGTRF--DEGTVTAKVLQPFSERTLSVQDK  116 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~---~~~~~--~~~~l~i~~~~~~d~g~y~~~n~  116 (139)
                      +|.+...+....+.+|++++|.|.+.+.|.+..+|   ++...  ....|.|..+..+|+|.|.|+..
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   72 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQTN   72 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSCSEEEESSCCGGGCEEEEEECS
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecceeeEecCCcccCCEEEEEEcc
Confidence            46666777666788999999999999999886543   44432  34689999999999999966543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=7.2e-09  Score=57.41  Aligned_cols=65  Identities=12%  Similarity=0.063  Sum_probs=51.2

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      +.|...++...+.+|+.+.|.|.+.+.|.|.+.|  ++..           ...+.|.|.++...|.|.|  .|.|..|.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   81 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG   81 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCC
Confidence            4455566778889999999999999999999888  3332           1345799999999999999  56776543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=8.2e-09  Score=57.43  Aligned_cols=46  Identities=15%  Similarity=0.249  Sum_probs=35.9

Q ss_pred             eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|+|.++...           ...|.|.+++..|+|.|+|.|.|.     +..+.|.|.
T Consensus        37 v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~-----~~s~~l~V~   93 (94)
T d1pd6a_          37 VKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE-----KCSTELFVK   93 (94)
T ss_dssp             CEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE-----EECCEEEEE
T ss_pred             EEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE-----EEEEEEEEE
Confidence            7899999887542           256999999999999999999763     445566664

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=2.2e-08  Score=54.92  Aligned_cols=62  Identities=16%  Similarity=0.153  Sum_probs=49.2

Q ss_pred             cCceEeeCCCCeEEEEEEee-eCCCcEEEE--cCee-------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         60 EKQWIHTAPDMRAEIICNVY-ANPPAKRFD--EGTR-------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~-~~p~~~~~~--~~~~-------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .+....+.+|+++.|.|.+. +.|.+.+.|  ++..       ...+.|.|.++..+|.|.|  .|.|..|...
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~   81 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQ   81 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCCEEE
Confidence            35567788999999999997 567778888  2222       3467899999999999999  7899988654

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.77  E-value=3.5e-09  Score=60.21  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      +.|+|++..+..          ..+.|.|.+++.+|+|.|+|.+.|..|.
T Consensus        37 v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          37 YRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDF   86 (105)
T ss_dssp             EEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCC
Confidence            689999865432          2468999999999999999999998876

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7.9e-09  Score=57.02  Aligned_cols=60  Identities=12%  Similarity=0.053  Sum_probs=47.1

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      |....+..|+++.|.|.+.+.|++.+.|  ++..+              ....|.|.++..+|.|.|  .+.|..|..
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence            4456778899999999999999999877  33321              123688999999999999  788887754

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.77  E-value=1.3e-09  Score=60.36  Aligned_cols=62  Identities=15%  Similarity=0.127  Sum_probs=49.9

Q ss_pred             cCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         60 EKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .++...+.+|+++.|.|.+.+.|.|.+.|  ++..            .....|.|.++..+|.|.|  .+.|..|...
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   82 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQE   82 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCC
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEE
Confidence            34567888999999999999999999988  2222            1335789999999999999  7888888764

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.76  E-value=5.6e-09  Score=59.41  Aligned_cols=69  Identities=12%  Similarity=0.072  Sum_probs=53.5

Q ss_pred             CCeEEec-CceEeeCCCCeEEEEEEeeeCCCcEEEEcC--ee-------------------------eecceEEEEecCC
Q psy12134         54 PPEVSVE-KQWIHTAPDMRAEIICNVYANPPAKRFDEG--TR-------------------------FDEGTVTAKVLQP  105 (139)
Q Consensus        54 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~--~~-------------------------~~~~~l~i~~~~~  105 (139)
                      +|.+... ++...+..|+++.|.|.+.+.|.|.+.|-+  ..                         .....|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            5666543 567788999999999999999999998821  10                         0124689999999


Q ss_pred             CCceeE--EEEcccCCCCC
Q psy12134        106 FSERTL--SVQDKIGPGPD  122 (139)
Q Consensus       106 ~d~g~y--~~~n~~g~~~~  122 (139)
                      +|.|.|  .|.|.+|....
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~  102 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFH  102 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEE
T ss_pred             HHCeEEEEEEEECCCEEEE
Confidence            999999  78899887653

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.75  E-value=7.6e-09  Score=57.87  Aligned_cols=60  Identities=17%  Similarity=0.140  Sum_probs=48.3

Q ss_pred             ceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         62 QWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ....+..|+++.|.|.+.+.|++.+.|  ++...              ....|.|..+..+|.|.|  .|.|.+|...
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            456677899999999999999998877  33321              234799999999999999  8889888764

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1e-08  Score=56.50  Aligned_cols=47  Identities=15%  Similarity=0.146  Sum_probs=36.6

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|++++.++...            ...|.|.+++.+|+|.|+|.+.|.     +.++.|.|..
T Consensus        31 v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-----~~~a~l~V~~   89 (90)
T d1x44a1          31 VKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG-----QSSAKLSVDL   89 (90)
T ss_dssp             CEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE-----EEEEEEEEEC
T ss_pred             EEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc-----eEEEEEEEEE
Confidence            6899999876432            257999999999999999999763     4556677654

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.74  E-value=2.9e-09  Score=59.58  Aligned_cols=69  Identities=17%  Similarity=0.240  Sum_probs=50.4

Q ss_pred             cCCeEEecCceEeeCC---CCeEEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEE
Q psy12134         53 YPPEVSVEKQWIHTAP---DMRAEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQ  114 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~  114 (139)
                      ++|.+...+....+..   ++++.|.|.+.+.|++.+.|  ++..+           ....|.+..+..+|.|.|  .|.
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence            4567766666555544   47899999999999999988  44331           223466666888999999  889


Q ss_pred             cccCCCC
Q psy12134        115 DKIGPGP  121 (139)
Q Consensus       115 n~~g~~~  121 (139)
                      |.+|...
T Consensus        83 N~~G~~~   89 (97)
T d1cs6a1          83 NARGTVV   89 (97)
T ss_dssp             ETTEEEE
T ss_pred             ECCCEEE
Confidence            9999653

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=9.5e-09  Score=57.73  Aligned_cols=35  Identities=17%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             CeEEEcccC-CCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         16 ESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ..|.|.++. .+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        65 ~~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~~~L~V  100 (101)
T d3b5ha1          65 SELHIENLNMEADPGQYRCNGTSSKGS-DQAIITLRV  100 (101)
T ss_dssp             EEEEECSCCTTTSSEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             EEEEEeccccccCCEEEEEEEEECCCE-EEEEEEEEE
Confidence            579999998 57999999999999988 577788776

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=3.2e-08  Score=55.44  Aligned_cols=51  Identities=12%  Similarity=0.122  Sum_probs=41.0

Q ss_pred             eEEEECCEEeee-----------------cCCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEe
Q psy12134          2 LVIFFSKIELLY-----------------NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~-----------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~   52 (139)
                      |.|+|++..+..                 .+++|.|.+++.+|+|.|+|++.+..|.. .+..+.|.|.
T Consensus        29 I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          29 VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             eeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence            789998876521                 23789999999999999999999888764 4677888875

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.74  E-value=6.5e-09  Score=56.79  Aligned_cols=61  Identities=13%  Similarity=0.164  Sum_probs=46.6

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcE-EEE--cCeee--ecceEEEEecCCCCceeEEEEc
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAK-RFD--EGTRF--DEGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~--~~~~~--~~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      |.+...+....+.+|+.++|.|.+.+.|++. ++|  ++...  ....|.|..+..+|.|.|.|+.
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~~~l~i~~v~~~dsG~Y~C~a   70 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQT   70 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCCSSEEEEECCGGGCEEEEEEC
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccccceEEeeccccCCcEEEEEC
Confidence            4566666666778999999999999988765 444  55443  4468999999999999996653

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.8e-09  Score=58.68  Aligned_cols=62  Identities=13%  Similarity=0.099  Sum_probs=44.6

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEE-EE--cCee--eecceEEEEecCCCCceeEEEEc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKR-FD--EGTR--FDEGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~-~~--~~~~--~~~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      +|.+.+.+....+.+|+.+.|.|.+.+.|.+.. +|  ++..  .....|.|..+..+|.|.|.|..
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a   67 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQH   67 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCSSEEEECSCCGGGCEEEEEEC
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecccceeEECCCChhhCCcEEEEe
Confidence            366666666667789999999999999988765 33  4443  34568999999999999996653

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.5e-08  Score=56.85  Aligned_cols=68  Identities=16%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCc-EEEEc--Cee--------------e----ecceEEEEecC-CCCceeE
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KRFDE--GTR--------------F----DEGTVTAKVLQ-PFSERTL  111 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~~--~~~--------------~----~~~~l~i~~~~-~~d~g~y  111 (139)
                      ||.+...+....+.+|+.+.|.|.+.+.|++ .+.|.  +..              .    ....|.|.++. .+|.|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            6777777777888999999999999999977 56672  110              0    12368888887 5799999


Q ss_pred             --EEEcccCCCC
Q psy12134        112 --SVQDKIGPGP  121 (139)
Q Consensus       112 --~~~n~~g~~~  121 (139)
                        .|.|.+|+..
T Consensus        82 ~C~A~N~~G~~~   93 (101)
T d3b5ha1          82 RCNGTSSKGSDQ   93 (101)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEECCCEEE
Confidence              8999998764

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=5.2e-09  Score=59.21  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=28.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~n~~G~~-~~~~~v~v  102 (105)
T d1nbqa1          68 TGITFKSVTREDTGTYTCMVSEEGGNS-YGEVKVKL  102 (105)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTSSC-EECCEEEC
T ss_pred             ceEEEecccccceeeEEEEEEECCCCE-EEEEEEEE
Confidence            679999999999999999999999884 44444443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=3.7e-08  Score=55.32  Aligned_cols=68  Identities=9%  Similarity=0.064  Sum_probs=52.7

Q ss_pred             CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcCee----------------------eecceEEEEecCCCCceeE-
Q psy12134         55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTR----------------------FDEGTVTAKVLQPFSERTL-  111 (139)
Q Consensus        55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~~~----------------------~~~~~l~i~~~~~~d~g~y-  111 (139)
                      |.+........+.+|+++.|.|.+.+.|.+.+.|....                      .....|.|.++..+|.|.| 
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            44555566678889999999999999999998882111                      1335799999999999999 


Q ss_pred             -EEEcccCCCCC
Q psy12134        112 -SVQDKIGPGPD  122 (139)
Q Consensus       112 -~~~n~~g~~~~  122 (139)
                       .+.|..|....
T Consensus        82 C~a~n~~g~~~~   93 (102)
T d1f97a1          82 CMVSEEGGQNYG   93 (102)
T ss_dssp             EEEEETTSSSEE
T ss_pred             EEEEECCCCEEE
Confidence             78888877653

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.1e-08  Score=55.15  Aligned_cols=70  Identities=10%  Similarity=-0.020  Sum_probs=48.4

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc-EEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccCCCCCCCCcceeeeeCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPA-KRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLRPSAYMADA  134 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~-~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~~~~~~~~  134 (139)
                      ..+.+|+++.|.|.+.+.+++ .+.|  ++...    ....|.|..+..+|.|.|  .+.|..|..  ......+.+-.+
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~--~S~~v~i~V~~~   87 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDY--ESEPLNITVIKA   87 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEE--ECCCEEEEEECS
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccccceEEEeeeeeecCcEEEEEEEeCCCCe--EeeeEEEEEEeC
Confidence            456789999999999876554 4555  55543    346799999999999999  566655432  334444555555


Q ss_pred             C
Q psy12134        135 P  135 (139)
Q Consensus       135 ~  135 (139)
                      |
T Consensus        88 P   88 (89)
T d1f2qa2          88 P   88 (89)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.71  E-value=1.6e-08  Score=55.66  Aligned_cols=58  Identities=7%  Similarity=-0.081  Sum_probs=43.2

Q ss_pred             EeeCCCCeEEEEEEeeeCC-CcEEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANP-PAKRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p-~~~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+.+|+++.|.|.+.+++ ++.+.|  ++...    ....+.|..+..+|.|.|  .+.|..|...
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~   78 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVS   78 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccceeccccccEECccceeccceEEEEEEeCCCCeE
Confidence            4567899999999987654 445666  55542    345799999999999999  6677766443

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.70  E-value=1.4e-08  Score=56.73  Aligned_cols=59  Identities=14%  Similarity=0.170  Sum_probs=48.2

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ...+..|+++.|.|.+.|.|.|.+.|  ++..+             ....|.|.++..+|.|.|  .|.|.+|...
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN   89 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEE
Confidence            34567899999999999999999988  44331             235899999999999999  8899988754

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.70  E-value=1.6e-08  Score=55.60  Aligned_cols=58  Identities=5%  Similarity=-0.049  Sum_probs=43.7

Q ss_pred             EeeCCCCeEEEEEEeeeCC-CcEEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANP-PAKRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p-~~~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+.+|+++.|.|.+.+++ ++.+.|  ++...    ....|.|..+..+|+|.|  .|.|..|...
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~   76 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYS   76 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESSCCEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccccccccccccCccCHHHCCeEEEEEEeCCCCEE
Confidence            4567899999999997664 455666  55442    345799999999999999  6777766543

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=2.2e-08  Score=56.26  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=28.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v   51 (139)
                      ++|.|.+++.+|+|.|.|.+.|..|.. .+..+.|.|
T Consensus        65 ~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred             CEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            679999999999999999999999884 233444444

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=9.4e-09  Score=57.29  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=32.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ..|.|.++..+|+|.|+|.+.|..|...+..+.|.|.
T Consensus        60 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          60 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence            5799999999999999999999998866676788773

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=2.1e-08  Score=55.92  Aligned_cols=61  Identities=13%  Similarity=0.047  Sum_probs=46.4

Q ss_pred             cCceEeeCCCCeEEEEEEeeeCCC-cEEEE---cCeee--------------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         60 EKQWIHTAPDMRAEIICNVYANPP-AKRFD---EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~~p~-~~~~~---~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      .+....+..|+++.|.|.+.+.|+ +.+.|   ++...              ....|.|..+..+|.|.|  .|.|..|.
T Consensus         6 ~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   85 (97)
T d1epfa1           6 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGT   85 (97)
T ss_dssp             ESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTE
T ss_pred             ECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCc
Confidence            344567778999999999999885 67878   22221              124689999999999999  78888875


Q ss_pred             C
Q psy12134        120 G  120 (139)
Q Consensus       120 ~  120 (139)
                      .
T Consensus        86 ~   86 (97)
T d1epfa1          86 Q   86 (97)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2e-08  Score=55.86  Aligned_cols=68  Identities=10%  Similarity=0.026  Sum_probs=50.4

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEE-E--EcCee----------e----ecceEEEEecCCCCceeE--EEE
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKR-F--DEGTR----------F----DEGTVTAKVLQPFSERTL--SVQ  114 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~-~--~~~~~----------~----~~~~l~i~~~~~~d~g~y--~~~  114 (139)
                      .|.|. .++...+..|+++.|.|.+.+.|.|.. +  |+...          .    ..+.|.|.++..+|.|.|  .|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            46665 466778899999999999999886643 2  32111          0    124699999999999999  889


Q ss_pred             cccCCCCC
Q psy12134        115 DKIGPGPD  122 (139)
Q Consensus       115 n~~g~~~~  122 (139)
                      |..|+...
T Consensus        81 N~~G~~~s   88 (96)
T d2c9aa1          81 TEGGVGIS   88 (96)
T ss_dssp             ETTEEEEE
T ss_pred             eCCCeEEE
Confidence            99887543

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.64  E-value=2.8e-09  Score=60.62  Aligned_cols=71  Identities=7%  Similarity=-0.055  Sum_probs=53.4

Q ss_pred             ceEeeCCCCeEEEEEEe-eeCCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcccCCCCCCC
Q psy12134         62 QWIHTAPDMRAEIICNV-YANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDSN  124 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~-~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~  124 (139)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|  ++..            ...+.|.|.++..+|.|.|  .|.|..|+...+.
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV   91 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEEE
Confidence            44677899999999997 6889899988  3321            1345799999999999999  7889998877654


Q ss_pred             Ccceeeee
Q psy12134        125 LRPSAYMA  132 (139)
Q Consensus       125 ~~~~~~~~  132 (139)
                      ....+.+.
T Consensus        92 ~~~~~~l~   99 (105)
T d1cs6a2          92 FSKFSQLS   99 (105)
T ss_dssp             ECCCEEEE
T ss_pred             EeccEEEE
Confidence            44444443

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=1.6e-08  Score=57.66  Aligned_cols=60  Identities=18%  Similarity=0.308  Sum_probs=47.0

Q ss_pred             eeCCCCeEEEEEEee-eCCCcEEEE--cCeee--------------------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         65 HTAPDMRAEIICNVY-ANPPAKRFD--EGTRF--------------------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~-~~p~~~~~~--~~~~~--------------------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      .+..|+++.|.|.+. +.|++.+.|  ++...                    ....|.|.++..+|.|.|  .|.|.+|+
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            456899999999985 789999988  33220                    223688999999999999  88999998


Q ss_pred             CCCCC
Q psy12134        120 GPDSN  124 (139)
Q Consensus       120 ~~~~~  124 (139)
                      ...+.
T Consensus        93 ~~~s~   97 (110)
T d1f97a2          93 AMRSE   97 (110)
T ss_dssp             CEECC
T ss_pred             EEEEE
Confidence            86553

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.6e-09  Score=60.18  Aligned_cols=49  Identities=27%  Similarity=0.314  Sum_probs=38.6

Q ss_pred             eEEEECCEEeeec--------CCeEEEcccCCCCCE-EEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLYN--------RESLDLDRVTLKLAG-LYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G-~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+...        ...|.|.+++.+|.| .|+|.|.|..|. .+..+.|.|
T Consensus        34 v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~-~~~s~~l~V   91 (92)
T d2ifga1          34 AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGR-AEVSVQVNV   91 (92)
T ss_dssp             CCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEE-CCEEECCCC
T ss_pred             EEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCE-EEEEEEEEE
Confidence            6899998765331        367999999999999 799999999987 366666554

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.3e-08  Score=54.52  Aligned_cols=62  Identities=11%  Similarity=-0.043  Sum_probs=46.2

Q ss_pred             ecCceEeeCCCCeEEEEEEee-eCCCcEEEEcCee---------eecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         59 VEKQWIHTAPDMRAEIICNVY-ANPPAKRFDEGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      .......+..|+++.|.|.+. +.|.+.+.|.+..         ...+.|.|.++..+|.|.|  .|.|..|+.
T Consensus         8 ~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~   81 (90)
T d1gsma1           8 PPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF   81 (90)
T ss_dssp             SCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcE
Confidence            333445667899999999885 7888899993211         1345799999999999999  677766543

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.2e-08  Score=55.18  Aligned_cols=67  Identities=10%  Similarity=0.153  Sum_probs=50.4

Q ss_pred             CeEEec-CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------------------ecceEEEEecCCCC
Q psy12134         55 PEVSVE-KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------------------DEGTVTAKVLQPFS  107 (139)
Q Consensus        55 p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------------------~~~~l~i~~~~~~d  107 (139)
                      |.+... .....+..|+++.|.|.+.+.|.+.+.|  ++...                        ....|.|..+..+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            444433 3345678899999999999999999988  33221                        12368999999999


Q ss_pred             cee-E--EEEcccCCCC
Q psy12134        108 ERT-L--SVQDKIGPGP  121 (139)
Q Consensus       108 ~g~-y--~~~n~~g~~~  121 (139)
                      .|. |  .|.|.+|...
T Consensus        82 ~g~~Y~C~A~N~~G~~~   98 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDA   98 (107)
T ss_dssp             GSSCEEEEEECSSCEEE
T ss_pred             CCcEEEEEEEeCCCeEE
Confidence            994 9  8999999754

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.6e-08  Score=55.12  Aligned_cols=66  Identities=12%  Similarity=0.046  Sum_probs=50.6

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcCee----------------------eecceEEEEecCCCCceeE--E
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTR----------------------FDEGTVTAKVLQPFSERTL--S  112 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~~~----------------------~~~~~l~i~~~~~~d~g~y--~  112 (139)
                      +...+....+.+|+++.|.|.+.+.|.|.+.|....                      .....|.|.++..+|.|.|  .
T Consensus         7 V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (105)
T d1nbqa1           7 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCM   86 (105)
T ss_dssp             EECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEE
T ss_pred             EECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEE
Confidence            333444556778999999999999999999882111                      1235789999999999999  8


Q ss_pred             EEcccCCCCC
Q psy12134        113 VQDKIGPGPD  122 (139)
Q Consensus       113 ~~n~~g~~~~  122 (139)
                      +.|..|....
T Consensus        87 a~n~~G~~~~   96 (105)
T d1nbqa1          87 VSEEGGNSYG   96 (105)
T ss_dssp             EEETTSSCEE
T ss_pred             EEECCCCEEE
Confidence            8899888753

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.1e-08  Score=55.94  Aligned_cols=79  Identities=16%  Similarity=0.185  Sum_probs=54.8

Q ss_pred             EecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------------ecceEEEEecCCCCceeE
Q psy12134         51 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------------DEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        51 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------------~~~~l~i~~~~~~d~g~y  111 (139)
                      |+.+|.+....   ....++...+.|.+.|.|+|.+.|  ++..+                 ....|.|.++...|.|.|
T Consensus         1 v~~pP~it~~~---~~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   77 (103)
T d1wwbx_           1 VHFAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY   77 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred             CccCCeeEEcC---CCccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceE
Confidence            34566654221   223578889999999999999988  33331                 123689999999999999


Q ss_pred             --EEEcccCCCCCCCCcceeeeeCCC
Q psy12134        112 --SVQDKIGPGPDSNLRPSAYMADAP  135 (139)
Q Consensus       112 --~~~n~~g~~~~~~~~~~~~~~~~~  135 (139)
                        .|.|.+|+...   ...+.+.+.|
T Consensus        78 ~C~a~N~~G~~~~---~~~v~V~~~P  100 (103)
T d1wwbx_          78 TLIAKNEYGKDEK---QISAHFMGWP  100 (103)
T ss_dssp             EEEEECSSCEEEE---EEEECCSCCC
T ss_pred             EEEEeccCCEEEE---EEEEEEEeCC
Confidence              89999888743   3444444444

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.8e-08  Score=54.09  Aligned_cols=58  Identities=7%  Similarity=-0.126  Sum_probs=46.1

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+..|+++.|.|.+.+.|+|.+.|  ++..         .....|.|..+..+|.|.|  .|.|..|...
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~   81 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLE   81 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEE
Confidence            3446799999999999999999988  2211         1235799999999999999  7888887654

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.6e-09  Score=59.21  Aligned_cols=60  Identities=13%  Similarity=0.046  Sum_probs=46.4

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeeeecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRFDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      +....+.+|+.+.|.|.+.|.|.|.+.|  ++... ...+.+..++.+|.|.|  .|.|.+|+..
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~-~~~~~~~~v~~~d~G~Y~C~A~N~~G~~~   74 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP-LPIGESVTVTRDLEGTYLCRARSTQGEVT   74 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEE-CCTTSCEECCGGGCEEEEEEEEETTEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccc-eeeeeeeccccCCCCEEEEEEEcCCCEEE
Confidence            3456778899999999999999999988  33322 22334567889999999  8999998653

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.5e-09  Score=58.21  Aligned_cols=60  Identities=17%  Similarity=0.232  Sum_probs=47.3

Q ss_pred             EeeCCCCeEEEEEEee-eCCCcEEEE--cCeee-------------------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         64 IHTAPDMRAEIICNVY-ANPPAKRFD--EGTRF-------------------DEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~~p~~~~~~--~~~~~-------------------~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      ..+..|+++.|.|.+. +.|++.+.|  ++...                   ....|.|..+..+|.|.|  .|.|.+|+
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   91 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT   91 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence            3566899999999984 789998888  33221                   134688999999999999  88999998


Q ss_pred             CCCC
Q psy12134        120 GPDS  123 (139)
Q Consensus       120 ~~~~  123 (139)
                      ...+
T Consensus        92 ~~~s   95 (104)
T d1nbqa2          92 PMTS   95 (104)
T ss_dssp             CEEC
T ss_pred             eEEE
Confidence            8755

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.3e-09  Score=61.04  Aligned_cols=52  Identities=13%  Similarity=0.180  Sum_probs=41.7

Q ss_pred             eEEEECCEEeeec----------------CCeEEEcccCCCC-CEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134          2 LVIFFSKIELLYN----------------RESLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNVIYP   54 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------------~~~L~i~~v~~~d-~G~Y~C~~~n~~~~~~s~~~~l~v~~~   54 (139)
                      +.|++++..+...                .+.|.|.++...| +|.|+|.|.|..|. .+..+.|.|...
T Consensus        39 v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~-~~~~~~L~V~~~  107 (115)
T d2crya1          39 IAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQGS  107 (115)
T ss_dssp             EEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCE-EEEEECCCCSCS
T ss_pred             EEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCe-EEEEEEEEEECC
Confidence            6799988776321                1469999999998 79999999999998 588888888643

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.7e-08  Score=55.80  Aligned_cols=48  Identities=10%  Similarity=0.144  Sum_probs=37.8

Q ss_pred             eEEEECCEEeeec----------------------CCeEEEcccCCCCCE-EEEEEEEcCCCCceeeeEEEE
Q psy12134          2 LVIFFSKIELLYN----------------------RESLDLDRVTLKLAG-LYQCIASNNIGESTSKNFIVN   50 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------------------~~~L~i~~v~~~d~G-~Y~C~~~n~~~~~~s~~~~l~   50 (139)
                      +.|+++|..+...                      .+.|.|.+++.+|.| .|+|.|.|..|. .+..+.|.
T Consensus        34 i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~-~~~~i~L~  104 (107)
T d1iray3          34 AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI-DAAYIQLI  104 (107)
T ss_dssp             EEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECSSCE-EEEEEEEE
T ss_pred             EEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeCCCe-EEEEEEEE
Confidence            7899998765311                      157999999999999 599999999987 46666554

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=9.1e-08  Score=54.69  Aligned_cols=74  Identities=8%  Similarity=-0.207  Sum_probs=52.2

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCC---CcEEEE--cCee---------e------------ecceEEEEecCCCCceeE-
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANP---PAKRFD--EGTR---------F------------DEGTVTAKVLQPFSERTL-  111 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p---~~~~~~--~~~~---------~------------~~~~l~i~~~~~~d~g~y-  111 (139)
                      ..++...+..|+++.|.|.+.+.|   .|.+.|  ++..         .            ....|.|.++..+|.|.| 
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            345556778999999999999988   467888  2111         0            123588999999999999 


Q ss_pred             -EEEcccCCCCCCCCcceeeeeCCC
Q psy12134        112 -SVQDKIGPGPDSNLRPSAYMADAP  135 (139)
Q Consensus       112 -~~~n~~g~~~~~~~~~~~~~~~~~  135 (139)
                       .|.|..|....   ...+.+.++|
T Consensus        85 C~a~N~~G~~~~---~~~L~V~~~~  106 (113)
T d2dava1          85 CEVTYKDKFDSC---SFDLEVHEST  106 (113)
T ss_dssp             EEEECSSCEEEE---CCEEEEECCC
T ss_pred             EEEEeCCCEEEE---EEEEEEEcCC
Confidence             78999887543   3344444433

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.9e-09  Score=62.14  Aligned_cols=74  Identities=18%  Similarity=0.229  Sum_probs=53.4

Q ss_pred             EEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCC-cEEEE--cCeee------------------ecceEEEEecCCCC
Q psy12134         49 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP-AKRFD--EGTRF------------------DEGTVTAKVLQPFS  107 (139)
Q Consensus        49 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~~--~~~~~------------------~~~~l~i~~~~~~d  107 (139)
                      |.|..+|.+... ....+.+|+.+.|.|.+.+.|+ +.+.|  ++...                  ....|.|.++...|
T Consensus         2 L~V~~Pp~i~~~-~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIISST-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEEEE-CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEecC-CCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            668888887643 3456788999999999998654 45677  22221                  01257888888888


Q ss_pred             -ceeE--EEEcccCCCCCC
Q psy12134        108 -ERTL--SVQDKIGPGPDS  123 (139)
Q Consensus       108 -~g~y--~~~n~~g~~~~~  123 (139)
                       .|.|  .|.|.+|+...+
T Consensus        81 ~~G~Y~C~A~N~~G~~~~~   99 (115)
T d2crya1          81 FQTIYNCTAWNSFGSDTEI   99 (115)
T ss_dssp             HHSCEEEEEECSSCEEEEE
T ss_pred             CCeEEEEEEEECCCeEEEE
Confidence             6889  899999987544

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.6e-08  Score=55.64  Aligned_cols=62  Identities=8%  Similarity=-0.149  Sum_probs=46.2

Q ss_pred             cCceEeeCCCCeEEEEEEeeeCC-CcEEEE--cCeee-----------------ecceEEEEecCCCCceeE--EEEccc
Q psy12134         60 EKQWIHTAPDMRAEIICNVYANP-PAKRFD--EGTRF-----------------DEGTVTAKVLQPFSERTL--SVQDKI  117 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~--~~~~~-----------------~~~~l~i~~~~~~d~g~y--~~~n~~  117 (139)
                      .++...+..|+++.|.|.+.+.| +|.+.|  ++...                 ....|.|.++..+|.|.|  .|.|..
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   88 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQS   88 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCC
Confidence            34455777999999999999998 478888  22110                 112488889999999999  788888


Q ss_pred             CCCC
Q psy12134        118 GPGP  121 (139)
Q Consensus       118 g~~~  121 (139)
                      |...
T Consensus        89 G~~~   92 (104)
T d2aw2a1          89 NLIE   92 (104)
T ss_dssp             EEEE
T ss_pred             CeEE
Confidence            7543

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=8.8e-08  Score=54.52  Aligned_cols=67  Identities=10%  Similarity=-0.185  Sum_probs=50.8

Q ss_pred             eEEecCceEeeCCCCeEEEEEEeeeCC---CcEEEE--cCee---------e------------ecceEEEEecCCCCce
Q psy12134         56 EVSVEKQWIHTAPDMRAEIICNVYANP---PAKRFD--EGTR---------F------------DEGTVTAKVLQPFSER  109 (139)
Q Consensus        56 ~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~~~~~--~~~~---------~------------~~~~l~i~~~~~~d~g  109 (139)
                      .|...++...+..|+++.|.|.+.+.|   .|.+.|  ++..         .            ....|.|.++...|.|
T Consensus         6 ~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   85 (110)
T d2avga1           6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG   85 (110)
T ss_dssp             SEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCE
T ss_pred             EeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCc
Confidence            355556667888999999999999988   467788  2110         0            1236899999999999


Q ss_pred             eE--EEEcccCCCCC
Q psy12134        110 TL--SVQDKIGPGPD  122 (139)
Q Consensus       110 ~y--~~~n~~g~~~~  122 (139)
                      .|  .+.|..|....
T Consensus        86 ~Y~C~a~N~~G~~~~  100 (110)
T d2avga1          86 GYRCEVSTKDKFDCS  100 (110)
T ss_dssp             EEEEEEEETTEEEEE
T ss_pred             EEEEEEEECCCeEEE
Confidence            99  88899887754

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=9.8e-08  Score=52.63  Aligned_cols=47  Identities=17%  Similarity=0.097  Sum_probs=35.9

Q ss_pred             eEEEECCEEeee--------------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY--------------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~--------------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +.|++++..+..                    ....|.|.+++.+|+|.|.|++.|..+   +..+.|.|
T Consensus        26 v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~---t~~~~l~V   92 (93)
T d1ccza1          26 VLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYV   92 (93)
T ss_dssp             EEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS---CEEEEEEE
T ss_pred             EEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCCc---EEEEEEEE
Confidence            789998876521                    136899999999999999999987654   34566665

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2e-08  Score=58.59  Aligned_cols=61  Identities=13%  Similarity=0.134  Sum_probs=48.6

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCCcEEEEcC--eee-----------------------------------------ecce
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPPAKRFDEG--TRF-----------------------------------------DEGT   97 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~--~~~-----------------------------------------~~~~   97 (139)
                      +....+..|+++.|.|.+.|.|.|.+.|.+  ...                                         ....
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   95 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI   95 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEE
Confidence            456778899999999999999999998821  100                                         1135


