Psyllid ID: psy12137

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLSS
Secondary Structure (PSIPRED)
cccccEEccEEEEccccHHHHcccEEEEEEEEcccccccccEEEEEEcccccccccccEEEEccccccccccccccccccccccccEEEEEEEEccccEEEEEEEccccccccccccccccEEEEEEEEcccEEEEEcccccccccccccEEEEEEEccccccccEEEEEEEEccccccccEEcEEEEcccccccHHHHHHHHHHcccccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEcccHHHHHccEEEEEEEEcccccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccEEEEEEEEccccccccccccccEEEEEEccccccccEEccccccccccEEEEEEEEcccHHHHcccEEEEEEEEcccccccEEEEEEEEEHHHcccccHHHHHHHccccccHHHHcccccccccc
Coil and Loop (DISEMBL)
rtinpefhekltfysvsetdlslQSLHILvldddkyghdflgearfplnrlrphisrDLCLNlckhypvpreeevwgeeecwQHGKIFLTLCFSTKKRALIVNLIkctnlipmdsngfsdpfiklylkpdlhkrkyktgvkwktlnpifneEFAIETKITELSKQTLVITVWdkdygksndylGCLElccnskgdrlRHWVdmmkypdhkhegihnlsikplss
Flexible Loop (DISEMBL)
rtinpefhekltfysvsetDLSLQSLHILVLDDDKYGHDFLGEArfplnrlrpHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETkitelskqtLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKypdhkhegihnlsikplss
Low Complexity Region (SEG)
RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPReeevwgeeeCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLSS
Disordered region (IsUnstruct)
********EKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD****************
Disordered Region (DISOPRED)
RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVP****************IFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN*SIK****
Disordered Region (DISEMBL)
RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLSS
Disordered Region (DISPRO)
*TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLC*****************WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
P70169	412	Double C2-like domain-con	yes	N/A	0.950	0.516	0.452	2e-50
P70610	412	Double C2-like domain-con	yes	N/A	0.950	0.516	0.452	2e-50
Q14184	412	Double C2-like domain-con	yes	N/A	0.950	0.516	0.438	9e-49
Q06846	704	Rabphilin-3A OS=Bos tauru	no	N/A	0.964	0.306	0.422	2e-48
Q9Y2J0	694	Rabphilin-3A OS=Homo sapi	no	N/A	0.964	0.311	0.422	3e-48
P47709	684	Rabphilin-3A OS=Rattus no	no	N/A	0.964	0.315	0.422	7e-48
P47708	681	Rabphilin-3A OS=Mus muscu	no	N/A	0.964	0.317	0.422	8e-48
Q14183	400	Double C2-like domain-con	no	N/A	0.959	0.537	0.389	1e-43
P70611	403	Double C2-like domain-con	no	N/A	0.968	0.538	0.379	6e-43
Q7TNF0	405	Double C2-like domain-con	no	N/A	0.968	0.535	0.379	9e-43

>sp|P70169|DOC2B_MOUSE Double C2-like domain-containing protein beta OS=Mus musculus GN=Doc2b PE=1 SV=2

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/219 (45%), Positives = 153/219 (69%), Gaps = 6/219 (2%)

Query: 2   TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
           T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++   
Sbjct: 188 TLNPSWNETLTYYGITDEDMVRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTKTFS 247

Query: 61  LNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
           + L K  PV + E+   EE     G+I ++L +S++K+ L+V +++C +L  MD+NG+SD
Sbjct: 248 ICLEKQLPVDKAEDKSLEE----RGRILISLKYSSQKQGLLVGIVRCAHLAAMDANGYSD 303

Query: 121 PFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
           P++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TVWD D GKS
Sbjct: 304 PYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDIGKS 363

Query: 180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
           ND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct: 364 NDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402

Calcium sensor which positively regulates SNARE-dependent fusion of vesicles with membranes. Binds phospholipids in a calcium-dependent manner and may act at the priming stage of fusion by modifying membrane curvature to stimulate fusion. Involved in calcium-triggered exocytosis in chromaffin cells and calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Involved both in glucose-stimulated insulin secretion in pancreatic cells and insulin-dependent GLUT4 transport to the plasma membrane in adipocytes.
Mus musculus (taxid: 10090)

>sp|P70610|DOC2B_RAT Double C2-like domain-containing protein beta OS=Rattus norvegicus GN=Doc2b PE=1 SV=2

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/219 (45%), Positives = 153/219 (69%), Gaps = 6/219 (2%)

Query: 2   TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
           T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++   
Sbjct: 188 TLNPSWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTKTFS 247

Query: 61  LNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
           + L K  PV + E+   EE     G+I ++L +S++K+ L+V +++C +L  MD+NG+SD
Sbjct: 248 ICLEKQLPVDKAEDKSLEE----RGRILISLKYSSQKQGLLVGIVRCAHLAAMDANGYSD 303

Query: 121 PFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
           P++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TVWD D GKS
Sbjct: 304 PYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDIGKS 363

Query: 180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
           ND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct: 364 NDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402

Calcium sensor which positively regulates SNARE-dependent fusion of vesicles with membranes. Binds phospholipids in a calcium-dependent manner and may act at the priming stage of fusion by modifying membrane curvature to stimulate fusion. Involved in calcium-triggered exocytosis in chromaffin cells and calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Involved both in glucose-stimulated insulin secretion in pancreatic cells and insulin-dependent GLUT4 transport to the plasma membrane in adipocytes.

Rattus norvegicus (taxid: 10116)

>sp|Q14184|DOC2B_HUMAN Double C2-like domain-containing protein beta OS=Homo sapiens GN=DOC2B PE=1 SV=1

 Score =  193 bits (490), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 96/219 (43%), Positives = 153/219 (69%), Gaps = 6/219 (2%)

Query: 2   TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
           T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++   
Sbjct: 188 TLNPTWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTKTFN 247

Query: 61  LNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
           + L K  PV + E+   EE     G+I ++L +S++K+ L+V +++C +L  MD+NG+SD
Sbjct: 248 ICLEKQLPVDKTEDKSLEE----RGRILISLKYSSQKQGLLVGIVRCAHLAAMDANGYSD 303

Query: 121 PFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
           P++K YL+PD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K++L +TVWD D GKS
Sbjct: 304 PYVKTYLRPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKSLEVTVWDYDIGKS 363

Query: 180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
           ND++G + L  ++KG+RL+HW D +K  D + E  H L+
Sbjct: 364 NDFIGGVVLGIHAKGERLKHWFDCLKNKDKRIERWHTLT 402

Calcium sensor which positively regulates SNARE-dependent fusion of vesicles with membranes. Binds phospholipids in a calcium-dependent manner and may act at the priming stage of fusion by modifying membrane curvature to stimulate fusion. Involved in calcium-triggered exocytosis in chromaffin cells and calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Involved both in glucose-stimulated insulin secretion in pancreatic cells and insulin-dependent GLUT4 transport to the plasma membrane in adipocytes.

Homo sapiens (taxid: 9606)

>sp|Q06846|RP3A_BOVIN Rabphilin-3A OS=Bos taurus GN=RPH3A PE=1 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 98/232 (42%), Positives = 154/232 (66%), Gaps = 16/232 (6%)

Query: 2   TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
           T NP ++E L ++ +++ D+  ++L I V D+DK+GH +F+GE RF L +L+P+  ++  
Sbjct: 464 TRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFN 523

Query: 61  LNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIK 106
           + L +  P+ R              EE+V    +  + GKI ++L +ST++  LIV +I+
Sbjct: 524 ICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIR 583

Query: 107 CTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQ 165
           C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF  + K ++L+K+
Sbjct: 584 CVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKK 643

Query: 166 TLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217
           +L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + +K  D K E  H L
Sbjct: 644 SLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 695

Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal.

Bos taurus (taxid: 9913)

>sp|Q9Y2J0|RP3A_HUMAN Rabphilin-3A OS=Homo sapiens GN=RPH3A PE=1 SV=1

 Score =  191 bits (486), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 98/232 (42%), Positives = 154/232 (66%), Gaps = 16/232 (6%)

Query: 2   TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
           T NP ++E L ++ +++ D+  ++L I V D+DK+GH +F+GE RF L +L+P+  ++  
Sbjct: 454 TRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFN 513

Query: 61  LNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIK 106
           + L +  P+ R              EE+V    +  + GKI ++L +ST++  LIV +I+
Sbjct: 514 ICLERVIPMKRAGTTGSARGMALYEEEQVERVGDIEERGKILVSLMYSTQQGGLIVGIIR 573

Query: 107 CTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQ 165
           C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF  + K ++L+K+
Sbjct: 574 CVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKK 633

Query: 166 TLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217
           +L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + +K  D K E  H L
Sbjct: 634 SLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 685

Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal.

Homo sapiens (taxid: 9606)

>sp|P47709|RP3A_RAT Rabphilin-3A OS=Rattus norvegicus GN=Rph3a PE=1 SV=1

 Score =  190 bits (482), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 98/232 (42%), Positives = 153/232 (65%), Gaps = 16/232 (6%)

Query: 2   TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
           T NP ++E L ++ ++E D+  ++L I V D+DK+GH +F+GE RF L +L+ +  ++  
Sbjct: 444 TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFN 503

Query: 61  LNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIK 106
           + L +  P+ R              EE+V    +  + GKI ++L +ST++  LIV +I+
Sbjct: 504 ICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIR 563

Query: 107 CTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQ 165
           C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF  + K ++L+K+
Sbjct: 564 CVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKK 623

Query: 166 TLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217
           +L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + +K  D K E  H L
Sbjct: 624 SLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 675

Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal.

Rattus norvegicus (taxid: 10116)

>sp|P47708|RP3A_MOUSE Rabphilin-3A OS=Mus musculus GN=Rph3a PE=1 SV=2

 Score =  190 bits (482), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 98/232 (42%), Positives = 153/232 (65%), Gaps = 16/232 (6%)

Query: 2   TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
           T NP ++E L ++ ++E D+  ++L I V D+DK+GH +F+GE RF L +L+ +  ++  
Sbjct: 441 TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFN 500

Query: 61  LNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIK 106
           + L +  P+ R              EE+V    +  + GKI ++L +ST++  LIV +I+
Sbjct: 501 ICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIR 560

Query: 107 CTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQ 165
           C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF  + K ++L+K+
Sbjct: 561 CVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKK 620

Query: 166 TLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217
           +L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + +K  D K E  H L
Sbjct: 621 SLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 672

Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal.

Mus musculus (taxid: 10090)

>sp|Q14183|DOC2A_HUMAN Double C2-like domain-containing protein alpha OS=Homo sapiens GN=DOC2A PE=1 SV=5

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 146/239 (61%), Gaps = 24/239 (10%)

Query: 2   TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
           T+NP ++E LT+  +++ D++ + L I V D+DK  H +F+GE R PL RL+P  S+   
Sbjct: 151 TLNPVWNEDLTYSGITDDDITHKVLRIAVCDEDKLSHNEFIGEIRVPLRRLKP--SQKKH 208

Query: 61  LNLCKHYPVPR--------------------EEEVWGEEECWQHGKIFLTLCFSTKKRAL 100
            N+C    VP                     E+   G+    + G+I L+L +S+++R L
Sbjct: 209 FNICLERQVPLASPSSMSAALRGISCYLKELEQAEQGQGLLEERGRILLSLSYSSRRRGL 268

Query: 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKI 159
           +V +++C +L  MD NG+SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF  E ++
Sbjct: 269 LVGILRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFFYEIEL 328

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
           + L+ +TL +TVWD D GKSND++G + L   ++G+  +HW D ++ PD   E  H L+
Sbjct: 329 STLATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEARKHWSDCLQQPDAALERWHTLT 387

Calcium sensor which most probably regulates fusion of vesicles with membranes. Binds calcium and phospholipids. May be involved in calcium dependent neurotransmitter release through the interaction with UNC13A. May be involved in calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Regulates Ca(2+)-dependent secretory lysosome exocytosis in mast cells.

Homo sapiens (taxid: 9606)

>sp|P70611|DOC2A_RAT Double C2-like domain-containing protein alpha OS=Rattus norvegicus GN=Doc2a PE=1 SV=1

 Score =  174 bits (440), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 144/237 (60%), Gaps = 20/237 (8%)

Query: 2   TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
           T+NP ++E+LT+  +++ D++ + L I V D+DK  H +F+GE R PL RL+P   +   
Sbjct: 154 TLNPVWNEELTYSGITDDDITHKVLRISVCDEDKLSHNEFIGEIRVPLRRLKPSQKKHFN 213

Query: 61  LNLCKHYPVPR------------------EEEVWGEEECWQHGKIFLTLCFSTKKRALIV 102
           + L +  P+P                   E+   G     + G+I L+L +S+++  L+V
Sbjct: 214 ICLERQVPLPSPSSMSAALRGISCYLKELEQAEQGPGLLEERGRILLSLSYSSRRHGLLV 273

Query: 103 NLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITE 161
            +++C +L  MD NG+SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF  E +++ 
Sbjct: 274 GIVRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFFYEMELST 333

Query: 162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
           L+ +TL +TVWD D GKSND++G + L   ++G+  +HW D +  PD   E  H L+
Sbjct: 334 LATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEAQKHWRDCLHQPDTAVERWHTLT 390

Calcium sensor which most probably regulates fusion of vesicles with membranes. Binds calcium and phospholipids. May be involved in calcium dependent neurotransmitter release through the interaction with UNC13A. May be involved in calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Regulates Ca(2+)-dependent secretory lysosome exocytosis in mast cells.

Rattus norvegicus (taxid: 10116)

>sp|Q7TNF0|DOC2A_MOUSE Double C2-like domain-containing protein alpha OS=Mus musculus GN=Doc2a PE=2 SV=1

 Score =  173 bits (438), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 144/237 (60%), Gaps = 20/237 (8%)

Query: 2   TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
           T+NP ++E+LT+  +++ D++ + L I V D+DK  H +F+GE R PL RL+P   +   
Sbjct: 156 TLNPVWNEELTYSGITDDDITHKVLRISVCDEDKLSHNEFIGEIRVPLRRLKPSQKKHFN 215

Query: 61  LNLCKHYPVPR------------------EEEVWGEEECWQHGKIFLTLCFSTKKRALIV 102
           + L +  P+P                   E+   G     + G+I L+L +S+++  L+V
Sbjct: 216 ICLERQVPLPSPSSMSAALRGISCYLKELEQAEQGPGLLEERGRILLSLSYSSRRHGLLV 275

Query: 103 NLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITE 161
            +++C +L  MD NG+SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF  E +++ 
Sbjct: 276 GIVRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFFYEIELST 335

Query: 162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
           L+ +TL +TVWD D GKSND++G + L   ++G+  +HW D +  PD   E  H L+
Sbjct: 336 LATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEAQKHWNDCLHQPDTALERWHTLT 392

Calcium sensor which most probably regulates fusion of vesicles with membranes. Binds calcium and phospholipids. May be involved in calcium dependent neurotransmitter release through the interaction with UNC13A. May be involved in calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Regulates Ca(2+)-dependent secretory lysosome exocytosis in mast cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
242009815	1048	hypothetical protein Phum_PHUM215280 [Pe	0.941	0.201	0.632	4e-76
91085005	550	PREDICTED: similar to Rabphilin CG11556-	0.973	0.396	0.540	1e-62
270009022	527	hypothetical protein TcasGA2_TC015653 [T	0.973	0.413	0.540	1e-62
340712605	795	PREDICTED: rabphilin-3A-like [Bombus ter	0.964	0.271	0.489	2e-60
350399907	795	PREDICTED: rabphilin-3A-like [Bombus imp	0.964	0.271	0.485	4e-60
332021420	811	Double C2-like domain-containing protein	0.968	0.267	0.489	3e-59
383849326	800	PREDICTED: uncharacterized protein LOC10	0.968	0.271	0.487	5e-59
380013005	792	PREDICTED: uncharacterized protein LOC10	0.964	0.272	0.481	3e-58
195130269	724	GI15164 [Drosophila mojavensis] gi|19390	0.959	0.296	0.488	2e-55
357623787	560	hypothetical protein KGM_09272 [Danaus p	0.915	0.366	0.484	2e-55