Q ss_pred             EEEEecCCCCceeE--EEEcccCCCC
Q psy12134         98 VTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        98 l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      |.|.++..+|.|.|  .|.|.+|...
T Consensus        96 L~I~~v~~~D~G~Y~C~a~N~~G~~~  121 (130)
T d1gxea_          96 FTVEGAEKEDEGVYTVTVKNPVGEDQ  121 (130)
T ss_dssp             EECSCCCTTTCEEEEEEEECSSCEEE
T ss_pred             EEECcCChhcCEEEEEEEEECCCEEE
Confidence            89999999999999  8899998764

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.52  E-value=5.9e-09  Score=57.45  Aligned_cols=46  Identities=17%  Similarity=0.040  Sum_probs=35.4

Q ss_pred             eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      +.|+|+|.++...          ...|.|.+++.+|+|.|+|.+.|..     .++.|.|.
T Consensus        32 v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~-----~sa~l~V~   87 (89)
T d1tiua_          32 GQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK-----SAANLKVK   87 (89)
T ss_dssp             CBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB-----CCEEEEEE
T ss_pred             EEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE-----EEEEEEEE
Confidence            6799999876432          2679999999999999999997743     34556654

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.4e-07  Score=52.29  Aligned_cols=58  Identities=3%  Similarity=-0.035  Sum_probs=44.0

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ...+.+|+++.|.|.+.+ +++.+.|  ++..+          ....|.|..+..+|.|.|  .|.|.+|...
T Consensus        12 ~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~   83 (96)
T d1l6za2          12 NTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR   83 (96)
T ss_dssp             CSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEE
T ss_pred             ceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeE
Confidence            345678999999999876 4566666  44432          235799999999999999  8888877654

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1e-07  Score=53.87  Aligned_cols=69  Identities=20%  Similarity=0.327  Sum_probs=50.0

Q ss_pred             EecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------------ecceEEEEecCCCCceeE-
Q psy12134         51 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------------DEGTVTAKVLQPFSERTL-  111 (139)
Q Consensus        51 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------------~~~~l~i~~~~~~d~g~y-  111 (139)
                      |+++|.+.....   ...+....+.|.+.|.|+|.+.|  ++..+                ....|.|.++..+|.|.| 
T Consensus         2 V~~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           2 VYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             EEcCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            667776643221   23456778899999999999988  33321                123588999999999999 


Q ss_pred             -EEEcccCCCCC
Q psy12134        112 -SVQDKIGPGPD  122 (139)
Q Consensus       112 -~~~n~~g~~~~  122 (139)
                       .|.|.+|....
T Consensus        79 C~a~N~~G~~~~   90 (105)
T d1wwca_          79 LIAKNPLGTANQ   90 (105)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEcCCCEEEE
Confidence             89999887753

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=7e-08  Score=54.73  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=35.9

Q ss_pred             eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134          2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus         2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      +.|+|++.++...            .+.|.|.....+|.|.|+|+|.|..+.. ...+.+.+..
T Consensus        37 i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~-~~~~~~~~s~   99 (106)
T d1zxqa1          37 LFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR-GGNIFHKHSA   99 (106)
T ss_dssp             EEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGG-TCCEEEEECC
T ss_pred             EEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCC-CCeeEecccC
Confidence            6899999887532            1456776667778889999999987652 3445555543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1e-06  Score=49.46  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeee-CCCcE--EEE--cCeee---------ecceEEEEecCCCCceeE--EEEcc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAK--RFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDK  116 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~  116 (139)
                      .++.+.+.+....+..|+.++|.|.+.+ .|.+.  +.|  ++..+         ....|.|.....+|.|.|  .|.|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~   82 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELD   82 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeC
Confidence            3566666666667789999999999986 45553  456  33322         234688888889999999  88999


Q ss_pred             cCCCCC
Q psy12134        117 IGPGPD  122 (139)
Q Consensus       117 ~g~~~~  122 (139)
                      +|+...
T Consensus        83 ~g~~~~   88 (103)
T d1iama1          83 LRPQGL   88 (103)
T ss_dssp             CGGGTS
T ss_pred             CCCccC
Confidence            887654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.3e-08  Score=55.50  Aligned_cols=61  Identities=11%  Similarity=0.040  Sum_probs=46.8

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCC-cEEEE--cCee---------eecceEEEEecCCCCceeEEEE
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPP-AKRFD--EGTR---------FDEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      .|.+...+....+.+|+++.|.|.+.+.|+ +.+.|  ++..         ..+..|.|.++..+|.|.|.|.
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   78 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCY   78 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEE
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEE
Confidence            466666667778889999999999998775 47778  2221         2456899999999999999553

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=9.3e-08  Score=52.83  Aligned_cols=57  Identities=11%  Similarity=0.036  Sum_probs=43.7

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCee----------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTR----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..+.+|+++.|.|.+.+ |++.+.|  ++..          ..++.|.|.++..+|.|.|  .|.|..|...
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             eeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence            45678999999999998 5556655  3332          2346899999999999999  7888877643

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.29  E-value=2.9e-07  Score=53.36  Aligned_cols=40  Identities=18%  Similarity=0.218  Sum_probs=34.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   56 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~   56 (139)
                      ..|.|.+++.+|+|.|.|.+.+..+. .+..+.|.|..|+.
T Consensus        81 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~v~L~V~~P~~  120 (126)
T d1pkoa_          81 VALRIQNVRFSDEGGYTCFFRDHSYQ-EEAAVELKVEDPFY  120 (126)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECTTT
T ss_pred             EEEEEEEEchhHCeEEEEEEEECCCE-EEEEEEEEEeCCCE
Confidence            57999999999999999999987665 57788899987653

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.26  E-value=3.8e-07  Score=52.04  Aligned_cols=57  Identities=7%  Similarity=-0.012  Sum_probs=44.6

Q ss_pred             eeCCCCeEEEEEEe-eeCCCcEEEEcCee------------------eecceEEEEecCCCCce---eE--EEEcccCCC
Q psy12134         65 HTAPDMRAEIICNV-YANPPAKRFDEGTR------------------FDEGTVTAKVLQPFSER---TL--SVQDKIGPG  120 (139)
Q Consensus        65 ~~~~g~~~~l~C~~-~~~p~~~~~~~~~~------------------~~~~~l~i~~~~~~d~g---~y--~~~n~~g~~  120 (139)
                      .+.+|+++.|.|.+ .|.|+|.+.|....                  ...+.|.|.+++..|.|   .|  .|.|.+|..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            44689999999997 89999999992211                  13468999999988766   68  899998876


Q ss_pred             C
Q psy12134        121 P  121 (139)
Q Consensus       121 ~  121 (139)
                      .
T Consensus        93 ~   93 (111)
T d1biha2          93 E   93 (111)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.6e-06  Score=48.93  Aligned_cols=55  Identities=11%  Similarity=0.068  Sum_probs=42.5

Q ss_pred             CCCCeEEEEEEeeeCCCcEEEE--cCeee-------------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         67 APDMRAEIICNVYANPPAKRFD--EGTRF-------------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      ..++...+.|.+.|.|+|.+.|  ++..+                   ....|.|.++...|.|.|  .|.|.+|...
T Consensus        13 ~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~   90 (107)
T d1he7a_          13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS   90 (107)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEE
Confidence            3456667788999999999988  44331                   123588999999999999  8999999764

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.1e-06  Score=48.09  Aligned_cols=53  Identities=15%  Similarity=0.073  Sum_probs=39.6

Q ss_pred             cCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeEEE
Q psy12134         60 EKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y~~  113 (139)
                      +++...+..|+++.|.|.+. .|++.+.|  ++...              ....|.|.++..+|.|.|.|
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   74 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSV   74 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEE
T ss_pred             CCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEE
Confidence            34567788999999999995 57777777  33321              12379999999999999944

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.14  E-value=9.8e-07  Score=50.26  Aligned_cols=41  Identities=17%  Similarity=0.021  Sum_probs=32.3

Q ss_pred             eEEEECCEEeee--------------cCCeEEEcccCCCCCE---EEEEEEEcCCCCc
Q psy12134          2 LVIFFSKIELLY--------------NRESLDLDRVTLKLAG---LYQCIASNNIGES   42 (139)
Q Consensus         2 ~~W~~~~~~~~~--------------~~~~L~i~~v~~~d~G---~Y~C~~~n~~~~~   42 (139)
                      +.|+|++..+..              .+..|.|.+++..|+|   .|.|.|.|..|..
T Consensus        35 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          35 ITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             EEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             EEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            789997654321              2478999999999877   7999999998773

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.8e-06  Score=46.76  Aligned_cols=51  Identities=8%  Similarity=0.038  Sum_probs=37.9

Q ss_pred             ceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeEEE
Q psy12134         62 QWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y~~  113 (139)
                      ....+..|+++.|.|.+. .|++.+.|  ++..+             ....|.|.++...|.|.|.|
T Consensus        14 ~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c   79 (94)
T d1pd6a_          14 PAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC   79 (94)
T ss_dssp             SEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEE
T ss_pred             CCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEE
Confidence            345678999999999985 47777767  44331             12369999999999999943

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=1.1e-06  Score=49.67  Aligned_cols=37  Identities=22%  Similarity=0.211  Sum_probs=29.0

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      +++|+|.+++.+|+|.|+|++.+..+...+..+.|.|
T Consensus        70 ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             cccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            4889999999999999999998765443455566655

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.4e-05  Score=43.95  Aligned_cols=51  Identities=16%  Similarity=0.215  Sum_probs=37.7

Q ss_pred             eEEEECCEEeeec---------CCeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEe
Q psy12134          2 LVIFFSKIELLYN---------RESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~   52 (139)
                      +.|+|+|......         ...+.|.+|+..|+|.|.|...++.. +..|+.+.|.|.
T Consensus        34 f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          34 YQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             EEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             EEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEEEEe
Confidence            5688887653211         25799999999999999999887642 335788888775

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=8.8e-06  Score=45.71  Aligned_cols=59  Identities=14%  Similarity=0.077  Sum_probs=39.8

Q ss_pred             EeeCCCCeEEEEEEeee-CC--CcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         64 IHTAPDMRAEIICNVYA-NP--PAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~-~p--~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      ..+..|+.+.|.|.+.+ .|  .+.+.|  ++..+              ....|.+.....+|.|.|  .|.|.+|....
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~   91 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG   91 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence            45678999999999986 44  345677  33331              112456666667788899  88888876543

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.95  E-value=6.1e-07  Score=49.04  Aligned_cols=53  Identities=9%  Similarity=-0.049  Sum_probs=40.1

Q ss_pred             cCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeEEE
Q psy12134         60 EKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y~~  113 (139)
                      +.++..+.+|+++.|.|.+. .|.+.+.|  ++..+            ....|.|.++..+|+|.|.|
T Consensus         7 ~l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c   73 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSF   73 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBCS-SSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECC
T ss_pred             CCcCEEEeCCCcEEEEEEEC-CCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEE
Confidence            44567888999999999984 67777778  33321            22479999999999999943

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=7.4e-06  Score=45.45  Aligned_cols=37  Identities=22%  Similarity=0.189  Sum_probs=30.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~   52 (139)
                      ..+.|.+|+..|+|.|.|...++.. +..|+.+.|.|.
T Consensus        62 a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~VT   99 (99)
T d1ucta1          62 PEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVT   99 (99)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEE
T ss_pred             EEEEecCCCHHHCceEEEEEECCCcccCCCCCEEEEeC
Confidence            5699999999999999999988754 335777877763

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1e-05  Score=46.24  Aligned_cols=36  Identities=25%  Similarity=0.450  Sum_probs=30.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~   52 (139)
                      ..|+|.+++.+|+|.|.|.+.+..+. .+..+.|.|.
T Consensus        88 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~  123 (124)
T d1eaja_          88 ASINVTNLQLSDIGTYQCKVKKAPGV-ANKKIHLVVL  123 (124)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEEcccEEccCEEEEEEEEECCCe-EEeEEEEEEE
Confidence            47999999999999999999987665 4677777764

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=9.1e-06  Score=45.49  Aligned_cols=57  Identities=5%  Similarity=-0.123  Sum_probs=44.6

Q ss_pred             eeCCCCeEEEEE------EeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134         65 HTAPDMRAEIIC------NVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP  121 (139)
Q Consensus        65 ~~~~g~~~~l~C------~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~  121 (139)
                      .+..|....|.|      .+.++|+|.+.|  ++..         ..++.|.|.++..+|.|.|  .|.|..|...
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEE
Confidence            456799999999      567888888888  4433         2456899999999999999  7788776543

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4.1e-05  Score=43.03  Aligned_cols=53  Identities=11%  Similarity=0.093  Sum_probs=34.9

Q ss_pred             eEEEECCEEeeec--------------CCeEEEcccCCCCC-EEEEEEEEcCCCCc------eeeeEEEEEecCC
Q psy12134          2 LVIFFSKIELLYN--------------RESLDLDRVTLKLA-GLYQCIASNNIGES------TSKNFIVNVIYPP   55 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------------~~~L~i~~v~~~d~-G~Y~C~~~n~~~~~------~s~~~~l~v~~~p   55 (139)
                      ++|++++.++...              .+.|.+. ++++|. ..|+|+|++..+..      .+....|.|++.|
T Consensus        36 i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~-~~~~D~g~~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          36 IDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT-PVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             EEEEETTEEEEEEECCSCCSSCCCEEEEEEEEEC-CCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             EEEeccCceeeccccccccccCCcceeeEEEEcc-CChHHCCcEEEEEEEcCcCCccccccccceeEEeEEEeCC
Confidence            6799999876431              1345554 444555 58999999876331      3456668888765

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.9e-05  Score=42.66  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=20.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .+|+|.++..+|+|.|.|.+.+
T Consensus        67 ~sL~I~~l~~~DsG~Y~C~v~~   88 (97)
T d2nxyb1          67 FPLIIKNLKIEDSDTYICEVED   88 (97)
T ss_dssp             CCEEECSCCGGGCEEEEEEETT
T ss_pred             EEEEECCCChHHCEEEEEEEec
Confidence            4699999999999999999964

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=7e-06  Score=45.77  Aligned_cols=59  Identities=3%  Similarity=-0.138  Sum_probs=45.8

Q ss_pred             EeeCCCCeEEEEEEee-eCCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134         64 IHTAPDMRAEIICNVY-ANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD  122 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~-~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~  122 (139)
                      ..+..|+.+.|.|.+. +.|.+.+.|  ++..            ...+.|.|.++..+|.|.|  .+.|..|..+.
T Consensus        12 ~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   87 (101)
T d1iray1          12 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI   87 (101)
T ss_dssp             EEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEE
Confidence            3456799999999885 678888888  2211            2456899999999999999  78898887654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=4.8e-05  Score=43.14  Aligned_cols=37  Identities=14%  Similarity=0.219  Sum_probs=26.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEe
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI   52 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~   52 (139)
                      .+|.|.+++..|+|.|.|.+.++.+.. ....+.|.|.
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            569999999999999999998865322 3445666654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=9.7e-05  Score=42.37  Aligned_cols=58  Identities=10%  Similarity=0.166  Sum_probs=42.8

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------e-----------------------------e
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR------F-----------------------------D   94 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------~-----------------------------~   94 (139)
                      +|.+.+.|..+.+.+|++++|.|.+.......++|-    +..      +                             .
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            366777777788899999999999876666566661    110      0                             0


Q ss_pred             cceEEEEecCCCCceeE
Q psy12134         95 EGTVTAKVLQPFSERTL  111 (139)
Q Consensus        95 ~~~l~i~~~~~~d~g~y  111 (139)
                      ...|.|.++..+|.|.|
T Consensus        81 ~~~L~I~~~~~~Dsg~Y   97 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYY   97 (122)
T ss_dssp             EEEEEESSCCGGGCEEE
T ss_pred             EeEEEEcccccCCCEEE
Confidence            12589999999999999

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00026  Score=39.18  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=22.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGE   41 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~   41 (139)
                      .+|.|.+++.+|+|.|.|.+.+..+.
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~V~~~~~~   90 (105)
T d1dr9a1          65 LSIVILALRPSDEGTYECVVLKYEKD   90 (105)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEECCTT
T ss_pred             EEEEECcCChHHCeEEEEEEEeCCCC
Confidence            67999999999999999999865433

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00027  Score=38.47  Aligned_cols=61  Identities=11%  Similarity=0.102  Sum_probs=41.2

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcE-EEEcCee--------eecceEEEEecCCCCceeEEEEc
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-RFDEGTR--------FDEGTVTAKVLQPFSERTLSVQD  115 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~~~~~--------~~~~~l~i~~~~~~d~g~y~~~n  115 (139)
                      +|.+.+.+.. .+..|.+|+|.|......... .++++..        .....+.|..+...|.|+|.|.-
T Consensus         4 kPsLsa~P~~-~V~~G~~VTL~C~~~~~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           4 TPTLSVHPGP-EVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CCEEEEESCS-EEETTCEEEEEEECSSSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCEEEEeCCC-cccCCCcEEEEECCCCCCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEe
Confidence            5777776654 567899999999976432222 2333322        12346899999999999996643

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.7e-05  Score=42.32  Aligned_cols=50  Identities=12%  Similarity=0.029  Sum_probs=36.6

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------------------ecceEEEEecCCCCceeEEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------------------DEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------------------~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      .....|.+++|.|... .|.+.+.|  ++...                      ..+.|.|.++..+|+|.|.|+
T Consensus         5 v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~   78 (93)
T d1ccza1           5 IYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME   78 (93)
T ss_dssp             EEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEE
T ss_pred             EEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEE
Confidence            3556899999999875 46667777  22210                      235799999999999999655

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00021  Score=37.25  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=25.3

Q ss_pred             EEEECCEEeeecC-----CeEEEcccCCCCCEEEEEEEEc
Q psy12134          3 VIFFSKIELLYNR-----ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus         3 ~W~~~~~~~~~~~-----~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      +|.|+|.++..+.     .++.|..  .+++|.|.|...+
T Consensus        32 rW~K~gkvl~ed~~~~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          32 RWLKGGVVLKEDALPGQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EEESSSEEEECTTCCCSEEEEEECG--GGCCEEEEEEEES
T ss_pred             EEeeCCEEccccCCCCCceEEEEec--CCCCceEEEEEcC
Confidence            6999999987642     4566654  7899999999753

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00011  Score=41.05  Aligned_cols=24  Identities=38%  Similarity=0.619  Sum_probs=21.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ..|.|.+++.+|+|.|.|.+....
T Consensus        69 ~sL~I~~v~~~D~G~Y~C~V~~~~   92 (110)
T d1ncna_          69 WTLRLHNLQIKDKGLYQCIIHHKK   92 (110)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEEEC
T ss_pred             EEEEECCCChhHCEEEEEEEEecC
Confidence            679999999999999999986543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00019  Score=39.40  Aligned_cols=66  Identities=11%  Similarity=0.071  Sum_probs=44.2

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEE--EEcCee------e--ecceEEEEecCCCCceeEEEEcccCCC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKR--FDEGTR------F--DEGTVTAKVLQPFSERTLSVQDKIGPG  120 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~--~~~~~~------~--~~~~l~i~~~~~~d~g~y~~~n~~g~~  120 (139)
                      +|.+.+.+.. .+..|.+++|.|.........+  ++++..      .  ....+.|..+..+|.|+|.|.-..+..
T Consensus         5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~   80 (96)
T d1ucta2           5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRS   80 (96)
T ss_dssp             CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTS
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcCCC
Confidence            5777776654 6788999999998643333233  444432      1  224688889999999999776555443

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00034  Score=38.18  Aligned_cols=59  Identities=14%  Similarity=0.143  Sum_probs=39.8

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEE--EEcCeee-----------ecceEEEEecCCCCceeEEEE
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKR--FDEGTRF-----------DEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~--~~~~~~~-----------~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      +|.+.+.+.. .+..|.+|+|.|..... ...+  ++++...           ....+.|..+...|.|.|.|.
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~~~~-~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~   75 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI   75 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEecCCC-ccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEE
Confidence            4667766654 45789999999987543 2233  2344321           123689999999999999554

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.36  E-value=0.00074  Score=36.89  Aligned_cols=65  Identities=8%  Similarity=-0.031  Sum_probs=42.5

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcE-EEEcCee-------------eecceEEEEecCCCCceeEEEEcccCC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-RFDEGTR-------------FDEGTVTAKVLQPFSERTLSVQDKIGP  119 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~~~~~-------------~~~~~l~i~~~~~~d~g~y~~~n~~g~  119 (139)
                      +|.+.+.+.. .+..|.+++|.|......... .++++..             .....+.|..+...|.|+|.|.-....
T Consensus         2 KPsLsa~P~~-~V~~G~~VTl~C~~~~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   80 (96)
T d1nkra1           2 KPSLLAHPGP-LVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTH   80 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEESSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTT
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEECCCCCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcCC
Confidence            4667666643 567899999999976433322 2444331             012358899999999999977554443

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00014  Score=39.92  Aligned_cols=50  Identities=20%  Similarity=0.227  Sum_probs=34.7

Q ss_pred             eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCC----CCceeeeEEEEE
Q psy12134          2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNI----GESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~----~~~~s~~~~l~v   51 (139)
                      +.|+|+|.....      ....+.|.+++..|+|+|+|......    .+..|+.+.|.|
T Consensus        36 f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          36 FSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV   95 (96)
T ss_dssp             EEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             EEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcCCCCCCccCCCCCEEEEE
Confidence            568887753211      23678999999999999999876432    122477777766

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00015  Score=40.96  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=27.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   53 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~   53 (139)
                      ..|.|.+++.+|+|.|.|.+...... ....+.|.|..
T Consensus        74 ~sL~I~~l~~~DsG~Y~C~v~~~~~~-~~~~v~L~V~~  110 (116)
T d1xeda_          74 FVVNIAQLSQDDSGRYKCGLGINSRG-LSFDVSLEVLE  110 (116)
T ss_dssp             EEEEECSCCGGGCEEEEEEESCGGGC-CEEEEEEEEEC
T ss_pred             EEEEEhhhCcCCCEEEEEEEEcCCCC-ceEeEEEEEEC
Confidence            57999999999999999998643322 34456777764

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00013  Score=39.79  Aligned_cols=51  Identities=20%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             eEEEECCEEee--e----cCCeEEEcccCCCCCEEEEEEEE--cCCCCceeeeEEEEEe
Q psy12134          2 LVIFFSKIELL--Y----NRESLDLDRVTLKLAGLYQCIAS--NNIGESTSKNFIVNVI   52 (139)
Q Consensus         2 ~~W~~~~~~~~--~----~~~~L~i~~v~~~d~G~Y~C~~~--n~~~~~~s~~~~l~v~   52 (139)
                      +.++|+|....  .    ....+.|.+++..|+|.|+|...  +...+..|+.+.|.|.
T Consensus        34 f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~~~~~wS~~SdpLeL~Vt   92 (93)
T d1olla2          34 FLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT   92 (93)
T ss_dssp             EEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             EEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeECCCCCcCCCCCCEEEEee
Confidence            56777654321  1    23679999999999999999743  2212224777777764

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.0006  Score=37.24  Aligned_cols=60  Identities=8%  Similarity=0.058  Sum_probs=40.7

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCc-EEEEcCee-----------eecceEEEEecCCCCceeEEEE
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KRFDEGTR-----------FDEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      +|.+.+.+.. .+..|.+|+|.|...-.... ..++++..           .....+.|..+...|.|.|.|.
T Consensus         4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~   75 (96)
T d1ugna1           4 KPTLWAEPGS-VITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCY   75 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeECCC-ccCCCCcEEEEEeCCCCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEE
Confidence            5667766654 56789999999996532211 22444432           1235799999999999999655

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.0012  Score=36.07  Aligned_cols=66  Identities=9%  Similarity=0.020  Sum_probs=41.9

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcE-EEEcCeee--------------ecceEEEEecCCCCceeEEEEcccC
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-RFDEGTRF--------------DEGTVTAKVLQPFSERTLSVQDKIG  118 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~~~n~~g  118 (139)
                      +|.+++.+.. .+..|.+|+|.|.....-... .++.+...              ....+.|..+...|.|+|.|.-...
T Consensus         4 kPsLsa~P~~-~v~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2           4 KPTLSAQPSP-VVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECSSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEeCCCCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            5677776654 467899999999976432222 23333320              1235889999999999997755444


Q ss_pred             CC
Q psy12134        119 PG  120 (139)
Q Consensus       119 ~~  120 (139)
                      ..
T Consensus        83 ~~   84 (98)
T d1ugna2          83 NS   84 (98)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.23  E-value=0.0005  Score=38.37  Aligned_cols=57  Identities=7%  Similarity=-0.005  Sum_probs=40.9

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCee------------------------eecceEEEEecCCCCc
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTR------------------------FDEGTVTAKVLQPFSE  108 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~------------------------~~~~~l~i~~~~~~d~  108 (139)
                      +.+.+..+.+.+|++++|.|.........++|    .+..                        .....|.|.++..+|+
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCC
Confidence            34556667778999999999987666666777    1111                        0124799999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      |.| .|
T Consensus        84 a~YyCa   89 (107)
T d1c5cl1          84 ADYYCL   89 (107)
T ss_dssp             SEEEEE
T ss_pred             eEEEEe
Confidence            999 44

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.23  E-value=0.00058  Score=38.40  Aligned_cols=55  Identities=13%  Similarity=0.067  Sum_probs=39.9

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee--------------------------eecceEEEEecCCC
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR--------------------------FDEGTVTAKVLQPF  106 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~--------------------------~~~~~l~i~~~~~~  106 (139)
                      +.+.+....+.+|++++|.|.........++|-    +..                          .....|.|..+..+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            345566677789999999999876666667771    110                          02236899999999


Q ss_pred             CceeE
Q psy12134        107 SERTL  111 (139)
Q Consensus       107 d~g~y  111 (139)
                      |+|.|
T Consensus        83 Dsg~Y   87 (114)
T d2cdea1          83 DSASY   87 (114)
T ss_dssp             GCSEE
T ss_pred             hCccc
Confidence            99999

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.20  E-value=0.0006  Score=37.94  Aligned_cols=56  Identities=11%  Similarity=0.033  Sum_probs=40.0

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------------------------eecceEEEEecCCCCce
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR------------------------FDEGTVTAKVLQPFSER  109 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~g  109 (139)
                      .+.+..+.+.+|++++|.|.........++|-    +..                        .....|.|.++..+|++
T Consensus         4 tQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA   83 (106)
T d1a0ql1           4 TQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIA   83 (106)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCS
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCE
Confidence            45556667789999999998876655567771    111                        01236999999999999


Q ss_pred             eE-EE
Q psy12134        110 TL-SV  113 (139)
Q Consensus       110 ~y-~~  113 (139)
                      .| .|
T Consensus        84 ~YyCa   88 (106)
T d1a0ql1          84 TYYCL   88 (106)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99 44

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.20  E-value=0.00098  Score=37.01  Aligned_cols=56  Identities=16%  Similarity=-0.048  Sum_probs=40.1

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Ce--e----------------------eecceEEEEecCCCCce
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GT--R----------------------FDEGTVTAKVLQPFSER  109 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~--~----------------------~~~~~l~i~~~~~~d~g  109 (139)
                      .+.|..+.+.+|++++|.|.........++|-    +.  .                      .....|.|..+..+|++
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFA   83 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCS
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCC
Confidence            45566778889999999998866555556771    11  0                      01236899999999999


Q ss_pred             eE-EE
Q psy12134        110 TL-SV  113 (139)
Q Consensus       110 ~y-~~  113 (139)
                      .| .|
T Consensus        84 ~YyCa   88 (106)
T d1op3k1          84 TYHCQ   88 (106)
T ss_dssp             EEEEE
T ss_pred             cEeee
Confidence            99 44

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00055  Score=38.03  Aligned_cols=25  Identities=12%  Similarity=0.174  Sum_probs=21.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIG   40 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~   40 (139)
                      ..|.|.+++.+|+|.|.|.+.....
T Consensus        70 ~~L~I~~l~~~DsG~Y~C~v~~~~~   94 (108)
T d1hkfa_          70 FTVTMTDLREEDSGHYWCRIYRPSD   94 (108)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTT
T ss_pred             EEEEEhhhCCCCCEEEEEEEecCCC
Confidence            5689999999999999999876543

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00014  Score=40.72  Aligned_cols=50  Identities=8%  Similarity=0.078  Sum_probs=35.0

Q ss_pred             eeCCCCeEEEEEEeeeCCCcEEEEc-Cee-----------------------------eecceEEEEecCCCCceeEEEE
Q psy12134         65 HTAPDMRAEIICNVYANPPAKRFDE-GTR-----------------------------FDEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~~~~~-~~~-----------------------------~~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      .+.+|+++.|.|.........+.|. +..                             ..+++|.|.+++.+|+|.|.|+
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~   89 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD   89 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEE
Confidence            3568999999998554445556661 110                             1346899999999999999443

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.15  E-value=0.00082  Score=37.39  Aligned_cols=56  Identities=5%  Similarity=-0.032  Sum_probs=40.0

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCee------------------------eecceEEEEecCCCCce
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTR------------------------FDEGTVTAKVLQPFSER  109 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~------------------------~~~~~l~i~~~~~~d~g  109 (139)
                      .+.+..+.+.+|++++|.|.........++|    .+..                        .....|.|.++..+|+|
T Consensus         5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1j1pl_           5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCE
Confidence            3556667778999999999876555556677    1111                        02247999999999999


Q ss_pred             eE-EE
Q psy12134        110 TL-SV  113 (139)
Q Consensus       110 ~y-~~  113 (139)
                      .| .|
T Consensus        85 ~YyCa   89 (107)
T d1j1pl_          85 MYFCQ   89 (107)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99 44

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.14  E-value=0.0012  Score=37.03  Aligned_cols=55  Identities=13%  Similarity=-0.003  Sum_probs=39.4

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Ce--e------------------------eecceEEEEecCCC
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GT--R------------------------FDEGTVTAKVLQPF  106 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~--~------------------------~~~~~l~i~~~~~~  106 (139)
                      +.+.+..+.+.+|+.+.|.|.........++|-    +.  .                        .....|.|.++..+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            344556667788999999999876655566771    11  0                        02237899999999


Q ss_pred             CceeE
Q psy12134        107 SERTL  111 (139)
Q Consensus       107 d~g~y  111 (139)
                      |+|.|
T Consensus        83 Dsg~Y   87 (113)
T d2bnqd1          83 DSATY   87 (113)
T ss_dssp             GCEEE
T ss_pred             CCcEE
Confidence            99999

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.11  E-value=0.0014  Score=36.56  Aligned_cols=57  Identities=14%  Similarity=0.128  Sum_probs=40.1

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCee---------------------e---ecceEEEEecCCCCc
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTR---------------------F---DEGTVTAKVLQPFSE  108 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~---------------------~---~~~~l~i~~~~~~d~  108 (139)
                      +.+.+..+.+.+|+++.|.|.........++|    .+..                     .   ....|.|..+..+|+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            34556667778999999999987655555666    1110                     0   123699999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      |.| .|
T Consensus        84 a~YyCA   89 (108)
T d1jhll_          84 AMYICQ   89 (108)
T ss_dssp             SEEEEE
T ss_pred             eEEEEe
Confidence            999 55

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.10  E-value=0.00083  Score=37.34  Aligned_cols=57  Identities=11%  Similarity=0.025  Sum_probs=40.0

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------------------e------ecceEEEEecCCCCc
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR------------------F------DEGTVTAKVLQPFSE  108 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------------------~------~~~~l~i~~~~~~d~  108 (139)
                      +.+.|..+.+.+|++++|.|.........++|-    +..                  .      ....|.|.++..+|+
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC
Confidence            345566677889999999998765555556771    111                  0      123699999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      |.| .+
T Consensus        84 a~YyCa   89 (106)
T d1i8ka_          84 GDYYCL   89 (106)
T ss_dssp             EEEEEE
T ss_pred             EEEeEe
Confidence            999 44

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.08  E-value=0.00079  Score=37.42  Aligned_cols=56  Identities=9%  Similarity=-0.053  Sum_probs=39.9

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEEcC----ee------------------------eecceEEEEecCCCCce
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFDEG----TR------------------------FDEGTVTAKVLQPFSER  109 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~----~~------------------------~~~~~l~i~~~~~~d~g  109 (139)
                      .+.|..+.+.+|++++|.|.........++|-.    ..                        .....|.|.++..+|+|
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa   84 (107)
T d1kcvl1           5 TQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDA   84 (107)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCc
Confidence            355666677899999999998766555677711    10                        02236899999999999


Q ss_pred             eE-EE
Q psy12134        110 TL-SV  113 (139)
Q Consensus       110 ~y-~~  113 (139)
                      .| .|
T Consensus        85 ~YyCa   89 (107)
T d1kcvl1          85 DYYCG   89 (107)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99 54

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00033  Score=38.47  Aligned_cols=59  Identities=10%  Similarity=0.009  Sum_probs=39.5

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEE--EEcCee-------------eecceEEEEecCCCCceeEEEE
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKR--FDEGTR-------------FDEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~--~~~~~~-------------~~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      +|.+.+.+.. .+..|++|+|.|.... +...+  ++++..             .....+.|..+...|.|.|.|.
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~   80 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ   80 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEE
Confidence            5777776654 4678999999998763 33333  333221             0123588999999999999554

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.04  E-value=0.0015  Score=36.68  Aligned_cols=55  Identities=7%  Similarity=-0.029  Sum_probs=39.8

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee--------------------e------ecceEEEEecCCC
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR--------------------F------DEGTVTAKVLQPF  106 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~--------------------~------~~~~l~i~~~~~~  106 (139)
                      +.+.+..+.+.+|++++|.|.........++|-    +..                    .      ....|.|..+..+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            345555667788999999999877666667881    110                    0      1235999999999


Q ss_pred             CceeE
Q psy12134        107 SERTL  111 (139)
Q Consensus       107 d~g~y  111 (139)
                      |+|.|
T Consensus        84 Dsg~Y   88 (115)
T d1lp9e1          84 DSALY   88 (115)
T ss_dssp             GCEEE
T ss_pred             cCccc
Confidence            99999

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.04  E-value=0.00097  Score=37.09  Aligned_cols=53  Identities=13%  Similarity=-0.090  Sum_probs=37.0

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee--------------------------eecceEEEEecCCCCc
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR--------------------------FDEGTVTAKVLQPFSE  108 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~--------------------------~~~~~l~i~~~~~~d~  108 (139)
                      +.+..+.+.+|++++|.|.........++|-    +..                          .....|.|..+..+|+
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc
Confidence            3444566778999999999876544456771    111                          0123689999999999


Q ss_pred             eeE
Q psy12134        109 RTL  111 (139)
Q Consensus       109 g~y  111 (139)
                      |.|
T Consensus        84 a~Y   86 (110)
T d1u3ha1          84 ATY   86 (110)
T ss_dssp             SEE
T ss_pred             eeE
Confidence            999

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.03  E-value=0.0014  Score=35.89  Aligned_cols=62  Identities=10%  Similarity=-0.039  Sum_probs=40.4

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEE--EEcCee---------ee--cceEEEEecCCCCceeEEEEcc
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKR--FDEGTR---------FD--EGTVTAKVLQPFSERTLSVQDK  116 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~--~~~~~~---------~~--~~~l~i~~~~~~d~g~y~~~n~  116 (139)
                      -+|.+.+.+.. .+..|.+|+|.|...... ..+  ++++..         ..  ...+.|..+...|.|+|.|.-.
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~~~~-~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~   79 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSRSSY-DMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGS   79 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEESSCC-SEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEE
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCCCCc-cEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEee
Confidence            46777777654 667899999999876432 233  334322         11  1245778888899999966443

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.02  E-value=0.00097  Score=37.10  Aligned_cols=55  Identities=18%  Similarity=0.100  Sum_probs=39.3

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee----------------------e--ecceEEEEecCCCCc
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR----------------------F--DEGTVTAKVLQPFSE  108 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~----------------------~--~~~~l~i~~~~~~d~  108 (139)
                      +.+.|..+.+.+|+++.|.|.........++|-    +..                      .  ....|.|..+..+|.
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            345566677789999999999876555566671    111                      0  123689999999999


Q ss_pred             eeE
Q psy12134        109 RTL  111 (139)
Q Consensus       109 g~y  111 (139)
                      +.|
T Consensus        84 A~Y   86 (107)
T d1tjgl1          84 ATY   86 (107)
T ss_dssp             SEE
T ss_pred             ceE
Confidence            999

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.00  E-value=0.00074  Score=36.89  Aligned_cols=36  Identities=25%  Similarity=0.437  Sum_probs=27.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC----CCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI----GESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~----~~~~s~~~~l~v   51 (139)
                      ..+.|.+++..|+|.|.|......    .+..|+.+.|.|
T Consensus        57 a~F~l~~v~~~~~G~Y~C~y~~~~~p~~wS~pSdpLeL~V   96 (96)
T d1nkra1          57 ANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVI   96 (96)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEE
T ss_pred             EEEEEcccCcccCeEEEEEEEcCCCCCcccCCCCCEEEEC
Confidence            569999999999999999875432    233577777765

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.00  E-value=0.0038  Score=35.17  Aligned_cols=58  Identities=14%  Similarity=0.080  Sum_probs=40.5

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee-------------------------e-----ecceEEEEe
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR-------------------------F-----DEGTVTAKV  102 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~-------------------------~-----~~~~l~i~~  102 (139)
                      +.+.+....+.+|+++.|.|.........++|-    +..                         .     ....|.|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            445566667789999999999876655667771    110                         0     112589999


Q ss_pred             cCCCCceeE-EEE
Q psy12134        103 LQPFSERTL-SVQ  114 (139)
Q Consensus       103 ~~~~d~g~y-~~~  114 (139)
                      +..+|.|.| .|.
T Consensus        84 ~~~~Dsa~YyCa~   96 (118)
T d2ij0c1          84 AHPEDSGFYVCSA   96 (118)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccccCceEEEEE
Confidence            999999999 443

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.0013  Score=34.71  Aligned_cols=36  Identities=14%  Similarity=0.176  Sum_probs=29.4

Q ss_pred             CeEEEECCEEeeec---CCeEEEcccCCCCCEEEEEEEE
Q psy12134          1 MLVIFFSKIELLYN---RESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus         1 ~~~W~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      +++|++++..+...   ...|-|......-.|.|.|...
T Consensus        35 ~i~W~kdg~~i~~~~~~~ktlnLG~~~~DPRGiY~C~g~   73 (86)
T d1jbja1          35 TIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGA   73 (86)
T ss_dssp             CEEEEETTEECCCSSCCSSCCEEEETTSCCEEEEEEEES
T ss_pred             EEEEecCCceecccccccceeecCCcccCCCcceEcCCC
Confidence            37899999886543   3678999998899999999864

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00061  Score=37.96  Aligned_cols=24  Identities=17%  Similarity=0.041  Sum_probs=20.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ..|.|.+++.+|+|.|.|++....
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          79 CNLLLKDLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECC-
T ss_pred             EEEEECCCChhHCEEEEEEEEeCC
Confidence            569999999999999999997653

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.96  E-value=0.0012  Score=36.79  Aligned_cols=54  Identities=17%  Similarity=0.072  Sum_probs=38.9

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCee------------------------eecceEEEEecCCCCce
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTR------------------------FDEGTVTAKVLQPFSER  109 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~------------------------~~~~~l~i~~~~~~d~g  109 (139)
                      .+.+..+.+.+|++++|.|.........++|    .+..                        .....|.|.++..+|+|
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVA   84 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCS
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCC
Confidence            3445667778999999999887655556777    1111                        02247899999999999


Q ss_pred             eE
Q psy12134        110 TL  111 (139)
Q Consensus       110 ~y  111 (139)
                      .|
T Consensus        85 ~Y   86 (107)
T d1ospl1          85 TY   86 (107)
T ss_dssp             EE
T ss_pred             cE
Confidence            99

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.95  E-value=0.00072  Score=37.64  Aligned_cols=57  Identities=12%  Similarity=-0.006  Sum_probs=40.2

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCee------------------------eecceEEEEecCCCCc
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTR------------------------FDEGTVTAKVLQPFSE  108 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~------------------------~~~~~l~i~~~~~~d~  108 (139)
                      +.+.+..+.+.+|++++|.|.........++|    .+..                        .....|.|..+..+|+
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence            34555556778999999999977665556777    1111                        0123789999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      |.| .|
T Consensus        84 a~YyCa   89 (107)
T d3cx5k1          84 ATYFCQ   89 (107)
T ss_dssp             SEEEEE
T ss_pred             CcEEee
Confidence            999 44

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.93  E-value=0.0011  Score=36.82  Aligned_cols=57  Identities=12%  Similarity=0.052  Sum_probs=39.8

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcC----ee------------------------eecceEEEEecCCCCc
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEG----TR------------------------FDEGTVTAKVLQPFSE  108 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~----~~------------------------~~~~~l~i~~~~~~d~  108 (139)
                      +.+.+..+.+.+|++++|.|.........++|-.    ..                        .....|.|.++..+|+
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL   83 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence            3455566777899999999987655555567711    10                        0123689999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      +.| .|
T Consensus        84 A~YyCa   89 (107)
T d1mexl1          84 AEYFCQ   89 (107)
T ss_dssp             SEEEEE
T ss_pred             eeEEEe
Confidence            999 44

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.91  E-value=0.0012  Score=37.09  Aligned_cols=55  Identities=5%  Similarity=-0.035  Sum_probs=38.2

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee---------------------------eecceEEEEecCC
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR---------------------------FDEGTVTAKVLQP  105 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~---------------------------~~~~~l~i~~~~~  105 (139)
                      +.+.+....+.+|++++|.|.........++|-    +..                           .....|.|.++..
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            334455567788999999999775545555661    110                           0224699999999


Q ss_pred             CCceeE
Q psy12134        106 FSERTL  111 (139)
Q Consensus       106 ~d~g~y  111 (139)
                      +|+|.|
T Consensus        83 ~Dsg~Y   88 (115)
T d1i9ea_          83 SDSAVY   88 (115)
T ss_dssp             GGCEEE
T ss_pred             ccccee
Confidence            999999

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.90  E-value=0.0016  Score=36.35  Aligned_cols=54  Identities=6%  Similarity=-0.112  Sum_probs=37.7

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee--------------------------eecceEEEEecCCCC
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR--------------------------FDEGTVTAKVLQPFS  107 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~--------------------------~~~~~l~i~~~~~~d  107 (139)
                      .+.+....+.+|++++|.|.........++|-    +..                          .....|.|..+..+|
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            34455566778999999998776555556671    111                          012368899999999


Q ss_pred             ceeE
Q psy12134        108 ERTL  111 (139)
Q Consensus       108 ~g~y  111 (139)
                      +|.|
T Consensus        84 sa~Y   87 (111)
T d1bd2d1          84 SAVY   87 (111)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            9999

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.90  E-value=0.0022  Score=35.65  Aligned_cols=57  Identities=18%  Similarity=0.055  Sum_probs=39.7

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee----------------------e--ecceEEEEecCCCCc
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR----------------------F--DEGTVTAKVLQPFSE  108 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~----------------------~--~~~~l~i~~~~~~d~  108 (139)
                      +.+.+..+.+.+|+++.|.|...+.....++|-    +..                      .  ....|.|..+..+|+
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence            344556677789999999999876555556671    110                      0  123689999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      +.| .|
T Consensus        86 a~YyCA   91 (109)
T d1bwwa_          86 ATYYCQ   91 (109)
T ss_dssp             EEEEEE
T ss_pred             ceEEEe
Confidence            999 44

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.89  E-value=0.0018  Score=35.87  Aligned_cols=53  Identities=13%  Similarity=0.114  Sum_probs=37.7

Q ss_pred             ceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------------------------eecceEEEEecCCCCceeE-E
Q psy12134         62 QWIHTAPDMRAEIICNVYANPPAKRFDE----GTR------------------------FDEGTVTAKVLQPFSERTL-S  112 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~g~y-~  112 (139)
                      ..+.+.+|++++|.|.........++|-    +..                        .....|.|..+..+|+|.| .
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC   87 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC   87 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccc
Confidence            3567789999999999876555566771    110                        0123689999999999999 4


Q ss_pred             EE
Q psy12134        113 VQ  114 (139)
Q Consensus       113 ~~  114 (139)
                      |.
T Consensus        88 a~   89 (106)
T d1lk3l1          88 QQ   89 (106)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.82  E-value=0.00075  Score=37.07  Aligned_cols=50  Identities=16%  Similarity=0.092  Sum_probs=31.5

Q ss_pred             eEEEECCEEee--e-----c--CCeEEEcccCCCCCEEEEEEEEcCC----CCceeeeEEEEE
Q psy12134          2 LVIFFSKIELL--Y-----N--RESLDLDRVTLKLAGLYQCIASNNI----GESTSKNFIVNV   51 (139)
Q Consensus         2 ~~W~~~~~~~~--~-----~--~~~L~i~~v~~~d~G~Y~C~~~n~~----~~~~s~~~~l~v   51 (139)
                      +.|+|+|....  .     .  ...+.|..++..|+|.|+|......    .+..|+.+.|.|
T Consensus        36 f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          36 YHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHDSPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             EEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             EEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCCCCCCccCCCCCEEEEE
Confidence            56778764321  1     1  2346788888899999999765322    122467777665

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.81  E-value=0.0022  Score=35.61  Aligned_cols=57  Identities=12%  Similarity=0.076  Sum_probs=39.8

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------------------e------ecceEEEEecCCCCc
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR------------------F------DEGTVTAKVLQPFSE  108 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------------------~------~~~~l~i~~~~~~d~  108 (139)
                      +.+.+..+.+.+|++++|.|.........++|-    +..                  .      ....|.|..+..+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC
Confidence            345556667789999999998766555556671    110                  0      124789999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      +.| .|
T Consensus        84 a~YyCa   89 (107)
T d1d5il1          84 GIYYCL   89 (107)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            999 44

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.78  E-value=0.003  Score=35.09  Aligned_cols=57  Identities=14%  Similarity=0.053  Sum_probs=39.3

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCee--------------------------eecceEEEEecCCC
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTR--------------------------FDEGTVTAKVLQPF  106 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~--------------------------~~~~~l~i~~~~~~  106 (139)
                      +.+.+....+.+|+++.|.|.........++|    .+..                          .....|.|.++..+
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            34555666778899999999876554455677    1111                          01246889999999


Q ss_pred             CceeE-EE
Q psy12134        107 SERTL-SV  113 (139)
Q Consensus       107 d~g~y-~~  113 (139)
                      |+|.| .|
T Consensus        83 Dsa~YyCA   90 (110)
T d1ac6a_          83 DSAVYYCA   90 (110)
T ss_dssp             GCEEEEEE
T ss_pred             CCccccee
Confidence            99999 44

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.72  E-value=0.0043  Score=34.47  Aligned_cols=57  Identities=11%  Similarity=0.010  Sum_probs=40.2

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCee------------------------eecceEEEEecCCCCc
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTR------------------------FDEGTVTAKVLQPFSE  108 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~------------------------~~~~~l~i~~~~~~d~  108 (139)
                      +.+.|....+.+|+++.|.|.........++|    .+..                        .....|.|..+..+|+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC
Confidence            34556667778899999999987655556777    1111                        0123689999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      |.| .|
T Consensus        84 a~YyCA   89 (109)
T d1mqkl_          84 GSYYCQ   89 (109)
T ss_dssp             EEEEEE
T ss_pred             eeEEEe
Confidence            999 44

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.005  Score=34.40  Aligned_cols=59  Identities=5%  Similarity=0.008  Sum_probs=39.2

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCC-CcEEEEc----Cee---------------------e------ecceEEEEecC
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANP-PAKRFDE----GTR---------------------F------DEGTVTAKVLQ  104 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~~----~~~---------------------~------~~~~l~i~~~~  104 (139)
                      +.+.|..+.+.+|+++.|.|...... ...++|-    +..                     .      ....|.|.++.
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            34556667778999999999876543 3445671    110                     0      11258899999


Q ss_pred             CCCceeE-EEEc
Q psy12134        105 PFSERTL-SVQD  115 (139)
Q Consensus       105 ~~d~g~y-~~~n  115 (139)
                      .+|+|.| .+..
T Consensus        82 ~~Dsg~YyCa~~   93 (114)
T d3bp5a1          82 RNDSGIYLCGAI   93 (114)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCCeEEEEEEE
Confidence            9999999 4443

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.71  E-value=0.0015  Score=36.87  Aligned_cols=52  Identities=10%  Similarity=0.003  Sum_probs=34.6

Q ss_pred             ceEeeCCCCeEEEEEEeeeCC---CcEEEEcCe-------------e--------------e-------ecceEEEEecC
Q psy12134         62 QWIHTAPDMRAEIICNVYANP---PAKRFDEGT-------------R--------------F-------DEGTVTAKVLQ  104 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p---~~~~~~~~~-------------~--------------~-------~~~~l~i~~~~  104 (139)
                      ....+..|++++|.|......   ...++|...             .              +       ....|.|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            345667899999999875332   233566110             0              0       12479999999


Q ss_pred             CCCceeEEE
Q psy12134        105 PFSERTLSV  113 (139)
Q Consensus       105 ~~d~g~y~~  113 (139)
                      .+|+|.|.|
T Consensus        90 ~~D~G~Y~C   98 (126)
T d1pkoa_          90 FSDEGGYTC   98 (126)
T ss_dssp             GGGCEEEEE
T ss_pred             hhHCeEEEE
Confidence            999999944

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.69  E-value=0.0025  Score=35.72  Aligned_cols=55  Identities=11%  Similarity=0.036  Sum_probs=39.0

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee---e------------------------ecceEEEEecCC
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR---F------------------------DEGTVTAKVLQP  105 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~---~------------------------~~~~l~i~~~~~  105 (139)
                      +.+.+....+.+|+.++|.|.........++|-    +..   +                        ..-.|.|.++..
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            344556667789999999999876555567771    110   0                        122599999999


Q ss_pred             CCceeE
Q psy12134        106 FSERTL  111 (139)
Q Consensus       106 ~d~g~y  111 (139)
                      +|.|.|
T Consensus        83 ~Dsa~Y   88 (115)
T d1j8hd1          83 SDAAEY   88 (115)
T ss_dssp             GGCEEE
T ss_pred             cCCccc
Confidence            999999

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=96.67  E-value=0.0033  Score=35.14  Aligned_cols=55  Identities=9%  Similarity=-0.078  Sum_probs=38.4

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeC--CCcEEEEcC----ee--------------e----ecceEEEEecCCCCceeE
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYAN--PPAKRFDEG----TR--------------F----DEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~~~~~~----~~--------------~----~~~~l~i~~~~~~d~g~y  111 (139)
                      +.+.|....+.+|+++.|.|...+.  ....++|-.    ..              .    ..-.|.|..++.+|+|.|
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   81 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTY   81 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceE
Confidence            4556667777899999999988643  334466711    10              0    112689999999999999

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0026  Score=33.14  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             eEEEECCEEee---ecCCeEEEcccCCCCCEEEEEEEEc
Q psy12134          2 LVIFFSKIELL---YNRESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus         2 ~~W~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ++|++++..+.   .....|-|.....+-.|.|.|....
T Consensus        31 i~W~kdg~~i~~~~~~~ktlnLG~~~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          31 ITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQ   69 (81)
T ss_dssp             EEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             EEEecCCeEeecccCCcceeecCCcccCCCcceEcCCCC
Confidence            78999998654   3457899999988999999997643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.64  E-value=0.0043  Score=34.62  Aligned_cols=56  Identities=9%  Similarity=0.074  Sum_probs=38.1

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCC-CcEEEEc-------Ceee-------------------------------ecceEE
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANP-PAKRFDE-------GTRF-------------------------------DEGTVT   99 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~~-------~~~~-------------------------------~~~~l~   99 (139)
                      +.+....+.+|+++.|.|...... ...++|-       ...+                               ....|.
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            445566778999999999987643 3445661       1100                               123689


Q ss_pred             EEecCCCCceeE-EEE
Q psy12134        100 AKVLQPFSERTL-SVQ  114 (139)
Q Consensus       100 i~~~~~~d~g~y-~~~  114 (139)
                      |.++..+|+|.| .+.
T Consensus        83 I~~~~~~Dsg~Y~Ca~   98 (115)
T d2atpb1          83 IMNVKPEDSDFYFCAT   98 (115)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             ecccCCCCCcEEEEeE
Confidence            999999999999 443

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0028  Score=33.36  Aligned_cols=32  Identities=22%  Similarity=0.355  Sum_probs=22.6

Q ss_pred             eEEEECCEE-eeecCCeEEEcccCC-CCCEEEEEE
Q psy12134          2 LVIFFSKIE-LLYNRESLDLDRVTL-KLAGLYQCI   34 (139)
Q Consensus         2 ~~W~~~~~~-~~~~~~~L~i~~v~~-~d~G~Y~C~   34 (139)
                      |+|.+++.. +...+-.+.+ .+.. .|+|+|+|.
T Consensus        36 I~W~kd~~se~~~~GntltV-~VkE~~~aGnYTCh   69 (87)
T d3d85d1          36 ITWTLDQSSEVLGSGKTLTI-QVKEFGDAGQYTCH   69 (87)
T ss_dssp             CEEEETTCCCCCEESSEEEE-EECSGGGCEEEEEE
T ss_pred             cEEeeCCccccccCCCEEEE-EEEeccCCcceeEe
Confidence            789998765 3344555665 5544 589999997

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.002  Score=35.07  Aligned_cols=38  Identities=16%  Similarity=0.350  Sum_probs=28.6

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCC--CCceeeeEEEEEe
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNI--GESTSKNFIVNVI   52 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~--~~~~s~~~~l~v~   52 (139)
                      ...+.|.+++..|+|.|+|......  .+..++.+.|.|.
T Consensus        56 ~a~F~i~~v~~~~~G~Y~C~y~~~~~~~S~~Sd~leL~Vt   95 (96)
T d1ugna1          56 KGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVT   95 (96)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEE
T ss_pred             EEEEEEEecCHHHCCeEEEEEeCCCCCccccCCCEEEEEe
Confidence            4689999999999999999875331  1235777777764

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.013  Score=31.59  Aligned_cols=38  Identities=13%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEe
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI   52 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~   52 (139)
                      +++|.|..+.+.|+|.|.-.+.+..|.. ....+.|.|+
T Consensus        62 nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          62 NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             CCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            5899999999999999999999998875 4566776664

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00084  Score=37.94  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=20.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|++...
T Consensus        83 ~sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          83 CTLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEECCCChHHCEEEEEEEEeC
Confidence            57999999999999999999753

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.52  E-value=0.0026  Score=35.27  Aligned_cols=56  Identities=18%  Similarity=0.083  Sum_probs=38.5

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCC-CcEEEE----cCee------------------------eecceEEEEecCCCCc
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANP-PAKRFD----EGTR------------------------FDEGTVTAKVLQPFSE  108 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~----~~~~------------------------~~~~~l~i~~~~~~d~  108 (139)
                      .+.|..+.+.+|+++.|.|...... ...++|    .+..                        .....|.|.++..+|+
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF   84 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence            3556667788999999999876443 334567    1111                        0123689999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      |.| .|
T Consensus        85 a~YyCa   90 (108)
T d2fx7l1          85 AVYYCQ   90 (108)
T ss_dssp             SEEEEE
T ss_pred             EEEeee
Confidence            999 54

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.52  E-value=0.0056  Score=33.91  Aligned_cols=56  Identities=9%  Similarity=0.085  Sum_probs=38.4

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee----------------------------eecceEEEEecC
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR----------------------------FDEGTVTAKVLQ  104 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~----------------------------~~~~~l~i~~~~  104 (139)
                      +.+.|....+.+|++++|.|..... ...++|-    +..                            .....|.|.++.
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            4555666777899999999987543 3456771    110                            012357888999


Q ss_pred             CCCceeE-EE
Q psy12134        105 PFSERTL-SV  113 (139)
Q Consensus       105 ~~d~g~y-~~  113 (139)
                      .+|+|.| .|
T Consensus        83 ~~Dsa~YyCa   92 (110)
T d2aq2a1          83 PSQTSVYFCA   92 (110)
T ss_dssp             GGGCEEEEEE
T ss_pred             HhhCEEEEEe
Confidence            9999999 44

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0017  Score=36.26  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=19.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        76 ~~Lti~~l~~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          76 LRVRMVNLQVEDSGLYQCVIYQP   98 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCT
T ss_pred             EEEEEccCCcccCceEEEEEECC
Confidence            45889999999999999988544

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=96.47  E-value=0.0056  Score=34.16  Aligned_cols=60  Identities=10%  Similarity=-0.006  Sum_probs=40.1

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeC--CCcEEEEc----Cee----------e--------ecceEEEEecCCCCceeE-
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYAN--PPAKRFDE----GTR----------F--------DEGTVTAKVLQPFSERTL-  111 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~~~~~----~~~----------~--------~~~~l~i~~~~~~d~g~y-  111 (139)
                      +.+.+....+..|++++|.|...+.  ....++|-    +..          .        ....|.|..+..+|+|.| 
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence            3455566677889999999987543  23456771    111          0        123689999999999999 


Q ss_pred             EEEcc
Q psy12134        112 SVQDK  116 (139)
Q Consensus       112 ~~~n~  116 (139)
                      .|...
T Consensus        82 CA~~~   86 (112)
T d1sq2n_          82 CGLGV   86 (112)
T ss_dssp             EEECB
T ss_pred             EEEec
Confidence            55443

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00097  Score=36.21  Aligned_cols=49  Identities=10%  Similarity=-0.028  Sum_probs=34.5

Q ss_pred             eeCCCCeEEEEEEeeeCCCcEEEEcC----ee--------------------e-------ecceEEEEecCCCCceeEEE
Q psy12134         65 HTAPDMRAEIICNVYANPPAKRFDEG----TR--------------------F-------DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~~~~~~----~~--------------------~-------~~~~l~i~~~~~~d~g~y~~  113 (139)
                      ...+|++++|.|.........++|..    ..                    .       ...+|.|.+++.+|+|.|.|
T Consensus         5 ~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C   84 (97)
T d2nxyb1           5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC   84 (97)
T ss_dssp             EEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             EEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence            44579999999987765555667711    00                    0       11259999999999999944

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.43  E-value=0.0015  Score=35.65  Aligned_cols=27  Identities=22%  Similarity=0.209  Sum_probs=21.0

Q ss_pred             ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134         94 DEGTVTAKVLQPFSERTL--SVQDKIGPG  120 (139)
Q Consensus        94 ~~~~l~i~~~~~~d~g~y--~~~n~~g~~  120 (139)
                      .+++|.|.+++.+|+|.|  .+.+..|..
T Consensus        58 ~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~   86 (98)
T d1hnga1          58 ANGDLKIKNLTRDDSGTYNVTVYSTNGTR   86 (98)
T ss_dssp             TTSCEEESSCCGGGCEEEEEEEEETTCCE
T ss_pred             CCccEEEeCCCHHHCEEEEEEEEeCCCCE
Confidence            346899999999999999  556665543

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0028  Score=35.45  Aligned_cols=54  Identities=13%  Similarity=-0.035  Sum_probs=36.4

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCC-CcEEEEc------Cee---e-------------------------ecceEEEEe
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANP-PAKRFDE------GTR---F-------------------------DEGTVTAKV  102 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~~------~~~---~-------------------------~~~~l~i~~  102 (139)
                      .+.|....+..|++++|.|...... ...++|-      +..   +                         ....|.|.+
T Consensus         4 ~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~   83 (114)
T d1akjd_           4 RVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSD   83 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESS
T ss_pred             eECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEcc
Confidence            3445556677899999999976543 3445671      100   0                         112588999


Q ss_pred             cCCCCceeE
Q psy12134        103 LQPFSERTL  111 (139)
Q Consensus       103 ~~~~d~g~y  111 (139)
                      +..+|+|.|
T Consensus        84 l~~~Dsg~Y   92 (114)
T d1akjd_          84 FRRENEGYY   92 (114)
T ss_dssp             CCGGGCEEE
T ss_pred             CCCCCCEEE
Confidence            999999999

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.41  E-value=0.0062  Score=33.95  Aligned_cols=56  Identities=11%  Similarity=0.022  Sum_probs=37.4

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCC-----CcEEEEc----Cee------------------------eecceEEEEecCC
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANP-----PAKRFDE----GTR------------------------FDEGTVTAKVLQP  105 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p-----~~~~~~~----~~~------------------------~~~~~l~i~~~~~  105 (139)
                      +.+..+.+.+|++++|.|...+..     ...++|-    +..                        .....|.|..+..
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            445566778899999999875531     2345671    110                        0123689999999


Q ss_pred             CCceeE-EEE
Q psy12134        106 FSERTL-SVQ  114 (139)
Q Consensus       106 ~d~g~y-~~~  114 (139)
                      +|++.| .|.
T Consensus        86 ~DsAvYyCa~   95 (112)
T d1mjul1          86 EDVGVYYCLQ   95 (112)
T ss_dssp             GGCEEEEEEE
T ss_pred             cCCceEEEEe
Confidence            999999 554

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.39  E-value=0.0095  Score=33.14  Aligned_cols=57  Identities=7%  Similarity=0.050  Sum_probs=38.2

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee----------------------------eecceEEEEecCC
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR----------------------------FDEGTVTAKVLQP  105 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~----------------------------~~~~~l~i~~~~~  105 (139)
                      .+.+....+.+|+++.|.|.... ....++|-    +..                            .....|.|..+..
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   81 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             EEcCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence            34455567778999999998753 33456771    110                            0123699999999


Q ss_pred             CCceeE-EEEc
Q psy12134        106 FSERTL-SVQD  115 (139)
Q Consensus       106 ~d~g~y-~~~n  115 (139)
                      +|++.| .|..
T Consensus        82 ~DSa~YyCa~~   92 (114)
T d1ogae1          82 NPTAFYLCASS   92 (114)
T ss_dssp             CCCEEEEEEEE
T ss_pred             CCceeEEEeec
Confidence            999999 5543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.35  E-value=0.0018  Score=35.59  Aligned_cols=49  Identities=22%  Similarity=0.201  Sum_probs=34.7

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------------------------eecceEEEEecCCCCceeE
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFDE----GTR------------------------FDEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~g~y  111 (139)
                      .+.+.+|++++|.|.........++|-    +..                        .....|.|.++..+|+|.|
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceE
Confidence            456778999999998765444455671    111                        0124688999999999999

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.32  E-value=0.0063  Score=33.84  Aligned_cols=56  Identities=11%  Similarity=-0.009  Sum_probs=36.9

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCC----CcEEEE----cCee------------------------eecceEEEEecCC
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANP----PAKRFD----EGTR------------------------FDEGTVTAKVLQP  105 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p----~~~~~~----~~~~------------------------~~~~~l~i~~~~~  105 (139)
                      .+.+..+.+.+|++++|.|......    ...++|    .+..                        .....|.|..+..
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   84 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence            3445566778899999999864321    222566    1111                        0223789999999


Q ss_pred             CCceeE-EE
Q psy12134        106 FSERTL-SV  113 (139)
Q Consensus       106 ~d~g~y-~~  113 (139)
                      +|+|.| .|
T Consensus        85 ~Dsa~YyCa   93 (111)
T d1j05a_          85 DDVATYYCQ   93 (111)
T ss_dssp             GGCEEEEEE
T ss_pred             ccCccEEEe
Confidence            999999 44

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0071  Score=33.24  Aligned_cols=52  Identities=12%  Similarity=-0.058  Sum_probs=33.9

Q ss_pred             eEeeCCCCeEEEEEEeeeCC--CcEEEEcCe----e--------------------e------ecceEEEEecCCCCcee
Q psy12134         63 WIHTAPDMRAEIICNVYANP--PAKRFDEGT----R--------------------F------DEGTVTAKVLQPFSERT  110 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p--~~~~~~~~~----~--------------------~------~~~~l~i~~~~~~d~g~  110 (139)
                      .+.+.+|+++.|.|......  ....+|-+.    .                    .      ..-.|.|.+++.+|+|.
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~   84 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH   84 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence            35667899999999865332  234466111    0                    0      11258899999999999


Q ss_pred             EEEE
Q psy12134        111 LSVQ  114 (139)
Q Consensus       111 y~~~  114 (139)
                      |.|.
T Consensus        85 Y~C~   88 (108)
T d1hkfa_          85 YWCR   88 (108)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9554

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.29  E-value=0.03  Score=30.89  Aligned_cols=55  Identities=11%  Similarity=0.087  Sum_probs=38.4

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCee---------------------------eecceEEEEecCC
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTR---------------------------FDEGTVTAKVLQP  105 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~---------------------------~~~~~l~i~~~~~  105 (139)
                      +.+.|....+.+|+++.|.|.....-...++|    .+..                           .....|.|..+..
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~   83 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESC
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCc
Confidence            44556666778899999999976555556778    1111                           0224578888889


Q ss_pred             CCceeE
Q psy12134        106 FSERTL  111 (139)
Q Consensus       106 ~d~g~y  111 (139)
                      +|++.|
T Consensus        84 ~dsa~Y   89 (112)
T d1fo0b_          84 SQGRTL   89 (112)
T ss_dssp             CSCEEE
T ss_pred             cCCccE
Confidence            999999

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.20  E-value=0.0078  Score=33.46  Aligned_cols=55  Identities=11%  Similarity=0.002  Sum_probs=37.1