>gi|242009815|ref|XP_002425678.1| hypothetical protein Phum_PHUM215280 [Pediculus humanus corporis] gi|212509571|gb|EEB12940.1| hypothetical protein Phum_PHUM215280 [Pediculus humanus corporis]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 134/212 (63%), Positives = 171/212 (80%), Gaps = 1/212 (0%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLC 60
           +TINPEF+E + FY ++E D+  ++LHILVLDDDKYG+DFLGEAR PL R+    ++ + 
Sbjct: 628 KTINPEFNETVNFYGITEMDIQKKTLHILVLDDDKYGNDFLGEARIPLFRVGAKQTKHIT 687

Query: 61  LNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
           + L KHY V  E +VWGE+  W  GKI +TLC+STKKRALIV + +CTNL+PMD+NG SD
Sbjct: 688 VFLEKHYQVDDENKVWGEDN-WNRGKILITLCYSTKKRALIVVIGRCTNLLPMDNNGLSD 746

Query: 121 PFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSN 180
           PF+KL+L  D + +KYKT VKWK LNP+FNEEF  ETK+T+L KQTL++TVWDKDYGKSN
Sbjct: 747 PFVKLHLSSDPNHKKYKTSVKWKNLNPVFNEEFVFETKMTDLPKQTLILTVWDKDYGKSN 806

Query: 181 DYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 212
           DYLG LEL   SKG+RL+HW+D++K+PDHKHE
Sbjct: 807 DYLGGLELGWKSKGERLKHWIDVIKFPDHKHE 838

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085005|ref|XP_973334.1| PREDICTED: similar to Rabphilin CG11556-PA [Tribolium castaneum]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 164/224 (73%), Gaps = 6/224 (2%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPH--ISRD 58
           +T NPEF+E LTFY +SE+DLS ++LH+LV+DDDK+GHD++GE R  L +L+    I   
Sbjct: 322 KTRNPEFNENLTFYDISESDLSKKALHVLVVDDDKFGHDYMGETRIGLAKLKQQNTIYVA 381

Query: 59  LCLNLCKHY---PVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS 115
             L   +H    P+P  E     ++ W  G+I L+LC+STK+RAL+V + +C NL+PMD+
Sbjct: 382 ASLEEMRHEQKGPLPAPELNQWFDDLWSRGQILLSLCYSTKRRALLVMVCRCANLLPMDN 441

Query: 116 NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175
           NGFSDPF+KL L+PD   RK+KT +KWK LNP++NEEFA ET+ TEL+ Q+L ITV+DKD
Sbjct: 442 NGFSDPFVKLQLRPDPCHRKHKTSIKWKNLNPVYNEEFAFETRPTELATQSLYITVYDKD 501

Query: 176 YGKSNDY-LGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
           YGKSNDY  G +     SKG RL+ W+DM++YPDH+HE  HNL+
Sbjct: 502 YGKSNDYLGGLILGGTGSKGLRLKQWLDMIRYPDHRHEAWHNLT 545

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009022|gb|EFA05470.1| hypothetical protein TcasGA2_TC015653 [Tribolium castaneum]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 164/224 (73%), Gaps = 6/224 (2%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPH--ISRD 58
           +T NPEF+E LTFY +SE+DLS ++LH+LV+DDDK+GHD++GE R  L +L+    I   
Sbjct: 299 KTRNPEFNENLTFYDISESDLSKKALHVLVVDDDKFGHDYMGETRIGLAKLKQQNTIYVA 358

Query: 59  LCLNLCKHY---PVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS 115
             L   +H    P+P  E     ++ W  G+I L+LC+STK+RAL+V + +C NL+PMD+
Sbjct: 359 ASLEEMRHEQKGPLPAPELNQWFDDLWSRGQILLSLCYSTKRRALLVMVCRCANLLPMDN 418

Query: 116 NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175
           NGFSDPF+KL L+PD   RK+KT +KWK LNP++NEEFA ET+ TEL+ Q+L ITV+DKD
Sbjct: 419 NGFSDPFVKLQLRPDPCHRKHKTSIKWKNLNPVYNEEFAFETRPTELATQSLYITVYDKD 478

Query: 176 YGKSNDY-LGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
           YGKSNDY  G +     SKG RL+ W+DM++YPDH+HE  HNL+
Sbjct: 479 YGKSNDYLGGLILGGTGSKGLRLKQWLDMIRYPDHRHEAWHNLT 522

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712605|ref|XP_003394846.1| PREDICTED: rabphilin-3A-like [Bombus terrestris]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/245 (48%), Positives = 160/245 (65%), Gaps = 29/245 (11%)

Query: 1   RTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDL 59
           +T +PEF+E L FY  +ETD+ + ++LHIL+L DD  G DFLGEA+FPL+ L+PH ++  
Sbjct: 544 KTRDPEFNETLNFYGTTETDIWNGKALHILILQDDPAGQDFLGEAKFPLHELQPHQTKHY 603

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
            + L  HY V  EE  WG     + G+I ++L + T++RAL V + + TNL+PMDSNGFS
Sbjct: 604 NVPLQDHYTVDNEEAAWGVISSGR-GQIQVSLSYCTRRRALTVTIHRATNLLPMDSNGFS 662

Query: 120 DPFIKLYL---------------------------KPDLHKRKYKTGVKWKTLNPIFNEE 152
           DPF+KL L                           K   ++    T +KWKTLNP +NEE
Sbjct: 663 DPFVKLCLIENVTNNHRQRVFDYSIARITAKKLVSKKTTNRNAQSTTIKWKTLNPEWNEE 722

Query: 153 FAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 212
           FA  T++T+L K TL +TVWDKD+GKSNDYLG LEL CNSKG RLRHW+D++K+PDH+H 
Sbjct: 723 FAFATRLTDLMKFTLYLTVWDKDFGKSNDYLGGLELSCNSKGARLRHWIDVIKFPDHRHR 782

Query: 213 GIHNL 217
             HNL
Sbjct: 783 AWHNL 787

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399907|ref|XP_003485677.1| PREDICTED: rabphilin-3A-like [Bombus impatiens]

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 159/245 (64%), Gaps = 29/245 (11%)

Query: 1   RTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDL 59
           +T +PEF+E L FY  +ETD+ + ++LHIL+L DD  G DFLGEA+FPL+ L+PH ++  
Sbjct: 544 KTRDPEFNETLNFYGTTETDIWNGKALHILILQDDPAGQDFLGEAKFPLHELQPHQTKHY 603

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
            + L  HY V  EE  WG     + G+I ++L + T++RAL V + + TNL+PMDSNGFS
Sbjct: 604 NVPLQDHYAVDNEEAAWGVISSGR-GQIQVSLSYCTRRRALTVTIHRATNLLPMDSNGFS 662

Query: 120 DPFIKLYL---------------------------KPDLHKRKYKTGVKWKTLNPIFNEE 152
           DPF+KL L                           K   ++    T +KWKTLNP +NEE
Sbjct: 663 DPFVKLCLIENVTNNHRQRVFDYSIARITAKKLVSKKTTNRNAQSTTIKWKTLNPEWNEE 722

Query: 153 FAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 212
           F   T++T+L K TL +TVWDKD+GKSNDYLG LEL CNSKG RLRHW+D++K+PDH+H 
Sbjct: 723 FTFATRLTDLMKFTLYLTVWDKDFGKSNDYLGGLELSCNSKGARLRHWIDVIKFPDHRHR 782

Query: 213 GIHNL 217
             HNL
Sbjct: 783 AWHNL 787

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021420|gb|EGI61788.1| Double C2-like domain-containing protein beta [Acromyrmex echinatior]

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 121/247 (48%), Positives = 158/247 (63%), Gaps = 30/247 (12%)

Query: 1   RTINPEFHEKLTFYSVSETDLSL-QSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDL 59
           +T +PEF+E + FY   ETD+S  ++LHIL++ DD  G DFLGEARFPL+ L P+ ++  
Sbjct: 559 KTRDPEFNETVNFYGTMETDISTGKALHILIIQDDPSGQDFLGEARFPLHELLPYQTKHY 618

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
             +L  HYPV  EEE WG     + G+I ++L + T++RAL+V + + TNL+PMDSNGFS
Sbjct: 619 KTSLQAHYPVDNEEETWGMCSSGR-GQIQISLSYCTRRRALLVTVHRATNLLPMDSNGFS 677

Query: 120 DPFIKLYLKPD----------------------LHKRK------YKTGVKWKTLNPIFNE 151
           DPF+KL L  D                      L  RK        T +K KTLNP +NE
Sbjct: 678 DPFVKLALVEDATDNHRQQRFLDYSAARATAKKLTGRKTAGRGSQSTSIKRKTLNPEWNE 737

Query: 152 EFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH 211
           EF   T++TEL K TL +TVWDKD+GKSNDYLG L L C SKG RLRHW+D +K+PDH+H
Sbjct: 738 EFVFATRLTELMKLTLCLTVWDKDFGKSNDYLGGLMLGCGSKGARLRHWIDAIKFPDHRH 797

Query: 212 EGIHNLS 218
              HNL+
Sbjct: 798 LAWHNLA 804

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849326|ref|XP_003700296.1| PREDICTED: uncharacterized protein LOC100880366 [Megachile rotundata]

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 120/246 (48%), Positives = 161/246 (65%), Gaps = 29/246 (11%)

Query: 1   RTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDL 59
           +T +PEF+E L FY  +ETD+ + ++LHIL+L DD  G DFLGEARFPL+ L P  ++  
Sbjct: 549 QTRDPEFNETLNFYGTTETDIWNGKALHILILQDDPAGQDFLGEARFPLHELHPRQTKRY 608

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
            + L  HYPV  EE  WG     + G+I L+L + T++ AL+V + + TNL+PMDSNG S
Sbjct: 609 NVPLQNHYPVDNEEAAWGVFSSGR-GQIQLSLGYCTRRGALMVTVHRATNLLPMDSNGSS 667

Query: 120 DPFIKLYLKPDL---HKRKY------------------------KTGVKWKTLNPIFNEE 152
           DPF+KL L  ++   H+++                          T VKWKTLNP +NEE
Sbjct: 668 DPFVKLCLIENVTNNHRQRIFDYSFARITIRKLVSKKVANCNAQNTSVKWKTLNPEWNEE 727

Query: 153 FAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 212
           FA   ++T+L K TL +TVWDKD+GKSNDYLG LEL CNSKG RLRHW+D +K+PDH+H+
Sbjct: 728 FAFAARLTDLMKITLCLTVWDKDFGKSNDYLGGLELSCNSKGARLRHWIDAIKFPDHRHQ 787

Query: 213 GIHNLS 218
             HNL+
Sbjct: 788 AWHNLT 793

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013005|ref|XP_003690562.1| PREDICTED: uncharacterized protein LOC100865891 [Apis florea]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 118/245 (48%), Positives = 161/245 (65%), Gaps = 29/245 (11%)

Query: 1   RTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDL 59
           +T +PEF+E L FY  +ETD+ + ++LHIL+L DD  G DFLGEARFPL+ L+PH  +  
Sbjct: 541 KTRDPEFNETLNFYGTTETDIWNGKALHILILQDDPAGQDFLGEARFPLHELQPHQIKHY 600

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
            + L  HYPV  EE  WG     + G+I ++L + T++RALIV + +  NL+PMDSNGFS
Sbjct: 601 NVPLQDHYPVDNEEAAWGVFSSGR-GQIQVSLSYCTRRRALIVTIHRAINLLPMDSNGFS 659

Query: 120 DPFIKLYLKPDL---HKRK------------------------YKTGVKWKTLNPIFNEE 152
           DPF+KL L  ++   H+++                          T +KWKTLNP +NEE
Sbjct: 660 DPFVKLCLIENVTNNHRQRIFDYSIARITGKKLIPKKITSRNVQNTTIKWKTLNPEWNEE 719

Query: 153 FAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 212
           F    ++T+L K TL +TVWDKD+GK+NDYLG LEL  NSKG RLRHW+D++K+PDH+H+
Sbjct: 720 FTFTARLTDLMKLTLYLTVWDKDFGKNNDYLGGLELSRNSKGARLRHWIDVIKFPDHRHQ 779

Query: 213 GIHNL 217
             HNL
Sbjct: 780 AWHNL 784

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195130269|ref|XP_002009575.1| GI15164 [Drosophila mojavensis] gi|193908025|gb|EDW06892.1| GI15164 [Drosophila mojavensis]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/219 (48%), Positives = 150/219 (68%), Gaps = 4/219 (1%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLC 60
           +T NP+F+E L F  V   +L    L++ + DDDKYGHDFLG A+  L+ +       + 
Sbjct: 503 KTRNPDFNETLQFVGVEPEELGNSLLYVALFDDDKYGHDFLGAAKVCLSTVHSTSQYRIS 562

Query: 61  LNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
           + L        E E+    + W +GK+ ++LC++TK+RAL+VN+ +C NL+PMD+NG SD
Sbjct: 563 VPLGAEDQYSAEAEM---SQSWPNGKMLISLCYNTKRRALVVNVKQCINLLPMDNNGSSD 619

Query: 121 PFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
           PF+KL LKPD HK +K+KT VKW+TLNP+FNEEF  E    +L+K+ L++TVWDKD GKS
Sbjct: 620 PFVKLQLKPDAHKNKKHKTSVKWRTLNPVFNEEFYFEASPHDLNKEMLILTVWDKDLGKS 679

Query: 180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
           ND+LG L+L   SKGDRL+ W+D ++ PDH HE  H L+
Sbjct: 680 NDFLGSLQLGAQSKGDRLQQWLDCIRLPDHFHEKWHCLA 718

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623787|gb|EHJ74811.1| hypothetical protein KGM_09272 [Danaus plexippus]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/219 (48%), Positives = 150/219 (68%), Gaps = 14/219 (6%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLC 60
           +T NPE++E L F+ ++E+DLS++SL ++V DDD+YG D +G A              + 
Sbjct: 350 KTKNPEYNETLHFFGITESDLSIKSLELVVFDDDRYGCDEMGSA-------------TVA 396

Query: 61  LNLCKHYPVPREEEVWGEEECWQHG-KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
           L  C   P      + G   C   G ++ L LC+STKKRAL+V + + T+L P DSNG+S
Sbjct: 397 LRECLKTPAQLRLALSGSSGCEPIGPRLLLALCYSTKKRALVVTVCRGTDLPPQDSNGYS 456

Query: 120 DPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
           DPF+KL+L PD + +K+KT +KW+ LNP++NEEF  ET+ TELS+Q L +TVWDKDYGK 
Sbjct: 457 DPFVKLHLDPDPYHKKHKTSIKWRNLNPVWNEEFYFETRPTELSRQNLTLTVWDKDYGKP 516

Query: 180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
           ND+LG L L  +SKG RL+HW+D +K+PDH+HE  H+L+
Sbjct: 517 NDFLGSLVLGASSKGRRLKHWMDCIKFPDHRHEQWHSLT 555

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
FB|FBgn0030230	638	Rph "Rabphilin" [Drosophila me	0.959	0.336	0.470	8e-53
MGI|MGI:1100497	412	Doc2b "double C2, beta" [Mus m	0.950	0.516	0.438	5.2e-49
RGD|620519	412	Doc2b "double C2-like domains,	0.950	0.516	0.438	5.2e-49
UNIPROTKB|P70610	412	Doc2b "Double C2-like domain-c	0.950	0.516	0.438	5.2e-49
UNIPROTKB|F1N0W4	356	DOC2B "Uncharacterized protein	0.950	0.598	0.442	6.7e-49
UNIPROTKB|J9NZ38	417	DOC2B "Uncharacterized protein	0.950	0.510	0.433	4.7e-48
UNIPROTKB|E1BVF7	704	E1BVF7 "Uncharacterized protei	0.607	0.193	0.518	6.2e-48
UNIPROTKB|Q14184	412	DOC2B "Double C2-like domain-c	0.950	0.516	0.424	2e-47
UNIPROTKB|Q14183	400	DOC2A "Double C2-like domain-c	0.607	0.34	0.459	1.8e-44
UNIPROTKB|E2QUB8	401	DOC2A "Uncharacterized protein	0.607	0.339	0.452	4.7e-44

FB|FBgn0030230 Rph "Rabphilin" [Drosophila melanogaster (taxid:7227)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 103/219 (47%), Positives = 146/219 (66%)

Query:     1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLC 60
             +T NPEF+E L F  V   +L    +++ + DDDKYGHDFLG A+  L+ +       + 
Sbjct:   417 KTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYGHDFLGAAKVCLSTVHSTSQYRIS 476

Query:    61 LNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
             + L       +          W +GK+ L+LC++TK+RAL+VN+ +C NL+ MD+NG SD
Sbjct:   477 VPLGVE---DQYSNAAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSSD 533