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCC-CcEEEEc----Cee---------------------e------ecceEEEEecC
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANP-PAKRFDE----GTR---------------------F------DEGTVTAKVLQ  104 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~~----~~~---------------------~------~~~~l~i~~~~  104 (139)
                      +.+.+..+.+.+|++++|.|...... ...++|-    +..                     .      ....|.|.++.
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            34455566778899999999865443 3345671    110                     0      12368999999


Q ss_pred             CCCceeE
Q psy12134        105 PFSERTL  111 (139)
Q Consensus       105 ~~d~g~y  111 (139)
                      .+|+|.|
T Consensus        83 ~~Dsg~Y   89 (114)
T d2ak4d1          83 VVDSAVY   89 (114)
T ss_dssp             GGGCEEE
T ss_pred             cccCCCc
Confidence            9999999

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.18  E-value=0.012  Score=32.56  Aligned_cols=55  Identities=5%  Similarity=-0.066  Sum_probs=36.8

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCC-cEEEEc----Cee------------------------eecceEEEEecCCCCceeE
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPP-AKRFDE----GTR------------------------FDEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~-~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~g~y  111 (139)
                      +..+.+.+|+++.|.|...+... ..++|-    +..                        .....|.|.++..+|+|.|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            33456678999999998765443 346771    111                        0123688999999999999


Q ss_pred             -EEEc
Q psy12134        112 -SVQD  115 (139)
Q Consensus       112 -~~~n  115 (139)
                       .|..
T Consensus        85 yCa~~   89 (112)
T d1kgcd1          85 YCILP   89 (112)
T ss_dssp             EEECC
T ss_pred             eeeEe
Confidence             5443

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.16  E-value=0.014  Score=32.36  Aligned_cols=55  Identities=9%  Similarity=-0.075  Sum_probs=37.5

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee-------------------------eecceEEEEecCCCCc
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR-------------------------FDEGTVTAKVLQPFSE  108 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~-------------------------~~~~~l~i~~~~~~d~  108 (139)
                      .+.+..+.+.+|+++.|.|..... ...++|-    +..                         .....|.|..+..+|+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            444556677789999999987653 3346771    110                         0123689999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      |.| .|
T Consensus        84 a~YyCa   89 (113)
T d1h5ba_          84 GTYFCA   89 (113)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999 44

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.14  E-value=0.01  Score=33.03  Aligned_cols=56  Identities=9%  Similarity=-0.023  Sum_probs=37.4

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeC-CCcEEEEc----Cee-----------------------e----ecceEEEEecCC
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYAN-PPAKRFDE----GTR-----------------------F----DEGTVTAKVLQP  105 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~~----~~~-----------------------~----~~~~l~i~~~~~  105 (139)
                      .+.+....+.+|+++.|.|..... ....++|-    +..                       .    ....|.|..+..
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            344556677889999999986543 33446771    110                       0    123589999999


Q ss_pred             CCceeE-EE
Q psy12134        106 FSERTL-SV  113 (139)
Q Consensus       106 ~d~g~y-~~  113 (139)
                      +|+|.| .|
T Consensus        83 ~Dsa~YyCa   91 (115)
T d1fo0a_          83 EDSAVYFCA   91 (115)
T ss_dssp             GGCEEEEEE
T ss_pred             cccccccce
Confidence            999999 44

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.09  E-value=0.012  Score=33.13  Aligned_cols=61  Identities=13%  Similarity=0.089  Sum_probs=40.2

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCC--CcEEEEc----Cee----------------------e----ecceEEEEecCCC
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANP--PAKRFDE----GTR----------------------F----DEGTVTAKVLQPF  106 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~~~----~~~----------------------~----~~~~l~i~~~~~~  106 (139)
                      ..+....+.+|++++|.|...+..  ...++|-    +..                      .    ....|.|..+..+
T Consensus         6 ~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~   85 (120)
T d1hxma1           6 PEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER   85 (120)
T ss_dssp             ESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             ccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccccc
Confidence            334455667899999999987554  2345671    110                      0    1236889999999


Q ss_pred             CceeE-EEEcccCC
Q psy12134        107 SERTL-SVQDKIGP  119 (139)
Q Consensus       107 d~g~y-~~~n~~g~  119 (139)
                      |.|.| .|....+.
T Consensus        86 Dsa~YyCA~~~~~~   99 (120)
T d1hxma1          86 DEGSYYCACDTLGM   99 (120)
T ss_dssp             GCEEEEEEEECCCC
T ss_pred             CCceeecCcccCCC
Confidence            99999 66655443

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.09  E-value=0.013  Score=32.04  Aligned_cols=56  Identities=11%  Similarity=0.141  Sum_probs=37.8

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------------------------eecceEEEEecCCCCc
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR------------------------FDEGTVTAKVLQPFSE  108 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~  108 (139)
                      +.+.|..+.+.+|++++|.|...... ..++|-    +..                        .....|.|.++..+|+
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~~~-~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASSSV-NYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA   81 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCC-CccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence            34556667788999999999865432 234671    110                        0123689999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      +.| .|
T Consensus        82 a~YyCa   87 (104)
T d1yqvl1          82 ATYYCQ   87 (104)
T ss_dssp             EEEEEE
T ss_pred             CeEEEE
Confidence            999 44

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.07  E-value=0.0062  Score=34.10  Aligned_cols=55  Identities=11%  Similarity=0.074  Sum_probs=37.8

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee--------------------------eecceEEEEecCCCC
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR--------------------------FDEGTVTAKVLQPFS  107 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~--------------------------~~~~~l~i~~~~~~d  107 (139)
                      .+.+....+.+|+++.|.|...... ..++|-    +..                          .....|.|..+..+|
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~~~-~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSSVF-SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSSCC-SCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEECCCC-ceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccc
Confidence            3445566778999999999976543 346671    110                          022468999999999


Q ss_pred             ceeE-EE
Q psy12134        108 ERTL-SV  113 (139)
Q Consensus       108 ~g~y-~~  113 (139)
                      +|.| .|
T Consensus        83 sa~YyCa   89 (115)
T d1ogad1          83 TGLYLCA   89 (115)
T ss_dssp             CEEEEEE
T ss_pred             eeeEccc
Confidence            9999 44

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.003  Score=35.34  Aligned_cols=17  Identities=18%  Similarity=0.085  Sum_probs=15.0

Q ss_pred             eEEEEecCCCCceeEEE
Q psy12134         97 TVTAKVLQPFSERTLSV  113 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y~~  113 (139)
                      .|.|.+++.+|+|.|.|
T Consensus        89 sL~I~~v~~~D~G~Y~C  105 (124)
T d1eaja_          89 SINVTNLQLSDIGTYQC  105 (124)
T ss_dssp             CEEECSCCGGGCEEEEE
T ss_pred             EEEEcccEEccCEEEEE
Confidence            69999999999999933

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.01  E-value=0.0091  Score=33.37  Aligned_cols=55  Identities=11%  Similarity=0.052  Sum_probs=36.7

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeC-CCcEEEEc----Cee---------------------e------ec--ceEEEEe
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYAN-PPAKRFDE----GTR---------------------F------DE--GTVTAKV  102 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~~----~~~---------------------~------~~--~~l~i~~  102 (139)
                      +.+.+..+.+.+|++++|.|..... ....++|-    +..                     .      ..  -.|.|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            3444555677789999999987543 34456671    110                     0      11  2578889


Q ss_pred             cCCCCceeE
Q psy12134        103 LQPFSERTL  111 (139)
Q Consensus       103 ~~~~d~g~y  111 (139)
                      ++.+|.|.|
T Consensus        83 ~~~~Dsg~Y   91 (116)
T d1tvda_          83 VRTEDSATY   91 (116)
T ss_dssp             CCGGGCEEE
T ss_pred             ccccccccc
Confidence            999999999

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.98  E-value=0.0034  Score=35.52  Aligned_cols=53  Identities=19%  Similarity=0.070  Sum_probs=37.1

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------------------------eecceEEEEecCCCCcee
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR------------------------FDEGTVTAKVLQPFSERT  110 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~g~  110 (139)
                      +.+..+.+.+|++++|.|.....-...++|-    +..                        .....|.|..+..+|+|.
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence            3455567788999999999776544456771    110                        012368999999999999


Q ss_pred             E
Q psy12134        111 L  111 (139)
Q Consensus       111 y  111 (139)
                      |
T Consensus        86 Y   86 (119)
T d1f3rb2          86 Y   86 (119)
T ss_dssp             E
T ss_pred             E
Confidence            9

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.98  E-value=0.026  Score=31.13  Aligned_cols=56  Identities=7%  Similarity=-0.019  Sum_probs=37.9

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee----------------------------eecceEEEEecCC
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR----------------------------FDEGTVTAKVLQP  105 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~----------------------------~~~~~l~i~~~~~  105 (139)
                      .+.|....+.+|+++.|.|..... ...++|-    +..                            .....|.|..+..
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             EECCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            445555667789999999987543 3456771    111                            0123699999999


Q ss_pred             CCceeE-EEE
Q psy12134        106 FSERTL-SVQ  114 (139)
Q Consensus       106 ~d~g~y-~~~  114 (139)
                      +|++.| .|.
T Consensus        82 ~DsavYyCA~   91 (112)
T d2bnub1          82 SQTSVYFCAS   91 (112)
T ss_dssp             GGCEEEEEEE
T ss_pred             HHCEEEEEee
Confidence            999999 544

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.96  E-value=0.018  Score=31.90  Aligned_cols=55  Identities=5%  Similarity=0.026  Sum_probs=37.0

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee-----------------------e-----ecceEEEEecCCC
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR-----------------------F-----DEGTVTAKVLQPF  106 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~-----------------------~-----~~~~l~i~~~~~~  106 (139)
                      +.+....+.+|++++|.|..... ...++|-    +..                       .     ....|.|..+..+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence            44555677789999999986543 2455771    111                       0     1236899999999


Q ss_pred             CceeE-EEE
Q psy12134        107 SERTL-SVQ  114 (139)
Q Consensus       107 d~g~y-~~~  114 (139)
                      |++.| .|.
T Consensus        83 Dsa~YyCA~   91 (113)
T d2ntsp1          83 DSALYLCAS   91 (113)
T ss_dssp             GCEEEEEEE
T ss_pred             cceeeeeee
Confidence            99999 543

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.01  Score=30.28  Aligned_cols=36  Identities=22%  Similarity=0.397  Sum_probs=26.7

Q ss_pred             CeEEEECCEEe-eecCCeEEEcccCCCCCEEEEEEEE
Q psy12134          1 MLVIFFSKIEL-LYNRESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus         1 ~~~W~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      .++|++++... ......|-|.....+-.|.|.|.+.
T Consensus        19 si~W~k~~~~~~~~~~k~lnLG~~~~DPRG~Y~C~~~   55 (74)
T d1xiwb_          19 SITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT   55 (74)
T ss_dssp             CEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC--
T ss_pred             eeEEecCCcccccCCccEeecCCcccCCCcceEeCCc
Confidence            37899986543 3345788998998889999999875

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.93  E-value=0.011  Score=32.75  Aligned_cols=56  Identities=13%  Similarity=0.052  Sum_probs=36.7

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeC-C---CcEEEEc----Cee------------------e------ecceEEEEecCC
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYAN-P---PAKRFDE----GTR------------------F------DEGTVTAKVLQP  105 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~-p---~~~~~~~----~~~------------------~------~~~~l~i~~~~~  105 (139)
                      .+.|..+.+.+|++++|.|..... .   ...++|-    +..                  .      ....|.|..+..
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~   84 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE   84 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc
Confidence            355566677899999999986532 1   2235671    111                  0      123688999999


Q ss_pred             CCceeE-EE
Q psy12134        106 FSERTL-SV  113 (139)
Q Consensus       106 ~d~g~y-~~  113 (139)
                      +|++.| .|
T Consensus        85 ~DsA~YyCa   93 (111)
T d2gsia1          85 EDAATYYCS   93 (111)
T ss_dssp             GGCEEEEEE
T ss_pred             cCCceEEEE
Confidence            999999 44

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.92  E-value=0.0065  Score=33.77  Aligned_cols=17  Identities=12%  Similarity=0.151  Sum_probs=15.2

Q ss_pred             eEEEEecCCCCceeEEE
Q psy12134         97 TVTAKVLQPFSERTLSV  113 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y~~  113 (139)
                      .|.|.++..+|+|.|.|
T Consensus        82 sL~I~~v~~~DsG~Y~C   98 (119)
T d1neua_          82 SIVIHNLDYSDNGTFTC   98 (119)
T ss_dssp             CEEECSCCGGGCEEEEE
T ss_pred             EEEECCCChHHCEEEEE
Confidence            69999999999999944

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.016  Score=32.11  Aligned_cols=49  Identities=12%  Similarity=0.024  Sum_probs=33.3

Q ss_pred             eEeeCCCCeEEEEEEeeeCCC---cEEEEc----Cee------------------------eecceEEEEecCCCCceeE
Q psy12134         63 WIHTAPDMRAEIICNVYANPP---AKRFDE----GTR------------------------FDEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~---~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~g~y  111 (139)
                      .+.+.+|++++|.|.......   ..++|-    +..                        .....|.|..+..+|.|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            456778999999999864332   124561    111                        0223688999999999999

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.86  E-value=0.016  Score=32.27  Aligned_cols=57  Identities=9%  Similarity=-0.032  Sum_probs=38.3

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCC-----CcEEEEc----Cee------------------------eecceEEEEec
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANP-----PAKRFDE----GTR------------------------FDEGTVTAKVL  103 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~~~~~----~~~------------------------~~~~~l~i~~~  103 (139)
                      +.+.+....+.+|++++|.|......     ...++|-    +..                        .....|.|..+
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   84 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   84 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence            34556667778999999999975422     1345661    111                        02247999999


Q ss_pred             CCCCceeE-EE
Q psy12134        104 QPFSERTL-SV  113 (139)
Q Consensus       104 ~~~d~g~y-~~  113 (139)
                      ..+|++.| .|
T Consensus        85 ~~~DsavYyCa   95 (113)
T d1n4xl_          85 EAEDLGIYYCF   95 (113)
T ss_dssp             CGGGCEEEEEE
T ss_pred             CcccCEEEEEE
Confidence            99999999 44

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.86  E-value=0.013  Score=32.41  Aligned_cols=54  Identities=6%  Similarity=-0.034  Sum_probs=36.5

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee-------------------------e----ecceEEEEecCC
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR-------------------------F----DEGTVTAKVLQP  105 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~-------------------------~----~~~~l~i~~~~~  105 (139)
                      +.|....+.+|++++|.|..... ...++|-    +..                         .    ....|.|.++..
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   82 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL   82 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred             ECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence            44555667789999999985543 3456771    110                         0    113689999999


Q ss_pred             CCceeE-EE
Q psy12134        106 FSERTL-SV  113 (139)
Q Consensus       106 ~d~g~y-~~  113 (139)
                      +|+|.| .|
T Consensus        83 ~Dsa~YyCa   91 (111)
T d2esve1          83 EDSGVYFCA   91 (111)
T ss_dssp             GGCEEEEEE
T ss_pred             CCCceEEEe
Confidence            999999 44

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.83  E-value=0.018  Score=31.77  Aligned_cols=56  Identities=9%  Similarity=0.048  Sum_probs=36.9

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee-----------------------------eecceEEEEecCC
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR-----------------------------FDEGTVTAKVLQP  105 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~-----------------------------~~~~~l~i~~~~~  105 (139)
                      +.|....+.+|+++.|.|..... ...++|-    +..                             .....|.|.++.+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPISG-HVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCTT-CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred             ECCCeEEECCCCCEEEEEEECCC-CCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence            44555667789999999986432 3345671    110                             0123688999999


Q ss_pred             CCceeE-EEEc
Q psy12134        106 FSERTL-SVQD  115 (139)
Q Consensus       106 ~d~g~y-~~~n  115 (139)
                      +|+|.| .|..
T Consensus        83 ~Dsa~YyCa~~   93 (112)
T d1kgce1          83 EDSAVYLCASS   93 (112)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCCEEEEEeee
Confidence            999999 5543

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.82  E-value=0.011  Score=32.72  Aligned_cols=49  Identities=10%  Similarity=-0.035  Sum_probs=34.0

Q ss_pred             eEeeCCCCeEEEEEEeeeCC-CcEEEEc----Cee------------------------eecceEEEEecCCCCceeE
Q psy12134         63 WIHTAPDMRAEIICNVYANP-PAKRFDE----GTR------------------------FDEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p-~~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~g~y  111 (139)
                      .+.+.+|++++|.|...... ...++|-    +..                        .....|.|.++..+|+|.|
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            45667899999999876433 3445771    110                        0223689999999999999

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=95.78  E-value=0.0062  Score=33.82  Aligned_cols=52  Identities=17%  Similarity=0.079  Sum_probs=35.1

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------------------------eecceEEEEecCCCCceeE-EE
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAKRFDE----GTR------------------------FDEGTVTAKVLQPFSERTL-SV  113 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~g~y-~~  113 (139)
                      .+.+.+|++++|.|.........++|-    +..                        .....|.|.++..+|++.| .|
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence            456778999999998654333445661    111                        0123688899999999999 54


Q ss_pred             E
Q psy12134        114 Q  114 (139)
Q Consensus       114 ~  114 (139)
                      .
T Consensus        89 ~   89 (109)
T d1w72l1          89 V   89 (109)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0045  Score=33.48  Aligned_cols=37  Identities=11%  Similarity=-0.008  Sum_probs=23.3

Q ss_pred             eEEEECCEEeeec-----------CCe---EEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN-----------RES---LDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~---L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|++||.++...           +..   ...-.+...+...|+|++.+.
T Consensus        34 v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          34 MKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             EEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             EEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence            7899999886421           111   112234455667899999875

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.01  Score=33.00  Aligned_cols=24  Identities=17%  Similarity=0.458  Sum_probs=20.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ..|+|.+++.+|+|.|.|......
T Consensus        72 ~~lti~~L~~eDsa~YyCa~~~~~   95 (110)
T d1u9ka_          72 LQVQMTDLQVTDSGLYRCVIYHPP   95 (110)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTT
T ss_pred             EEEEECccccCCCEEEEEEEeCCC
Confidence            448899999999999999986543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.69  E-value=0.0098  Score=33.08  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|....
T Consensus        79 ~~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          79 PFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEeecccCCCCCcEEEEeEcC
Confidence            5699999999999999998753

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.66  E-value=0.011  Score=31.66  Aligned_cols=16  Identities=19%  Similarity=0.121  Sum_probs=14.5

Q ss_pred             ceEEEEecCCCCceeE
Q psy12134         96 GTVTAKVLQPFSERTL  111 (139)
Q Consensus        96 ~~l~i~~~~~~d~g~y  111 (139)
                      ..|.|.++..+|+|.|
T Consensus        57 ~sL~I~~~~~~Dsg~Y   72 (94)
T d2gj6d1          57 VSLLIRDSQPSDSATY   72 (94)
T ss_dssp             EEEEECSCCGGGCEEE
T ss_pred             EeEEeeccccCcCccc
Confidence            3689999999999999

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.63  E-value=0.012  Score=32.93  Aligned_cols=52  Identities=15%  Similarity=0.107  Sum_probs=36.1

Q ss_pred             eEeeCCCCeEEEEEEeeeCC--CcEEEEc----Cee------------------------eecceEEEEecCCCCceeE-
Q psy12134         63 WIHTAPDMRAEIICNVYANP--PAKRFDE----GTR------------------------FDEGTVTAKVLQPFSERTL-  111 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p--~~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~g~y-  111 (139)
                      .+.+.+|++++|.|...+..  ...++|-    +..                        .....|.|.++..+|++.| 
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            45677899999999986543  3456771    110                        0124689999999999999 


Q ss_pred             EEE
Q psy12134        112 SVQ  114 (139)
Q Consensus       112 ~~~  114 (139)
                      .|.
T Consensus        89 CA~   91 (114)
T d2rhea_          89 CAA   91 (114)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.61  E-value=0.0075  Score=33.42  Aligned_cols=53  Identities=13%  Similarity=0.090  Sum_probs=35.5

Q ss_pred             CceEeeCCCCeEEEEEEeeeCCC--cEEEEc----Cee--------------------------eecceEEEEecCCCCc
Q psy12134         61 KQWIHTAPDMRAEIICNVYANPP--AKRFDE----GTR--------------------------FDEGTVTAKVLQPFSE  108 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p~--~~~~~~----~~~--------------------------~~~~~l~i~~~~~~d~  108 (139)
                      +....+.+|++++|.|...+...  ..++|-    +..                          .....|.|.++..+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            34567789999999999765432  224561    110                          0123688999999999


Q ss_pred             eeE-EE
Q psy12134        109 RTL-SV  113 (139)
Q Consensus       109 g~y-~~  113 (139)
                      +.| .|
T Consensus        87 a~YyCA   92 (111)
T d1cd0a_          87 ADYYCQ   92 (111)
T ss_dssp             EEEEEE
T ss_pred             cEEEEe
Confidence            999 44

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.012  Score=31.85  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=19.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..+.|.+++..|+|.|+|.....
T Consensus        60 a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          60 AIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             EEEEECCCCTTSCEEEEEEEECT
T ss_pred             EEEEeeecccCCCeEEEEeeEcC
Confidence            46999999999999999987543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.56  E-value=0.014  Score=32.47  Aligned_cols=56  Identities=13%  Similarity=0.004  Sum_probs=36.8

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCC-----CcEEEEc----Cee------------------e------ecceEEEEecC
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANP-----PAKRFDE----GTR------------------F------DEGTVTAKVLQ  104 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~~~~~----~~~------------------~------~~~~l~i~~~~  104 (139)
                      .+.|..+.+.+|++++|.|......     ...++|-    +..                  .      ....|.|..+.
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~   84 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVE   84 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccc
Confidence            3445666778899999999865432     1235671    110                  0      12368999999


Q ss_pred             CCCceeEEE
Q psy12134        105 PFSERTLSV  113 (139)
Q Consensus       105 ~~d~g~y~~  113 (139)
                      .+|++.|-|
T Consensus        85 ~eDsAvYYC   93 (112)
T d1ncwl1          85 AEDLGVYYC   93 (112)
T ss_dssp             GGGCEEEEE
T ss_pred             cCcCEeEEE
Confidence            999999933

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=95.56  E-value=0.014  Score=32.40  Aligned_cols=57  Identities=12%  Similarity=0.000  Sum_probs=36.8

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCC------CcEEEE----cCee------------------------eecceEEEEec
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANP------PAKRFD----EGTR------------------------FDEGTVTAKVL  103 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p------~~~~~~----~~~~------------------------~~~~~l~i~~~  103 (139)
                      .+.|..+.+.+|++++|.|...+..      ...++|    .+..                        .....|.|..+
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l   84 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSV   84 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccc
Confidence            3445566777899999999765321      122456    1110                        01236899999


Q ss_pred             CCCCceeE-EEE
Q psy12134        104 QPFSERTL-SVQ  114 (139)
Q Consensus       104 ~~~d~g~y-~~~  114 (139)
                      ..+|+|.| .|.
T Consensus        85 ~~~Dsa~YyCA~   96 (113)
T d1q9ra1          85 QAEDLAVYYCKQ   96 (113)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCCCeEEEecc
Confidence            99999999 553

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=95.54  E-value=0.028  Score=31.01  Aligned_cols=54  Identities=13%  Similarity=0.039  Sum_probs=36.6

Q ss_pred             CceEeeCCCCeEEEEEEeeeCC---CcEEEEc----Cee------------------------eecceEEEEecCCCCce
Q psy12134         61 KQWIHTAPDMRAEIICNVYANP---PAKRFDE----GTR------------------------FDEGTVTAKVLQPFSER  109 (139)
Q Consensus        61 ~~~~~~~~g~~~~l~C~~~~~p---~~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~g  109 (139)
                      +..+.+.+|++++|.|...+..   ...++|-    +..                        .....|.|..+..+|++
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            4456778999999999976532   2345671    111                        02236889999999999


Q ss_pred             eE-EEE
Q psy12134        110 TL-SVQ  114 (139)
Q Consensus       110 ~y-~~~  114 (139)
                      .| .|.
T Consensus        87 ~YyCa~   92 (112)
T d1lgva1          87 DYYCSS   92 (112)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            99 543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.51  E-value=0.0093  Score=32.85  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=19.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+.+
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          71 FVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             eeecccCCccccCEEEeEecCc
Confidence            5699999999999999998654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.45  E-value=0.038  Score=30.45  Aligned_cols=56  Identities=5%  Similarity=0.035  Sum_probs=36.7

Q ss_pred             EecCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCee----------------------------eecceEEEEecCC
Q psy12134         58 SVEKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTR----------------------------FDEGTVTAKVLQP  105 (139)
Q Consensus        58 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~----------------------------~~~~~l~i~~~~~  105 (139)
                      .+.+....+.+|+++.|.|..... ...++|    .+..                            .....|.|..+..
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   82 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQDMD-HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST   82 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEESSC-CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEEcCC-ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc
Confidence            344555666789999999986432 345677    1111                            0123688899999


Q ss_pred             CCceeE-EEE
Q psy12134        106 FSERTL-SVQ  114 (139)
Q Consensus       106 ~d~g~y-~~~  114 (139)
                      +|+|.| .|.
T Consensus        83 ~Dsa~YyCa~   92 (113)
T d1j8he1          83 NQTSMYLCAS   92 (113)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCcccEEeeE
Confidence            999999 443

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.45  E-value=0.011  Score=31.18  Aligned_cols=36  Identities=22%  Similarity=0.307  Sum_probs=25.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   51 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v   51 (139)
                      ..|.+..+..+|.|.|+|.+.-..+...+.++++.|
T Consensus        68 FvLhF~pvl~sDnGsYrCSanf~s~vieSHSvti~V  103 (104)
T d1xaua_          68 FVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEeeeeeecCCCceEEecCCChhheecceEEEEe
Confidence            456778999999999999997654443344555444

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=95.43  E-value=0.014  Score=31.59  Aligned_cols=38  Identities=13%  Similarity=0.091  Sum_probs=24.6

Q ss_pred             eEEEECCEEeeec----------CCe---EEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN----------RES---LDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~---L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |.|++||.++...          ++.   +..-.+...+...|+|++.+..
T Consensus        37 v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          37 VRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             EEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             EEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            7899999876321          112   2223456677789999998753

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0048  Score=33.96  Aligned_cols=18  Identities=17%  Similarity=-0.040  Sum_probs=15.7

Q ss_pred             ceEEEEecCCCCceeEEE
Q psy12134         96 GTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        96 ~~l~i~~~~~~d~g~y~~  113 (139)
                      ..|.|.+++.+|+|.|.|
T Consensus        69 ~sL~I~~v~~~D~G~Y~C   86 (110)
T d1ncna_          69 WTLRLHNLQIKDKGLYQC   86 (110)
T ss_dssp             TEEEECSCCGGGCEEEEE
T ss_pred             EEEEECCCChhHCEEEEE
Confidence            469999999999999944

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.36  E-value=0.015  Score=31.90  Aligned_cols=22  Identities=23%  Similarity=0.203  Sum_probs=19.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          71 FTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             eecEEHhheecCCceEEEEecC
Confidence            6699999999999999998653

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0073  Score=33.54  Aligned_cols=54  Identities=7%  Similarity=0.038  Sum_probs=34.8

Q ss_pred             cCceEeeCCCCeEEEEEEeeeCC---CcEEEEcC----ee--------------------e------ecceEEEEecCCC
Q psy12134         60 EKQWIHTAPDMRAEIICNVYANP---PAKRFDEG----TR--------------------F------DEGTVTAKVLQPF  106 (139)
Q Consensus        60 ~~~~~~~~~g~~~~l~C~~~~~p---~~~~~~~~----~~--------------------~------~~~~l~i~~~~~~  106 (139)
                      .|+.+.+.+|++++|.|......   ...++|-.    ..                    .      ..-.|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            34556777899999999864322   22345610    00                    0      1136899999999


Q ss_pred             CceeEEE
Q psy12134        107 SERTLSV  113 (139)
Q Consensus       107 d~g~y~~  113 (139)
                      |+|.|.|
T Consensus        85 DsG~Y~C   91 (116)
T d1xeda_          85 DSGRYKC   91 (116)
T ss_dssp             GCEEEEE
T ss_pred             CCEEEEE
Confidence            9999944

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.023  Score=31.49  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=20.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.++..+|+|.|.|.+...
T Consensus        73 ~~L~I~~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          73 FHMNILDTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECS
T ss_pred             EEEEECccCcCCCeEEEEEEEeC
Confidence            45899999999999999988643

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.30  E-value=0.037  Score=31.17  Aligned_cols=55  Identities=15%  Similarity=0.088  Sum_probs=35.3

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCC--CcEEEEc----Cee-----------------------e--------ecceEEEE
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANP--PAKRFDE----GTR-----------------------F--------DEGTVTAK  101 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~~~----~~~-----------------------~--------~~~~l~i~  101 (139)
                      +++......+|+++.|.|.+.+..  ...++|-    +..                       .        ....|.|.
T Consensus         6 Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~   85 (123)
T d1hxmb1           6 QPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIH   85 (123)
T ss_dssp             CCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccc
Confidence            333445556899999999987643  2345661    100                       0        01248888


Q ss_pred             ecCCCCceeE-EE
Q psy12134        102 VLQPFSERTL-SV  113 (139)
Q Consensus       102 ~~~~~d~g~y-~~  113 (139)
                      ++..+|.+.| .|
T Consensus        86 ~l~~~Dsa~YyCA   98 (123)
T d1hxmb1          86 NVEKQDIATYYCA   98 (123)
T ss_dssp             SCCGGGCEEEEEE
T ss_pred             ccccccCcEEEEe
Confidence            9999999999 54

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.22  E-value=0.016  Score=31.79  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+.+
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          71 FTLSINSVETEDFGMYFCQQAN   92 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEEcccCcCCCEEEEEEcCC
Confidence            6799999999999999997653

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.20  E-value=0.0093  Score=31.99  Aligned_cols=22  Identities=18%  Similarity=0.223  Sum_probs=19.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        57 ~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1          57 VSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             EEEEECSCCGGGCEEEEEEEES
T ss_pred             EeEEeeccccCcCccceeeEec
Confidence            5799999999999999998864

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.18  E-value=0.016  Score=32.01  Aligned_cols=51  Identities=16%  Similarity=0.020  Sum_probs=35.3

Q ss_pred             eEeeCCCCeEEEEEEeeeCC--CcEEEEcCe----e------------------------eecceEEEEecCCCCceeE-
Q psy12134         63 WIHTAPDMRAEIICNVYANP--PAKRFDEGT----R------------------------FDEGTVTAKVLQPFSERTL-  111 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p--~~~~~~~~~----~------------------------~~~~~l~i~~~~~~d~g~y-  111 (139)
                      .+.+.+|+++.|.|......  ...++|-.+    .                        .....|.|..+..+|+|.| 
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY   88 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceE
Confidence            56778999999999876432  234567111    0                        0224789999999999999 


Q ss_pred             EE
Q psy12134        112 SV  113 (139)
Q Consensus       112 ~~  113 (139)
                      .|
T Consensus        89 CA   90 (111)
T d1rzfl1          89 CG   90 (111)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.023  Score=31.63  Aligned_cols=25  Identities=8%  Similarity=-0.087  Sum_probs=19.3

Q ss_pred             ceEEEEecCCCCceeEEEEcccCCC
Q psy12134         96 GTVTAKVLQPFSERTLSVQDKIGPG  120 (139)
Q Consensus        96 ~~l~i~~~~~~d~g~y~~~n~~g~~  120 (139)
                      ..|.|.++..+|+|.|.|.-..|..
T Consensus        83 ~sL~I~~v~~~DsG~Y~C~v~~~~~  107 (121)
T d2g5ra1          83 CTLSIRDARMSDAGRYFFRMEKGNI  107 (121)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEECCCChHHCEEEEEEEEeCCc
Confidence            3699999999999999555544443

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.17  E-value=0.023  Score=30.46  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=27.6

Q ss_pred             eEEEECCEEeeec-CCeEEEcccCC-CCCEEEEEEEE
Q psy12134          2 LVIFFSKIELLYN-RESLDLDRVTL-KLAGLYQCIAS   36 (139)
Q Consensus         2 ~~W~~~~~~~~~~-~~~L~i~~v~~-~d~G~Y~C~~~   36 (139)
                      |.|.+++..+... +..|.+.+-+. +++|.|.|...
T Consensus        29 I~Wkkn~~~i~g~~~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          29 LKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             CEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECS
T ss_pred             eEEeeccccCCCCCCcEEEEccccccccCcceEEecC
Confidence            7899999887764 45688888766 79999999643

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.15  E-value=0.0076  Score=33.34  Aligned_cols=53  Identities=15%  Similarity=0.060  Sum_probs=34.8