Query:   121 PFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
             PF+K+ LKPD HK +K+KT VKW+TLNPI+NEEF  E    +L+K+ L++TVWDKD GKS
Sbjct:   534 PFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEASPHDLNKEMLILTVWDKDLGKS 593

Query:   180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
             ND+LG L+L   SKG+RL+ W+D ++ PDH HE  H L+
Sbjct:   594 NDFLGSLQLGAQSKGERLQQWLDCIRLPDHFHEKWHCLA 632

GO:0048488 "synaptic vesicle endocytosis" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=IEA;NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1100497 Doc2b "double C2, beta" [Mus musculus (taxid:10090)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 96/219 (43%), Positives = 150/219 (68%)

Query:     2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
             T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++   
Sbjct:   188 TLNPSWNETLTYYGITDEDMVRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTKTFS 247

Query:    61 LNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
             + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  MD+NG+SD
Sbjct:   248 ICLEKQLPVDKAEDKSLE----ERGRILISLKYSSQKQGLLVGIVRCAHLAAMDANGYSD 303

Query:   121 PFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
             P++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TVWD D GKS
Sbjct:   304 PYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDIGKS 363

Query:   180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
             ND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct:   364 NDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402

GO:0005215 "transporter activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0008104 "protein localization" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IPI

GO:0031201 "SNARE complex" evidence=ISO

GO:0031340 "positive regulation of vesicle fusion" evidence=ISO

GO:0032024 "positive regulation of insulin secretion" evidence=IMP

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISO

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=ISO;IMP

RGD|620519 Doc2b "double C2-like domains, beta" [Rattus norvegicus (taxid:10116)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 96/219 (43%), Positives = 150/219 (68%)

Query:     2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
             T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++   
Sbjct:   188 TLNPSWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTKTFS 247

Query:    61 LNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
             + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  MD+NG+SD
Sbjct:   248 ICLEKQLPVDKAEDKSLE----ERGRILISLKYSSQKQGLLVGIVRCAHLAAMDANGYSD 303

Query:   121 PFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
             P++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TVWD D GKS
Sbjct:   304 PYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDIGKS 363

Query:   180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
             ND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct:   364 NDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402

GO:0005215 "transporter activity" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006887 "exocytosis" evidence=IEP

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0008104 "protein localization" evidence=ISO;ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019905 "syntaxin binding" evidence=ISO

GO:0031201 "SNARE complex" evidence=IDA

GO:0031340 "positive regulation of vesicle fusion" evidence=IDA

GO:0032024 "positive regulation of insulin secretion" evidence=ISO;ISS

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=IDA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=ISO;IDA

UNIPROTKB|P70610 Doc2b "Double C2-like domain-containing protein beta" [Rattus norvegicus (taxid:10116)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 96/219 (43%), Positives = 150/219 (68%)

Query:     2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
             T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++   
Sbjct:   188 TLNPSWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTKTFS 247

Query:    61 LNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
             + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  MD+NG+SD
Sbjct:   248 ICLEKQLPVDKAEDKSLE----ERGRILISLKYSSQKQGLLVGIVRCAHLAAMDANGYSD 303

Query:   121 PFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
             P++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TVWD D GKS
Sbjct:   304 PYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDIGKS 363

Query:   180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
             ND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct:   364 NDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

UNIPROTKB|F1N0W4 DOC2B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 97/219 (44%), Positives = 150/219 (68%)

Query:     2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
             T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++   
Sbjct:   132 TLNPTWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTKTFS 191

Query:    61 LNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
             + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  MD+NG+SD
Sbjct:   192 ICLEKQLPVDKTEDKSLE----ERGRILVSLKYSSQKQGLLVGIVRCAHLAAMDANGYSD 247

Query:   121 PFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
             P++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL ITVWD D GKS
Sbjct:   248 PYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEITVWDYDIGKS 307

Query:   180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
             ND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct:   308 NDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 346

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|J9NZ38 DOC2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 95/219 (43%), Positives = 149/219 (68%)

Query:     2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
             T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+ + ++   
Sbjct:   193 TLNPTWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKANHTKTFS 252

Query:    61 LNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
             + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  MD+NG+SD
Sbjct:   253 ICLEKQLPVDKTEDKSLE----ERGRILISLKYSSQKQGLLVGIVRCAHLAAMDANGYSD 308

Query:   121 PFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
             P++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TVWD D GKS
Sbjct:   309 PYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDIGKS 368

Query:   180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
             ND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct:   369 NDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 407

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|E1BVF7 E1BVF7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 382 (139.5 bits), Expect = 6.2e-48, Sum P(2) = 6.2e-48
 Identities = 71/137 (51%), Positives = 101/137 (73%)

Query:    83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 141
             + G+I ++L +S++K+ L+V +I+C +L  MD+NG+SDP++K YLKPD  K+ K+KT VK
Sbjct:   558 ERGRILISLKYSSQKQGLLVGIIRCAHLAAMDANGYSDPYVKTYLKPDEDKKSKHKTAVK 617

Query:   142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 201
              KTLNP FNEEF  E K  +L+K+TL +TVWD D GKSND++G + L  N+KG+RL+HW 
Sbjct:   618 KKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDIGKSNDFIGGVVLGINAKGERLKHWF 677

Query:   202 DMMKYPDHKHEGIHNLS 218
             D +K  D K E  H L+
Sbjct:   678 DCLKNKDKKIERWHTLT 694

GO:0005215 "transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=IEA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IEA

UNIPROTKB|Q14184 DOC2B "Double C2-like domain-containing protein beta" [Homo sapiens (taxid:9606)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 93/219 (42%), Positives = 150/219 (68%)

Query:     2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
             T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++   
Sbjct:   188 TLNPTWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTKTFN 247

Query:    61 LNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSD 120
             + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  MD+NG+SD
Sbjct:   248 ICLEKQLPVDKTEDKSLE----ERGRILISLKYSSQKQGLLVGIVRCAHLAAMDANGYSD 303

Query:   121 PFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
             P++K YL+PD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K++L +TVWD D GKS
Sbjct:   304 PYVKTYLRPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKSLEVTVWDYDIGKS 363

Query:   180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218
             ND++G + L  ++KG+RL+HW D +K  D + E  H L+
Sbjct:   364 NDFIGGVVLGIHAKGERLKHWFDCLKNKDKRIERWHTLT 402

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0031340 "positive regulation of vesicle fusion" evidence=ISS

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISS

GO:0008104 "protein localization" evidence=ISS

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISS

GO:0032024 "positive regulation of insulin secretion" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=ISS

GO:0031201 "SNARE complex" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|Q14183 DOC2A "Double C2-like domain-containing protein alpha" [Homo sapiens (taxid:9606)]

 Score = 350 (128.3 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 63/137 (45%), Positives = 98/137 (71%)

Query:    83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 141
             + G+I L+L +S+++R L+V +++C +L  MD NG+SDP++K YL+PD+ K+ K+KT VK
Sbjct:   251 ERGRILLSLSYSSRRRGLLVGILRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVK 310

Query:   142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 201
              KTLNP FNEEF  E +++ L+ +TL +TVWD D GKSND++G + L   ++G+  +HW 
Sbjct:   311 KKTLNPEFNEEFFYEIELSTLATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEARKHWS 370

Query:   202 DMMKYPDHKHEGIHNLS 218
             D ++ PD   E  H L+
Sbjct:   371 DCLQQPDAALERWHTLT 387

GO:0005215 "transporter activity" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0017158 "regulation of calcium ion-dependent exocytosis" evidence=IMP

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

UNIPROTKB|E2QUB8 DOC2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 347 (127.2 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
 Identities = 62/137 (45%), Positives = 98/137 (71%)

Query:    83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 141
             + G+I L+L +S+++R L+V +++C +L  MD NG+SDP++K YL+PD+ K+ K+KT VK
Sbjct:   252 ERGRILLSLSYSSRRRGLLVGIVRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVK 311

Query:   142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 201
              KTLNP FNE+F  E +++ L+ +TL +TVWD D GKSND++G + L   ++G+  +HW 
Sbjct:   312 KKTLNPEFNEDFFYEMELSVLATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEARKHWS 371

Query:   202 DMMKYPDHKHEGIHNLS 218
             D ++ PD   E  H L+
Sbjct:   372 DCLQQPDAALERWHTLT 388

GO:0017158 "regulation of calcium ion-dependent exocytosis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	8e-65
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-28
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	5e-27
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	8e-27
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	6e-25
pfam00168	85	pfam00168, C2, C2 domain	7e-25
cd00030	102	cd00030, C2, C2 domain	1e-24
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	3e-23
smart00239	101	smart00239, C2, Protein kinase C conserved region	7e-23
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	3e-22
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	4e-21
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	3e-20
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	4e-20
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	9e-20
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-19
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	2e-18
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	7e-18
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	2e-17
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	6e-16
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	8e-16
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-15
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	6e-15
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	2e-14
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	3e-14
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	8e-14
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	2e-13
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	2e-13
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	2e-13
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	1e-12
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	2e-12
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	1e-11
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	9e-11
cd08408	138	cd08408, C2B_Synaptotagmin-14_16, C2 domain second	2e-10
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	5e-10
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	1e-09
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	2e-09
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-08
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	4e-08
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	9e-08
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-07
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	2e-07
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	4e-07
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	6e-07
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	8e-07
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	8e-07
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-06
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	1e-06
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	2e-06
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-06
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	5e-06
smart00239	101	smart00239, C2, Protein kinase C conserved region	6e-06
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	6e-06
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	7e-06
pfam00168	85	pfam00168, C2, C2 domain	9e-06
cd00030	102	cd00030, C2, C2 domain	2e-05
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	2e-05
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	2e-05
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	1e-04
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	2e-04
cd08374	133	cd08374, C2F_Ferlin, C2 domain sixth repeat in Fer	2e-04
cd08407	138	cd08407, C2B_Synaptotagmin-13, C2 domain second re	3e-04
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	4e-04
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	5e-04
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	8e-04
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	0.001
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	0.002
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	0.002
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	0.002
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	0.003
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	0.004
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	0.004

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score =  196 bits (501), Expect = 8e-65
 Identities = 80/133 (60%), Positives = 104/133 (78%), Gaps = 1/133 (0%)

Query: 86  KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKT 144
           KI ++L ++T++R LIV +I+C NL  MD+NG+SDPF+KLYLKPD  K+ K+KT VK KT
Sbjct: 1   KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKT 60

Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMM 204
           LNP FNEEF  + K ++L+K+TL ITVWDKD GKSNDY+G L+L  N+KG+RLRHW+D +
Sbjct: 61  LNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCL 120

Query: 205 KYPDHKHEGIHNL 217
           K PD K E  H L
Sbjct: 121 KNPDKKIEAWHTL 133

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score =  103 bits (259), Expect = 3e-28
 Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 5/122 (4%)

Query: 91  LCFSTKKR----ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTL 145
           +CFS +       L V +++  NL  MD  G SDP++K++L  +  + +K KT +K +TL
Sbjct: 4   ICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTL 63

Query: 146 NPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK 205
           NP +NE F+ E    ++ K  L++TV D D    ND +G + L CN+ G  LRHW DM+ 
Sbjct: 64  NPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLA 123

Query: 206 YP 207
            P
Sbjct: 124 SP 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score =  100 bits (251), Expect = 5e-27
 Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 1/124 (0%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G++ L+L +      L V ++K  NL P D  G SDP++K+ L     K +K KT VK  
Sbjct: 1   GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG 60

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
           TLNP+FNE F+ +    +L + +LVITV DKD    N+ +G + L  +S G+ L HW +M
Sbjct: 61  TLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEM 120

Query: 204 MKYP 207
           +  P
Sbjct: 121 LASP 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 99.8 bits (249), Expect = 8e-27
 Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 7/127 (5%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK----RKYKTGV 140
           G++ L+LC++     + VN+IK  NL  MD NG SDP++K++L   ++K     K KT +
Sbjct: 2   GELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWL---MYKDKRVEKKKTVI 58

Query: 141 KWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 200
           K +TLNP+FNE F     +  L + TL+ITV DKD    ND +G + L   S G  L+HW
Sbjct: 59  KKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHW 118

Query: 201 VDMMKYP 207
            DM+  P
Sbjct: 119 KDMLSKP 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 94.6 bits (236), Expect = 6e-25
 Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 4/103 (3%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HKRKYKTGVKWK 143
           G+I+L    S K   L V + +  NLIPMD NG SDP++KL L PD  ++ K KT    K
Sbjct: 2   GRIYLK--ISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK 59

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCL 186
           TLNP++NE F  + K  +  ++ L I VWD D    ND++G L
Sbjct: 60  TLNPVWNETFTFDLKPADKDRR-LSIEVWDWDRTTRNDFMGSL 101

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 93.1 bits (232), Expect = 7e-25
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V +I   NL P D NG SDP++K+ L     K   KT V   TLNP++NE F  E  +
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQ-KKDTKKTKVVKNTLNPVWNETFTFE--V 57

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLE 187
           T      L I V+D D    +D++G + 
Sbjct: 58  TLPELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 92.9 bits (231), Expect = 1e-24
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V +I+  NL   D NG SDP++K+ L     K+K+KT V   TLNP++NE F     +
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGG---KQKFKTKVVKNTLNPVWNETFEFP--V 55

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLEL 188
            +    TL + VWDKD    +D+LG +E+
Sbjct: 56  LDPESDTLTVEVWDKDRFSKDDFLGEVEI 84

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 90.0 bits (224), Expect = 3e-23
 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           GK+  +L +  +   L V +I+  +L  MD  G SDP++K+YL PD  K+K++T V  KT
Sbjct: 3   GKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD-KKKKFETKVHRKT 61

Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKD 175
           LNP+FNE F  +   +EL  +TLV +V+D D
Sbjct: 62  LNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 88.7 bits (220), Expect = 7e-23
 Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V +I   NL P D  G SDP++K+ L  D  K K KT V   TLNP++NE F  E  +
Sbjct: 2   LTVKIISARNLPPKDKGGKSDPYVKVSLDGD-PKEKKKTKVVKNTLNPVWNETFEFE--V 58

Query: 160 TELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHW 200
                  L I V+DKD    +D++G   + L     G R    
Sbjct: 59  PPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 87.7 bits (218), Expect = 3e-22
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD---LHKRKYKTGVK 141
           G + +   +   +++L V ++   NL+P+DSNG SDPF+K+ L P          KT VK
Sbjct: 3   GVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVK 62

Query: 142 WKTLNPIFNE--EFAIETKITELSKQTLVITVWDKDYGKSNDYLGC 185
            KTL P+F+E  EF +  +   +    L+ TV D D   SND+ G 
Sbjct: 63  KKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGE 108

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 84.9 bits (210), Expect = 4e-21
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G++  +LC+      L + +IK  NL  MD  GFSDP++K+ L  +  + +K KT VK  
Sbjct: 1   GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN 60

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
           TLNP +NE    +     +   +L+I V D D    N+ +G   +  N+ G    HW +M
Sbjct: 61  TLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEM 120

Query: 204 MKYP 207
           +  P
Sbjct: 121 LANP 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 82.3 bits (204), Expect = 3e-20
 Identities = 38/88 (43%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 143
           G+I LT+ +S++++ LIV + KC NL P DS+   DP+++LYL PD  K  + KT VK  
Sbjct: 3   GRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD 62

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITV 171
            LNP+F+E F     + EL ++TL + V
Sbjct: 63  NLNPVFDETFEFPVSLEELKRRTLDVAV 90

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 81.8 bits (203), Expect = 4e-20
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V++I   NL   D NG SDPF+K YL     ++ +KT    KTLNP++NE F +   +
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLN---GEKVFKTKTIKKTLNPVWNESFEVP--V 55

Query: 160 TELSKQTLVITVWDKDYGKSNDYLG 184
               +  L + V+D D G  +D LG
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLG 80

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 81.2 bits (201), Expect = 9e-20
 Identities = 28/58 (48%), Positives = 46/58 (79%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRD 58
           +T NPEF+E LT+Y ++E D+  ++L +LVLD+D++G+DFLGE R PL +L+P+ ++ 
Sbjct: 61  KTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQ 118

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 80.4 bits (199), Expect = 1e-19
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G +  TL +     AL   +I+   L  MD+NG SDP++KL L P   K  K +T    K
Sbjct: 2   GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK 61

Query: 144 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKD-YGKSNDYLG 184
           T NP FNE          ++ ++TL + V D+D +G  ND+LG
Sbjct: 62  TRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFG--NDFLG 102

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKR-KYKTGVKW 142
           G +   L +  K R L V++I+C +L   D     SDP++K YL PD   R K KT VK 
Sbjct: 2   GSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK 61

Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
           KTLNP+FNE    + +  EL  + L ++VW +D    N +LG +E+
Sbjct: 62  KTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEV 107

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 76.7 bits (189), Expect = 7e-18
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR----KYKTGV 140
           G++ L+LC+      L V ++K  +L  MD +G +DP++K+ L    + +    K KT V
Sbjct: 2   GELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNL---YYGKKRISKKKTHV 58

Query: 141 KWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 200
           K  TLNP+FNE F  +    EL   ++   V D D    N+ +G L L   + G    HW
Sbjct: 59  KKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHW 118

Query: 201 VDMMKYPDHKHEGIHNLS 218
            ++   P  +    H L 
Sbjct: 119 KEVCNPPRRQIAEWHMLC 136

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 74.6 bits (184), Expect = 2e-17
 Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 2/106 (1%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKR-KYKTGVKW 142
           G+I  +L ++ K  +L V++ +C NL   D     S+P++K+YL PD  K+ K KT VK 
Sbjct: 1   GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK 60

Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
            T NP+FNE        ++L  +TL ++VW  D    N +LG +E+
Sbjct: 61  NTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEI 106

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 71.2 bits (175), Expect = 6e-16
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           G+I  ++ +  ++  L + ++K   L   D +G SDPF+K+YL PD  K K +T VK K 
Sbjct: 3   GRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 61

Query: 145 LNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
           LNP +NE F  E     +L ++ L + V D D    ND +G + L
Sbjct: 62  LNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 70.7 bits (174), Expect = 8e-16
 Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 6/105 (5%)

Query: 84  HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL---HKRKYKTGV 140
            G+I + L +      LIV +++  +L P D     +P++K+YL PD     KR+ KT V
Sbjct: 2   TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKT-V 60

Query: 141 KWKTLNPIFNEEFAI-ETKITELSKQTLVITVWDKDYGKSNDYLG 184
           K KTLNP +N+ F     +   L ++TL +TVWD D    ND+LG
Sbjct: 61  K-KTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLG 104

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 8/86 (9%)

Query: 101 IVN--LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETK 158
           +V   L++  NL PMD NG SDP++K  L       KYK+ V  KTLNP + E+F  +  
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG----NEKYKSKVCSKTLNPQWLEQF--DLH 54

Query: 159 ITELSKQTLVITVWDKDYGKSNDYLG 184
           + +   Q L I VWDKD GK ++++G
Sbjct: 55  LFDDQSQILEIEVWDKDTGKKDEFIG 80

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 69.3 bits (170), Expect = 6e-15
 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 15/117 (12%)

Query: 107 CTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIE-TKITELSK 164
             NL  + S G SD F+K YL PD  K+ K KT V  K++NP++N  F  +     +LS+
Sbjct: 36  AKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQ 95

Query: 165 QTLVITVWDKDYGKSNDYLGCLELCC-------------NSKGDRLRHWVDMMKYPD 208
             L +TVWD D   SND+LG + L               +S G+ +  W  M+  P+
Sbjct: 96  ACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPN 152

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G+I L+L +      L V ++K  NL+  +    +DPF+K+YL  D  K  K KT VK  
Sbjct: 2   GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD 61

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
             NPIFNE          L   +L +TV +         +G + +   + G  L HW  M
Sbjct: 62  DTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQM 121

Query: 204 M 204
           +
Sbjct: 122 L 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 66.1 bits (162), Expect = 3e-14
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 90  TLCFSTKKRA----LIVNLIKCTNLIP-MDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
            L FS +       L V+LIK  NL P        DPF+K+ L PD  +R  ++ VK KT
Sbjct: 2   RLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD-ERRSLQSKVKRKT 60

Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKD 175
            NP F+E F  +    EL ++TL ++V+D D
Sbjct: 61  QNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 69.8 bits (171), Expect = 8e-14
 Identities = 42/93 (45%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 100  LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
            L + L    NL   D NG+SDPF+KL+L     K  YKT V  KTLNP++NEEF IE  +
Sbjct: 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLN---EKSVYKTKVVKKTLNPVWNEEFTIE--V 1096

Query: 160  TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192
                K  L I V D D G+ ND LG  E+  + 
Sbjct: 1097 LNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129

Length = 1227

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 10/122 (8%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G++ L++  S K   L V ++   NL  +D +   DP++K YL PD  K  K KT V  K
Sbjct: 2   GQVKLSI--SYKNGTLFVMVMHAKNLPLLDGSD-PDPYVKTYLLPDPQKTTKRKTKVVRK 58

Query: 144 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHW 200
           T NP FNE    +   + +L ++ L ++VW  D    N++LG  C+ L    K D  +  
Sbjct: 59  TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPL---KKLDLSQET 115

Query: 201 VD 202
             
Sbjct: 116 EK 117

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 64.5 bits (157), Expect = 2e-13
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYK-TGVKWK 143
           G++ L+L +      L V++I+   L+  D +  SDPF+K+ L   L   K K T     
Sbjct: 1   GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG 60

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVD 202
           T++P +NE F+ +    EL   +LV TV+  +   SND++G + +   S G     HW  
Sbjct: 61  TIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRR 120

Query: 203 MM 204
           M+
Sbjct: 121 ML 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWK 143
           G +F +L ++++K+AL+VN+I+C +L  MD  +G SDP++KL L P+  + K KT V  K
Sbjct: 3   GTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE-KEHKVKTRVLRK 61

Query: 144 TLNPIFNEEFA 154
           T NP+++E F 
Sbjct: 62  TRNPVYDETFT 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           G++  +L +      L V LI+  NL P D +G +DP+ K+ L PD    K ++ +  KT
Sbjct: 3   GELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTK-QSKIHKKT 61

Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
           LNP F+E F  E    EL K+TL + ++D D    ++ +G +EL
Sbjct: 62  LNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVEL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 2/110 (1%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 142
           G+I  +L +  K ++L V++ +C NL   D +   S+P++K YL PD  ++ K KT +K 
Sbjct: 2   GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR 61

Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192
            T NP++NE        ++L  +TL ++VW  D    N +LG +E+  +S
Sbjct: 62  NTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDS 111

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 31/118 (26%)

Query: 96  KKRALIVNLIKCTNLIPMDSNGFSDPFIKL-------------YLKPDLHKRK------- 135
               L V +I+   L+  D NGFSDP+  L               K   H++K       
Sbjct: 26  PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTV 85

Query: 136 -----YKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
                  T VK +TLNP++NE F  E  + ++S   L + +WD D    +D+LGC+ +
Sbjct: 86  PAKSIKVTEVKPQTLNPVWNETFRFE--VEDVSNDQLHLDIWDHD----DDFLGCVNI 137

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 56.9 bits (138), Expect = 9e-11
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L ++L +  NL   D  G SDP++K        K  YK+   +K LNP+++E+F +    
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKFKYG---GKTVYKSKTIYKNLNPVWDEKFTL---P 55

Query: 160 TELSKQTLVITVWDKDYGKSNDYLG 184
            E   Q L I V+D D G ++D++G
Sbjct: 56  IEDVTQPLYIKVFDYDRGLTDDFMG 80

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 87  IFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKT 144
           + L L ++     L V +IK +N   +  N   D ++KL L     +   K KT ++   
Sbjct: 4   LLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQ 63

Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDM 203
            +P F E F  +  + +LS+ TL+ +V++K   K  + +G   L  NS G +   HW +M
Sbjct: 64  PDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEM 123

Query: 204 MKYPDH 209
            +    
Sbjct: 124 KESKGQ 129

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 13/93 (13%)

Query: 102 VNLIKCTNLIPMDSN------GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI 155
           +++I+  +L+  D        G SDP++ + +      + +K+ V  + LNP +NE +  
Sbjct: 5   IHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA----QTFKSKVIKENLNPKWNEVY-- 58

Query: 156 ETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
           E  + E+  Q L I ++D+D  K  D+LG L +
Sbjct: 59  EAVVDEVPGQELEIELFDEDPDKD-DFLGRLSI 90

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 105 IKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY---KTGVKWKTLNPIFNEEFAIETKITE 161
           ++  NL P D NG SDP    YLK  L K+K       +   TLNP+F + F +E  +  
Sbjct: 7   VRARNLQPKDPNGKSDP----YLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPG 61

Query: 162 LSKQTLVITVWDKDYGKSNDYLG 184
            S   L I+V D D   S+D +G
Sbjct: 62  NS--ILKISVMDYDLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 105 IKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTG---VKWKTLNPIFNEEFAIETKITE 161
           I C NL+  D    SDPF+ +Y+K     +  + G   V    LNP F   F ++    E
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 162 LSKQTLVITVWDKD----YGKSNDYLGCLE 187
              Q L   V+D D        +D+LG  E
Sbjct: 67  --VQKLRFEVYDVDSKSKDLSDHDFLGEAE 94

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA----- 154
           L V +++C +L  + SNG  DPF ++ L         +T VK KT NP F+E F      
Sbjct: 1   LSVRVLECRDL-ALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 155 ---IETKIT-----ELSKQTLVITVWDKDYGKSNDYLG 184
               E K       +L K  L + +W       +D+LG
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLG 97

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 28/85 (32%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L+V +++  +L P +SNG SDP+ ++     +  +++KT V   TLNP +N   +++  +
Sbjct: 17  LMVVIVEGRDLKPCNSNGKSDPYCEV----SMGSQEHKTKVVSDTLNPKWN--SSMQFFV 70

Query: 160 TELSKQTLVITVWDKDYGKSNDYLG 184
            +L +  L ITV+D+D+   +D+LG
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLG 95

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 49.1 bits (118), Expect = 9e-08
 Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 11/83 (13%)

Query: 109 NLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNE-----EFAIETKITELS 163
           +L+  D +G SDPF ++     L++ + +T V  +TL+P +++     E  +     E++
Sbjct: 12  DLLAADKSGLSDPFARVSF---LNQSQ-ETEVIKETLSPTWDQTLIFDEVELYGSPEEIA 67

Query: 164 KQ--TLVITVWDKDYGKSNDYLG 184
           +    +V+ ++D+D    +++LG
Sbjct: 68  QNPPLVVVELFDQDSVGKDEFLG 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 99  ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETK 158
            L V +I+ + L   D  G SDPF  L    +L   + +T   +KTLNP +N+ F    K
Sbjct: 2   FLQVKVIRASGLAAADIGGKSDPFCVL----ELVNARLQTHTIYKTLNPEWNKIFTFPIK 57

Query: 159 -ITELSKQTLVITVWDKDYGKSNDYLGCL 186
            I       L +TV+D+D  K  ++LG +
Sbjct: 58  DIH----DVLEVTVYDEDKDKKPEFLGKV 82

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 102 VNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFN-EEFAIETKI 159
           V ++   +L  MD S+  +D F+++          YKT V  K+LNP++N E F  E   
Sbjct: 3   VRVVAARDLPVMDRSSDLTDAFVEVKFG----STTYKTDVVKKSLNPVWNSEWFRFEVDD 58

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192
            EL  + L I V D D   +ND +G + +  N 
Sbjct: 59  EELQDEPLQIRVMDHDTYSANDAIGKVYIDLNP 91

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 109 NLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLV 168
           NL    SNG SDP++ L +  +  +R  KT   + TLNP ++EEF +E    E     + 
Sbjct: 12  NLKADSSNGLSDPYVTL-VDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE--PLWIS 68

Query: 169 ITVWDKDYGKSNDYLG 184
            TVWD+ +   +D  G
Sbjct: 69  ATVWDRSFVGKHDLCG 84

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 99  ALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 156
            L V++++  +L   D    G SDP+  L +      +++KT     TLNP +N  +  E
Sbjct: 2   VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG----AQRFKTQTIPNTLNPKWN--YWCE 55

Query: 157 TKITELSKQTLVITVWDKDYGKSNDYLG--CLELC 189
             I     Q L + +WDKD     DYLG   + L 
Sbjct: 56  FPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALE 90

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 2/102 (1%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS-DPFIKLYLKPD-LHKRKYKTGVKW 142
           G+I   L ++ +   L + +  C NL   D       P++K+ L PD  H  K KT VK 
Sbjct: 2   GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK 61

Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG 184
            T+NP+FNE      +   LS + L ++VW     K   +LG
Sbjct: 62  GTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLG 103

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 100 LIVNLIKCTNLIP---MDSNGFS-DPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI 155
           + + +   T+L P   M   GF  DPF+ +       +R ++T  +  TLNP+FNE  A 
Sbjct: 3   VFMEIKSITDLPPLKNMTRTGFDMDPFVII----SFGRRVFRTSWRRHTLNPVFNERLAF 58

Query: 156 ETKITELSKQTLVITVWDKDYGKSNDYLG 184
           E    E +   +   V DKD    NDY+ 
Sbjct: 59  EVYPHEKNFD-IQFKVLDKDKFSFNDYVA 86

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 97  KRALIVNLIKCTNLIPMDSNGFS--DPFIKLYLK--PDLHKRKYKTG-VKWKTLNPIFNE 151
              L + +I    L     +  S  DP++++ +   P     K+KT  VK    NP++NE
Sbjct: 1   PLTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNE 60

Query: 152 EFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCC 190
            F  +  + EL+   L   V+D+D G  +D+LG  CL L  
Sbjct: 61  TFEFDVTVPELA--FLRFVVYDEDSGD-DDFLGQACLPLDS 98

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK--PDLHKRKYKTGVKW 142
           G I ++L ++     L V +++   L  +D    +  ++K+ L     + K K KT V  
Sbjct: 2   GDIQISLTYNPTLNRLTVVVLRARGLRQLDHAH-TSVYVKVSLMIHNKVVKTK-KTEVVD 59

Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL--CCNSKGDRLRHW 200
              +P FNE F+ +    +L   +L ++V      + +  LG + L     ++G  L HW
Sbjct: 60  GAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHW 119

Query: 201 VDMMKYP 207
            DM+  P
Sbjct: 120 NDMLSKP 126

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 4   NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRP 53
           NP ++E   F  V+  +L+   L  +V D+D    DFLG+A  PL+ LR 
Sbjct: 55  NPVWNETFEF-DVTVPELAF--LRFVVYDEDSGDDDFLGQACLPLDSLRQ 101

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 109 NLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLV 168
           +L P D NG SDPF++++       +  +T V  K+  P +NE F  E ++ E +   L 
Sbjct: 11  DLAPKDRNGTSDPFVRVFYN----GQTLETSVVKKSCYPRWNEVF--EFELMEGADSPLS 64

Query: 169 ITVWDKDYGKSNDYLG 184
           + VWD D    ND+LG
Sbjct: 65  VEVWDWDLVSKNDFLG 80

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 8/85 (9%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V +++ TNL   D    SDP++ L L      +K KT V  K LNP++NEE  +   +
Sbjct: 4   LKVRVVRGTNLAVRDFTS-SDPYVVLTLG----NQKVKTRVIKKNLNPVWNEELTL--SV 56

Query: 160 TELSKQTLVITVWDKDYGKSNDYLG 184
                  L + V+DKD    +D +G
Sbjct: 57  PNPMAP-LKLEVFDKDTFSKDDSMG 80

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
            T+NP ++E   F         L  L I V D D++G  DF+G+   PL+ L      + 
Sbjct: 44  NTLNPVWNETFEFE---VPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEK 100

Query: 60  C 60
            
Sbjct: 101 L 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNE--EFAIET 157
           L+V ++   +L+P D  G S  +++L    D   +K +T  K K LNP++NE   F + +
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVEL----DFDGQKKRTRTKPKDLNPVWNEKLVFNV-S 56

Query: 158 KITELSKQTLVITVW-DKDYGKSNDYLG 184
             + LS   L + V+ D+  G+   +LG
Sbjct: 57  DPSRLSNLVLEVYVYNDRRSGRRRSFLG 84

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 100 LIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETK 158
           L+V + + T+L   D     SDP++         K  Y T +  K LNP++ E + +   
Sbjct: 3   LVVTIHRATDLPKADFGTGSSDPYVTASFAKF-GKPLYSTRIIRKDLNPVWEETWFVLVT 61

Query: 159 ITEL-SKQTLVITVWDKDYGKSNDYLGCLEL 188
             E+ + + L   +WD D   ++D LG +E+
Sbjct: 62  PDEVKAGERLSCRLWDSDRFTADDRLGRVEI 92