Q ss_pred             ceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------------------------eecceEEEEecCCCCceeE-E
Q psy12134         62 QWIHTAPDMRAEIICNVYANPPAKRFDE----GTR------------------------FDEGTVTAKVLQPFSERTL-S  112 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------------------------~~~~~l~i~~~~~~d~g~y-~  112 (139)
                      ....+.+|++++|.|.........++|-    +..                        .....|.|..+..+|+|.| .
T Consensus         7 ~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyC   86 (108)
T d1nfde1           7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYC   86 (108)
T ss_dssp             SEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEE
T ss_pred             CeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEE
Confidence            3456678999999998754433345661    111                        0123688888999999999 5


Q ss_pred             EE
Q psy12134        113 VQ  114 (139)
Q Consensus       113 ~~  114 (139)
                      |.
T Consensus        87 A~   88 (108)
T d1nfde1          87 LS   88 (108)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.10  E-value=0.015  Score=32.11  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+.+
T Consensus        71 ~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          71 YSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             EEEEEhhhcccCCeEEEEecCc
Confidence            5799999999999999997654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.10  E-value=0.0099  Score=33.01  Aligned_cols=24  Identities=13%  Similarity=0.185  Sum_probs=20.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ..|.|.+++.+|+|.|.|.+....
T Consensus        74 ~~L~I~~~~~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          74 FNFTITASQVVDSAVYFCALSGFY   97 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSB
T ss_pred             EEEeecccccccCCCceEeCCCCC
Confidence            579999999999999999876543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.09  E-value=0.015  Score=32.03  Aligned_cols=22  Identities=14%  Similarity=0.184  Sum_probs=19.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          71 YTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             EEeEEcccccccCCcEEEeecc
Confidence            7799999999999999998753

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.032  Score=29.46  Aligned_cols=36  Identities=14%  Similarity=0.306  Sum_probs=27.8

Q ss_pred             eEEEECCEEeeecC---------CeEEEcccCC-CCCEEEEEEEEc
Q psy12134          2 LVIFFSKIELLYNR---------ESLDLDRVTL-KLAGLYQCIASN   37 (139)
Q Consensus         2 ~~W~~~~~~~~~~~---------~~L~i~~v~~-~d~G~Y~C~~~n   37 (139)
                      +.|-+++..+....         .-|.|.+-+. +++|.|.|.+..
T Consensus        25 i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_          25 ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             eeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCC
Confidence            78999987776532         4688888776 699999999853

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.03  E-value=0.025  Score=31.30  Aligned_cols=57  Identities=11%  Similarity=0.045  Sum_probs=37.7

Q ss_pred             EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee------------------------e----ecceEEEEecC
Q psy12134         57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR------------------------F----DEGTVTAKVLQ  104 (139)
Q Consensus        57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~------------------------~----~~~~l~i~~~~  104 (139)
                      +.+.+....+.+|+++.|.|..... ...++|-    +..                        .    ....|.|..+.
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   82 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC
Confidence            3455566677789999999986543 3356771    110                        0    12258888999


Q ss_pred             CCCceeE-EEE
Q psy12134        105 PFSERTL-SVQ  114 (139)
Q Consensus       105 ~~d~g~y-~~~  114 (139)
                      .+|+|.| .|.
T Consensus        83 ~~Dsa~YyCa~   93 (113)
T d1nfdb1          83 LEDSAMYFCAS   93 (113)
T ss_dssp             GGGCEEECEEE
T ss_pred             cCCceeEEEEe
Confidence            9999999 543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.01  E-value=0.0084  Score=33.37  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.++..+|+|.|.|.+...
T Consensus        72 ~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          72 SSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             EEEEECSCCGGGCSEEEEEEECS
T ss_pred             cccEEcccChhhCcccceeeecC
Confidence            66999999999999999999764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.026  Score=30.81  Aligned_cols=19  Identities=21%  Similarity=0.212  Sum_probs=16.0

Q ss_pred             ceEEEEecCCCCceeEEEE
Q psy12134         96 GTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        96 ~~l~i~~~~~~d~g~y~~~  114 (139)
                      ..|.|.+++.+|+|.|.|.
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~   97 (118)
T d1qfoa_          79 CNLLLKDLKPEDSGTYNFR   97 (118)
T ss_dssp             CCEEECSCCGGGCEEEEEE
T ss_pred             EEEEECCCChhHCEEEEEE
Confidence            3699999999999999443

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.97  E-value=0.017  Score=31.81  Aligned_cols=21  Identities=19%  Similarity=0.233  Sum_probs=19.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.++..+|++.|.|.+.
T Consensus        71 ~~L~I~~~~~~DsA~YyCa~~   91 (107)
T d1mexl1          71 FTLTINNVQSEDLAEYFCQQY   91 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEEC
T ss_pred             eeeeechhheecceeEEEeEC
Confidence            669999999999999999864

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.013  Score=31.94  Aligned_cols=37  Identities=11%  Similarity=0.047  Sum_probs=23.5

Q ss_pred             eEEEECCEEeee---------cCCeE---EEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLY---------NRESL---DLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~~~L---~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |+|++||.++..         .+++.   ..-.+..++.+.|+|++.+.
T Consensus        38 v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          38 VDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHV   86 (100)
T ss_dssp             EEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             EEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeC
Confidence            789999987632         12222   11234556677899999874

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.97  E-value=0.029  Score=30.95  Aligned_cols=55  Identities=9%  Similarity=0.131  Sum_probs=36.2

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCCCcEEEEc----Cee----------------------------eecceEEEEecCCC
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANPPAKRFDE----GTR----------------------------FDEGTVTAKVLQPF  106 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~----~~~----------------------------~~~~~l~i~~~~~~  106 (139)
                      +.|....+.+|+++.|.|..... ...++|-    +..                            .....|.|..+..+
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   81 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPS   81 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTT
T ss_pred             ECCCEEEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccc
Confidence            44555666789999999986532 3456771    110                            01235888899999


Q ss_pred             CceeE-EEE
Q psy12134        107 SERTL-SVQ  114 (139)
Q Consensus       107 d~g~y-~~~  114 (139)
                      |++.| .|.
T Consensus        82 Dsa~YyCA~   90 (112)
T d2cdeb1          82 HTSQYLCAS   90 (112)
T ss_dssp             TCSEEEEEE
T ss_pred             ccccEEEEE
Confidence            99999 443

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.92  E-value=0.014  Score=31.71  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=22.7

Q ss_pred             eEEEECCEEeeec---------CCe---EEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN---------RES---LDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~~~---L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |+|+++|.++...         ++.   .....+...+.+.|+|++.+.
T Consensus        37 V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          37 IQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHD   85 (99)
T ss_dssp             EEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             EEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeC
Confidence            7899999875321         111   111233455667899999875

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=94.91  E-value=0.018  Score=31.68  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=19.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|+|.|-|.+.
T Consensus        72 ~~L~I~~~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          72 FTLTISRLEPEDFAVYYCQQY   92 (108)
T ss_dssp             EEEEESSCCGGGCSEEEEEEC
T ss_pred             EEEEehHheecccEEEeeecC
Confidence            569999999999999999875

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.89  E-value=0.023  Score=31.18  Aligned_cols=22  Identities=23%  Similarity=0.526  Sum_probs=19.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|....
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          71 YSLTISSLEYEDMGIYYCLQYD   92 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEccccccCCcCCEEEEeeecc
Confidence            6799999999999999997654

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.89  E-value=0.01  Score=33.09  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=19.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.++..+|+|.|.|.+.
T Consensus        73 ~~L~I~~~~~~Dsg~YyCa~~   93 (115)
T d1i9ea_          73 FHLRKASVHWSDSAVYFCAVS   93 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEecccccccccceeccccc
Confidence            679999999999999999875

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.88  E-value=0.011  Score=33.37  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=18.5

Q ss_pred             eEEEcccCCCCCEEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      .|+|.+++.+|+|.|.|.+.
T Consensus        83 ~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          83 VLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEcccccCCCEEEEeeEe
Confidence            69999999999999999875

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=94.87  E-value=0.015  Score=32.39  Aligned_cols=24  Identities=17%  Similarity=0.117  Sum_probs=20.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ..|.|.+++.+|+|.|.|.+....
T Consensus        76 ~~L~I~~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          76 FHLVISPVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECTT
T ss_pred             EeeeecCccccccccceeeEecCC
Confidence            468999999999999999887543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=94.86  E-value=0.019  Score=31.52  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=19.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        70 ~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          70 FTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             EEEEEESCCGGGCSEEEEEEEC
T ss_pred             EEEEEccccccCCCcEeeeeCC
Confidence            5699999999999999998754

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.83  E-value=0.04  Score=30.87  Aligned_cols=56  Identities=16%  Similarity=0.114  Sum_probs=35.6

Q ss_pred             ecCceEeeCCCCeEEEEEEeeeCC--CcEEEE----cCee------------------------e------ecceEEEEe
Q psy12134         59 VEKQWIHTAPDMRAEIICNVYANP--PAKRFD----EGTR------------------------F------DEGTVTAKV  102 (139)
Q Consensus        59 ~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~~----~~~~------------------------~------~~~~l~i~~  102 (139)
                      +++..+.+.+|++++|.|...+..  ...++|    .+..                        .      ....|.|.+
T Consensus         6 Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~   85 (120)
T d1ypzf1           6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS   85 (120)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred             cCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccc
Confidence            334445556899999999876432  234566    1110                        0      112588999


Q ss_pred             cCCCCceeE-EEE
Q psy12134        103 LQPFSERTL-SVQ  114 (139)
Q Consensus       103 ~~~~d~g~y-~~~  114 (139)
                      +..+|++.| .|.
T Consensus        86 l~~~Dsa~YyCA~   98 (120)
T d1ypzf1          86 LEEEDEAIYYCSY   98 (120)
T ss_dssp             CCGGGCSEEEEEE
T ss_pred             cccccceeEEEEE
Confidence            999999999 554

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=94.83  E-value=0.02  Score=31.19  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        68 ~~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          68 VTLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEE
T ss_pred             cCceEcCcchhHCceEEeeecC
Confidence            6799999999999999997653

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.044  Score=30.16  Aligned_cols=51  Identities=14%  Similarity=0.109  Sum_probs=33.1

Q ss_pred             EeeCCCCeEEEEEEeeeC--CCcEEEEc----Cee-----------------------e----ec--ceEEEEecCCCCc
Q psy12134         64 IHTAPDMRAEIICNVYAN--PPAKRFDE----GTR-----------------------F----DE--GTVTAKVLQPFSE  108 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~--p~~~~~~~----~~~-----------------------~----~~--~~l~i~~~~~~d~  108 (139)
                      ..+.+|+++.|.|.....  .....+|-    +..                       .    ..  -.|+|.++..+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            466789999999986532  33445661    110                       0    11  2488889999999


Q ss_pred             eeE-EEE
Q psy12134        109 RTL-SVQ  114 (139)
Q Consensus       109 g~y-~~~  114 (139)
                      |.| .+.
T Consensus        89 g~Y~Cav   95 (113)
T d1smoa_          89 GLYQCVI   95 (113)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEE
Confidence            999 443

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.013  Score=32.62  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        77 ~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          77 FVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             hhcEEccCCCCCCEEEeEeEcC
Confidence            4699999999999999999763

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.025  Score=30.93  Aligned_cols=22  Identities=9%  Similarity=0.057  Sum_probs=16.0

Q ss_pred             CCCCeEEEEEEeeeCCCc--EEEE
Q psy12134         67 APDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      ..++.++|.|.+.+.-|.  .+.|
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W   40 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQW   40 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEE
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEE
Confidence            346789999999886543  4577

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=94.70  E-value=0.012  Score=32.07  Aligned_cols=37  Identities=8%  Similarity=0.060  Sum_probs=22.4

Q ss_pred             eEEEECCEEeeec----------CCeEE---EcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------RESLD---LDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~---i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |+|++||.++...          ++...   .-.+...+.+.|+|++.+.
T Consensus        36 v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (100)
T d1muja1          36 ITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHW   85 (100)
T ss_dssp             EEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             EEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEEC
Confidence            7899998765321          11111   1133445677899999875

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.69  E-value=0.028  Score=30.72  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=18.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|+|.|.|...
T Consensus        70 ~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          70 FTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EEeEECCcChhhCCCcccccc
Confidence            679999999999999999754

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.68  E-value=0.031  Score=30.76  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=19.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|...+
T Consensus        71 ~~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          71 FTLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             EEEEECSCCTTCCSEEEEEECS
T ss_pred             EEeEeeeeEeccceEEEEeeCC
Confidence            4799999999999999997654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.66  E-value=0.029  Score=30.85  Aligned_cols=22  Identities=9%  Similarity=0.203  Sum_probs=19.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          73 YTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             eEEEEeeceeCcCceEEEeecC
Confidence            5699999999999999998653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=94.64  E-value=0.023  Score=31.40  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|-|.+.+
T Consensus        75 ~~L~I~~~~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          75 FTLIIDPVEADDVATYYCQQTN   96 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEEcccccccCccEEEeecC
Confidence            6799999999999999998754

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=94.63  E-value=0.014  Score=32.42  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        66 ~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          66 FSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             eeeeecccccCCcceEeeeeec
Confidence            4799999999999999999854

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=94.57  E-value=0.022  Score=31.31  Aligned_cols=21  Identities=14%  Similarity=0.184  Sum_probs=18.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|+|.|-|...
T Consensus        71 ~~L~I~~l~~~DsA~YyCa~~   91 (107)
T d1tjgl1          71 FTLTISTLRPEDFATYYCQQL   91 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEEC
T ss_pred             EEEEeccceeCcCceEEEEEC
Confidence            569999999999999999754

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=94.52  E-value=0.045  Score=30.41  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|++.|.|.+..
T Consensus        72 ~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          72 ASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eeeEecccCcccCceEEEeecC
Confidence            6799999999999999998753

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=94.50  E-value=0.036  Score=30.60  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        75 ~~L~I~~~~~~DsA~YyCa~~~   96 (111)
T d2gsia1          75 FTLNIHPVEEEDAATYYCSHIR   96 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             hhcccccccccCCceEEEEECC
Confidence            5699999999999999997643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.41  E-value=0.027  Score=31.00  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|....
T Consensus        74 ~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          74 FSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCCHhhCEEEEEeeCC
Confidence            6688999999999999998753

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.33  E-value=0.018  Score=31.97  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          73 FHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEESS
T ss_pred             EEEeeccccccCCccceeeecCC
Confidence            46999999999999999998754

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.29  E-value=0.019  Score=31.68  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        69 ~~L~I~~~~~~Dsa~YyCa~~~   90 (110)
T d2esvd1          69 STLILPHATLRDTAVYYCIVVR   90 (110)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eeehhcccccCCceEEEEEEeC
Confidence            6699999999999999998753

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=94.29  E-value=0.017  Score=32.13  Aligned_cols=23  Identities=26%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.++..+|+|.|.|.+...
T Consensus        65 ~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          65 FSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             EEEEECSCCGGGCEEEEEEECBT
T ss_pred             eeeEecCCcCccCEEEeEEEecC
Confidence            47999999999999999987644

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.28  E-value=0.023  Score=31.45  Aligned_cols=24  Identities=13%  Similarity=0.159  Sum_probs=20.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ..|.|.+++.+|+|.|.|.+....
T Consensus        72 ~~L~i~~~~~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          72 STLYIAASQPGDSATYLCAVRPTS   95 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEESS
T ss_pred             EEeeeecCCCCCCcEEeEeEecCC
Confidence            579999999999999999987543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.26  E-value=0.018  Score=32.04  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        73 ~~L~I~~~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          73 FHLQKSSAQLSDSALYYCALFLA   95 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEEC
T ss_pred             EEeeccccccccCccceEEEEcC
Confidence            56999999999999999987654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.26  E-value=0.043  Score=30.27  Aligned_cols=55  Identities=11%  Similarity=0.006  Sum_probs=35.9

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCe--e--------------------------ee---c--ceEEEEecC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGT--R--------------------------FD---E--GTVTAKVLQ  104 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~--~--------------------------~~---~--~~l~i~~~~  104 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .+.  .                          ..   .  -.|.+..++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            4567899999999998765432  345    110  0                          00   1  136777888


Q ss_pred             CCCceeE-EEEcccC
Q psy12134        105 PFSERTL-SVQDKIG  118 (139)
Q Consensus       105 ~~d~g~y-~~~n~~g  118 (139)
                      .+|.+.| .|+..-|
T Consensus        90 ~eDTAvYYCAr~~~g  104 (109)
T d2ck0h1          90 TEDTGIYYCVRGRDG  104 (109)
T ss_dssp             GGGCEEEEEEEECTT
T ss_pred             HhHCEEEEEEEcCCC
Confidence            9999999 7776544

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.24  E-value=0.055  Score=30.23  Aligned_cols=54  Identities=7%  Similarity=0.054  Sum_probs=35.1

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCc--EEEE----cCee-------------------------e-e---c--ceEEEEecCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPA--KRFD----EGTR-------------------------F-D---E--GTVTAKVLQP  105 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~--~~~~----~~~~-------------------------~-~---~--~~l~i~~~~~  105 (139)
                      ...+.+|+++.|.|.+.+....  .+.|    .+..                         . .   .  -.|.|..++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            3456789999999999876533  2345    1110                         0 0   1  1477888889


Q ss_pred             CCceeE-EEEcc
Q psy12134        106 FSERTL-SVQDK  116 (139)
Q Consensus       106 ~d~g~y-~~~n~  116 (139)
                      +|.+.| .|+..
T Consensus        89 eDtAvYYCAr~~  100 (117)
T d1mfah1          89 EDSAVYYCTRGG  100 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEeccC
Confidence            999999 77653

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.22  E-value=0.026  Score=31.24  Aligned_cols=24  Identities=13%  Similarity=0.285  Sum_probs=20.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ..|.|.+++.+|+|.|.|.+....
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          73 IGLIITATQIEDSAVYFCAMRGDY   96 (115)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECCC
T ss_pred             EEEEECCCCccccccccceeecCC
Confidence            569999999999999999986543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.21  E-value=0.041  Score=30.46  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|...+
T Consensus        77 ~~L~I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          77 FTLKISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             ccCccCCCCcccCEEEEEEECC
Confidence            5799999999999999996543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.21  E-value=0.045  Score=30.26  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=18.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.++..+|+|.|.|...
T Consensus        76 ~~L~I~~~~~eDsAvYYC~~~   96 (112)
T d1ncwl1          76 FTLKISRVEAEDLGVYYCWQG   96 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEECccccCcCEeEEEEcC
Confidence            569999999999999999653

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=94.15  E-value=0.0074  Score=30.10  Aligned_cols=33  Identities=18%  Similarity=0.354  Sum_probs=25.4

Q ss_pred             eEEEECCEEee-ecCCeEEEcccCCCCCEEEEEE
Q psy12134          2 LVIFFSKIELL-YNRESLDLDRVTLKLAGLYQCI   34 (139)
Q Consensus         2 ~~W~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~   34 (139)
                      ++|+++..... .....|-|.....+-.|.|.|.
T Consensus        19 I~w~k~~~~~~~~~~ktlnLG~~~~DPRGiY~C~   52 (66)
T d1xmwa2          19 ITLLQGTAGQEVSDNKTLNLGKRIEDPRGMYQCG   52 (66)
T ss_dssp             CEEEEECCCCBSSSSSBBCCBCSTTCCEEEEECC
T ss_pred             EEEccCccccccCCCcEEeCCCcccCCCcceECC
Confidence            78999865333 3456788888888889999994

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.10  E-value=0.067  Score=29.33  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        73 ~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          73 STLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCcccCCCceEEEeeeC
Confidence            5799999999999999998653

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.021  Score=31.86  Aligned_cols=22  Identities=14%  Similarity=0.308  Sum_probs=19.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        77 ~~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          77 VTFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCCcccCeEEEEEEec
Confidence            4699999999999999998754

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.07  E-value=0.022  Score=31.71  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        75 ~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          75 VNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEhhcCccccCEeEEEEEec
Confidence            6799999999999999998763

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.05  E-value=0.047  Score=30.48  Aligned_cols=52  Identities=8%  Similarity=0.094  Sum_probs=34.7

Q ss_pred             eeCCCCeEEEEEEeeeCCCc--EEEE----cCe--e----------------------e------ecceEEEEecCCCCc
Q psy12134         65 HTAPDMRAEIICNVYANPPA--KRFD----EGT--R----------------------F------DEGTVTAKVLQPFSE  108 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~--~~~~----~~~--~----------------------~------~~~~l~i~~~~~~d~  108 (139)
                      .+.+|+++.|.|.+.+....  .+.|    .+.  .                      .      +.-.|.|..++.+|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDt   90 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccc
Confidence            45689999999999876543  3355    111  0                      0      012478888999999


Q ss_pred             eeE-EEEcc
Q psy12134        109 RTL-SVQDK  116 (139)
Q Consensus       109 g~y-~~~n~  116 (139)
                      +.| .|+..
T Consensus        91 AvYyCAr~~   99 (116)
T d7fabh1          91 AVYYCARNL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEeeeec
Confidence            999 76654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=94.05  E-value=0.04  Score=29.91  Aligned_cols=34  Identities=9%  Similarity=0.108  Sum_probs=22.0

Q ss_pred             eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|++||.++...          +      +.|.+   ...+...|+|++.+.
T Consensus        38 v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~   87 (101)
T d1fnga1          38 VTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDFYDCEVDHW   87 (101)
T ss_dssp             EEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECT
T ss_pred             EEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCEEEEEEEEC
Confidence            7899999876421          1      33433   334456799999875

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=94.04  E-value=0.038  Score=29.89  Aligned_cols=37  Identities=8%  Similarity=0.049  Sum_probs=22.3

Q ss_pred             eEEEECCEEeeec----------CCeEE---EcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------RESLD---LDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~---i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |+|++||.++...          ++...   .-.+...+...|+|++.+.
T Consensus        38 v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          38 ITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHW   87 (99)
T ss_dssp             EEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             EEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            7899999876321          11111   1133445566899999875

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.04  E-value=0.03  Score=30.97  Aligned_cols=23  Identities=26%  Similarity=0.510  Sum_probs=20.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.++..+|+|.|.|.+...
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (113)
T d1h5ba_          71 STLHIRDAQLEDSGTYFCAAEAS   93 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECS
T ss_pred             eEEEECCCCHhHCEEEEEEecCC
Confidence            57999999999999999988643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.01  E-value=0.036  Score=30.62  Aligned_cols=22  Identities=14%  Similarity=0.247  Sum_probs=19.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|....
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          73 AALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEE
T ss_pred             eeeecCCCCccccEeEEEEccc
Confidence            6799999999999999998653

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=94.00  E-value=0.046  Score=29.52  Aligned_cols=37  Identities=8%  Similarity=0.061  Sum_probs=22.7

Q ss_pred             eEEEECCEEeeec----------CCeEE---EcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------RESLD---LDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~L~---i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ++|++||..+...          ++...   .-.+...+...|+|++.+.
T Consensus        36 v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~   85 (98)
T d1hdmb1          36 ITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHI   85 (98)
T ss_dssp             EEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             EEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeC
Confidence            7899999876321          11111   1134455566899999875

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.00  E-value=0.1  Score=29.55  Aligned_cols=55  Identities=9%  Similarity=0.056  Sum_probs=36.5

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEE--EE----cCe--e-----------------------e------ecceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKR--FD----EGT--R-----------------------F------DEGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~--~~----~~~--~-----------------------~------~~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+..-..+  .|    .+.  .                       .      +.-.|.+..++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSD   89 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecccc
Confidence            45678999999999998765544  44    110  0                       0      0123677788899


Q ss_pred             CceeE-EEEcccC
Q psy12134        107 SERTL-SVQDKIG  118 (139)
Q Consensus       107 d~g~y-~~~n~~g  118 (139)
                      |.+.| .|....+
T Consensus        90 DTA~YYCAr~~~~  102 (128)
T d2nxyd1          90 DTAVYFCAGVYEG  102 (128)
T ss_dssp             GCEEEEEEEEECS
T ss_pred             CceEEEEeEEecc
Confidence            99999 7766544

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.00  E-value=0.014  Score=32.01  Aligned_cols=21  Identities=29%  Similarity=0.294  Sum_probs=19.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.++..+|+|.|.|.+.
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~   91 (110)
T d1u3ha1          71 LSLHIADSQPGDSATYFCAAS   91 (110)
T ss_dssp             EEEEESSCCTTSCSEEEECCE
T ss_pred             eEeEeccCCCCCceeEeeeec
Confidence            579999999999999999875

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.98  E-value=0.15  Score=28.50  Aligned_cols=53  Identities=9%  Similarity=0.048  Sum_probs=35.3

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEE--EE----cCe--e----------------------e-e---c--ceEEEEecCCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKR--FD----EGT--R----------------------F-D---E--GTVTAKVLQPFS  107 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~--~~----~~~--~----------------------~-~---~--~~l~i~~~~~~d  107 (139)
                      ..+.+|+++.|.|.+.+.....+  .|    .+.  .                      . .   .  -.|.|..++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            35578999999999988664433  55    111  0                      0 0   1  147888899999


Q ss_pred             ceeE-EEEcc
Q psy12134        108 ERTL-SVQDK  116 (139)
Q Consensus       108 ~g~y-~~~n~  116 (139)
                      .+.| .|...
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999 66554

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.94  E-value=0.066  Score=29.99  Aligned_cols=55  Identities=11%  Similarity=0.122  Sum_probs=36.3

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE------cCee-----------------------e----ec--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD------EGTR-----------------------F----DE--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~------~~~~-----------------------~----~~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|      .+..                       .    ..  -.|.+..++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCC
Confidence            4557899999999998875433  345      1110                       0    01  14778888999


Q ss_pred             CceeE-EEEcccC
Q psy12134        107 SERTL-SVQDKIG  118 (139)
Q Consensus       107 d~g~y-~~~n~~g  118 (139)
                      |.+.| .|+...|
T Consensus        90 DTAvYYCAr~~~~  102 (119)
T d1eapb1          90 DSAVYFCKRSYYG  102 (119)
T ss_dssp             GCEEEEEEECCCS
T ss_pred             cceEEEEEEeccC
Confidence            99999 7776544

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=93.88  E-value=0.048  Score=30.11  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=19.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|+|.|.|.+.
T Consensus        77 ~~L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          77 FTLTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EeEEecccccCCCeEEEeccc
Confidence            569999999999999999864

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.86  E-value=0.017  Score=31.73  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+.+
T Consensus        70 ~~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          70 YSFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             EEEEECSCCGGGCSEEEEEECS
T ss_pred             eeeEehhhcccCCEeEEEEEeC
Confidence            5799999999999999998753

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=93.85  E-value=0.048  Score=29.29  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=23.2

Q ss_pred             eEEEECCEEeeec----------CCe---EEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------RES---LDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~~~---L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|+++|.++...          ++.   ...-.+...+...|+|++.+.
T Consensus        35 v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   84 (97)
T d1uvqb1          35 VRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHP   84 (97)
T ss_dssp             EEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECT
T ss_pred             EEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeC
Confidence            7899999775321          111   112244566677899999875

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.85  E-value=0.044  Score=30.13  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|....
T Consensus        74 ~~L~i~~l~~~Dsa~YyCA~~~   95 (111)
T d1cd0a_          74 ASLTISGLKTEDEADYYCQSYD   95 (111)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             cccccccCCcccCcEEEEeecc
Confidence            5799999999999999998654

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.84  E-value=0.094  Score=28.54  Aligned_cols=26  Identities=15%  Similarity=0.165  Sum_probs=17.8

Q ss_pred             CCCeEEEEEEeeeCCCc--EEEE--cCeee
Q psy12134         68 PDMRAEIICNVYANPPA--KRFD--EGTRF   93 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~--~~~~--~~~~~   93 (139)
                      .+..+.|.|.+.+.-|.  .+.|  ++...
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~   48 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSER   48 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEc
Confidence            46789999999886544  4577  44443

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.0076  Score=32.89  Aligned_cols=49  Identities=14%  Similarity=0.190  Sum_probs=31.8

Q ss_pred             eeCCCCeEEEEEEeeeCCCc----EEEEcCe--e--------------------e---ecceEEEEecCCCCceeEEE
Q psy12134         65 HTAPDMRAEIICNVYANPPA----KRFDEGT--R--------------------F---DEGTVTAKVLQPFSERTLSV  113 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~----~~~~~~~--~--------------------~---~~~~l~i~~~~~~d~g~y~~  113 (139)
                      .+..|++++|.|........    ..+|...  .                    .   .+.+|.|.+++.+|+|.|.|
T Consensus         5 t~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            44579999999976543321    2355111  1                    0   13479999999999999944

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.80  E-value=0.027  Score=31.09  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          73 STLKIQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCCCcCCCEEEEEeeeC
Confidence            5699999999999999998763

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.79  E-value=0.069  Score=29.85  Aligned_cols=26  Identities=12%  Similarity=-0.015  Sum_probs=19.1

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcE--EEE
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAK--RFD   88 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~--~~~   88 (139)
                      ...+.+|+++.|.|.+.+.....  +.|
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~W   36 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHW   36 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceec
Confidence            34567899999999998876443  355

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.22  Score=27.39  Aligned_cols=49  Identities=10%  Similarity=0.090  Sum_probs=32.2

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCc---EEEE----cCe--e-------------------------eecceEEEEecCCCCc
Q psy12134         63 WIHTAPDMRAEIICNVYANPPA---KRFD----EGT--R-------------------------FDEGTVTAKVLQPFSE  108 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~---~~~~----~~~--~-------------------------~~~~~l~i~~~~~~d~  108 (139)
                      ...+.+|..+.|.|........   .++|    .+.  .                         .....|.|.++..+|.
T Consensus         8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (118)
T d1i8lc_           8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDT   87 (118)
T ss_dssp             EEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGC
T ss_pred             EEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCC
Confidence            3455678999999987543222   2456    111  0                         0123699999999999


Q ss_pred             eeE
Q psy12134        109 RTL  111 (139)
Q Consensus       109 g~y  111 (139)
                      |.|
T Consensus        88 a~Y   90 (118)
T d1i8lc_          88 GLY   90 (118)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=93.73  E-value=0.037  Score=30.52  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=20.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        73 ~~L~I~~l~~~Dsa~YyCa~~~~   95 (112)
T d1lgva1          73 ASLTISGLQAEDEADYYCSSYDG   95 (112)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECS
T ss_pred             eeEEeCcCccccCEEEEEeeecC
Confidence            66999999999999999987653

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.025  Score=30.71  Aligned_cols=37  Identities=11%  Similarity=0.116  Sum_probs=23.1

Q ss_pred             eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|+++|.++...          +      +.|.|..-.-.....|+|++.+.
T Consensus        39 v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   91 (102)
T d1q0xl2          39 VDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHE   91 (102)
T ss_dssp             EEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEET
T ss_pred             EEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            7899999875321          1      34444333333456899999864

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.63  E-value=0.045  Score=30.21  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~DSa~YyCa~~~   93 (114)
T d1ogae1          72 FPLTVTSAQKNPTAFYLCASSS   93 (114)
T ss_dssp             CCEEECSCCSCCCEEEEEEEES
T ss_pred             EEEEECcCCcCCceeEEEeecc
Confidence            5699999999999999997764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.61  E-value=0.027  Score=31.05  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=19.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.++..+|+|.|.|.+.
T Consensus        71 ~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          71 FSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEEccccccCCeeEEEeee
Confidence            679999999999999999875

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.03  Score=31.19  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        75 ~~L~I~~l~~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          75 VNLTIQGLRAMDTGLYICKVEL   96 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEeeccccCCCEEEEEeEec
Confidence            5799999999999999998764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.47  E-value=0.044  Score=30.38  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (115)
T d1ogad1          71 SSLHITAAQPGDTGLYLCAGAG   92 (115)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEC
T ss_pred             eeeeecCCCccceeeEcccccC
Confidence            6799999999999999998764

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=93.47  E-value=0.13  Score=28.76  Aligned_cols=53  Identities=8%  Similarity=0.058  Sum_probs=34.7

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc--EEEE----cCee-------------------------e------ecceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPA--KRFD----EGTR-------------------------F------DEGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~--~~~~----~~~~-------------------------~------~~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+....  .+.|    .|..                         .      +.-.|.+..++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~e   89 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCC
Confidence            456789999999999876533  2345    1110                         0      1124677788899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        90 DtAvYYCAr~~  100 (118)
T d1ct8b1          90 DSAIYYCARYR  100 (118)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEeeec
Confidence            99999 77654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.41  E-value=0.031  Score=30.44  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=18.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.++..+|+|.|.|...
T Consensus        69 ~~L~I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          69 YSLTISSMETEDAATYYCQQW   89 (104)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEecccCcccCCeEEEEec
Confidence            579999999999999999753