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 1  RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEAR 45
           T+NP ++E  TF         L  L I V D D++G  DF+GE  
Sbjct: 43 NTLNPVWNETFTFEVTLP---ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 1  RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 53
           T+NP ++E   F      D    +L + V D D++   DFLGE   PL+ L  
Sbjct: 41 NTLNPVWNETFEF---PVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLD 91

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDL 59
            T NP F+E L  Y +S++ L  ++L + V   D++G   FLGE   PL+       +  
Sbjct: 61  NTTNPVFNETLK-YHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSE 119

Query: 60  CLNL 63
              L
Sbjct: 120 WYPL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISRDL 59
           +T NP + E  TFY +    L   SLH  VL  D+Y  D  +GE   PL         +L
Sbjct: 61  KTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGEL 120

Query: 60  CLNLC 64
            ++  
Sbjct: 121 LVSRE 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 2   TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLN 49
           T NP ++E L  YS+S + L  ++L + V   D++G + FLGE   PL+
Sbjct: 63  TTNPVYNETLK-YSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLD 110

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYL-KPDLHKR--KYKTGVKWKTLNPIFNEEFAIE 156
           L V ++   +L   D  G SDP++K+ L  PD +      +T    KTLNP +NEEF   
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61

Query: 157 TKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
                  +  L+  V+D++    +D+LG +E+
Sbjct: 62  VNP---REHRLLFEVFDENRLTRDDFLGQVEV 90

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176020 cd08374, C2F_Ferlin, C2 domain sixth repeat in Ferlin

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 28/110 (25%)

Query: 106 KCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTLN--PIFNEEF------ 153
              +++  D+N      SD ++K +L   L + K KT V +++L+    FN  F      
Sbjct: 8   NTRDVLNDDTNITGEKMSDIYVKGWLDG-LEEDKQKTDVHYRSLDGEGNFNWRFVFPFDY 66

Query: 154 -AIETKITELSKQT--------------LVITVWDKDYGKSNDYLGCLEL 188
              E KI  + K+               L + VWD D    +D+LG LEL
Sbjct: 67  LPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLEL 116

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the sixth C2 repeat, C2E, and has a type-II topology. Length = 133

>gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 84  HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF--SDPFIKLYLKPDLHKRKYKTGVK 141
            G++ L++ +      L+V +IK  NL           D  +K+ LK    K K K   +
Sbjct: 1   TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKR 60

Query: 142 WK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 200
            K  +NP++NE    E     L+  ++ + V ++D    +  LG   L  ++ G   +HW
Sbjct: 61  AKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHW 120

Query: 201 VDMMKYP 207
            +M+  P
Sbjct: 121 EEMLDNP 127

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 105 IKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK--YKTGVKWKTLNPIFNEEFAIETKITEL 162
                L   D  G SDPF+++  + +       Y+T V   TLNP++         + +L
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FTIPLQKL 63

Query: 163 SK----QTLVITVWDKDYGKSNDYLG 184
                 + + I V+D D    +D +G
Sbjct: 64  CNGDYDRPIKIEVYDYDSSGKHDLIG 89

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 2  TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-GHDFLGEARFPLNRL 51
          T+NP F+E+L F  V   + +   +   VLD DK+  +D++      +  L
Sbjct: 47 TLNPVFNERLAF-EVYPHEKNF-DIQFKVLDKDKFSFNDYVATGSLSVQEL 95

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 18/96 (18%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           + + ++    LI  D  G SDP    Y+   + K K +T    + LNP++NE+F  E   
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDP----YVTVQVGKTKKRTKTIPQNLNPVWNEKFHFE--- 55

Query: 160 TELSKQTLVITVWDKDYG-----------KSNDYLG 184
              S   + + VWD+D             +S+D+LG
Sbjct: 56  CHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLG 91

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 9/111 (8%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK 143
           G++ L++      R L +++++   L   +S    + ++K+ L PD   + + KT     
Sbjct: 1   GQLKLSIEGQN--RKLTLHVLEAKGLRSTNSGT-CNSYVKISLSPDKEVRFRQKTSTVPD 57

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG 194
           + NP+F+E F+ +    +  K+ LV TVW+    K +       L C S G
Sbjct: 58  SANPLFHETFSFDVNERDYQKRLLV-TVWN----KLSKSRDSGLLGCMSFG 103

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 49
           +T+NP F+E  TF  V  ++L  ++L   V D D++  HD +GE R PL 
Sbjct: 60  KTLNPVFNETFTF-KVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLL 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPL 48
           +T+NPEF E   F  V   +L  ++L +L+ D D++   + +G    PL
Sbjct: 60  KTLNPEFDESFVF-EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V ++K   L        +DP +++ L       K  T    +T NP +N+ FA     
Sbjct: 2   LYVRVVKARGL----PANSNDPVVEVKLGN----YKGSTKAIERTSNPEWNQVFAFSK-- 51

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCL 186
             L   TL ++VWDKD  K +D+LG +
Sbjct: 52  DRLQGSTLEVSVWDKDKAK-DDFLGGV 77

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 16/99 (16%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLK-PDLHKRKYKTGVKWKTLNPIFNEEFA---- 154
           L V +I+C++L     NG  DP+  + L   +  +   +T VK KT NP F+E F     
Sbjct: 2   LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59

Query: 155 ----IETKITE-----LSKQTLVITVWDKDYGKSNDYLG 184
                E K  E       K  L + +W    G  + +LG
Sbjct: 60  IDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG 98

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLG 42
           +T+NPEF+E+  FY +  +DL+ ++L I V D D     D++G
Sbjct: 59  KTLNPEFNEEF-FYDIKHSDLAKKTLEITVWDKDIGKSNDYIG 100

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           G + +   +    R L V +I+  ++   D  G S   + L L P   +R  KT V+ + 
Sbjct: 3   GDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQR-AKTKVQ-RG 60

Query: 145 LNPIFNEEF 153
            NP+FNE F
Sbjct: 61  PNPVFNETF 69

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG1028|consensus	421		100.0
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	100.0
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	100.0
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	100.0
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	100.0
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.98
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.97
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.97
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.97
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.97
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.97
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.97
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.97
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.96
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.95
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.94
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.94
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.94
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.94
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.94
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.93
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.93
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.93
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.92
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.92
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.91
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.91
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.91
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.91
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.9
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.9
KOG1013|consensus	362		99.9
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.88
KOG0696|consensus	683		99.88
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.87
KOG2059|consensus	800		99.87
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.86
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.86
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.85
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.85
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.85
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.84
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.84
KOG1028|consensus	421		99.83
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.83
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.82
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.82
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.82
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.81
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.8
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.8
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.8
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.8
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.8
KOG1030|consensus	168		99.8
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.79
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.79
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.79
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.79
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.79
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.78
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.78
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.78
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.78
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.77
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.77
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.76
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.76
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.76
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.75
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.75
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.75
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.75
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.75
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.75
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.74
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.74
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.74
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.74
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.74
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.74
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.72
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.71
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.71
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.7
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.7
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.68
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.68
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.67
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.67
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.66
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.64
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.63
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.62
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.62
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.61
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.6
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.59
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.55
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.55
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.53
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.51
PLN03008	868	Phospholipase D delta	99.5
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.47
KOG1328|consensus	1103		99.46
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.45
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.44
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.43
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.43
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.42
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.42
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	99.4
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.4
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.39
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.39
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.39
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.39
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.39
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.39
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.38
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.37
KOG1011|consensus	1283		99.37
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.37
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.36
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.36
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.35
KOG0905|consensus	1639		99.35
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.35
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.35
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.34
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.33
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.31
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.31
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.31
PLN02223	537	phosphoinositide phospholipase C	99.3
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.3
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.3
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.29
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.28
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.28
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.28
KOG1327|consensus	529		99.27
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.27
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.26
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.26
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.25
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.25
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.24
KOG1030|consensus	168		99.24
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.24
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.23
PLN02952	599	phosphoinositide phospholipase C	99.22
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.21
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.2
PLN02230	598	phosphoinositide phospholipase C 4	99.2
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.19
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.19
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.18
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.18
PLN02222	581	phosphoinositide phospholipase C 2	99.16
KOG2059|consensus	800		99.15
KOG1031|consensus	1169		99.14
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.14
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.14
KOG1326|consensus	1105		99.13
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.13
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.12
KOG0169|consensus	746		99.12
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.12
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.11
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.1
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.1
PLN02228	567	Phosphoinositide phospholipase C	99.1
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.09
PLN03008	868	Phospholipase D delta	99.08
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.08
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.06
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.05
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.05
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.05
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.04
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.04
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.03
PLN02270	808	phospholipase D alpha	99.03
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.02
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.01
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.01
KOG1264|consensus	1267		99.01
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.01
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.0
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.0
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.0
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	98.98
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	98.98
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	98.97
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	98.97
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	98.95
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	98.95
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	98.95
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	98.94
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	98.94
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	98.94
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	98.93
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	98.92
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.89
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	98.88
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	98.87
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	98.86
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	98.85
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	98.82
KOG1326|consensus	1105		98.82
KOG0696|consensus	683		98.81
KOG1328|consensus	1103		98.81
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	98.81
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	98.77
KOG1013|consensus	362		98.68
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.64
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	98.63
KOG2060|consensus	405		98.63
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.61
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.59
KOG1011|consensus	1283		98.46
PLN02223	537	phosphoinositide phospholipase C	98.41
cd00030	102	C2 C2 domain. The C2 domain was first identified i	98.37
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	98.36
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	98.28
PLN02952	599	phosphoinositide phospholipase C	98.26
KOG0169|consensus	746		98.23
PLN02352	758	phospholipase D epsilon	98.22
PLN02230	598	phosphoinositide phospholipase C 4	98.2
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.09
PLN02222	581	phosphoinositide phospholipase C 2	98.04
KOG1031|consensus	1169		97.95
PLN02228	567	Phosphoinositide phospholipase C	97.93
KOG1264|consensus	1267		97.76
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.67
PLN02270	808	phospholipase D alpha	97.65
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.63
PLN02964	644	phosphatidylserine decarboxylase	97.61
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	97.45
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.42
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.32
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	97.22
KOG1265|consensus	1189		97.16
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	97.12
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	97.08
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	97.07
PLN02352	758	phospholipase D epsilon	96.97
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	96.94
KOG0905|consensus	1639		96.93
KOG3837|consensus	523		96.67
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.59
PF15627	156	CEP76-C2: CEP76 C2 domain	96.55
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	96.51
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	96.5
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	96.44
PLN02964	644	phosphatidylserine decarboxylase	96.16
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.95
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	95.76
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.57
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	94.9
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	94.43
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	94.21
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	93.69
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	93.55
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	93.51
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	93.5
KOG3837|consensus	523		93.38
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	93.36
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	92.97
PF15627	156	CEP76-C2: CEP76 C2 domain	92.92
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	92.85
KOG1452|consensus	442		92.75
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	92.51
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	91.76
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	90.72
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	90.47
PF10409	134	PTEN_C2: C2 domain of PTEN tumour-suppressor prote	90.12
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	89.95
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	88.96
KOG4027|consensus	187		88.05
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	87.85
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	87.37
KOG1265|consensus	1189		87.26
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	86.22
KOG1327|consensus	529		84.71
KOG0906|consensus	843		84.15
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	83.22
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	81.26
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	80.92

>KOG1028|consensus

Probab=100.00  E-value=2.1e-41  Score=282.95  Aligned_cols=208  Identities=36%  Similarity=0.571  Sum_probs=188.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.| .|+..++..+.|.+.|||+|+|++ ++||++.++|+.+.......+|.++.....-          
T Consensus       211 ~tlnP~fnEtf~f-~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~----------  279 (421)
T KOG1028|consen  211 KTLNPVFNETFRF-EVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD----------  279 (421)
T ss_pred             cCcCCccccceEe-ecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCC----------
Confidence            6899999999999 599999999999999999999999 9999999999999877776667666542100          


Q ss_pred             cceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137         80 ECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK  158 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~  158 (224)
                      .....|+|.++++|.+..++|+|.|++|++|+.++..+.+||||++++..+..+ .+++|.+++++.||+|||+|.|.++
T Consensus       280 ~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp  359 (421)
T KOG1028|consen  280 SEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVP  359 (421)
T ss_pred             cccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCC
Confidence            012228999999999999999999999999999999999999999999877644 8899999999999999999999999


Q ss_pred             cCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        159 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       159 ~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      .+.+.+..|.|+||+++.++++++||++.++....+.+..||.+|+++|++++++||.|.+
T Consensus       360 ~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m~~~p~~pv~~wh~l~~  420 (421)
T KOG1028|consen  360 PEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDSTGEEVRHWQEMLNSPRKPVAQWHSLRS  420 (421)
T ss_pred             HHHhheeEEEEEEEEcccccccceeeEEEecCCCCchHHHHHHHHHhCccCceeeeEeccc
Confidence            9999999999999999999999999999999998888999999999999999999999976

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=100.00  E-value=5.7e-35  Score=209.07  Aligned_cols=135  Identities=24%  Similarity=0.329  Sum_probs=125.5

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCC--CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecC
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKIT  160 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~--~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~  160 (224)
                      .|+|.+++.|.+..++|.|.|++|+||+..+  ..+.+||||++++.+...+ .+++|++++++.||+|||+|.|.++..
T Consensus         1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~   80 (138)
T cd08407           1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE   80 (138)
T ss_pred             CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence            3899999999999999999999999999887  3345899999999876544 688999999999999999999999988


Q ss_pred             cccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        161 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       161 ~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      ++.+..|.|+|||++.++++++||++.+++.+.|.+.+||.+|+.+|++.+++||.|.
T Consensus        81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~L~  138 (138)
T cd08407          81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQLH  138 (138)
T ss_pred             HhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEECC
Confidence            8888999999999999999999999999999999999999999999999999999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=100.00  E-value=4.4e-34  Score=204.62  Aligned_cols=135  Identities=30%  Similarity=0.408  Sum_probs=126.5

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      .|+|.+++.|.+..++|.|.|++|+||+..+..|.+||||++++.+.+.+ .+++|++++++.||+|||+|.|.++..++
T Consensus         1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l   80 (136)
T cd08406           1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL   80 (136)
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence            48999999999999999999999999999888899999999999876544 57799999999999999999999988888


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      .+..|.|+||+++.++++++||++.|+..+.|.+.+||.+|+++|+..+++||.|.
T Consensus        81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~WH~l~  136 (136)
T cd08406          81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMWHPLR  136 (136)
T ss_pred             CCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEeeecC
Confidence            88999999999999999999999999999999999999999999999999999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=100.00  E-value=1.6e-33  Score=198.86  Aligned_cols=132  Identities=16%  Similarity=0.265  Sum_probs=119.4

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCC-CCeeceEEEEEeecCcc
Q psy12137         85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTL-NPIFNEEFAIETKITEL  162 (224)
Q Consensus        85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~-~p~~~e~f~f~~~~~~~  162 (224)
                      ++|.+++.|.+..++|+|.|++|+||+.++..+..||||++++.+.+++ .++||++++++. +|.|||+|.|+++.+. 
T Consensus         1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~-   79 (135)
T cd08692           1 AELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE-   79 (135)
T ss_pred             CeEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh-
Confidence            4799999999999999999999999999876777899999999887656 789999999995 6999999999998754 


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCC-CCccchhhhhhcCCCceeEeeeec
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK-GDRLRHWVDMMKYPDHKHEGIHNL  217 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~-~~~~~~w~~l~~~~~~~~~~wh~l  217 (224)
                      .+..|.|+|||++.++++++||++.++.++. +++.+||.+|+.+|++.|++||.|
T Consensus        80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L  135 (135)
T cd08692          80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL  135 (135)
T ss_pred             heeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence            4578999999999999999999999999874 467999999999999999999987

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=100.00  E-value=4.5e-32  Score=195.10  Aligned_cols=134  Identities=27%  Similarity=0.412  Sum_probs=124.2

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      |+|.+++.|.+..++|.|.|++|+||+..+..|.+||||++++.+..++  .+++|++++++.||+|||+|.|.++.+++
T Consensus         2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l   81 (138)
T cd08408           2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL   81 (138)
T ss_pred             CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence            7899999999999999999999999999988889999999999875443  46799999999999999999999988888


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCCC-CccchhhhhhcCCCceeEeeeecC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~-~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      .+..|.|+||+++.++++++||++.+++...+ .+.+||++|+.+|++.|++||.|.
T Consensus        82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l~  138 (138)
T cd08408          82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTLL  138 (138)
T ss_pred             CccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeecC
Confidence            88999999999999999999999999999887 467999999999999999999984

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.98  E-value=2.3e-31  Score=191.57  Aligned_cols=133  Identities=24%  Similarity=0.388  Sum_probs=122.0

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      .|+|++++.|.+..++|.|.|++|+||+..+ .+.+||||++++.+.... .+++|++++++.||.|||+|.|.++..++
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l   79 (137)
T cd08409           1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL   79 (137)
T ss_pred             CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence            4899999999999999999999999999888 778999999999876433 57799999999999999999999988888


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecC--CCCCccchhhhhhcCCCceeEeeeec
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCN--SKGDRLRHWVDMMKYPDHKHEGIHNL  217 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~--~~~~~~~~w~~l~~~~~~~~~~wh~l  217 (224)
                      .+..|.|+||+++.++++++||++.|+..  +.+.+.+||.+|+.+|++.|++||.|
T Consensus        80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l  136 (137)
T cd08409          80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHAL  136 (137)
T ss_pred             CccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeC
Confidence            88899999999998889999999999965  56788999999999999999999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.97  E-value=1.1e-30  Score=188.28  Aligned_cols=135  Identities=36%  Similarity=0.608  Sum_probs=123.7

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      .|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+.+.. ..++|++++++.+|.|||+|.|.++..++
T Consensus         1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l   80 (136)
T cd08402           1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI   80 (136)
T ss_pred             CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence            48999999999999999999999999999888899999999998654333 57789999999999999999999876666


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      ....|.|+|||++.++++++||++.|++.+.+.+..||.+|+..|++.+++||.|+
T Consensus        81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~~~~~wh~~~  136 (136)
T cd08402          81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWHTLQ  136 (136)
T ss_pred             CCCEEEEEEEeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCCeeeEEEEcC
Confidence            66789999999999989999999999999999999999999999999999999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.97  E-value=2.8e-30  Score=185.61  Aligned_cols=133  Identities=30%  Similarity=0.511  Sum_probs=120.6

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137         85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS  163 (224)
Q Consensus        85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~  163 (224)
                      |+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.++... .+++|++++++.||.|||+|.|.++..++.
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~   80 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE   80 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence            7999999999999999999999999999988899999999998654322 578999999999999999999999777777


Q ss_pred             ccEEEEEEEECCCCCCCceeEEEEEecCCCCC-ccchhhhhhcCCCceeEeeeec
Q psy12137        164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGD-RLRHWVDMMKYPDHKHEGIHNL  217 (224)
Q Consensus       164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~-~~~~w~~l~~~~~~~~~~wh~l  217 (224)
                      ...|.|+|||++..+++++||++.|+....+. +..||+.|+++|+.+|++||.|
T Consensus        81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l  135 (135)
T cd08410          81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL  135 (135)
T ss_pred             CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence            67899999999998999999999999877664 6899999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.97  E-value=7.3e-30  Score=183.33  Aligned_cols=132  Identities=61%  Similarity=0.999  Sum_probs=120.8

Q ss_pred             EEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccc
Q psy12137         86 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSK  164 (224)
Q Consensus        86 ~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~  164 (224)
                      .|++++.|....+.|.|+|++|++|+..+..|.+||||++++.+...+ .+.+|++++++.+|.|||+|.|.+...++..
T Consensus         1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~   80 (133)
T cd08384           1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK   80 (133)
T ss_pred             CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence            378999999999999999999999999988889999999999765433 6789999999999999999999987666666


Q ss_pred             cEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137        165 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL  217 (224)
Q Consensus       165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l  217 (224)
                      ..|.|+|||++..+++++||++.+++.+.+....||++|+.+|++.+++||.|
T Consensus        81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~~~~~wh~l  133 (133)
T cd08384          81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAWHTL  133 (133)
T ss_pred             CEEEEEEEeCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCCChheeecC
Confidence            78999999999888899999999999998888999999999999999999986

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.97  E-value=8.4e-30  Score=183.62  Aligned_cols=135  Identities=40%  Similarity=0.658  Sum_probs=123.0

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      .|+|.+++.|.+..+.|.|.|++|+||+..+..|.+||||++++.+.+.. .+.+|++++++.+|.|||+|.|.++.+.+
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~   80 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL   80 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence            58999999999999999999999999998888889999999998654323 57799999999999999999999876666


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      .+..|.|+|||++.++++++||++.+++.+.+.+..||++|+..|++.+++||.|.
T Consensus        81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~~~wh~l~  136 (136)
T cd08405          81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQWHRLK  136 (136)
T ss_pred             CCCEEEEEEEECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCCchhEEEecC
Confidence            66789999999999989999999999999888899999999999999999999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.97  E-value=1.2e-29  Score=182.76  Aligned_cols=135  Identities=32%  Similarity=0.521  Sum_probs=123.2

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      +|+|.++++|....+.|.|.|++|++|+..+..|.+||||++++.+.... .+.+|++++++.||.|||+|.|.++...+
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~   80 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL   80 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence            58999999999999999999999999999988899999999998755323 57899999999999999999999876666


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      ....|.|+|||++.++++++||++.+++.+.+.+..||++|...|++.+.+||.|.
T Consensus        81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~i~~Wh~l~  136 (136)
T cd08404          81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEWHMLC  136 (136)
T ss_pred             CCCEEEEEEEECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCeeeEEEecC
Confidence            66789999999999999999999999999988899999999999999999999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.97  E-value=1.1e-29  Score=182.61  Aligned_cols=133  Identities=32%  Similarity=0.569  Sum_probs=121.8

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137         85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS  163 (224)
Q Consensus        85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~  163 (224)
                      |+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+.+.+ ..++|++++++.+|.|||+|.|.+....+.
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~   80 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD   80 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence            7899999999999999999999999999988899999999998754433 678999999999999999999998766666


Q ss_pred             ccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137        164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL  217 (224)
Q Consensus       164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l  217 (224)
                      ...|.|+|||++.++++++||++.+++.+.+.+..||++|+.+|++.+++||.|
T Consensus        81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~~~~~wh~~  134 (134)
T cd08403          81 NVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRKPIAQWHQL  134 (134)
T ss_pred             CCEEEEEEEECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCCeeeEeecC
Confidence            667999999999999999999999999988888999999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.97  E-value=1.6e-29  Score=174.53  Aligned_cols=116  Identities=22%  Similarity=0.252  Sum_probs=106.2

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccc
Q psy12137         85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK  164 (224)
Q Consensus        85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~  164 (224)
                      |+|++++.|.+..+.|+|.|++|++|+   ..|.+||||++++.++.++.+++|++++++.||+|||+|.|.++.+++.+
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~   77 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLD   77 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCC
Confidence            589999999999999999999999998   23569999999998765457889999999999999999999999999999


Q ss_pred             cEEEEEEEECCCCCCCceeEEEEEecCC--CCCccchhhhh
Q psy12137        165 QTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDM  203 (224)
Q Consensus       165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~~--~~~~~~~w~~l  203 (224)
                      ..|.|+|||+|+++++++||++.+++++  .+.+.+||.+|
T Consensus        78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             cEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            9999999999999999999999999996  47889999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.96  E-value=3.2e-28  Score=175.06  Aligned_cols=133  Identities=38%  Similarity=0.610  Sum_probs=121.3

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137         85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS  163 (224)
Q Consensus        85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~  163 (224)
                      |+|++++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+.... ..++|++++++.+|.|||+|.|.+....+.
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~   80 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE   80 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence            7999999999999999999999999999887889999999999765433 577999999999999999999998766655


Q ss_pred             ccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137        164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL  217 (224)
Q Consensus       164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l  217 (224)
                      ...|.|+||+++..+++++||++.+++++.+.+.+||++|+++|++.+++||.|
T Consensus        81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~wh~~  134 (134)
T cd00276          81 EVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIARWHKL  134 (134)
T ss_pred             CcEEEEEEEecCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCCceEEeeeC
Confidence            678999999999888899999999999997889999999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.95  E-value=2.3e-26  Score=169.72  Aligned_cols=135  Identities=35%  Similarity=0.552  Sum_probs=119.6

Q ss_pred             ceEEEEEEEEeC------------CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeec
Q psy12137         84 HGKIFLTLCFST------------KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFN  150 (224)
Q Consensus        84 ~g~l~i~~~~~~------------~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~  150 (224)
                      +|+|.+++.|.+            ..+.|.|.|++|+||+..+..+.+||||++++.+...+ .+++|++++++.||.||
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn   80 (162)
T cd04020           1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN   80 (162)
T ss_pred             CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence            589999999999            45899999999999999988899999999998765433 78899999999999999


Q ss_pred             eEEEEEe-ecCcccccEEEEEEEECCCCCCCceeEEEEEecCC-------------CCCccchhhhhhcCCCceeEeeee
Q psy12137        151 EEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-------------KGDRLRHWVDMMKYPDHKHEGIHN  216 (224)
Q Consensus       151 e~f~f~~-~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~-------------~~~~~~~w~~l~~~~~~~~~~wh~  216 (224)
                      |+|.|.+ ...++.+..|.|+|||++.++++++||++.+++..             .+.+..||++|+.+|...|++-.|
T Consensus        81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~~~~  160 (162)
T cd04020          81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTLP  160 (162)
T ss_pred             CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEEEEe
Confidence            9999984 34556667899999999999889999999999985             367889999999999999999988


Q ss_pred             cC
Q psy12137        217 LS  218 (224)
Q Consensus       217 l~  218 (224)
                      |.
T Consensus       161 ~~  162 (162)
T cd04020         161 LR  162 (162)
T ss_pred             cC
Confidence            73

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.94  E-value=3e-26  Score=162.55  Aligned_cols=123  Identities=35%  Similarity=0.534  Sum_probs=107.4

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE  161 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~-g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~  161 (224)
                      +|+|++++.|.+..+.|.|.|++|+||+..+.. |.+||||++++.+.... .+++|++++++.||.|||+|.|.+...+
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~   80 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE   80 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence            599999999999999999999999999998875 89999999999876544 5689999999999999999999997777


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      +....|.|+|||++.++++++||++.++|....            .+.....|++|+
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~------------~~~~~~~W~~L~  125 (125)
T cd08393          81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWD------------WSNTQPTWYPLQ  125 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccc------------cCCCCcceEECc
Confidence            777899999999999999999999999998743            123456677764

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.94  E-value=5.6e-26  Score=160.99  Aligned_cols=123  Identities=33%  Similarity=0.535  Sum_probs=108.1

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCC-CCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE  161 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~-~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~  161 (224)
                      .|+|++++.|.+..+.|.|.|++|+||+..+. .|.+||||++++.+...+ .+++|++++++.+|.|||+|.|.++..+
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~   80 (125)
T cd04029           1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ   80 (125)
T ss_pred             CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence            49999999999999999999999999998765 478999999999876543 6789999999999999999999998777


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      +....|.|+|||++.++++++||++.+++.+..            ++..++.|++|+
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~------------~~~~~~~w~~l~  125 (125)
T cd04029          81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN------------FDSQHEECLPLH  125 (125)
T ss_pred             hCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc------------ccCCcccEEECc
Confidence            777889999999999999999999999998743            345688888875

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.94  E-value=6.5e-26  Score=161.03  Aligned_cols=125  Identities=27%  Similarity=0.362  Sum_probs=108.6

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE  161 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~-g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~  161 (224)
                      .|+|++++.|....+.|.|.|++|+||+..+.. |.+||||++++.+..+. .+++|++++++.||+|||+|.|.++..+
T Consensus         1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~   80 (128)
T cd08392           1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL   80 (128)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence            489999999999999999999999999988864 89999999999876544 6889999999999999999999998777


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL  217 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l  217 (224)
                      +....|.|.||+.+.++++++||++.|+|.....         ......+..||+|
T Consensus        81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~---------~~~~~~~~~W~~l  127 (128)
T cd08392          81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDF---------EDTDSQRFLWYPL  127 (128)
T ss_pred             hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCccc---------CCCCccccceEEC
Confidence            8788999999999998899999999999987431         1224466777776

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.94  E-value=5.3e-26  Score=160.21  Aligned_cols=117  Identities=18%  Similarity=0.310  Sum_probs=104.9

Q ss_pred             EEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137         86 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS  163 (224)
Q Consensus        86 ~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~  163 (224)
                      +|++++.|.+..+.|.|.|++|+||+..+..|.+||||++++.++.++  .+++|++++++.||+|||+|.|+++.+++.
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~   81 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY   81 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence            789999999999999999999999999888889999999999987753  588999999999999999999999999999


Q ss_pred             ccEEEEEEEECCCCCCCceeEEEEEecCCCC---Cccchhhh
Q psy12137        164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKG---DRLRHWVD  202 (224)
Q Consensus       164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~---~~~~~w~~  202 (224)
                      +..|.|+||+++.++++++||++.|+|....   ++..+|++
T Consensus        82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~  123 (124)
T cd08680          82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN  123 (124)
T ss_pred             cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence            9999999999999999999999999988642   33455554

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.94  E-value=2.3e-25  Score=157.18  Aligned_cols=108  Identities=31%  Similarity=0.533  Sum_probs=97.5

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEe-ecCc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE  161 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~-~~~~  161 (224)
                      .|+|.+++.|.  .+.|.|.|++|++|+..+ .+.+||||++++.+...+ .+++|++++++.||.|||+|.|.+ +..+
T Consensus         1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~   77 (122)
T cd08381           1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED   77 (122)
T ss_pred             CCeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence            38999999999  799999999999999998 889999999999876544 688999999999999999999997 5566


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEecCCCC
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG  194 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~  194 (224)
                      +....|.|+|||++.++++++||++.|++....
T Consensus        78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~  110 (122)
T cd08381          78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLD  110 (122)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccc
Confidence            777899999999999999999999999998743

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.93  E-value=6.4e-25  Score=158.27  Aligned_cols=125  Identities=24%  Similarity=0.347  Sum_probs=106.5

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK  158 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~  158 (224)
                      ....|+|++++.|  ..+.|.|.|++|+||+..+ ..|.+||||++++.++..+ .+++|++++++.||+|||+|.|.+.
T Consensus        14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~   91 (146)
T cd04028          14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS   91 (146)
T ss_pred             CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc
Confidence            3678999999999  4789999999999998864 4678999999999876544 6889999999999999999999995


Q ss_pred             cCcccccEEEEEEE-ECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        159 ITELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       159 ~~~~~~~~l~i~v~-~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                         +.+..|.|+|| +++.++++++||++.|+|+...            .+..+..||+|.|+..
T Consensus        92 ---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~------------~~~~~~~Wy~L~~~~~  141 (146)
T cd04028          92 ---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLD------------LSNLVIGWYKLFPTSS  141 (146)
T ss_pred             ---CCCCEEEEEEEeCCCCCCCCceEEEEEEEccccc------------CCCCceeEEecCCccc
Confidence               56789999999 5778888999999999998753            2345688888887653

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.93  E-value=1.3e-24  Score=154.59  Aligned_cols=126  Identities=29%  Similarity=0.466  Sum_probs=109.2

Q ss_pred             eceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEE-EeecC
Q psy12137         83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI-ETKIT  160 (224)
Q Consensus        83 ~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~-g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f-~~~~~  160 (224)
                      ..|+|.+++.|....+.|.|.|++|+||+..+.. |.+||||++++.+.. +++.+|++++++.||.|||+|.| .++..
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~-~~~~kT~v~~~t~nP~wnE~F~f~~~~~~   79 (128)
T cd08388           1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK-EHKVKTRVLRKTRNPVYDETFTFYGIPYN   79 (128)
T ss_pred             CCeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc-CceeeccEEcCCCCCceeeEEEEcccCHH
Confidence            3699999999999999999999999999998875 899999999987543 46789999999999999999999 47666


Q ss_pred             cccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        161 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       161 ~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      ++.+..|.|+||+++.++++++||++.++|.....          ..+++.+.|.+|+|
T Consensus        80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~----------~~~~~~~~~~~~~~  128 (128)
T cd08388          80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL----------LNEGELLVSREIQP  128 (128)
T ss_pred             HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCC----------CCCceEEEEEeccC
Confidence            66667899999999999999999999999987541          23457999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.93  E-value=1.3e-24  Score=153.93  Aligned_cols=122  Identities=21%  Similarity=0.296  Sum_probs=109.1