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.38  E-value=0.0095  Score=32.18  Aligned_cols=24  Identities=17%  Similarity=0.182  Sum_probs=20.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ..|.|.+++.+|+|.|.|.+....
T Consensus        64 ~~L~I~~~~~~Dsa~YyCA~~~~~   87 (96)
T d1ymmd1          64 SSLLITASRAADTASYFCATDTTS   87 (96)
T ss_dssp             CCBCCSSCCSTTCSCCEEEEEETT
T ss_pred             cccCcCCCCcccCEEEeEeEecCC
Confidence            569999999999999999886543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.36  E-value=0.13  Score=28.73  Aligned_cols=53  Identities=8%  Similarity=0.093  Sum_probs=34.5

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCe--e-----------------------e-e---c--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGT--R-----------------------F-D---E--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~--~-----------------------~-~---~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+..-..  +.|    .+.  .                       . .   .  -.|.+..++.+
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~e   88 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSE   88 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCC
Confidence            4567899999999998765433  355    111  0                       0 0   1  13777888899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        89 DtAvYYCAr~~   99 (117)
T d1um5h1          89 DSAVYYCARSS   99 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecc
Confidence            99999 66543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.35  E-value=0.086  Score=29.41  Aligned_cols=52  Identities=10%  Similarity=0.052  Sum_probs=34.3

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCe--e------------------------e---ec--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGT--R------------------------F---DE--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~--~------------------------~---~~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .+.  .                        .   ..  -.|.+..++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            4567899999999999876433  344    110  0                        0   01  23777788999


Q ss_pred             CceeE-EEEc
Q psy12134        107 SERTL-SVQD  115 (139)
Q Consensus       107 d~g~y-~~~n  115 (139)
                      |.+.| .|..
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jpth1          90 DTAVYYCARD   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeec
Confidence            99999 6654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=93.34  E-value=0.028  Score=31.02  Aligned_cols=22  Identities=14%  Similarity=0.182  Sum_probs=19.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~Dsa~YyCA~~~   93 (111)
T d1rzfl1          72 ATLGITGLQTGDEADYYCGTWD   93 (111)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEE
T ss_pred             eeeEEeeeccccCcceEEeecC
Confidence            6799999999999999998754

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.049  Score=29.00  Aligned_cols=37  Identities=8%  Similarity=-0.049  Sum_probs=22.3

Q ss_pred             eEEEECCEEeeec---------CCe---EEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN---------RES---LDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~~~---L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|++||.++...         ++.   .....+...+...|+|++.+.
T Consensus        34 v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~   82 (94)
T d1t7va1          34 VHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHS   82 (94)
T ss_dssp             EEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEET
T ss_pred             EEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEEC
Confidence            7899999875321         111   112233455666899999875

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.33  E-value=0.12  Score=28.95  Aligned_cols=53  Identities=9%  Similarity=0.093  Sum_probs=34.8

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cC--ee-----------------------e------ecceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EG--TR-----------------------F------DEGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~--~~-----------------------~------~~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  ..|    .|  ..                       .      +.-.|.+..++.+
T Consensus        10 ~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~e   89 (120)
T d1ad9b1          10 EVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSE   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCC
Confidence            4567899999999998866543  344    11  10                       0      0124677788899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        90 DTAvYYCAr~~  100 (120)
T d1ad9b1          90 DTAFYFCAREK  100 (120)
T ss_dssp             GCEEEEEEEEB
T ss_pred             cceEEEEEEcC
Confidence            99999 66654

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.30  E-value=0.049  Score=29.96  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.++..+|+|.|.|.+...
T Consensus        72 ~~L~I~~~~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          72 SEMNVSTLELGDSALYLCASSLA   94 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESS
T ss_pred             eEEEECCCCcccceeeeeeeeCC
Confidence            56999999999999999988643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.30  E-value=0.22  Score=27.31  Aligned_cols=49  Identities=10%  Similarity=0.081  Sum_probs=32.2

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCc---EEEE----cCee-------------------------e--ecceEEEEecCCCCc
Q psy12134         63 WIHTAPDMRAEIICNVYANPPA---KRFD----EGTR-------------------------F--DEGTVTAKVLQPFSE  108 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~---~~~~----~~~~-------------------------~--~~~~l~i~~~~~~d~  108 (139)
                      ...+..|.++.|.|........   .++|    .+..                         .  ....|.|.++..+|.
T Consensus         8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (117)
T d1dqta_           8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDT   87 (117)
T ss_dssp             EEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccC
Confidence            4455679999999997543222   2356    1111                         0  123689999999999


Q ss_pred             eeE
Q psy12134        109 RTL  111 (139)
Q Consensus       109 g~y  111 (139)
                      |.|
T Consensus        88 a~Y   90 (117)
T d1dqta_          88 GLY   90 (117)
T ss_dssp             EEE
T ss_pred             EeE
Confidence            999

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.27  E-value=0.12  Score=28.94  Aligned_cols=53  Identities=9%  Similarity=0.060  Sum_probs=34.3

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc--EEEE----cCee-------------------------e-e---c--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPA--KRFD----EGTR-------------------------F-D---E--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~--~~~~----~~~~-------------------------~-~---~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+....  .++|    .|..                         . .   .  -.|.|..++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            456789999999998875432  3456    1110                         0 0   1  13777888899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        90 DtA~YYCAr~~  100 (120)
T d1pg7x1          90 DSAVYYCARED  100 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEeeecC
Confidence            99999 77643

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.27  E-value=0.089  Score=29.29  Aligned_cols=24  Identities=8%  Similarity=0.097  Sum_probs=18.3

Q ss_pred             ceEeeCCCCeEEEEEEeeeCCCcE
Q psy12134         62 QWIHTAPDMRAEIICNVYANPPAK   85 (139)
Q Consensus        62 ~~~~~~~g~~~~l~C~~~~~p~~~   85 (139)
                      ....+.+|+++.|.|.+.+.....
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~   31 (116)
T d1mjuh1           8 GAELVKPGASVKLSCKASGYTFTN   31 (116)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGG
T ss_pred             CCcEECCCCCEEEEEEEccCcccc
Confidence            345667899999999999866443

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.018  Score=31.43  Aligned_cols=37  Identities=11%  Similarity=0.140  Sum_probs=23.8

Q ss_pred             eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|+++|.++...               .+.|.|..-.......|+|++.+.
T Consensus        40 v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~   91 (104)
T d1o0va1          40 ITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQ   91 (104)
T ss_dssp             EEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEET
T ss_pred             EEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEEC
Confidence            7899999876421               144555433333456799999875

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.19  E-value=0.098  Score=29.40  Aligned_cols=53  Identities=15%  Similarity=0.210  Sum_probs=35.3

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCee-------------------------e-e---c--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGTR-------------------------F-D---E--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~-------------------------~-~---~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .|..                         . .   .  -.|.+..++.+
T Consensus        11 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~e   90 (122)
T d1vgeh1          11 EVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPE   90 (122)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCC
Confidence            4567899999999998876433  345    1110                         0 0   1  13777788899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|...
T Consensus        91 DtA~YYCAr~~  101 (122)
T d1vgeh1          91 DTAVYYCARDP  101 (122)
T ss_dssp             GCEEEEEEEET
T ss_pred             cceEEEEeecC
Confidence            99999 77654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.12  E-value=0.04  Score=30.26  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=19.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          72 LSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCCcccccEEEEeeccC
Confidence            6799999999999999998763

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.07  E-value=0.17  Score=28.83  Aligned_cols=53  Identities=8%  Similarity=0.044  Sum_probs=35.1

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEE--EE----cCe--e------------------------ee-----cceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKR--FD----EGT--R------------------------FD-----EGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~--~~----~~~--~------------------------~~-----~~~l~i~~~~~~  106 (139)
                      ..+.+|.++.|.|.+.+.....+  .|    .+.  .                        ..     .-.|.+..++.+
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~e   88 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSD   88 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCC
Confidence            45678999999999988654433  45    111  0                        00     114677788899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|...
T Consensus        89 DtA~YYCAr~~   99 (133)
T d1rzfh1          89 DTAVYYCASNS   99 (133)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEeeecc
Confidence            99999 77664

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.1  Score=27.81  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=23.1

Q ss_pred             eEEEECCEEeeec---------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN---------R------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |.|++++.++...         +      +.|.+   ...+...|+|.+.+..
T Consensus        34 V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~~   83 (95)
T d1dr9a2          34 LSWLENGEELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGH   83 (95)
T ss_dssp             EEEEESSCEECCSEEEEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETT
T ss_pred             EEEecCCcEecccceeeEecCCCccEEEEEEEEc---cCCccceEEEEEEecC
Confidence            7899999876431         1      34444   3345678999998753

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=93.00  E-value=0.089  Score=28.94  Aligned_cols=20  Identities=30%  Similarity=0.622  Sum_probs=18.1

Q ss_pred             CeEEEcccCCCCCEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~   35 (139)
                      ..|.|.+++.+|++.|.|..
T Consensus        76 ~~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          76 FTLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEE
T ss_pred             EEEEECCccccCCceEEEEe
Confidence            56999999999999999954

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.036  Score=30.03  Aligned_cols=38  Identities=8%  Similarity=0.082  Sum_probs=23.6

Q ss_pred             eEEEECCEEeeec---------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN---------R------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |.|+++|.+....         +      +.|.|..-.....-.|+|++.+..
T Consensus        38 v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          38 VEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             EEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             EEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            7899999875321         1      445554333333457999998753

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.97  E-value=0.12  Score=28.76  Aligned_cols=21  Identities=10%  Similarity=0.172  Sum_probs=16.7

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc
Q psy12134         64 IHTAPDMRAEIICNVYANPPA   84 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~   84 (139)
                      ..+.+|+++.|.|.+.+....
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~   30 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFT   30 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSS
T ss_pred             ceECCCCCEEEEEEEcCCCCC
Confidence            455789999999999986544

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.94  E-value=0.034  Score=29.55  Aligned_cols=34  Identities=12%  Similarity=0.127  Sum_probs=22.0

Q ss_pred             eEEEECCEEeeec--------C------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN--------R------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|++||.++...        +      +.|.+   ...+...|+|++.+.
T Consensus        34 v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v---~~~~~~~ytC~V~H~   81 (91)
T d3frua1          34 FRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEV---KRGDEHHYQCQVEHE   81 (91)
T ss_dssp             EEEEETTEECCCCEEEEEECSSSCEEEEEEEEE---ETTCGGGEEEEEECT
T ss_pred             EEEEECCEeCCccCccceecCCCCEeEEEEEEE---CCCCCCEEEEEEEeC
Confidence            7899999875321        1      33444   334556899999864

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.93  E-value=0.09  Score=29.89  Aligned_cols=53  Identities=11%  Similarity=0.090  Sum_probs=34.5

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCe--e-----------------------e----ec--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGT--R-----------------------F----DE--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~--~-----------------------~----~~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .+.  .                       .    ..  -.|.+..++.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD   88 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC
Confidence            4567899999999998765332  345    111  0                       0    01  13777888899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        89 DtAvYyCAr~~   99 (130)
T d1rhhb1          89 DTAVYYCARDF   99 (130)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CcEEEEEEeec
Confidence            99999 66543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.88  E-value=0.11  Score=29.02  Aligned_cols=53  Identities=9%  Similarity=0.078  Sum_probs=34.6

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCe--e------------------------e---ec--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGT--R------------------------F---DE--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~--~------------------------~---~~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .+.  .                        .   ..  -.|.|..++.+
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            4567899999999998764332  345    110  0                        0   01  14788889999


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|...
T Consensus        90 DtAvYYCA~~~  100 (117)
T d1iqdb1          90 DTAVYYCAVPD  100 (117)
T ss_dssp             GCEEEEEEECS
T ss_pred             cceEEEEeEcC
Confidence            99999 66543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.24  Score=25.40  Aligned_cols=48  Identities=10%  Similarity=-0.026  Sum_probs=28.7

Q ss_pred             CCCCeEEEEEEeeeCCCcE--EEE--cCeee-----ecceEEEEecCCCCceeEEEE
Q psy12134         67 APDMRAEIICNVYANPPAK--RFD--EGTRF-----DEGTVTAKVLQPFSERTLSVQ  114 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~--~~~--~~~~~-----~~~~l~i~~~~~~d~g~y~~~  114 (139)
                      ..|..+.|+|.....+.+.  .+|  ++..+     .+......-...+++|.|.|.
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~tey~V~~~D~SGeY~CV   66 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCV   66 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEECGGGCCEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCceEEEEecCCCCceEEEE
Confidence            3588899999998765443  488  44432     222222222236788999443

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.80  E-value=0.16  Score=28.72  Aligned_cols=54  Identities=9%  Similarity=0.068  Sum_probs=35.6

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCcE--EEE----cCee--------------------------e---ec--ceEEEEecCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPAK--RFD----EGTR--------------------------F---DE--GTVTAKVLQP  105 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~--------------------------~---~~--~~l~i~~~~~  105 (139)
                      ...+.+|+++.|.|.+.+.....  +.|    .+..                          .   ..  -.|.+..++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            35667899999999999865433  345    1100                          0   01  2367778889


Q ss_pred             CCceeE-EEEcc
Q psy12134        106 FSERTL-SVQDK  116 (139)
Q Consensus       106 ~d~g~y-~~~n~  116 (139)
                      +|.+.| .|+..
T Consensus        89 eDtAvYYCAR~~  100 (127)
T d1n0xh1          89 ADTAVYYCARVG  100 (127)
T ss_dssp             GGCEEEEEEECC
T ss_pred             CCceEEEEEecc
Confidence            999999 77644

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=92.78  E-value=0.082  Score=29.47  Aligned_cols=51  Identities=14%  Similarity=0.108  Sum_probs=33.9

Q ss_pred             eeCCCCeEEEEEEeeeCCCcE--EEE----cCee------------------------e----ec--ceEEEEecCCCCc
Q psy12134         65 HTAPDMRAEIICNVYANPPAK--RFD----EGTR------------------------F----DE--GTVTAKVLQPFSE  108 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~------------------------~----~~--~~l~i~~~~~~d~  108 (139)
                      .+.+|+++.|.|.+.+.....  +.|    .|..                        .    ..  -.|.+..++.+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT   90 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence            456899999999998865433  345    1110                        0    01  1478888999999


Q ss_pred             eeE-EEEc
Q psy12134        109 RTL-SVQD  115 (139)
Q Consensus       109 g~y-~~~n  115 (139)
                      +.| .|+.
T Consensus        91 AvYYCAr~   98 (116)
T d1a2yb_          91 ARYYCARE   98 (116)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            999 6654

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.78  E-value=0.31  Score=27.40  Aligned_cols=53  Identities=11%  Similarity=0.062  Sum_probs=34.8

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcEE--EE----cCee-------------------------e------ecceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAKR--FD----EGTR-------------------------F------DEGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~~--~~----~~~~-------------------------~------~~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....+  .|    .+..                         .      +.-.|.+..++.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~e   88 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSE   88 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCC
Confidence            45678999999999988754433  45    1110                         0      1124677888899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        89 DTAvYYCAr~~   99 (126)
T d1lmka1          89 DSAVYYCARGE   99 (126)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecC
Confidence            99999 66543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=92.74  E-value=0.094  Score=29.39  Aligned_cols=52  Identities=10%  Similarity=0.084  Sum_probs=34.7

Q ss_pred             eeCCCCeEEEEEEeeeCCCcE--EEE----cCee-------------------------ee-----cceEEEEecCCCCc
Q psy12134         65 HTAPDMRAEIICNVYANPPAK--RFD----EGTR-------------------------FD-----EGTVTAKVLQPFSE  108 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~-------------------------~~-----~~~l~i~~~~~~d~  108 (139)
                      .+.+|+++.|.|.+.+.....  +.|    .+..                         ..     .-.|.|..++.+|.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt   90 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT   90 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence            457899999999998865433  355    1110                         00     12478888999999


Q ss_pred             eeE-EEEcc
Q psy12134        109 RTL-SVQDK  116 (139)
Q Consensus       109 g~y-~~~n~  116 (139)
                      +.| .|...
T Consensus        91 A~YYCAr~~   99 (120)
T d1dn0b1          91 AVYYCARPP   99 (120)
T ss_dssp             EEEEEEECS
T ss_pred             cEEEEEeeC
Confidence            999 66554

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.042  Score=29.37  Aligned_cols=34  Identities=12%  Similarity=0.070  Sum_probs=21.7

Q ss_pred             eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |+|+++|..+...          +      +.|.   +...+...|+|++.+.
T Consensus        34 vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~---v~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          34 LTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVV---VPSGEEQRYTCHVQHE   83 (95)
T ss_dssp             EEEEETTEECGGGCEECCCEECSSSCEEEEEEEE---EETTCGGGEEEEEECT
T ss_pred             EEEEECCEEcCCCceeccEEcCCCCeEEEEEEEE---EEcCCCCEEEEEEEEC
Confidence            7899999876421          1      2333   3344456799999874

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.11  Score=28.19  Aligned_cols=24  Identities=17%  Similarity=0.140  Sum_probs=16.9

Q ss_pred             CCeEEEEEEeeeCCCc--EEEE--cCee
Q psy12134         69 DMRAEIICNVYANPPA--KRFD--EGTR   92 (139)
Q Consensus        69 g~~~~l~C~~~~~p~~--~~~~--~~~~   92 (139)
                      ...+.|.|.+.+.-|.  .+.|  ++..
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~   47 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNAL   47 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEE
Confidence            5789999999986443  4577  4443

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.71  E-value=0.16  Score=28.19  Aligned_cols=52  Identities=10%  Similarity=0.047  Sum_probs=33.5

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc--EEEEc----Cee-------------------------e-e---c--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPA--KRFDE----GTR-------------------------F-D---E--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~--~~~~~----~~~-------------------------~-~---~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+....  .++|-    +..                         . .   .  ..|.|..++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            456789999999998875322  34551    110                         0 0   1  14778888899


Q ss_pred             CceeE-EEEc
Q psy12134        107 SERTL-SVQD  115 (139)
Q Consensus       107 d~g~y-~~~n  115 (139)
                      |.+.| .|..
T Consensus        90 DtAvYYCAr~   99 (115)
T d1f3dh1          90 DSAVYYCAND   99 (115)
T ss_dssp             GCEEEEEEEC
T ss_pred             CcEEEEEecc
Confidence            99999 6654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=92.69  E-value=0.062  Score=29.85  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.++..+|+|.|.|.+...
T Consensus        77 ~~L~i~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          77 STLTVTSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECS
T ss_pred             ccccccccccccCceEEEEEecC
Confidence            46999999999999999998643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.66  E-value=0.057  Score=29.05  Aligned_cols=35  Identities=14%  Similarity=0.129  Sum_probs=22.3

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCc--EEEE
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      .+|.+.+.+.. ....|+.++|.|.+.+..|.  .+.|
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W   39 (99)
T d1lk2b_           3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQM   39 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEE
Confidence            45666543221 23468889999999997554  3477

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=92.62  E-value=0.055  Score=29.78  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=19.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        73 ~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          73 FSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             CEEEESSCCGGGCEEEEEEEEC
T ss_pred             eeeEeccCccCCcccEEeeEcc
Confidence            5799999999999999998864

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.024  Score=30.99  Aligned_cols=38  Identities=13%  Similarity=0.255  Sum_probs=23.1

Q ss_pred             eEEEECCEEeeec-----------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN-----------R------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |.|+++|.++...           +      +.|.|..-...+...|+|++.+..
T Consensus        38 v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   92 (105)
T d1fp5a2          38 VQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA   92 (105)
T ss_dssp             EEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTT
T ss_pred             EEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            7899999875321           1      345443332234457999998753

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.56  E-value=0.039  Score=30.23  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=19.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|+|.|.|.+.
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          71 YSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             EEEECSCCCSCCCSEEEEEEC
T ss_pred             EEEEEeEeeecCCCcEEeeeC
Confidence            679999999999999999764

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.56  E-value=0.14  Score=28.63  Aligned_cols=53  Identities=15%  Similarity=0.203  Sum_probs=34.8

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCee-------------------------e------ecceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGTR-------------------------F------DEGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~-------------------------~------~~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+..-..  +.|    .+..                         .      +.-.|.+..++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcc
Confidence            4557899999999998865433  345    1110                         0      0124778888899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|...
T Consensus        90 DTAvYYCAr~~  100 (119)
T d1rz7h1          90 DTAVYYCAADP  100 (119)
T ss_dssp             GCEEEEEEECT
T ss_pred             cceEEEEeecC
Confidence            99999 77654

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.55  E-value=0.33  Score=27.09  Aligned_cols=51  Identities=14%  Similarity=0.127  Sum_probs=33.6

Q ss_pred             eeCCCCeEEEEEEeeeCCC----cEEEEc----Cee----------------------e--------ecceEEEEecCCC
Q psy12134         65 HTAPDMRAEIICNVYANPP----AKRFDE----GTR----------------------F--------DEGTVTAKVLQPF  106 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~----~~~~~~----~~~----------------------~--------~~~~l~i~~~~~~  106 (139)
                      .+.+|+++.|.|.+.+...    ...+|-    +..                      +        ..-.|.|..++.+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            4568999999999876431    234661    110                      0        0124888999999


Q ss_pred             CceeE-EEEc
Q psy12134        107 SERTL-SVQD  115 (139)
Q Consensus       107 d~g~y-~~~n  115 (139)
                      |.+.| .|..
T Consensus        91 DsAvYyCAr~  100 (120)
T d2agjh1          91 DTATYYCART  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeEec
Confidence            99999 6643

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.42  E-value=0.019  Score=31.32  Aligned_cols=38  Identities=11%  Similarity=-0.009  Sum_probs=22.9

Q ss_pred             eEEEECCEEeeec---------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN---------R------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |.|+++|.++...         +      +.|.|..-...+...|+|++.+..
T Consensus        39 v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~   91 (104)
T d1nfde2          39 VTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEG   91 (104)
T ss_dssp             EEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTT
T ss_pred             EEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECC
Confidence            7899999886431         1      223332222234457999998764

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.40  E-value=0.2  Score=27.85  Aligned_cols=53  Identities=13%  Similarity=0.070  Sum_probs=34.6

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc--EEEE----cCe--e-----------------------e-e---c--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPA--KRFD----EGT--R-----------------------F-D---E--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~--~~~~----~~~--~-----------------------~-~---~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+....  .+.|    .+.  .                       . .   .  -.|.+..++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            456789999999999876533  2355    111  0                       0 0   1  13778888999


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        90 DtAvYYCAr~~  100 (118)
T d1nlbh1          90 DTATYFCARFL  100 (118)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEeeeC
Confidence            99999 76544

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.4  Score=25.82  Aligned_cols=23  Identities=13%  Similarity=0.040  Sum_probs=17.4

Q ss_pred             eCCCCeEEEEEEeee-CCCc--EEEE
Q psy12134         66 TAPDMRAEIICNVYA-NPPA--KRFD   88 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~-~p~~--~~~~   88 (139)
                      +..|+.+.|.|.+.+ +|.+  .+.|
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W   38 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDL   38 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEE
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEE
Confidence            458999999999875 5644  4566

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=92.33  E-value=0.1  Score=28.67  Aligned_cols=22  Identities=18%  Similarity=0.480  Sum_probs=19.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        74 ~~L~I~~~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          74 SEMNMSALELEDSAMYFCASSL   95 (113)
T ss_dssp             EEEECCSCCGGGCEEECEEEES
T ss_pred             EEEEecccCcCCceeEEEEeec
Confidence            4688999999999999998764

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=92.28  E-value=0.064  Score=29.43  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      ..|.|.++..+|+|.|.|.+....
T Consensus        71 ~~L~i~~~~~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          71 FPLTLESARPSHTSQYLCASSENI   94 (112)
T ss_dssp             CCEEBSSCCTTTCSEEEEEEECSS
T ss_pred             eEeeeccccccccccEEEEEecCC
Confidence            569999999999999999887543

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=92.26  E-value=0.17  Score=27.26  Aligned_cols=39  Identities=21%  Similarity=0.207  Sum_probs=23.8

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCc--EEEE--cCeee
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KRFD--EGTRF   93 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~~--~~~~~   93 (139)
                      +|.+.+.+.. .+..|+..+|.|.+.++-|.  .+.|  +|...
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~   47 (101)
T d1fnga1           5 APEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPV   47 (101)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeec
Confidence            5555543221 23467788999999997543  4577  55543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=92.02  E-value=0.23  Score=27.68  Aligned_cols=54  Identities=9%  Similarity=0.009  Sum_probs=35.0

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc-EE--EE----cCeee------------------------------ecceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPA-KR--FD----EGTRF------------------------------DEGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~-~~--~~----~~~~~------------------------------~~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+..-. .+  .|    .+..+                              +.-.|.+..++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            355689999999999987542 23  45    11110                              0123777788899


Q ss_pred             CceeE-EEEccc
Q psy12134        107 SERTL-SVQDKI  117 (139)
Q Consensus       107 d~g~y-~~~n~~  117 (139)
                      |.+.| .|....
T Consensus        90 DTAvYYCAr~~~  101 (119)
T d1ncwh1          90 DTATYYCAGLLW  101 (119)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CceEEEEeEecc
Confidence            99999 665543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=92.00  E-value=0.062  Score=29.50  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~DsavYyCA~~~   93 (112)
T d2bnub1          72 FPLRLLSAAPSQTSVYFCASSY   93 (112)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEC
T ss_pred             EEEEECCCCHHHCEEEEEeecC
Confidence            5799999999999999998753

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.92  E-value=0.32  Score=27.30  Aligned_cols=53  Identities=8%  Similarity=0.035  Sum_probs=35.0

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCe--e-----------------------e------ecceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGT--R-----------------------F------DEGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~--~-----------------------~------~~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .+.  .                       .      +.-.|.+..++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (124)
T d1yedb1          10 ELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSE   89 (124)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCC
Confidence            4557899999999998865433  345    111  0                       0      0124778888999


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        90 DTAvYYCAR~~  100 (124)
T d1yedb1          90 DSAVYFCTRWG  100 (124)
T ss_dssp             GCEEEEEEECC
T ss_pred             cceEEEecccC
Confidence            99999 77654

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.86  E-value=0.054  Score=29.58  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=22.7

Q ss_pred             eEEEECCEEeeec-----------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN-----------R------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |.|+++|.++...           +      +.|.|..-.......|+|++.+..
T Consensus        39 v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          39 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             EEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             EEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            7899998875321           1      334443322223568999998754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=91.84  E-value=0.052  Score=29.75  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=19.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        72 ~~L~i~~~~~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          72 FHLQKASVQESDSAVYYCALSG   93 (110)
T ss_dssp             CCEEEEEECGGGCEEEEEEEEE
T ss_pred             EeeeecCcCcCCCcccceeecC
Confidence            6789999999999999998754

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.84  E-value=0.25  Score=28.12  Aligned_cols=52  Identities=8%  Similarity=0.019  Sum_probs=34.2

Q ss_pred             eeCCCCeEEEEEEeeeCCCcE--EEE----cCe--e-----------------------e------ecceEEEEecCCCC
Q psy12134         65 HTAPDMRAEIICNVYANPPAK--RFD----EGT--R-----------------------F------DEGTVTAKVLQPFS  107 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~--~~~----~~~--~-----------------------~------~~~~l~i~~~~~~d  107 (139)
                      .+.+|+++.|.|.+.+.....  +.|    .|.  .                       .      ..-.|.+..++.+|
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eD   90 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSED   90 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSS
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCccc
Confidence            456899999999998765332  345    110  0                       0      01247788899999


Q ss_pred             ceeE-EEEcc
Q psy12134        108 ERTL-SVQDK  116 (139)
Q Consensus       108 ~g~y-~~~n~  116 (139)
                      .+.| .|+-.
T Consensus        91 TAvYYCAr~~  100 (135)
T d1ieha_          91 TAVYYCAKYS  100 (135)
T ss_dssp             CEEEEEEEBS
T ss_pred             ceeeEEEEec
Confidence            9999 66643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.82  E-value=0.15  Score=28.80  Aligned_cols=53  Identities=6%  Similarity=0.031  Sum_probs=34.6

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCee-------------------------e-e---c--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGTR-------------------------F-D---E--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~-------------------------~-~---~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .+..                         . .   .  -.|.+..++.+
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~e   89 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSE   89 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcc
Confidence            4567899999999998765432  355    1110                         0 0   1  13677788899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        90 DtAvYYCAR~~  100 (125)
T d1rihh1          90 DSAVYYCARES  100 (125)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEeeeC
Confidence            99999 77653

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=91.80  E-value=0.19  Score=27.06  Aligned_cols=34  Identities=18%  Similarity=0.093  Sum_probs=22.5

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCc--EEEE
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      +|.+.+.+.. .+..|+..+|.|.+.++-|+  .+.|
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W   38 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITW   38 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEE
Confidence            5655543322 34568899999999997554  3577

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.79  E-value=0.18  Score=28.17  Aligned_cols=51  Identities=8%  Similarity=-0.006  Sum_probs=33.3

Q ss_pred             eeCCCCeEEEEEEeeeCCC--cEEEE----cCee-------------------------e----ec--ceEEEEecCCCC
Q psy12134         65 HTAPDMRAEIICNVYANPP--AKRFD----EGTR-------------------------F----DE--GTVTAKVLQPFS  107 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~--~~~~~----~~~~-------------------------~----~~--~~l~i~~~~~~d  107 (139)
                      .+.+|+++.|.|.+.+..-  ..++|    .+..                         .    ..  -.|.|..+..+|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            5568999999999876542  23455    1110                         0    01  148888999999


Q ss_pred             ceeE-EEEc
Q psy12134        108 ERTL-SVQD  115 (139)
Q Consensus       108 ~g~y-~~~n  115 (139)
                      .+.| .|..
T Consensus        91 sAvYYCA~~   99 (119)
T d1qnzh_          91 SAVYYCAIH   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            9999 6554

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=91.79  E-value=0.16  Score=26.84  Aligned_cols=44  Identities=14%  Similarity=0.093  Sum_probs=24.1

Q ss_pred             CCCeEEEEEEeeeCCCcE--EEE--cCeeeecceEEEEecCCCCceeE
Q psy12134         68 PDMRAEIICNVYANPPAK--RFD--EGTRFDEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~--~~~--~~~~~~~~~l~i~~~~~~d~g~y  111 (139)
                      .+..+.|.|.+.++-|..  +.|  ++.....+.........+..|+|
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty   61 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTY   61 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCE
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcE
Confidence            356789999999975543  467  44443322222333333444555

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=91.79  E-value=0.084  Score=29.45  Aligned_cols=23  Identities=17%  Similarity=0.249  Sum_probs=20.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.++..+|+|.|.|.....
T Consensus        75 ~~L~i~~~~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          75 AVLKILAPSERDEGSYYCACDTL   97 (120)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECC
T ss_pred             eecccccccccCCceeecCcccC
Confidence            67999999999999999987653

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.74  E-value=0.1  Score=29.07  Aligned_cols=52  Identities=13%  Similarity=0.151  Sum_probs=34.7

Q ss_pred             eeCCCCeEEEEEEeeeCCCcE--EEE----cCee------------------------e----ec--ceEEEEecCCCCc
Q psy12134         65 HTAPDMRAEIICNVYANPPAK--RFD----EGTR------------------------F----DE--GTVTAKVLQPFSE  108 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~------------------------~----~~--~~l~i~~~~~~d~  108 (139)
                      .+.+|+++.|.|.+.+.....  +.|    .|..                        .    ..  -.|.+..++.+|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt   90 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT   90 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence            456899999999998765433  345    1110                        0    01  2478888999999


Q ss_pred             eeE-EEEcc
Q psy12134        109 RTL-SVQDK  116 (139)
Q Consensus       109 g~y-~~~n~  116 (139)
                      +.| .|...
T Consensus        91 AvYYCAr~~   99 (117)
T d1c5db1          91 AIYFCTRED   99 (117)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEeccC
Confidence            999 76654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.71  E-value=0.2  Score=28.17  Aligned_cols=52  Identities=4%  Similarity=-0.039  Sum_probs=34.2

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCee-------------------------e------ecceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGTR-------------------------F------DEGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~-------------------------~------~~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .+..                         .      +.-.|.+..++.+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            4567899999999998865443  355    1110                         0      0123677788899


Q ss_pred             CceeE-EEEc
Q psy12134        107 SERTL-SVQD  115 (139)
Q Consensus       107 d~g~y-~~~n  115 (139)
                      |.+.| .|..
T Consensus        89 DtAvYYCAr~   98 (124)
T d1zvya1          89 DTAIYTCGAT   98 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            99999 6664