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEE-eecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-TKITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~-~~~~~~  162 (224)
                      .|+|++++.|.+..+.|.|.|++|+||+..+..|.+||||++.+.+.. +.+++|+++++ .||+|||+|.|+ ++..++
T Consensus         2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~-~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l   79 (124)
T cd08389           2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK-KQRAKTKVQRG-PNPVFNETFTFSRVEPEEL   79 (124)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC-cceeecccccC-CCCcccCEEEECCCCHHHh
Confidence            699999999999999999999999999999888899999999887654 47789999888 999999999998 877788


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      .+..|.|+||+++.++++++||++.|+|+...            ++.....|++|+|
T Consensus        80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~------------~~~~~~~w~~L~p  124 (124)
T cd08389          80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLN------------LEGETTVWLTLEP  124 (124)
T ss_pred             ccCEEEEEEEECCCcccCceEEEEEEeccccC------------CCCCceEEEeCCC
Confidence            88899999999999999999999999998753            2456888999886

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.92  E-value=4.2e-24  Score=151.53  Aligned_cols=122  Identities=30%  Similarity=0.454  Sum_probs=106.9

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS  163 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~  163 (224)
                      .|+|++++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+.. ...++|++++++.+|.|||+|.|.++..++.
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~   80 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR-SNTKQSKIHKKTLNPEFDESFVFEVPPQELP   80 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC-CCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence            699999999999999999999999999998888999999999986543 4678999999999999999999998777676


Q ss_pred             ccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      ...|.|+|||++.++++++||++.+++++...            +..+..|++|+
T Consensus        81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~------------~~~~~~W~~l~  123 (124)
T cd08387          81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDL------------SEKLDLWRKIQ  123 (124)
T ss_pred             CCEEEEEEEECCCCCCCceeEEEEEecccccC------------CCCcceEEECc
Confidence            77999999999999899999999999987531            22567787775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.92  E-value=3.2e-24  Score=152.17  Aligned_cols=119  Identities=37%  Similarity=0.639  Sum_probs=104.0

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS  163 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~  163 (224)
                      .|+|.+++.|....+.|.|.|++|+||+..+..+.+||||++++.+.. +..++|++++++.+|.|||+|.|.+...++.
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~   80 (124)
T cd08385           2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK-KKKFETKVHRKTLNPVFNETFTFKVPYSELG   80 (124)
T ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC-CCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence            699999999999999999999999999998888899999999987543 4678999999999999999999998765666


Q ss_pred             ccEEEEEEEECCCCCCCceeEEEEEecCCC--CCccchhhhh
Q psy12137        164 KQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVDM  203 (224)
Q Consensus       164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~--~~~~~~w~~l  203 (224)
                      ...|.|+|||++.++++++||++.++++..  +....+|++|
T Consensus        81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08385          81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL  122 (124)
T ss_pred             CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence            678999999999988999999999999874  3455555554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.91  E-value=1.3e-23  Score=148.78  Aligned_cols=109  Identities=37%  Similarity=0.578  Sum_probs=98.2

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      |+|++++.|....+.|.|.|++|+||+..+ ..+.+||||++++.+.... .+.+|++++++.+|.|||+|.|.+...++
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l   80 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL   80 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence            799999999999999999999999999988 6789999999998765433 67899999999999999999999877666


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK  193 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~  193 (224)
                      ....|.|+||+++.++++++||++.++++..
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l  111 (123)
T cd08521          81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSW  111 (123)
T ss_pred             CCCEEEEEEEeCCCCcCCceeeEEEEecccc
Confidence            6678999999999988999999999999874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.91  E-value=2.3e-23  Score=148.34  Aligned_cols=123  Identities=33%  Similarity=0.552  Sum_probs=106.1

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      .|+|++++.|.+..+.|.|.|++|+||+..+..+.+||||++++.+.... .+++|++++++.+|.|||+|.|.+...++
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l   81 (127)
T cd04030           2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEEL   81 (127)
T ss_pred             CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHh
Confidence            69999999999999999999999999999988889999999999765433 78899999999999999999999877777


Q ss_pred             cccEEEEEEEECCCC--CCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        163 SKQTLVITVWDKDYG--KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~--~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      ....|.|.||+++.+  +++++||++.+++....            .+....+|++|+
T Consensus        82 ~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~L~  127 (127)
T cd04030          82 KRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLD------------LSKGFTQWYDLT  127 (127)
T ss_pred             cCCEEEEEEEECCcccCCCCceEEEEEEeccccc------------ccCCccceEECc
Confidence            778999999999875  67899999999998742            123557777764

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.91  E-value=1.8e-23  Score=146.72  Aligned_cols=117  Identities=24%  Similarity=0.454  Sum_probs=97.8

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137         85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS  163 (224)
Q Consensus        85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~  163 (224)
                      |+|.+++.|  ..+.|.|.|++|+||+.++ .|.+||||++++.++..+ .+++|++++++.+|.|||+|.|.+...++.
T Consensus         1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~   77 (119)
T cd08685           1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ   77 (119)
T ss_pred             CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence            788888888  5899999999999999887 789999999999876544 677999999999999999999998765554


Q ss_pred             ccEEEEEEEECCCCC-CCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137        164 KQTLVITVWDKDYGK-SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL  217 (224)
Q Consensus       164 ~~~l~i~v~~~~~~~-~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l  217 (224)
                       ..|.|+||+++..+ ++++||++.|++....            .+..+.+||+|
T Consensus        78 -~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~------------~~~~~~~Wy~l  119 (119)
T cd08685          78 -KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV------------NQKEISGWYYL  119 (119)
T ss_pred             -CEEEEEEECCCCCcCCCEEEEEEEecHHHhc------------cCccccceEeC
Confidence             47889999998765 4689999999997632            23456777765

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.91  E-value=4.2e-23  Score=146.58  Aligned_cols=123  Identities=33%  Similarity=0.476  Sum_probs=105.2

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEe-ecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET-KITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~-~~~~~  162 (224)
                      .|+|++++.|....+.|.|.|++|+||+..+..+.+||||++++.+.. ....+|++++++.+|.|||+|.|.. +.+.+
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l   80 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK-KHKLETKVKRKNLNPHWNETFLFEGFPYEKL   80 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC-CcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence            599999999999999999999999999998888899999999986543 4678999999999999999999983 33445


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      ....|.|+|||++.++++++||++.+++....            .+.....|+.|+|
T Consensus        81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~l~~  125 (125)
T cd08386          81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVD------------LTEEQTFWKDLKP  125 (125)
T ss_pred             CCCEEEEEEEeCCCCcCCcEeeEEEEeccccc------------CCCCcceEEecCC
Confidence            55689999999999888999999999998743            2345778888776

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.90  E-value=4.7e-23  Score=146.33  Aligned_cols=109  Identities=33%  Similarity=0.590  Sum_probs=97.2

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEe-ecCc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE  161 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~-~~~~  161 (224)
                      .|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+.... .+++|++++++.+|.|||+|.|.+ ...+
T Consensus         2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~   81 (125)
T cd04031           2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET   81 (125)
T ss_pred             cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence            59999999999999999999999999999888889999999999764433 678999999999999999999984 4345


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~  192 (224)
                      +....|.|+|||++.++++++||++.+++..
T Consensus        82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~  112 (125)
T cd04031          82 LKERTLEVTVWDYDRDGENDFLGEVVIDLAD  112 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence            5567899999999998889999999999987

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.90  E-value=1.5e-22  Score=143.36  Aligned_cols=122  Identities=29%  Similarity=0.444  Sum_probs=104.6

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137         85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS  163 (224)
Q Consensus        85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~  163 (224)
                      |+|.+++.|....+.|.|.|++|++|+..+ ..+.+||||++++.+.. ....+|++++++.+|.|||.|.|.++...+.
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~-~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~   79 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE-RRSLQSKVKRKTQNPNFDETFVFQVSFKELQ   79 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC-CCceEeeeEcCCCCCccceEEEEEcCHHHhc
Confidence            899999999999999999999999999987 57889999999987543 4567899999999999999999998766666


Q ss_pred             ccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      ...|.|.||+++..+++++||++.++++....            ......|++|.|
T Consensus        80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~------------~~~~~~w~~L~~  123 (123)
T cd08390          80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL------------VKGGVVWRDLEP  123 (123)
T ss_pred             ccEEEEEEEECCcCCCCcEEEEEEEeccceec------------CCCceEEEeCCC
Confidence            67899999999998889999999999987431            234567777754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>KOG1013|consensus

Probab=99.90  E-value=6.3e-24  Score=165.98  Aligned_cols=216  Identities=34%  Similarity=0.538  Sum_probs=190.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +++||+|||+-....+..++.....+++.|.|-+.+.+ +++|+..+++..+...+...+..+|+...+..    .....
T Consensus       139 n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~----rad~~  214 (362)
T KOG1013|consen  139 NTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSE----RADRD  214 (362)
T ss_pred             cCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcc----ccccc
Confidence            58999999999998888888888999999999999999 99999999999998777666555555543322    11223


Q ss_pred             cceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137         80 ECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK  158 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~  158 (224)
                      +.+.+|+|.+++.|......+.|.++++..|..+|.+|-+||||+.++.++.+. -+++|.+.+.+.+|.|++.|.|.+.
T Consensus       215 ~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~  294 (362)
T KOG1013|consen  215 EDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIG  294 (362)
T ss_pred             chhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCC
Confidence            347899999999999999999999999999999999999999999999877655 6789999999999999999999999


Q ss_pred             cCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        159 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       159 ~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      +.++....+.|.+||++..+..+.+|-+..+....++-.+||...+-.++..+..||-|...
T Consensus       295 pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~  356 (362)
T KOG1013|consen  295 PGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLETE  356 (362)
T ss_pred             ccchhcceEEEeecccCCCcCccCCCcccccccccchhhcCccccccccccccccccccccc
Confidence            99999899999999999988899999999999999999999999999999999999999743

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.88  E-value=1.1e-21  Score=137.14  Aligned_cols=111  Identities=20%  Similarity=0.228  Sum_probs=90.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEec---CCCCCeEeeeeeeCCCCCeeceEEEEEeecC-cccccEEEEEEEEC
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP---DLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-ELSKQTLVITVWDK  174 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~---~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~-~~~~~~l~i~v~~~  174 (224)
                      +|+|.|++|++|+..+ .|.+||||++++.+   +...++++|+++.++.||+|||+|.|.+..+ .+....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            4899999999999876 48999999999863   1112567999999999999999999998754 45567899999999


Q ss_pred             CCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        175 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       175 ~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                      +..+++++||++.|++....            ++.....|++|.+.-.
T Consensus        80 d~~~~dd~IG~~~l~l~~~~------------~~~~~~~w~~L~~~~~  115 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIA------------QAGSCACWLPLGRRIH  115 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCc------------CCCcEEEEEECcCccc
Confidence            98888999999999988743            3445788999876543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>KOG0696|consensus

Probab=99.88  E-value=1.4e-22  Score=164.04  Aligned_cols=134  Identities=33%  Similarity=0.587  Sum_probs=119.6

Q ss_pred             CcccccCcccceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCee
Q psy12137         71 REEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIF  149 (224)
Q Consensus        71 ~~~~~~~~~~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~  149 (224)
                      ..++.||.++++.+|.|.+.+..  ....|.|.|.+|+||.+++.+|.+||||++++.++.+. .+++|++++.++||+|
T Consensus       155 nVPslCG~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~w  232 (683)
T KOG0696|consen  155 NVPSLCGTDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVW  232 (683)
T ss_pred             cCCcccCCcchhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccc
Confidence            46678999999999999888876  68899999999999999999999999999999987655 7889999999999999


Q ss_pred             ceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCCC-CccchhhhhhcCC
Q psy12137        150 NEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMKYP  207 (224)
Q Consensus       150 ~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~-~~~~~w~~l~~~~  207 (224)
                      ||+|+|.+.+.+. +..|.|+|||+|+.++++++|...++++... .+..-||++++..
T Consensus       233 NEtftf~Lkp~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKlLsqe  290 (683)
T KOG0696|consen  233 NETFTFKLKPSDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQE  290 (683)
T ss_pred             cceeEEecccccc-cceeEEEEecccccccccccceecccHHHHhhcchhhHHHHhhhh
Confidence            9999999986654 4789999999999999999999999999754 6778899998744

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.87  E-value=1.5e-21  Score=138.82  Aligned_cols=107  Identities=24%  Similarity=0.344  Sum_probs=89.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeec---CcccccEEEEEEEECCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI---TELSKQTLVITVWDKDY  176 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~---~~~~~~~l~i~v~~~~~  176 (224)
                      +.|+|++|+||+..+..|.+||||++++    ++.+++|++++++.||.|||.|.|.+..   .++....|.|.||+++.
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l----~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~   76 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQL----GKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL   76 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEE----CCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence            4799999999999888899999999998    5678899999999999999999999864   12456789999999999


Q ss_pred             CCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        177 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      ++++++||++.|++...          ...++..+.+|++|.+.
T Consensus        77 ~~~d~~iG~~~i~l~~l----------~~~~~~~~~~W~~L~~~  110 (126)
T cd08682          77 LGLDKFLGQVSIPLNDL----------DEDKGRRRTRWFKLESK  110 (126)
T ss_pred             cCCCceeEEEEEEHHHh----------hccCCCcccEEEECcCC
Confidence            88899999999998752          22234556777777653

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>KOG2059|consensus

Probab=99.87  E-value=9.7e-22  Score=166.61  Aligned_cols=193  Identities=23%  Similarity=0.368  Sum_probs=154.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      |+|.|.|+|+|.| .|+..   ...|.|.|||.| +++ +.||++.|.-+++..+++++-|+.|.+.           +.
T Consensus        47 ksL~PF~gEe~~~-~iP~~---F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~V-----------D~  110 (800)
T KOG2059|consen   47 KSLCPFFGEEFYF-EIPRT---FRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPV-----------DP  110 (800)
T ss_pred             hhcCCccccceEE-ecCcc---eeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceecccc-----------CC
Confidence            6899999999999 79888   889999999999 998 9999999999999988899888888652           23


Q ss_pred             cceeceEEEEEEEEeC--CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEe
Q psy12137         80 ECWQHGKIFLTLCFST--KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET  157 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~~--~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~  157 (224)
                      ..+..|+|++.+.+..  ....+.+.++++|++.+.. ++.+|||+++...++...+..+|++++++.+|.|+|.|.|.+
T Consensus       111 dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~  189 (800)
T KOG2059|consen  111 DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEV  189 (800)
T ss_pred             ChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeee
Confidence            3589999999988765  3456778888888876654 456999999998655433668999999999999999999997


Q ss_pred             ecC-------------cccccEEEEEEEE-CCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        158 KIT-------------ELSKQTLVITVWD-KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       158 ~~~-------------~~~~~~l~i~v~~-~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                      ...             +.....|.+.+|+ .+...+++|+|++.+++...-            -...-+.|+.|+|.+.
T Consensus       190 ~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~------------~~s~p~~W~~Lqp~~~  256 (800)
T KOG2059|consen  190 TREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLR------------QKSSPAAWYYLQPRPN  256 (800)
T ss_pred             ccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhh------------hccCccceEEEecCCC
Confidence            544             0012468899998 445556899999999987521            1234568888888764

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.86  E-value=1.6e-20  Score=134.58  Aligned_cols=109  Identities=36%  Similarity=0.485  Sum_probs=96.3

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC---CCeEeeeeeeCCCCCeeceEEEEEeecC
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---KRKYKTGVKWKTLNPIFNEEFAIETKIT  160 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~---~~~~~T~~~~~~~~p~~~e~f~f~~~~~  160 (224)
                      .|+|.+++.|......|.|.|++|++|+..+..|.+||||++++.+...   ...++|++++++.+|+|||+|.|.+...
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~   81 (133)
T cd04009           2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE   81 (133)
T ss_pred             ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence            6999999999999999999999999999988888999999999875432   3688999999999999999999998542


Q ss_pred             c--ccccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137        161 E--LSKQTLVITVWDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       161 ~--~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~  192 (224)
                      .  .....|.|+|||++.++++++||++.+++++
T Consensus        82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~  115 (133)
T cd04009          82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLND  115 (133)
T ss_pred             hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHH
Confidence            2  3356899999999999889999999999885

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.86  E-value=9.1e-21  Score=137.44  Aligned_cols=111  Identities=26%  Similarity=0.389  Sum_probs=88.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee-------------cCcccc
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK-------------ITELSK  164 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~-------------~~~~~~  164 (224)
                      +|.|.|++|++|+.  .+|.+||||++++.+...+ .+++|++++++.||+|||+|.|.+.             ..++..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            47899999999987  5689999999999765433 6789999999999999999999984             224445