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.67  E-value=0.064  Score=29.98  Aligned_cols=22  Identities=18%  Similarity=0.298  Sum_probs=19.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          71 YTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             EEEEECSCCGGGCSEEEEEEES
T ss_pred             EEEEcccCccCCCeEEEeeccC
Confidence            5699999999999999997653

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=91.67  E-value=0.082  Score=29.02  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|+|.|-|.+...
T Consensus        70 ~~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          70 ATLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEET
T ss_pred             cceEEeeeccCCCEEEEEEecCC
Confidence            57899999999999999987643

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.64  E-value=0.43  Score=26.03  Aligned_cols=51  Identities=14%  Similarity=0.094  Sum_probs=32.7

Q ss_pred             EeeCCCCeEEEEEEeeeC--CCcEEEE----cCee-----------------------e-e---c--ceEEEEecCCCCc
Q psy12134         64 IHTAPDMRAEIICNVYAN--PPAKRFD----EGTR-----------------------F-D---E--GTVTAKVLQPFSE  108 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~--p~~~~~~----~~~~-----------------------~-~---~--~~l~i~~~~~~d~  108 (139)
                      ..+.+|+++.|.|...+.  .....+|    .+..                       . .   .  -.|+|..++.+|.
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDs   84 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDS   84 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCC
Confidence            456789999999987643  3334556    1110                       0 0   1  1477888999999


Q ss_pred             eeE-EEE
Q psy12134        109 RTL-SVQ  114 (139)
Q Consensus       109 g~y-~~~  114 (139)
                      |.| .|.
T Consensus        85 a~YyCa~   91 (110)
T d1u9ka_          85 GLYRCVI   91 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            999 554

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=91.60  E-value=0.055  Score=30.29  Aligned_cols=22  Identities=14%  Similarity=0.252  Sum_probs=19.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|....
T Consensus        79 ~~L~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          79 SILTIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EEEEECSCCGGGCSEEEEEECC
T ss_pred             ccccccccccccceeEEEEEcC
Confidence            4599999999999999997653

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.59  E-value=0.066  Score=28.22  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=21.2

Q ss_pred             eEEEECCEEeeec----------------CCeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------------RESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------------~~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |+|+++|..+...                .+.|.+.   ..+...|+|++.+.
T Consensus        34 v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~   83 (89)
T d2mhaa1          34 LTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQ   83 (89)
T ss_dssp             EEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECS
T ss_pred             EEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEEC
Confidence            7899999876421                1344443   33444699998764

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.58  E-value=0.11  Score=29.30  Aligned_cols=53  Identities=9%  Similarity=0.008  Sum_probs=34.4

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCee-------------------------e----ec--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGTR-------------------------F----DE--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~-------------------------~----~~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+..-..  +.|    .|..                         .    ..  -.|.+..++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            3556899999999998765332  345    1110                         0    01  13778888999


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|...
T Consensus        90 DtAvYYCAr~~  100 (123)
T d1mqkh_          90 DTAMYYCVRHE  100 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cccceeEEecC
Confidence            99999 66554

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.57  E-value=0.039  Score=29.83  Aligned_cols=37  Identities=5%  Similarity=0.151  Sum_probs=22.4

Q ss_pred             eEEEECCEEeee---------cC------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLY---------NR------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|+++|.++..         .+      +.|.|..-.......|+|++.+.
T Consensus        37 v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          37 VEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE   88 (101)
T ss_dssp             EEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             EEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            789999976532         11      34444332223456799999875

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.066  Score=28.93  Aligned_cols=40  Identities=18%  Similarity=0.182  Sum_probs=25.0

Q ss_pred             ecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcE--EEE--cCee
Q psy12134         52 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK--RFD--EGTR   92 (139)
Q Consensus        52 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~~--~~~~   92 (139)
                      ..+|.+.+.+.. .+..|...+|.|.+.++.|..  +.|  +|..
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~   46 (100)
T d1k5nb_           3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGER   46 (100)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEe
Confidence            345666543221 335688999999999975554  467  4544

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.24  Score=26.74  Aligned_cols=40  Identities=8%  Similarity=0.030  Sum_probs=22.7

Q ss_pred             eEEEECCEEeee---------cC------CeEEEcccCCC--CCEEEEEEEEcCCCC
Q psy12134          2 LVIFFSKIELLY---------NR------ESLDLDRVTLK--LAGLYQCIASNNIGE   41 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~------~~L~i~~v~~~--d~G~Y~C~~~n~~~~   41 (139)
                      |+|.+++.....         .+      +.|.|..-.-.  ....|+|++.+..+.
T Consensus        40 v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          40 FSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             EEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             EEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            789998865432         11      34444332211  123799999986533

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.53  E-value=0.17  Score=28.57  Aligned_cols=53  Identities=9%  Similarity=0.120  Sum_probs=34.4

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCee-------------------------e------ecceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGTR-------------------------F------DEGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~-------------------------~------~~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .+..                         .      +.-.|.+..++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            4557899999999998764332  345    1110                         0      0124778888999


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        90 DTavYYCAR~~  100 (127)
T d2fx7h1          90 DTAVYYCAREG  100 (127)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecc
Confidence            99999 66654

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.50  E-value=0.065  Score=29.34  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        69 ~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          69 ATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             EEEEETTCCGGGCSEEEEEEEE
T ss_pred             eeeeEcCccccCCceEEEEeec
Confidence            5799999999999999998763

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=91.44  E-value=0.23  Score=27.73  Aligned_cols=18  Identities=17%  Similarity=0.244  Sum_probs=14.9

Q ss_pred             eeCCCCeEEEEEEeeeCC
Q psy12134         65 HTAPDMRAEIICNVYANP   82 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p   82 (139)
                      .+.+|+++.|.|.+.+..
T Consensus        11 ~vkPg~sl~LsC~~SG~s   28 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFS   28 (120)
T ss_dssp             EECSSSCEEEEEEEESSC
T ss_pred             eECCCCCEEEEEEEcccc
Confidence            456899999999998754

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.032  Score=30.53  Aligned_cols=37  Identities=14%  Similarity=0.208  Sum_probs=22.3

Q ss_pred             eEEEECCEEeeec--------------C------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN--------------R------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~--------------~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|+++|.++...              +      +.|.|..-.......|+|++.+.
T Consensus        39 v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~   95 (108)
T d1ow0a2          39 VRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHE   95 (108)
T ss_dssp             EEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECT
T ss_pred             EEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeC
Confidence            7899999875321              1      23444322223356899999874

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.37  E-value=0.041  Score=29.80  Aligned_cols=37  Identities=8%  Similarity=0.100  Sum_probs=23.2

Q ss_pred             eEEEECCEEeee---------cC------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLY---------NR------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|+++|.+...         .+      +.|.|..-.......|+|++.+.
T Consensus        38 v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          38 TEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             EEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             EEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            789999986532         11      33455443334456799999875

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=91.31  E-value=0.078  Score=29.09  Aligned_cols=22  Identities=41%  Similarity=0.588  Sum_probs=19.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        69 ~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          69 STLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEECCC
T ss_pred             eEEEEeecccccceeEeeeEec
Confidence            5699999999999999998754

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.14  E-value=0.24  Score=27.73  Aligned_cols=51  Identities=10%  Similarity=0.018  Sum_probs=33.2

Q ss_pred             eeCCCCeEEEEEEeeeCCCcE--EEE----cCee-------------------------e-e---c--ceEEEEecCCCC
Q psy12134         65 HTAPDMRAEIICNVYANPPAK--RFD----EGTR-------------------------F-D---E--GTVTAKVLQPFS  107 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~-------------------------~-~---~--~~l~i~~~~~~d  107 (139)
                      .+.+|+++.|.|.+.+.....  +.|    .+..                         . .   .  -.|.+..++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eD   90 (121)
T d2p49b1          11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPED   90 (121)
T ss_dssp             EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccc
Confidence            456899999999998765433  345    1110                         0 0   1  136777888999


Q ss_pred             ceeE-EEEc
Q psy12134        108 ERTL-SVQD  115 (139)
Q Consensus       108 ~g~y-~~~n  115 (139)
                      .+.| .|..
T Consensus        91 tAvYYCAr~   99 (121)
T d2p49b1          91 TATYYCAAG   99 (121)
T ss_dssp             CEEEEEEES
T ss_pred             eeEEeeecc
Confidence            9999 7764

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.13  E-value=0.19  Score=27.99  Aligned_cols=21  Identities=10%  Similarity=0.031  Sum_probs=16.6

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc
Q psy12134         64 IHTAPDMRAEIICNVYANPPA   84 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~   84 (139)
                      ..+.+|+++.|.|.+.+..-.
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s   30 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFS   30 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGG
T ss_pred             ceECCCCCEEEEEEECCcccc
Confidence            455789999999999886544

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=91.12  E-value=0.045  Score=29.60  Aligned_cols=37  Identities=11%  Similarity=0.112  Sum_probs=21.9

Q ss_pred             eEEEECCEEeee---------cC------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLY---------NR------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~---------~~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|+++|.+...         .+      +.|.|..-.-.....|+|++.+.
T Consensus        38 v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~   89 (102)
T d1igtb4          38 VEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHE   89 (102)
T ss_dssp             EEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECT
T ss_pred             EEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeC
Confidence            789999876421         11      34444322222345799999874

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.10  E-value=0.21  Score=27.13  Aligned_cols=19  Identities=5%  Similarity=-0.052  Sum_probs=12.7

Q ss_pred             eEEEEecCCCCceeE-EEEc
Q psy12134         97 TVTAKVLQPFSERTL-SVQD  115 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y-~~~n  115 (139)
                      .|.+..++.+|.+.| .|..
T Consensus        67 ~L~~~sL~~eDTAvYYCAr~   86 (103)
T d1oari_          67 YMQLSSLTSEDSAVYYCARM   86 (103)
T ss_dssp             EEEECCC---CCSEEEEEEE
T ss_pred             EeeeeeccccccEEEEeEEE
Confidence            578889999999999 6653

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.05  E-value=0.31  Score=27.46  Aligned_cols=53  Identities=9%  Similarity=0.041  Sum_probs=33.5

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCee--------------------------e---ec--ceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGTR--------------------------F---DE--GTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~~--------------------------~---~~--~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .+..                          .   ..  -.|.+..++.+
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~e   88 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE   88 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcc
Confidence            3556899999999998765433  355    1110                          0   01  13778888999


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|...
T Consensus        89 DTAvYYCAr~~   99 (126)
T d1rjca1          89 DTAMYYCAADT   99 (126)
T ss_dssp             GCEEEEEEECC
T ss_pred             cCceeEEEeec
Confidence            99999 76554

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.03  E-value=0.21  Score=27.99  Aligned_cols=53  Identities=8%  Similarity=-0.028  Sum_probs=34.4

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc--EEEE----cCee--------------------------ee-----cceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPA--KRFD----EGTR--------------------------FD-----EGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~--~~~~----~~~~--------------------------~~-----~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+....  .+.|    .|..                          ..     .-.|.+..++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            355789999999999875432  2345    0100                          01     124788889999


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|...
T Consensus        90 DtAvYYCAr~~  100 (121)
T d1ol0a_          90 DTAVYYCAREP  100 (121)
T ss_dssp             GCEEEEEEECC
T ss_pred             cceEEEEEEec
Confidence            99999 76653

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=0.087  Score=28.67  Aligned_cols=38  Identities=13%  Similarity=0.144  Sum_probs=22.6

Q ss_pred             eEEEECCEEeeec-----------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN-----------R------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      |.|++||.+....           +      +.|.|..-.-.....|+|++.+..
T Consensus        39 v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          39 VQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             EEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             EEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            7899999765321           1      344443322233458999998753

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.03  Score=30.36  Aligned_cols=37  Identities=14%  Similarity=0.117  Sum_probs=21.7

Q ss_pred             eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|+++|.++...          +      +.|.+..-.......|+|++.+.
T Consensus        39 v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   91 (102)
T d1rzfl2          39 VAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE   91 (102)
T ss_dssp             EEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEET
T ss_pred             EEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            7899999875321          1      33444222222245699999874

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.94  E-value=0.26  Score=27.57  Aligned_cols=53  Identities=6%  Similarity=-0.071  Sum_probs=34.4

Q ss_pred             eEeeCCCCeEEEEEEeeeCCCc--EEEE----cCee-------------------------e-e---c--ceEEEEecCC
Q psy12134         63 WIHTAPDMRAEIICNVYANPPA--KRFD----EGTR-------------------------F-D---E--GTVTAKVLQP  105 (139)
Q Consensus        63 ~~~~~~g~~~~l~C~~~~~p~~--~~~~----~~~~-------------------------~-~---~--~~l~i~~~~~  105 (139)
                      ...+.+|+++.|.|.+.+..-.  .++|    .+..                         . .   .  -.|.|..++.
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~   88 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence            3456789999999998875432  3455    1110                         0 0   1  1377888999


Q ss_pred             CCceeE-EEEc
Q psy12134        106 FSERTL-SVQD  115 (139)
Q Consensus       106 ~d~g~y-~~~n  115 (139)
                      +|.+.| .|..
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1j05b_          89 EDTAVYYCAPF   99 (121)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeEee
Confidence            999999 6654

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=90.93  E-value=0.1  Score=29.26  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=19.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.++..+|+|.|.|....
T Consensus        80 ~~L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          80 STLTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             eeecccccccccCcEEEEeeeC
Confidence            4589999999999999998653

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=90.81  E-value=0.089  Score=27.94  Aligned_cols=37  Identities=11%  Similarity=0.153  Sum_probs=20.7

Q ss_pred             eEEEECCEEeeec-----------CCeEE---EcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN-----------RESLD---LDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~-----------~~~L~---i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|+++|..+...           ++.+.   .-.+...+...|+|++.+.
T Consensus        34 v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1hyrc1          34 LSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHS   84 (94)
T ss_dssp             EEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEET
T ss_pred             EEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEEC
Confidence            7899999876321           11111   1123334445699998764

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=0.31  Score=26.70  Aligned_cols=15  Identities=13%  Similarity=-0.099  Sum_probs=14.1

Q ss_pred             eEEEEecCCCCceeE
Q psy12134         97 TVTAKVLQPFSERTL  111 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y  111 (139)
                      .|.|.++..+|.|.|
T Consensus        78 ~L~I~~l~~~DsavY   92 (118)
T d1yjdc1          78 TFYLQNLYVNQTDIY   92 (118)
T ss_dssp             EEEEESCCGGGCEEE
T ss_pred             EEEECCCCcccCeEE
Confidence            689999999999999

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.74  E-value=0.38  Score=26.82  Aligned_cols=22  Identities=9%  Similarity=0.096  Sum_probs=17.2

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK   85 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~   85 (139)
                      ..+.+|+++.|.|.+.+.....
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~   31 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSD   31 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcC
Confidence            4567899999999998866443

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.72  E-value=0.22  Score=28.25  Aligned_cols=53  Identities=8%  Similarity=0.064  Sum_probs=34.5

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCe--e-----------------------e----ecc--eEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGT--R-----------------------F----DEG--TVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~--~-----------------------~----~~~--~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .+.  .                       .    ..+  .|.+..++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (130)
T d1rzga1          10 EVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSE   89 (130)
T ss_dssp             EEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCC
Confidence            4557899999999998765432  355    111  0                       0    011  3677788899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        90 DtA~YYCAr~~  100 (130)
T d1rzga1          90 DTAVFYCASPY  100 (130)
T ss_dssp             GCEEEEEEECC
T ss_pred             ccEEEEEEEec
Confidence            99999 77654

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=90.72  E-value=0.18  Score=27.28  Aligned_cols=34  Identities=12%  Similarity=0.205  Sum_probs=22.0

Q ss_pred             eEEEECCEEeeec---------C------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN---------R------ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~------~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|++||..+...         +      +.|.+   ..++...|+|++.+.
T Consensus        37 V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~   85 (103)
T d1hdma1          37 VNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHE   85 (103)
T ss_dssp             EEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEET
T ss_pred             EEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeC
Confidence            7899999875321         1      33433   444556799999875

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=90.66  E-value=0.12  Score=28.17  Aligned_cols=35  Identities=14%  Similarity=0.069  Sum_probs=21.6

Q ss_pred             eEEEECCEEeeec---------C------CeEEEcccCCCCCE-EEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN---------R------ESLDLDRVTLKLAG-LYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~------~~L~i~~v~~~d~G-~Y~C~~~n~~   39 (139)
                      |.|+++|..+...         +      +.|.+   ..++.| .|+|++.+..
T Consensus        43 v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v---~~~~w~~~ytC~V~H~s   93 (107)
T d1hxmb2          43 IHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTV---PEKSLDKEHRCIVRHEN   93 (107)
T ss_dssp             EEEEESSSCCCCCCEECCCEECSSSEEEEEEEEE---CTGGGGSCEEEEEEETT
T ss_pred             EEEEECCeEccCCEEccceecCCCeEEEEEEEEE---ecccCCCeEEEEEEECC
Confidence            7899998764321         1      34444   334433 6999998754

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.63  E-value=0.16  Score=28.25  Aligned_cols=52  Identities=15%  Similarity=0.095  Sum_probs=34.2

Q ss_pred             eeCCCCeEEEEEEeeeCCCcE--EEE----cCe--e-----------------------e---ec--ceEEEEecCCCCc
Q psy12134         65 HTAPDMRAEIICNVYANPPAK--RFD----EGT--R-----------------------F---DE--GTVTAKVLQPFSE  108 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~--~~~----~~~--~-----------------------~---~~--~~l~i~~~~~~d~  108 (139)
                      .+.+|+++.|.|.+.+.....  +.|    .+.  .                       .   ..  -.|.+..++.+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            456899999999998865433  345    111  0                       0   01  2467888999999


Q ss_pred             eeE-EEEcc
Q psy12134        109 RTL-SVQDK  116 (139)
Q Consensus       109 g~y-~~~n~  116 (139)
                      +.| .|...
T Consensus        91 AvYyCAr~~   99 (116)
T d1fn4b1          91 GTYYCTRDL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999 66543

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.47  E-value=0.19  Score=28.25  Aligned_cols=53  Identities=9%  Similarity=-0.019  Sum_probs=34.5

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCe--e------------------------ee-----cceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGT--R------------------------FD-----EGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~--~------------------------~~-----~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .+.  .                        ..     .-.|.+..++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~e   89 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPS   89 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccc
Confidence            4556899999999998866432  345    111  0                        00     124677888899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        90 DTA~YYCAR~~  100 (124)
T d2b1hh1          90 DTALYYCARLG  100 (124)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecC
Confidence            99999 66544

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=90.47  E-value=0.19  Score=28.04  Aligned_cols=51  Identities=10%  Similarity=0.001  Sum_probs=33.4

Q ss_pred             eeCCCCeEEEEEEeeeCCCc--EEEE----cCee------------------------e-e---c--ceEEEEecCCCCc
Q psy12134         65 HTAPDMRAEIICNVYANPPA--KRFD----EGTR------------------------F-D---E--GTVTAKVLQPFSE  108 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~--~~~~----~~~~------------------------~-~---~--~~l~i~~~~~~d~  108 (139)
                      .+.+|+++.|.|.+.+..-.  .+.|    .+..                        . .   .  -.|.+..++.+|.
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt   90 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence            45689999999999886543  3355    1110                        0 0   1  2477888889999


Q ss_pred             eeE-EEEc
Q psy12134        109 RTL-SVQD  115 (139)
Q Consensus       109 g~y-~~~n  115 (139)
                      +.| .|+.
T Consensus        91 A~YyCAr~   98 (118)
T d1lo4h1          91 AIYYCARG   98 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeccc
Confidence            999 6654

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.31  E-value=0.29  Score=27.39  Aligned_cols=53  Identities=6%  Similarity=-0.054  Sum_probs=34.4

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----cCe--e------------------------e-----ecceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----EGT--R------------------------F-----DEGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~~~--~------------------------~-----~~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+..-..  +.|    .|.  .                        .     +.-.|.+..++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            3456899999999998865433  355    110  0                        0     0124677788899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|+..
T Consensus        90 DTAvYYCAr~~  100 (122)
T d1bz7b1          90 DTAIYYCTRGG  100 (122)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEeecCC
Confidence            99999 77644

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.19  E-value=0.16  Score=26.96  Aligned_cols=25  Identities=8%  Similarity=0.044  Sum_probs=17.4

Q ss_pred             CCCeEEEEEEeeeCCC-c-EEEE--cCee
Q psy12134         68 PDMRAEIICNVYANPP-A-KRFD--EGTR   92 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~-~-~~~~--~~~~   92 (139)
                      .+..++|.|.+.++-| . .+.|  +|+.
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~   42 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQP   42 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEE
Confidence            4677899999999644 3 4577  5544

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.67  Score=24.33  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=19.7

Q ss_pred             CCCCeEEEEEEeee-CCCcEEEE--cCee
Q psy12134         67 APDMRAEIICNVYA-NPPAKRFD--EGTR   92 (139)
Q Consensus        67 ~~g~~~~l~C~~~~-~p~~~~~~--~~~~   92 (139)
                      ..++.+.|.|.+.+ .|.+.+.|  ++..
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~   42 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEE   42 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcE
Confidence            35788999999987 57777788  4444

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.13  Score=27.51  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=20.5

Q ss_pred             CCeEEEcccCCCCCEEEEEEEEcC
Q psy12134         15 RESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        15 ~~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..-++|.+++..++|.|.|.+...
T Consensus        58 k~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          58 RKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCcccCeEEEEEEEEC
Confidence            356889999999999999999743

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=89.87  E-value=0.24  Score=27.93  Aligned_cols=21  Identities=10%  Similarity=0.037  Sum_probs=16.4

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc
Q psy12134         64 IHTAPDMRAEIICNVYANPPA   84 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~   84 (139)
                      ..+.+|+++.|.|.+.+....
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~   30 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFN   30 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGG
T ss_pred             ceECCCCCeEEEEEECCcccc
Confidence            355789999999999876543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=89.85  E-value=0.46  Score=26.58  Aligned_cols=21  Identities=10%  Similarity=0.089  Sum_probs=16.4

Q ss_pred             eEEEEecCCCCceeE-EEEccc
Q psy12134         97 TVTAKVLQPFSERTL-SVQDKI  117 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y-~~~n~~  117 (139)
                      .|.|..++.+|.+.| .|+...
T Consensus        81 ~L~i~sl~~eDsAvYyCAr~~~  102 (123)
T d1r0ah1          81 FLNMMTVETADTAIYYCAQSAI  102 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEE
T ss_pred             EcceeecccccceEEeecccCC
Confidence            378888999999999 776543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=89.81  E-value=0.16  Score=28.10  Aligned_cols=20  Identities=10%  Similarity=0.170  Sum_probs=15.8

Q ss_pred             eeCCCCeEEEEEEeeeCCCc
Q psy12134         65 HTAPDMRAEIICNVYANPPA   84 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~   84 (139)
                      .+.+|+++.|.|.+.+....
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s   30 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLS   30 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGG
T ss_pred             eECCCCCEEEEEEECccCcc
Confidence            55689999999999876543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.72  E-value=0.6  Score=24.23  Aligned_cols=44  Identities=16%  Similarity=0.195  Sum_probs=25.9

Q ss_pred             CCCCeEEEEEEeeeCCCcE--EEE--cCeeeecceEEEEecCCCCceeE
Q psy12134         67 APDMRAEIICNVYANPPAK--RFD--EGTRFDEGTVTAKVLQPFSERTL  111 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~--~~~--~~~~~~~~~l~i~~~~~~d~g~y  111 (139)
                      ..+..+.|.|.+.++.|..  +.|  ++.....+... .....+..|+|
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~-~~~~~~~~gt~   60 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMEL-VETRPAGDGTF   60 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEE-CCCEECSSSCE
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEE-CcEecCCCCcE
Confidence            3467899999999976654  367  55544333222 22344455566

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.63  E-value=0.5  Score=24.77  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=21.8

Q ss_pred             cCCeEEecCceEeeCCCCeEEEEEEeeeCCCcE--EEE
Q psy12134         53 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK--RFD   88 (139)
Q Consensus        53 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~~   88 (139)
                      .+|.+.+..   ....+..+.|.|.+.++-|..  +.|
T Consensus         2 ~PP~V~v~~---~~~~~~~~tL~C~~~gFyP~~i~v~W   36 (94)
T d1t7va1           2 DPPSVVVTS---HQAPGEKKKLKCLAYDFYPGKIDVHW   36 (94)
T ss_dssp             BCCEEEEEE---EECTTSCEEEEEEEEEEBSSCEEEEE
T ss_pred             cCCEeEEec---cCCCCCCEEEEEEEEeEECCCCEEEE
Confidence            356665432   223578999999999976554  467

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=89.62  E-value=0.12  Score=28.27  Aligned_cols=19  Identities=11%  Similarity=0.134  Sum_probs=14.9

Q ss_pred             eEEEEecCCCCceeE-EEEc
Q psy12134         97 TVTAKVLQPFSERTL-SVQD  115 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y-~~~n  115 (139)
                      .|.|..++.+|.+.| .|..
T Consensus        72 ~L~i~~l~~eDtAvYyCA~~   91 (107)
T d1sjva_          72 YLEMNSLEPEDTAVYYCYTH   91 (107)
T ss_dssp             EEEECSCCGGGCSEEEEEEC
T ss_pred             EEeecCCCcccceeeeEecc
Confidence            477888899999999 6554

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=89.34  E-value=0.33  Score=27.36  Aligned_cols=52  Identities=12%  Similarity=0.130  Sum_probs=33.3

Q ss_pred             eeCCCCeEEEEEEeeeCCCcE--EEE----c--Cee-----------------------e------ecceEEEEecCCCC
Q psy12134         65 HTAPDMRAEIICNVYANPPAK--RFD----E--GTR-----------------------F------DEGTVTAKVLQPFS  107 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~~~--~~~----~--~~~-----------------------~------~~~~l~i~~~~~~d  107 (139)
                      .+.+|+++.|.|.+.+.....  +.|    .  +..                       .      +.-.|.+..++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eD   90 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecc
Confidence            456899999999998765332  344    1  100                       0      01246777888999


Q ss_pred             ceeE-EEEcc
Q psy12134        108 ERTL-SVQDK  116 (139)
Q Consensus       108 ~g~y-~~~n~  116 (139)
                      .+.| .|+..
T Consensus        91 TA~YYCAr~~  100 (127)
T d2fb4h1          91 TGVYFCARDG  100 (127)
T ss_dssp             CEEEEEEEEC
T ss_pred             eeEEEEEEec
Confidence            9999 66654

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=89.30  E-value=0.1  Score=29.04  Aligned_cols=38  Identities=13%  Similarity=0.274  Sum_probs=22.3

Q ss_pred             eEEEECCEEeeec---------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN---------R------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      +.|++++.+....         +      +.|.|..-.......|+|++.+..
T Consensus        53 v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          53 ISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             EEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             EEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            6799999875321         1      334332222223457999999753

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=89.06  E-value=0.41  Score=26.66  Aligned_cols=19  Identities=11%  Similarity=0.114  Sum_probs=15.1

Q ss_pred             eeCCCCeEEEEEEeeeCCC
Q psy12134         65 HTAPDMRAEIICNVYANPP   83 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~   83 (139)
                      .+.+|+++.|.|.+.+...
T Consensus        11 ~vkpG~sl~LsC~~SG~s~   29 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTF   29 (120)
T ss_dssp             EECTTCCEEEEEEEESSCT
T ss_pred             eECCCCCeEEEEEECCccC
Confidence            4568999999999987643

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.67  E-value=0.075  Score=28.74  Aligned_cols=38  Identities=11%  Similarity=0.218  Sum_probs=21.3

Q ss_pred             eEEEECCEEeeec---------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN---------R------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      +.|+++|.++...         +      +.|.|..-.-...-.|+|++.+..
T Consensus        37 v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          37 FSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             EEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             EEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            6799998875321         1      333332221123346999998753

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=88.58  E-value=0.65  Score=24.68  Aligned_cols=38  Identities=24%  Similarity=0.176  Sum_probs=23.5

Q ss_pred             CCeEEecCceEeeCCCCeEEEEEEeeeCCCcE--EEE--cCee
Q psy12134         54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK--RFD--EGTR   92 (139)
Q Consensus        54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~~--~~~~   92 (139)
                      +|.+.+.+.. ....+...+|.|.+.++-|..  +.|  +|..
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~   46 (99)
T d1uvqa1           5 VPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQS   46 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEE
T ss_pred             CCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEe
Confidence            4555432211 234678889999999985553  477  5554

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=88.54  E-value=0.28  Score=27.48  Aligned_cols=21  Identities=5%  Similarity=-0.092  Sum_probs=16.1

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc
Q psy12134         64 IHTAPDMRAEIICNVYANPPA   84 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~   84 (139)
                      ..+.+|+++.|.|.+.+....
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~   30 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFT   30 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCc
Confidence            355689999999999876543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=88.46  E-value=0.4  Score=26.98  Aligned_cols=25  Identities=4%  Similarity=-0.148  Sum_probs=17.9

Q ss_pred             EeeCCCCeEEEEEEeeeCCCc--EEEE
Q psy12134         64 IHTAPDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      ..+.+|+++.|.|.+.+....  .+.|
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W   36 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGW   36 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEe
Confidence            355689999999999876533  2355

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.45  E-value=0.34  Score=27.23  Aligned_cols=53  Identities=6%  Similarity=-0.129  Sum_probs=33.7

Q ss_pred             EeeCCCCeEEEEEEeeeCCCcE--EEE----c--Cee-----------------------e-e-----cceEEEEecCCC
Q psy12134         64 IHTAPDMRAEIICNVYANPPAK--RFD----E--GTR-----------------------F-D-----EGTVTAKVLQPF  106 (139)
Q Consensus        64 ~~~~~g~~~~l~C~~~~~p~~~--~~~----~--~~~-----------------------~-~-----~~~l~i~~~~~~  106 (139)
                      ..+.+|+++.|.|.+.+.....  +.|    .  +..                       . .     .-.|.+..++.+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            3556899999999998755332  345    1  110                       0 0     114677788899


Q ss_pred             CceeE-EEEcc
Q psy12134        107 SERTL-SVQDK  116 (139)
Q Consensus       107 d~g~y-~~~n~  116 (139)
                      |.+.| .|...
T Consensus        90 DTAvYYCAr~~  100 (125)
T d1op3h1          90 DTAIYYCARKG  100 (125)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceeEeEeecc
Confidence            99999 66543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.41  E-value=0.93  Score=24.03  Aligned_cols=52  Identities=6%  Similarity=0.057  Sum_probs=34.1

Q ss_pred             CCCCeEEEEEEeeeCCCcEEEE--cCeee---ecceEEEEecCC-CCceeEEEEcccCCC
Q psy12134         67 APDMRAEIICNVYANPPAKRFD--EGTRF---DEGTVTAKVLQP-FSERTLSVQDKIGPG  120 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~~~~--~~~~~---~~~~l~i~~~~~-~d~g~y~~~n~~g~~  120 (139)
                      +.|-+|.|.|+..+.  ..+.|  +...+   ....|.+..... +++|.|.|....+..
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~~L~L~~FSE~e~SGyY~C~~~~~~~   69 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNK   69 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSSCCC
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCCCCCcEEEEccccccccCcceEEecCCCCc
Confidence            359999999997754  34667  43332   234678887655 799999776543333

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.31  E-value=0.28  Score=26.24  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=15.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      +.|.|..-.......|+|++.+..
T Consensus        67 S~L~v~~~~W~~~~~ytC~V~H~s   90 (102)
T d2fbjh2          67 NQLTLPAVECPEGESVKCSVQHDS   90 (102)
T ss_dssp             EEEEECGGGSCTTCEEEEEEEETT
T ss_pred             EEEEEeHHHccCCCEEEEEEEECC
Confidence            456665444444568999998753

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=88.08  E-value=0.26  Score=27.93  Aligned_cols=50  Identities=10%  Similarity=0.052  Sum_probs=0.0

Q ss_pred             eCCCCeEEEEEEeeeCCCcEEEEcCeee---------------------------------------ecceEEEEecCCC
Q psy12134         66 TAPDMRAEIICNVYANPPAKRFDEGTRF---------------------------------------DEGTVTAKVLQPF  106 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~p~~~~~~~~~~~---------------------------------------~~~~l~i~~~~~~  106 (139)
                      +.+|+++.|.|.+.+.....+.|.|-+-                                       +.-.|.+..++.+
T Consensus        12 vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~e   91 (131)
T d3c2ah1          12 VKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKTE   91 (131)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccccC


Q ss_pred             CceeE-EEEc
Q psy12134        107 SERTL-SVQD  115 (139)
Q Consensus       107 d~g~y-~~~n  115 (139)
                      |.+.| .|+.
T Consensus        92 DTAvYYCAR~  101 (131)
T d3c2ah1          92 DTAVYSCTTD  101 (131)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEecc

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=87.39  E-value=0.45  Score=25.20  Aligned_cols=26  Identities=15%  Similarity=0.161  Sum_probs=15.1

Q ss_pred             CCCCeEEEEEEeeeCCCcE--EEE--cCee
Q psy12134         67 APDMRAEIICNVYANPPAK--RFD--EGTR   92 (139)
Q Consensus        67 ~~g~~~~l~C~~~~~p~~~--~~~--~~~~   92 (139)
                      ..++..+|.|.+.++.|..  +.|  ++..
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~   43 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQE   43 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEE
Confidence            3467778999999976653  477  5543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=87.27  E-value=0.42  Score=25.37  Aligned_cols=21  Identities=14%  Similarity=0.116  Sum_probs=13.0

Q ss_pred             CCCeEEEEEEeeeCCCcE--EEE
Q psy12134         68 PDMRAEIICNVYANPPAK--RFD   88 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~--~~~   88 (139)
                      .+...+|.|.+.+..|+.  +.|
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W   39 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRW   39 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEE
T ss_pred             cCCceEEEEEEeeeECCCcEEEE
Confidence            466778999999976553  467

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=87.19  E-value=0.33  Score=27.06  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=18.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|++.|.|....
T Consensus        80 ~~L~i~~l~~eDsAvYyCAr~~  101 (120)
T d2agjh1          80 VVLTLTNLDPVDTATYYCARTS  101 (120)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEC
T ss_pred             eeeeEEeeeeccceEEeeEecC
Confidence            4589999999999999997543

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=87.03  E-value=1.3  Score=24.84  Aligned_cols=52  Identities=10%  Similarity=0.096  Sum_probs=34.2

Q ss_pred             eeCCCCeEEEEEEeeeCCC---cEEEE----cCeee------------------------------ecceEEEEecCCCC
Q psy12134         65 HTAPDMRAEIICNVYANPP---AKRFD----EGTRF------------------------------DEGTVTAKVLQPFS  107 (139)
Q Consensus        65 ~~~~g~~~~l~C~~~~~p~---~~~~~----~~~~~------------------------------~~~~l~i~~~~~~d  107 (139)
                      .+.+|+++.|.|.+.+..-   ..+.|    .|..+                              +.-.|.+..++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            4568999999999987643   23456    11110                              01247888899999


Q ss_pred             ceeE-EEEcc
Q psy12134        108 ERTL-SVQDK  116 (139)
Q Consensus       108 ~g~y-~~~n~  116 (139)
                      .+.| .|+..
T Consensus        91 tAvYyCAr~~  100 (127)
T d3cx5j1          91 TATYYCARSE  100 (127)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEeeeec
Confidence            9999 66543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.70  E-value=0.27  Score=26.29  Aligned_cols=25  Identities=12%  Similarity=0.186  Sum_probs=17.3

Q ss_pred             CCCeEEEEEEeeeCCCc--EEEE--cCee
Q psy12134         68 PDMRAEIICNVYANPPA--KRFD--EGTR   92 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~--~~~~--~~~~   92 (139)
                      .++.+.|.|.+.+..|.  .+.|  ++..
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~   47 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSP   47 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEE
Confidence            36778999999986544  3567  5544

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=85.91  E-value=1.4  Score=24.88  Aligned_cols=19  Identities=11%  Similarity=0.218  Sum_probs=15.1

Q ss_pred             eEEEEecCCCCceeE-EEEc
Q psy12134         97 TVTAKVLQPFSERTL-SVQD  115 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y-~~~n  115 (139)
                      .|.|..++.+|.+.| .|..
T Consensus        81 ~L~i~~l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          81 VLVMTRVSPVDTATYFCAHR  100 (132)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EcccccCCcccceEEEEEEe
Confidence            378888899999999 6644

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=85.76  E-value=0.26  Score=27.34  Aligned_cols=22  Identities=32%  Similarity=0.359  Sum_probs=18.6

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|++.|.|....
T Consensus        78 ~~L~i~~L~~eDtAvYyCAr~~   99 (116)
T d7fabh1          78 FSLRLSSVTAADTAVYYCARNL   99 (116)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEC
T ss_pred             hhccccccccccceEEEeeeec
Confidence            4588999999999999997543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=0.17  Score=27.27  Aligned_cols=38  Identities=16%  Similarity=0.208  Sum_probs=21.6

Q ss_pred             eEEEECCEEeeec---------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134          2 LVIFFSKIELLYN---------R------ESLDLDRVTLKLAGLYQCIASNNI   39 (139)
Q Consensus         2 ~~W~~~~~~~~~~---------~------~~L~i~~v~~~d~G~Y~C~~~n~~   39 (139)
                      +.|.+++.++...         +      +.|.|..-.....-.|+|++.+..
T Consensus        39 ~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   91 (105)
T d1l6xa1          39 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA   91 (105)
T ss_dssp             EEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             EEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCC
Confidence            5799998775321         1      334332222223458999998753

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=85.62  E-value=0.24  Score=27.49  Aligned_cols=21  Identities=14%  Similarity=0.398  Sum_probs=17.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|++.|.|...
T Consensus        79 ~yL~m~~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          79 AYLQMNSLRAEDTAVYYCARD   99 (117)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             EEecccccCCCCceEEEEeec
Confidence            348889999999999999653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=85.58  E-value=0.25  Score=27.52  Aligned_cols=19  Identities=16%  Similarity=0.335  Sum_probs=16.7

Q ss_pred             eEEEcccCCCCCEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~   35 (139)
                      .|.|.+++.+|++.|.|.-
T Consensus        80 yL~~~~L~~eDtAvYYCAr   98 (118)
T d1nlbh1          80 YLQINSLKNEDTATYFCAR   98 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeeeecccCcceEEEEee
Confidence            4889999999999999953

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.45  E-value=0.85  Score=24.40  Aligned_cols=35  Identities=17%  Similarity=0.066  Sum_probs=21.9

Q ss_pred             CCeEEe-cCceEeeCCCCeEEEEEEeeeCCCc--EEEE
Q psy12134         54 PPEVSV-EKQWIHTAPDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        54 ~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      +|.+.+ .+....+..++.+.|.|.+.+.-|.  .+.|
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W   41 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRW   41 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEE
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEE
Confidence            455543 2222234467899999999986443  4577

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=85.24  E-value=0.15  Score=27.34  Aligned_cols=16  Identities=25%  Similarity=0.360  Sum_probs=10.7

Q ss_pred             cCCCCCEEEEEEEEcC
Q psy12134         23 VTLKLAGLYQCIASNN   38 (139)
Q Consensus        23 v~~~d~G~Y~C~~~n~   38 (139)
                      +...+...|+|.+.+.
T Consensus        71 v~~~~~~~ytC~V~H~   86 (98)
T d1u58a1          71 VDGGLEHVYSCRVKGI   86 (98)
T ss_dssp             ECTTCGGGEEEEEEEG
T ss_pred             ECCCCCCEEEEEEEeC
Confidence            3444556799999753

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=85.16  E-value=1.6  Score=24.34  Aligned_cols=19  Identities=5%  Similarity=0.032  Sum_probs=15.3

Q ss_pred             eEEEEecCCCCceeE-EEEc
Q psy12134         97 TVTAKVLQPFSERTL-SVQD  115 (139)
Q Consensus        97 ~l~i~~~~~~d~g~y-~~~n  115 (139)
                      .|.|..++.+|.+.| .|..
T Consensus        81 ~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          81 FLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EcceecccccccceEEEEEe
Confidence            478888999999999 6654

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=85.14  E-value=0.48  Score=25.24  Aligned_cols=21  Identities=14%  Similarity=0.039  Sum_probs=15.8

Q ss_pred             CCCeEEEEEEeeeCCCc--EEEE
Q psy12134         68 PDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      .+..+.|.|.+.+.-|.  .+.|
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W   40 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEW   40 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             cCCcEEEEEEEEEeECCCcEEEE
Confidence            57789999999986443  4578

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=84.83  E-value=0.42  Score=25.31  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=15.6

Q ss_pred             CCCeEEEEEEeeeCCCcE--EEE
Q psy12134         68 PDMRAEIICNVYANPPAK--RFD   88 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~--~~~   88 (139)
                      .+..++|.|.+.++-|..  +.|
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W   37 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMW   37 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEE
Confidence            456899999999976544  467

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.81  E-value=0.42  Score=25.45  Aligned_cols=21  Identities=14%  Similarity=0.061  Sum_probs=15.6

Q ss_pred             CCCeEEEEEEeeeCCCc--EEEE
Q psy12134         68 PDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      .+..+.|.|.+.+..|.  .+.|
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W   40 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEW   40 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             cCCceEEEEEEEEeECCCCEEEE
Confidence            46789999999986443  4567

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=84.70  E-value=0.28  Score=27.41  Aligned_cols=20  Identities=25%  Similarity=0.391  Sum_probs=17.6

Q ss_pred             eEEEcccCCCCCEEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      .|.|.+++.+|++.|.|...
T Consensus        80 ~L~i~~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          80 YLQLTSLTSEDTAVYYCAPF   99 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eecccccCcCcceEEEeEee
Confidence            38899999999999999754

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=84.62  E-value=0.22  Score=27.76  Aligned_cols=20  Identities=25%  Similarity=0.499  Sum_probs=17.4

Q ss_pred             eEEEcccCCCCCEEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      .|.|.+++.+|++.|.|...
T Consensus        80 ~L~i~~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          80 YLEFSRLTSDDSAVYYCAIH   99 (119)
T ss_dssp             EEEEEEECGGGCEEEEEEEC
T ss_pred             eeeecccCccceeEEEEEEe
Confidence            48899999999999999653

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=84.62  E-value=0.29  Score=27.11  Aligned_cols=19  Identities=21%  Similarity=0.523  Sum_probs=17.0

Q ss_pred             eEEEcccCCCCCEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~   35 (139)
                      .|.|.+++.+|++.|.|..
T Consensus        80 ~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          80 FMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeeeecCcCCcEEEEEec
Confidence            4889999999999999964

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.47  E-value=0.53  Score=25.03  Aligned_cols=21  Identities=10%  Similarity=-0.029  Sum_probs=15.1

Q ss_pred             CCCeEEEEEEeeeCCCc--EEEE
Q psy12134         68 PDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      ....+.|.|.+.+.-|.  .+.|
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W   39 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEW   39 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCCcEEEEEEEEEeECCCcEEEE
Confidence            45678999999986433  3567

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=84.43  E-value=0.32  Score=27.11  Aligned_cols=21  Identities=24%  Similarity=0.262  Sum_probs=17.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      -.|.|.+++.+|++.|.|...
T Consensus        80 ~~L~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          80 FFIQLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             EEEEESSCCGGGCEEEEEEEE
T ss_pred             eecceeeeeccceeEEEEEec
Confidence            348899999999999999643

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=84.36  E-value=0.32  Score=27.36  Aligned_cols=21  Identities=19%  Similarity=0.308  Sum_probs=18.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|++.|.|...
T Consensus        80 ~~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          80 VFLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             EEcceecccccccceEEEEEe
Confidence            358999999999999999753

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=84.26  E-value=0.26  Score=26.91  Aligned_cols=21  Identities=14%  Similarity=0.390  Sum_probs=18.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      -.|.|.+++.+|++.|.|...
T Consensus        71 ~~L~i~~l~~eDtAvYyCA~~   91 (107)
T d1sjva_          71 VYLEMNSLEPEDTAVYYCYTH   91 (107)
T ss_dssp             EEEEECSCCGGGCSEEEEEEC
T ss_pred             EEEeecCCCcccceeeeEecc
Confidence            358999999999999999653

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=84.23  E-value=0.49  Score=26.30  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=18.4

Q ss_pred             eEEEcccCCCCCEEEEEEEEc
Q psy12134         17 SLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .|.|.+++.+|++.|.|....
T Consensus        78 ~L~i~~L~~eDtA~YYCAr~~   98 (119)
T d1kxvc_          78 YLQMDSLKPDDTAMYYCKPSL   98 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             ecccccCCcCCcceEeeeecc
Confidence            589999999999999997653

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=84.15  E-value=0.34  Score=26.83  Aligned_cols=21  Identities=14%  Similarity=0.265  Sum_probs=18.2

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      -.|.|.+++.+|++.|.|.-.
T Consensus        78 ~~L~~~~l~~eDTAvYYCAr~   98 (116)
T d1a2yb_          78 VFLKMNSLHTDDTARYYCARE   98 (116)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             EEcceeeeeeccceEEEEEEe
Confidence            348999999999999999754

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=83.98  E-value=0.32  Score=26.61  Aligned_cols=21  Identities=19%  Similarity=0.537  Sum_probs=17.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      -.|.|.+++.+|++.|.|.-.
T Consensus        81 ~~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          81 LYLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             eEecccCCCHhHCEEEEEEEc
Confidence            348889999999999999753

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.81  E-value=0.54  Score=25.40  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=16.1

Q ss_pred             CeEEEcccCCCCCEEEEEEEEcC
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      ..|.|.+++.+|++.|.|.....
T Consensus        66 ~~L~~~sL~~eDTAvYYCAr~~~   88 (103)
T d1oari_          66 AYMQLSSLTSEDSAVYYCARMWY   88 (103)
T ss_dssp             EEEEECCC---CCSEEEEEEEEC
T ss_pred             EEeeeeeccccccEEEEeEEECC
Confidence            35889999999999999975443

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=83.78  E-value=0.33  Score=26.94  Aligned_cols=19  Identities=26%  Similarity=0.508  Sum_probs=16.9

Q ss_pred             eEEEcccCCCCCEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~   35 (139)
                      .|.|.+++.+|++.|.|..
T Consensus        80 yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          80 YLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             eecccccCCCcceEEEEee
Confidence            4889999999999999964

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=83.75  E-value=0.33  Score=27.04  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=17.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|++.|.|...
T Consensus        79 ~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          79 GYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             EEEEECSCCGGGCEEEEEEEC
T ss_pred             EEeeeeccCcccceEEEEeec
Confidence            348899999999999999654

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=83.70  E-value=0.33  Score=26.93  Aligned_cols=19  Identities=21%  Similarity=0.476  Sum_probs=16.9

Q ss_pred             eEEEcccCCCCCEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~   35 (139)
                      .|.|.+++.+|++.|.|.-
T Consensus        80 ~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          80 YMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeecccCCCcceEEEEec
Confidence            4889999999999999964

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.53  E-value=0.38  Score=26.69  Aligned_cols=21  Identities=14%  Similarity=0.349  Sum_probs=17.9

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|++.|.|...
T Consensus        78 ~~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          78 VFLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             EEEEECSCCGGGCEEEEEEEC
T ss_pred             eeccccccccCcceEEEEecc
Confidence            358999999999999999643

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=83.39  E-value=0.37  Score=27.33  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=18.3

Q ss_pred             eEEEcccCCCCCEEEEEEEEc
Q psy12134         17 SLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .|.|.+++.+|++.|.|....
T Consensus        81 ~L~i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          81 VLVMTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EcccccCCcccceEEEEEEec
Confidence            489999999999999998653

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=83.39  E-value=0.38  Score=26.95  Aligned_cols=20  Identities=25%  Similarity=0.389  Sum_probs=17.5

Q ss_pred             eEEEcccCCCCCEEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      .|.|.+++.+|++.|.|...
T Consensus        81 ~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          81 FLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EcceeecccccceEEeeccc
Confidence            48999999999999999743

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=83.29  E-value=0.35  Score=26.81  Aligned_cols=21  Identities=14%  Similarity=0.418  Sum_probs=18.4

Q ss_pred             eEEEcccCCCCCEEEEEEEEc
Q psy12134         17 SLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .|.|.+++.+|++.|.|....
T Consensus        80 ~L~i~~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          80 YMELSSLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEECS
T ss_pred             EEeecccCcCcceEEEEeEcC
Confidence            489999999999999998653

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.19  E-value=0.3  Score=26.10  Aligned_cols=27  Identities=30%  Similarity=0.427  Sum_probs=23.1

Q ss_pred             eecceEEEEecCCCCceeE--EEEcccCC
Q psy12134         93 FDEGTVTAKVLQPFSERTL--SVQDKIGP  119 (139)
Q Consensus        93 ~~~~~l~i~~~~~~d~g~y--~~~n~~g~  119 (139)
                      +.+++|.|+.+...|+|+|  ++++.-|.
T Consensus        60 ~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk   88 (101)
T d1hnfa1          60 FKNGTLKIKHLKTDDQDIYKVSIYDTKGK   88 (101)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEETTSC
T ss_pred             ccCCcEEeeeeeecCCCcEEEEEEcCCCc
Confidence            4678999999999999999  88887554

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=83.06  E-value=0.37  Score=26.79  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=18.1

Q ss_pred             eEEEcccCCCCCEEEEEEEEc
Q psy12134         17 SLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .|.|.+++.+|++.|.|....
T Consensus        80 ~L~~~sL~~eDtAvYYCAr~~  100 (118)
T d2fbjh1          80 YLQMSKVRSEDTALYYCARLH  100 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             eccccccCCCcceEEEeeEec
Confidence            488999999999999997654

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=83.05  E-value=1.1  Score=24.80  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             cCCeEEe-cCceEeeCCCCeEEEEEEeeeCCCcE--EEE
Q psy12134         53 YPPEVSV-EKQWIHTAPDMRAEIICNVYANPPAK--RFD   88 (139)
Q Consensus        53 ~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~--~~~   88 (139)
                      .+|.+.+ .+.......+..+.|.|.+.+.-|..  +.|
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W   41 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW   41 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEE
Confidence            3565553 23222333467899999999865543  467

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=83.04  E-value=0.36  Score=27.01  Aligned_cols=20  Identities=15%  Similarity=0.449  Sum_probs=17.6

Q ss_pred             eEEEcccCCCCCEEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      .|.|.+++.+|++.|.|...
T Consensus        80 ~L~i~~L~~eDtAvYYCAr~   99 (123)
T d1mqkh_          80 YLQMSSLKSEDTAMYYCVRH   99 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             ccceeeeccCcccceeEEec
Confidence            48899999999999999754

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=83.04  E-value=0.37  Score=26.88  Aligned_cols=20  Identities=35%  Similarity=0.443  Sum_probs=17.2

Q ss_pred             CeEEEcccCCCCCEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~   35 (139)
                      ..|.|.+++.+|++.|.|..
T Consensus        78 ~~L~i~~l~~eDtA~YYCAr   97 (120)
T d1dn0b1          78 FSLKLSSVTAADTAVYYCAR   97 (120)
T ss_dssp             EEEEECSCCGGGCEEEEEEE
T ss_pred             ecccccccccccccEEEEEe
Confidence            34889999999999999943

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=82.98  E-value=0.42  Score=24.82  Aligned_cols=35  Identities=11%  Similarity=0.207  Sum_probs=19.4

Q ss_pred             eEEEECCEEeeec-------CC---eEEEcccCCCCCEEEEEEEEcC
Q psy12134          2 LVIFFSKIELLYN-------RE---SLDLDRVTLKLAGLYQCIASNN   38 (139)
Q Consensus         2 ~~W~~~~~~~~~~-------~~---~L~i~~v~~~d~G~Y~C~~~n~   38 (139)
                      |.|.++|......       ++   .+.+..+  .....|+|.+.+.
T Consensus        32 v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~--~~~~~yTC~V~H~   76 (86)
T d1hxma2          32 INLVSSKKITEFDPAIVISPSGKYNAVKLGKY--EDSNSVTCSVQHD   76 (86)
T ss_dssp             EEEECSSEEEECCCEEEECTTSSEEEEEEEEE--TTTTTCEEEEEET
T ss_pred             EEEEECCEEccCcEEeeeccCCcEEEEEEEec--CCCCEEEEEEEEC
Confidence            7899998765331       11   1122222  2334689988764

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=82.98  E-value=0.37  Score=26.77  Aligned_cols=20  Identities=25%  Similarity=0.534  Sum_probs=17.1

Q ss_pred             CeEEEcccCCCCCEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~   35 (139)
                      ..|.|.+++.+|++.|.|.-
T Consensus        79 ~~L~~~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          79 AYMELARLTSEDSAIYYCAR   98 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEE
T ss_pred             EeecccccccCcceeeeEEE
Confidence            35889999999999999953

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=82.64  E-value=0.42  Score=26.61  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=18.1

Q ss_pred             eEEEcccCCCCCEEEEEEEEc
Q psy12134         17 SLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .|.|.+++.+|++.|.|....
T Consensus        80 ~L~i~~l~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          80 YIELVRLTSNDSAVYYCARED  100 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EccccccCCCcceEEEeeecC
Confidence            488999999999999998653

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=82.58  E-value=0.39  Score=26.99  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=18.0

Q ss_pred             eEEEcccCCCCCEEEEEEEEc
Q psy12134         17 SLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .|.|.+++.+|++.|.|....
T Consensus        80 yL~l~sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          80 FMYLNSLTSEDSAVYYCARES  100 (125)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             eeeeeccCcccceEEEEeeeC
Confidence            488899999999999997553

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=82.54  E-value=0.39  Score=26.66  Aligned_cols=21  Identities=14%  Similarity=0.366  Sum_probs=17.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|++.|.|.-.
T Consensus        79 ~yL~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          79 AYMQFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             EEecccccCCCcceEEEEeee
Confidence            458889999999999999654

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=82.53  E-value=0.43  Score=26.62  Aligned_cols=20  Identities=15%  Similarity=0.413  Sum_probs=17.7

Q ss_pred             eEEEcccCCCCCEEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      .|.|.+++.+|++.|.|...
T Consensus        80 ~L~i~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          80 YLQMNSLRAEDTAVYYCARE   99 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEEC
T ss_pred             EeeeeecccccceEEEEEEe
Confidence            58899999999999999654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=82.47  E-value=0.4  Score=26.45  Aligned_cols=19  Identities=26%  Similarity=0.489  Sum_probs=17.1

Q ss_pred             eEEEcccCCCCCEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~   35 (139)
                      .|.|.+++.+|++.|.|..
T Consensus        80 ~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          80 YLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             EEEECSCCGGGCEEEEEEC
T ss_pred             eeeeeeeccCcccEEEECC
Confidence            4889999999999999964

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=82.43  E-value=0.62  Score=26.16  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=18.7

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|++.|.|....
T Consensus        84 ~~L~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          84 VNLQMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             EEEEECSCCGGGCEEEEEEEES
T ss_pred             EEEeeecccccceeEEEEEEEe
Confidence            3488999999999999998653

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=82.41  E-value=0.4  Score=26.81  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=18.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      -.|.|.+++.+|++.|.|....
T Consensus        79 ~yL~m~sL~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          79 LFLQMTSLRSEDTAIYYCTRGG  100 (122)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEC
T ss_pred             eEeeeeeecccCceEEEeecCC
Confidence            3588899999999999997543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=82.32  E-value=0.41  Score=26.65  Aligned_cols=19  Identities=21%  Similarity=0.433  Sum_probs=17.0

Q ss_pred             eEEEcccCCCCCEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~   35 (139)
                      .|.|.+++.+|++.|.|..
T Consensus        80 ~L~~~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          80 YMQLNSLTSEDSAVYFCKR   98 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeeecccCCcceEEEEEE
Confidence            5889999999999999964

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=82.31  E-value=0.41  Score=26.77  Aligned_cols=20  Identities=15%  Similarity=0.358  Sum_probs=17.5

Q ss_pred             eEEEcccCCCCCEEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      .|.|.+++.+|++.|.|...
T Consensus        81 yL~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          81 YMGLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eecccccCCCcceEEEEeec
Confidence            48899999999999999764

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=82.12  E-value=0.42  Score=26.68  Aligned_cols=20  Identities=25%  Similarity=0.443  Sum_probs=17.4

Q ss_pred             eEEEcccCCCCCEEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      .|.|.+++.+|++.|.|...
T Consensus        80 yLq~~~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          80 YLQMDSLKPEDTATYYCAAG   99 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEES
T ss_pred             EEEeeeccccceeEEeeecc
Confidence            48889999999999999753

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=81.81  E-value=0.43  Score=26.86  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=18.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      -.|.|.+++.+|++.|.|.-.
T Consensus        79 ~yL~~~sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          79 AYLELNSLRPEDTAVYYCARE   99 (127)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             EeeeecccCcccceEEEEeec
Confidence            348899999999999999754

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.80  E-value=0.44  Score=26.36  Aligned_cols=20  Identities=20%  Similarity=0.413  Sum_probs=17.2

Q ss_pred             CeEEEcccCCCCCEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~   35 (139)
                      -.|.|.++..+|++.|.|.-
T Consensus        79 vyL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          79 AYMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             EEEEECSCCGGGCEEEEEEE
T ss_pred             eEecccccCCCCceEEEEcc
Confidence            35788999999999999964

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.70  E-value=0.64  Score=24.71  Aligned_cols=21  Identities=19%  Similarity=0.101  Sum_probs=15.7

Q ss_pred             CCCeEEEEEEeeeCCCc--EEEE
Q psy12134         68 PDMRAEIICNVYANPPA--KRFD   88 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~--~~~~   88 (139)
                      ....+.|.|.+.+..|.  .+.|
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W   40 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEW   40 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             cCCeEEEEEEEEEEECCCCEEEE
Confidence            35788999999887654  3577

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.69  E-value=0.44  Score=26.41  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=17.4

Q ss_pred             eEEEcccCCCCCEEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      .|.|.+++.+|++.|.|...
T Consensus        79 ~L~m~sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          79 YLELSSLTSEDSAVYYCARS   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eecccccCCCcceEEEEeec
Confidence            48899999999999999643

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=81.60  E-value=0.47  Score=25.52  Aligned_cols=23  Identities=13%  Similarity=-0.038  Sum_probs=17.4

Q ss_pred             eCCCCeEEEEEEeeeCCCcE--EEE
Q psy12134         66 TAPDMRAEIICNVYANPPAK--RFD   88 (139)
Q Consensus        66 ~~~g~~~~l~C~~~~~p~~~--~~~   88 (139)
                      +..|+..+|.|.+.++-|..  +.|
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W   39 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNW   39 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEE
Confidence            34688889999999976654  467

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.09  E-value=2.3  Score=21.92  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=17.3

Q ss_pred             CCCeEEEEEEeeeCCCc--EEEE--cCee
Q psy12134         68 PDMRAEIICNVYANPPA--KRFD--EGTR   92 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~--~~~~--~~~~   92 (139)
                      .+..+.|.|.+.++-|.  .+.|  ++..
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~   42 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLA   42 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEe
Confidence            35688999999997554  3467  4443

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=80.91  E-value=0.64  Score=26.37  Aligned_cols=21  Identities=14%  Similarity=0.309  Sum_probs=18.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|++.|.|.-.
T Consensus        79 ~yL~i~~L~~eDTAvYYCAr~   99 (135)
T d1ieha_          79 LYLQMNSLKSEDTAVYYCAKY   99 (135)
T ss_dssp             EEEEEESCCSSSCEEEEEEEB
T ss_pred             eEecEeeeCcccceeeEEEEe
Confidence            348899999999999999754

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=80.69  E-value=0.37  Score=26.73  Aligned_cols=20  Identities=15%  Similarity=0.345  Sum_probs=17.2

Q ss_pred             CeEEEcccCCCCCEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIA   35 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~   35 (139)
                      -.|.|.+++.+|++.|.|.-
T Consensus        79 ~~L~~~sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          79 LYLQMNSLRPEDTAVYYCAR   98 (117)
T ss_dssp             EEEEECSCCGGGCEEEECCE
T ss_pred             EEeeeccccCCcceEEEEcc
Confidence            35888999999999999964

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=80.69  E-value=0.5  Score=26.59  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=18.0

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|++.|.|...
T Consensus        79 ~yL~l~~l~~eDtAvYyCAr~   99 (127)
T d3cx5j1          79 FFLKLNSVTTEDTATYYCARS   99 (127)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             eecceeccccccceEEEeeee
Confidence            458899999999999999743

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=80.66  E-value=0.5  Score=26.59  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=18.5

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      ..|.|.+++.+|++.|.|....
T Consensus        79 ~yL~~~~L~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          79 LFLQMDSLRPEDTGVYFCARDG  100 (127)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEeeeeeeeecceeEEEEEEec
Confidence            4488899999999999997654

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=80.60  E-value=0.51  Score=26.27  Aligned_cols=20  Identities=20%  Similarity=0.519  Sum_probs=17.4

Q ss_pred             eEEEcccCCCCCEEEEEEEE
Q psy12134         17 SLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      .|.|.+++.+|++.|.|...
T Consensus        82 ~L~~~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          82 YLQMNTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             ccceeeccCCCceEEEeeEe
Confidence            48889999999999999754

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=80.57  E-value=0.5  Score=26.53  Aligned_cols=21  Identities=19%  Similarity=0.456  Sum_probs=18.0

Q ss_pred             eEEEcccCCCCCEEEEEEEEc
Q psy12134         17 SLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .|.|.+++.+|++.|.|....
T Consensus        79 ~L~i~~l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          79 YLQMNSLKPEDTAMYYCAADT   99 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEECC
T ss_pred             EEEEeccCcccCceeEEEeec
Confidence            388999999999999997543

>d2j88h1 b.1.1.2 (H:113-180) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.51  E-value=0.11  Score=26.01  Aligned_cols=25  Identities=12%  Similarity=0.005  Sum_probs=10.6

Q ss_pred             CCCeEEEEEEeeeCCCcE--EEEcCee
Q psy12134         68 PDMRAEIICNVYANPPAK--RFDEGTR   92 (139)
Q Consensus        68 ~g~~~~l~C~~~~~p~~~--~~~~~~~   92 (139)
                      ..+.++|.|-+.+.-|..  +.|++..
T Consensus        19 ~~~~vtl~CL~~gF~P~~i~v~W~~~~   45 (68)
T d2j88h1          19 TNSMVTLGCLVKGYFPEPVTVTWNSGS   45 (68)
T ss_dssp             --------CEEEEEBSSCCCCCSCC--
T ss_pred             CCCeEEEEEEEeceECCCcEEEECCCC
Confidence            467899999999976554  4675443

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=80.43  E-value=0.51  Score=26.42  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=18.3

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      -.|.|.+++.+|++.|.|....
T Consensus        78 ~yLq~~sL~~eDtAvYYCAr~~   99 (124)
T d1zvya1          78 AYLRMDSVKSEDTAIYTCGATR   99 (124)
T ss_dssp             EEEEECSCCGGGCEEEEEEECS
T ss_pred             eeceeccccCCcceEEEEeecc
Confidence            4478899999999999997643

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=80.29  E-value=0.52  Score=26.41  Aligned_cols=22  Identities=14%  Similarity=0.425  Sum_probs=18.4

Q ss_pred             CeEEEcccCCCCCEEEEEEEEc
Q psy12134         16 ESLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      -.|.|.+++.+|++.|.|....
T Consensus        79 ~~Lqm~sL~~eDTAvYYCAr~~  100 (125)
T d1op3h1          79 VYLQMHKMRVEDTAIYYCARKG  100 (125)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEC
T ss_pred             EeeeeeccCCccceeEeEeecc
Confidence            3478899999999999997653

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=80.19  E-value=0.59  Score=25.97  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=17.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|++.|.|...
T Consensus        79 ~~L~~~sL~~eDTAvYYCAr~   99 (119)
T d1ncwh1          79 FFLQLNSVTTEDTATYYCAGL   99 (119)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             eeccccccccCCceEEEEeEe
Confidence            348899999999999999654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=80.07  E-value=0.53  Score=26.57  Aligned_cols=21  Identities=14%  Similarity=0.325  Sum_probs=18.0

Q ss_pred             eEEEcccCCCCCEEEEEEEEc
Q psy12134         17 SLDLDRVTLKLAGLYQCIASN   37 (139)
Q Consensus        17 ~L~i~~v~~~d~G~Y~C~~~n   37 (139)
                      .|.|.+++.+|++.|.|....
T Consensus        79 ~L~~~~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          79 YMELTNLRSDDTAVYYCARDF   99 (130)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEeeccCCCCcEEEEEEeec
Confidence            488899999999999997653

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=80.02  E-value=0.54  Score=26.39  Aligned_cols=21  Identities=19%  Similarity=0.431  Sum_probs=17.8

Q ss_pred             CeEEEcccCCCCCEEEEEEEE
Q psy12134         16 ESLDLDRVTLKLAGLYQCIAS   36 (139)
Q Consensus        16 ~~L~i~~v~~~d~G~Y~C~~~   36 (139)
                      ..|.|.+++.+|++.|.|...
T Consensus        79 ~~L~~~~L~~eDtavYYCAr~   99 (126)
T d1dfbh1          79 LYLQMNSLRAEDMALYYCVKG   99 (126)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             EEeeeeeeccCcceEEEEEec
Confidence            348899999999999999654