Q ss_pred             cEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        165 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                      ..|.|.||+++.++++++||++.|++......           ......|++|.|...
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~-----------~~~~~~W~~L~~~~~  125 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ-----------AGSHQAWYFLQPREE  125 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEeccccccc-----------CCcCcceeecCCccc
Confidence            68999999999888899999999999874421           123466777766543

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.85  E-value=2.7e-20  Score=130.40  Aligned_cols=86  Identities=12%  Similarity=0.218  Sum_probs=76.4

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeC-CCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~-~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      |.|.|+|++|++++..+ .|.+||||++.+    +.++++|+++.+ +.||.|||+|.|.+...   ...|.|+|||++.
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l----g~~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~   73 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV----GHAVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERA   73 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEE----CCEEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCC
Confidence            68999999999988766 689999999999    667889999876 79999999999998532   3579999999999


Q ss_pred             CCCCceeEEEEEecC
Q psy12137        177 GKSNDYLGCLELCCN  191 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~  191 (224)
                      +++|++||.+.+++.
T Consensus        74 ~~~dd~iG~~~i~l~   88 (121)
T cd04016          74 FTMDERIAWTHITIP   88 (121)
T ss_pred             CcCCceEEEEEEECc
Confidence            999999999999995

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.85  E-value=3.6e-20  Score=131.14  Aligned_cols=112  Identities=33%  Similarity=0.482  Sum_probs=96.9

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEE-eecCc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKITE  161 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~-~~~~~  161 (224)
                      .|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||++.+.+...+ ...+|++++++.+|.|||.|.|. +...+
T Consensus         1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~   80 (123)
T cd04035           1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED   80 (123)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence            48999999999999999999999999998887889999999998755433 67899999999999999999996 54344


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCc
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDR  196 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~  196 (224)
                      +....|.|+|||++.+ ++++||++.++++.....
T Consensus        81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~  114 (123)
T cd04035          81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPN  114 (123)
T ss_pred             hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence            5557899999999988 789999999999875533

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.85  E-value=1.6e-20  Score=130.29  Aligned_cols=107  Identities=28%  Similarity=0.357  Sum_probs=90.1

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCee-ceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137        100 LIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVITVWDKDYG  177 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~-~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~-~e~f~f~~~~~~~~~~~l~i~v~~~~~~  177 (224)
                      |.|+|++|++|+.++. .|.+||||++++    +...++|++++++.+|.| ||+|.|.++...+....|.|+|||++.+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~----~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~   76 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKF----GSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY   76 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEE----CCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC
Confidence            5799999999998874 688999999998    458889999999999999 9999999976666667999999999999


Q ss_pred             CCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        178 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       178 ~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      +++++||++.+++......         .+...+.+|++|..
T Consensus        77 ~~~~~iG~~~~~l~~l~~~---------~~~~~~~~w~~l~~  109 (110)
T cd08688          77 SANDAIGKVYIDLNPLLLK---------DSVSQISGWFPIYD  109 (110)
T ss_pred             CCCCceEEEEEeHHHhccc---------CCccccCCeEEccc
Confidence            8999999999999763210         23445888888864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.84  E-value=5.1e-20  Score=126.69  Aligned_cols=103  Identities=29%  Similarity=0.337  Sum_probs=89.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      |.|+|++|++|+..+..+.+||||++++    +++.++|++++++.+|.|||.|.|.+..  .....|.|+||+++.   
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~~l~v~v~d~~~---   72 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTV----GKTTQKSKVKERTNNPVWEEGFTFLVRN--PENQELEIEVKDDKT---   72 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEE----CCEEEeCccccCCCCCcccceEEEEeCC--CCCCEEEEEEEECCC---
Confidence            7899999999999888889999999999    5688899999999999999999999853  334689999999875   


Q ss_pred             CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137        180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  221 (224)
Q Consensus       180 ~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~  221 (224)
                      +++||++.+++..          +...++..+.+||+|.+++
T Consensus        73 ~~~iG~~~i~l~~----------l~~~~~~~~~~w~~L~~~g  104 (105)
T cd04050          73 GKSLGSLTLPLSE----------LLKEPDLTLDQPFPLDNSG  104 (105)
T ss_pred             CCccEEEEEEHHH----------hhccccceeeeeEecCCCC
Confidence            7899999999865          4555667899999998775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=6.8e-20  Score=129.21  Aligned_cols=101  Identities=17%  Similarity=0.183  Sum_probs=84.3

Q ss_pred             EEEEEEEeec---CCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137        100 LIVNLIKCTN---LIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus       100 l~v~i~~a~~---L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      |.|+|++|++   |+..+..|.+||||++++    +.++.+|++++++.||+|||+|.|.+..  . ...|.|+|||++.
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~----g~~~~rTk~~~~~~nP~WnE~f~f~v~~--~-~~~l~v~V~d~d~   74 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY----GPKWVRTRTVEDSSNPRWNEQYTWPVYD--P-CTVLTVGVFDNSQ   74 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEE----CCEEeEcCcccCCCCCcceeEEEEEecC--C-CCEEEEEEEECCC
Confidence            7899999999   788888899999999998    6678899999999999999999999843  2 3589999999987


Q ss_pred             C------CCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        177 G------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       177 ~------~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      +      +++++||++.+++.+..            .+..+..|++|.+
T Consensus        75 ~~~~~~~~~dd~lG~~~i~l~~l~------------~~~~~~~~~~L~~  111 (126)
T cd08379          75 SHWKEAVQPDVLIGKVRIRLSTLE------------DDRVYAHSYPLLS  111 (126)
T ss_pred             ccccccCCCCceEEEEEEEHHHcc------------CCCEEeeEEEeEe
Confidence            6      37999999999988643            2335566666663

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>KOG1028|consensus

Probab=99.83  E-value=8.3e-20  Score=153.27  Aligned_cols=113  Identities=36%  Similarity=0.555  Sum_probs=105.9

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecC
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT  160 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~  160 (224)
                      ....|+|++++.|......|.|.|++|++|+..+..|.+||||++++.++. +.+++|++++++.||.|||+|.|.++..
T Consensus       150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk-~~k~kT~v~r~tlnP~fnEtf~f~v~~~  228 (421)
T KOG1028|consen  150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK-KGKFKTRVHRKTLNPVFNETFRFEVPYE  228 (421)
T ss_pred             ceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC-CCcceeeeeecCcCCccccceEeecCHH
Confidence            478899999999999999999999999999999977789999999999876 7899999999999999999999999888


Q ss_pred             cccccEEEEEEEECCCCCCCceeEEEEEecCCCC
Q psy12137        161 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG  194 (224)
Q Consensus       161 ~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~  194 (224)
                      ++....|.++||++|+++++++||++.++|....
T Consensus       229 ~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~  262 (421)
T KOG1028|consen  229 ELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVD  262 (421)
T ss_pred             HhccCEEEEEEEecCCcccccEEEEEEecCcccc
Confidence            8999999999999999999999999999987643

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.83  E-value=9.8e-20  Score=130.29  Aligned_cols=107  Identities=40%  Similarity=0.692  Sum_probs=92.6

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      +|+|.+++.|..  +.|.|.|++|++|+..+..+.+||||++.+.+.... ..++|++++++.+|.|||+|.|.+...+ 
T Consensus         1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~-   77 (131)
T cd04026           1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD-   77 (131)
T ss_pred             CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh-
Confidence            589999999986  999999999999998888889999999998654333 7889999999999999999999985433 


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK  193 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~  193 (224)
                      ....|.|+||+++..+++++||++.+++...
T Consensus        78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l  108 (131)
T cd04026          78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSEL  108 (131)
T ss_pred             cCCEEEEEEEECCCCCCcceeEEEEEeHHHh
Confidence            2468999999999888899999999998764

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=2e-19  Score=131.03  Aligned_cols=89  Identities=26%  Similarity=0.330  Sum_probs=78.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeC-CCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  177 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~-~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~  177 (224)
                      .|.|+|++|++|+..+..|.+||||++++    +.+..+|++..+ +.||.|||.|.|.+.  +.....|.|.||+++..
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l----~~~~~kTk~~~~~t~nP~WNE~F~f~v~--~~~~~~l~v~V~d~~~~   74 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQL----GNQVLRTRPSQTRNGNPSWNEELMFVAA--EPFEDHLILSVEDRVGP   74 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEE----CCEEeeeEeccCCCCCCcccCcEEEEec--CccCCeEEEEEEEecCC
Confidence            37899999999999998999999999999    567889998866 699999999999984  33446899999999988


Q ss_pred             CCCceeEEEEEecCCC
Q psy12137        178 KSNDYLGCLELCCNSK  193 (224)
Q Consensus       178 ~~~~~lG~~~l~l~~~  193 (224)
                      +++++||++.|+++..
T Consensus        75 ~~dd~lG~v~i~L~~l   90 (150)
T cd04019          75 NKDEPLGRAVIPLNDI   90 (150)
T ss_pred             CCCCeEEEEEEEHHHC
Confidence            8899999999999874

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.82  E-value=4.8e-19  Score=124.05  Aligned_cols=89  Identities=40%  Similarity=0.643  Sum_probs=79.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  178 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~  178 (224)
                      .++|.|++|++|+..+..+.+||||++++    ++...+|++++++.+|.|||+|.|.+..  .....|.|+|||++..+
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~~l~v~v~d~~~~~   74 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRL----GNEKYKSKVCSKTLNPQWLEQFDLHLFD--DQSQILEIEVWDKDTGK   74 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEE----CCEeEecccccCCCCCceeEEEEEEecC--CCCCEEEEEEEECCCCC
Confidence            37899999999999988889999999998    5577899999999999999999999853  33578999999999988


Q ss_pred             CCceeEEEEEecCCC
Q psy12137        179 SNDYLGCLELCCNSK  193 (224)
Q Consensus       179 ~~~~lG~~~l~l~~~  193 (224)
                      ++++||++.+++...
T Consensus        75 ~~~~iG~~~~~l~~l   89 (116)
T cd08376          75 KDEFIGRCEIDLSAL   89 (116)
T ss_pred             CCCeEEEEEEeHHHC
Confidence            899999999998763

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=2.5e-19  Score=127.50  Aligned_cols=91  Identities=26%  Similarity=0.477  Sum_probs=78.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeec-CcccccEEEEEEEECCCC
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-TELSKQTLVITVWDKDYG  177 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~-~~~~~~~l~i~v~~~~~~  177 (224)
                      +|.|.|++|++|+..+..|.+||||++++    +.++++|++++++.||.|||.|.|.+.. ..+....|.|+||+++.+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~----~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~   76 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDF----DGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS   76 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEE----CCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence            47999999999999888889999999998    5577899999999999999999999853 223346899999999887


Q ss_pred             C-CCceeEEEEEecCCC
Q psy12137        178 K-SNDYLGCLELCCNSK  193 (224)
Q Consensus       178 ~-~~~~lG~~~l~l~~~  193 (224)
                      + ++++||++.+++...
T Consensus        77 ~~~d~~lG~v~i~l~~l   93 (127)
T cd04022          77 GRRRSFLGRVRISGTSF   93 (127)
T ss_pred             cCCCCeeeEEEEcHHHc
Confidence            6 789999999999863

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.81  E-value=3.3e-19  Score=123.83  Aligned_cols=94  Identities=28%  Similarity=0.440  Sum_probs=81.3

Q ss_pred             CEEEEEEEEeecCCCCCCC-CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcc-cccEEEEEEEECC
Q psy12137         98 RALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITEL-SKQTLVITVWDKD  175 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~-g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~-~~~~l~i~v~~~~  175 (224)
                      |.|.|.|++|++|+..+.. +.+||||++++.+. ++..++|++++++.||.|||.|.|.+...++ ....|.|+|||++
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKF-GKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccC-CCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence            5799999999999998887 89999999998543 2467899999999999999999998754433 3468999999999


Q ss_pred             CCCCCceeEEEEEecCC
Q psy12137        176 YGKSNDYLGCLELCCNS  192 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~  192 (224)
                      .++++++||++.+++..
T Consensus        80 ~~~~dd~lG~~~i~l~~   96 (111)
T cd04041          80 RFTADDRLGRVEIDLKE   96 (111)
T ss_pred             CCCCCCcceEEEEEHHH
Confidence            99899999999999876

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.80  E-value=1e-18  Score=123.69  Aligned_cols=89  Identities=30%  Similarity=0.535  Sum_probs=78.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  178 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~  178 (224)
                      +|+|+|++|++|+..+..+.+||||++++    +....+|++++++.+|.|||+|.|.+...  ....|.|+|||++..+
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~~~v~d~~~~~   74 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY----NGQTLETSVVKKSCYPRWNEVFEFELMEG--ADSPLSVEVWDWDLVS   74 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEE----CCEEEeceeecCCCCCccCcEEEEEcCCC--CCCEEEEEEEECCCCC
Confidence            58999999999999888889999999998    45678999999999999999999998532  2468999999999988


Q ss_pred             CCceeEEEEEecCCC
Q psy12137        179 SNDYLGCLELCCNSK  193 (224)
Q Consensus       179 ~~~~lG~~~l~l~~~  193 (224)
                      ++++||++.+++...
T Consensus        75 ~~~~iG~~~~~l~~l   89 (123)
T cd04025          75 KNDFLGKVVFSIQTL   89 (123)
T ss_pred             CCcEeEEEEEEHHHc
Confidence            899999999998764

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.80  E-value=7.8e-19  Score=121.04  Aligned_cols=90  Identities=29%  Similarity=0.416  Sum_probs=77.8

Q ss_pred             CEEEEEEEEeecCCCCCCC----CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEE
Q psy12137         98 RALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD  173 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~----g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~  173 (224)
                      |.|.|+|++|++|+..+..    +.+||||++++    ++..++|++++++.||.|||.|.|.+..... ...|.|+|||
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~----~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~D   75 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF----GRRVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVLD   75 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE----CCEeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEEE
Confidence            5799999999999987532    35899999998    5677899999999999999999999854332 3589999999


Q ss_pred             CCCCCCCceeEEEEEecCC
Q psy12137        174 KDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       174 ~~~~~~~~~lG~~~l~l~~  192 (224)
                      ++.++++++||++.++|+.
T Consensus        76 ~d~~~~dd~IG~~~l~L~~   94 (108)
T cd04039          76 KDKFSFNDYVATGSLSVQE   94 (108)
T ss_pred             CCCCCCCcceEEEEEEHHH
Confidence            9999999999999999986

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.80  E-value=1.5e-18  Score=122.21  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=84.8

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137        100 LIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  178 (224)
Q Consensus       100 l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~  178 (224)
                      |.|.|++|+||+..+ ..|.+||||++++.   +....+|++++++.+|.|||.|.|.++..   ...|.|.||+++.++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~---~~~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~~   75 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD---QEEVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVLR   75 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC---CccEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCCC
Confidence            678999999999874 45789999999982   22578999999999999999999999632   368999999999998


Q ss_pred             CCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        179 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       179 ~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      ++++||++.++++....            +.....|++|+|.
T Consensus        76 ~~~~iG~~~i~l~~l~~------------~~~~~~w~~L~~~  105 (121)
T cd08401          76 RDSVIGKVAIKKEDLHK------------YYGKDTWFPLQPV  105 (121)
T ss_pred             CCceEEEEEEEHHHccC------------CCCcEeeEEEEcc
Confidence            99999999999876431            3346778887764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.80  E-value=1.5e-18  Score=124.54  Aligned_cols=111  Identities=29%  Similarity=0.380  Sum_probs=91.0

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      ..|.|.|.|++|++|+..+..|.+||||++++    +...++|++++++.||.|||+|.|.+.  ++....|.|+|||++
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~----~~~~~kT~vi~~t~nP~Wne~f~f~v~--~~~~~~l~i~V~D~d   86 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM----GSQEHKTKVVSDTLNPKWNSSMQFFVK--DLEQDVLCITVFDRD   86 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE----CCEeeeccccCCCCCCccCceEEEEec--CccCCEEEEEEEECC
Confidence            46889999999999999988899999999998    567899999999999999999999984  444578999999999


Q ss_pred             CCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        176 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      .++++++||++.+++.+.-...       ...+..+.+|+.|..
T Consensus        87 ~~~~d~~lG~~~i~l~~l~~~~-------~~~~~~~~~~~~~~~  123 (136)
T cd08375          87 FFSPDDFLGRTEIRVADILKET-------KESKGPITKRLLLHE  123 (136)
T ss_pred             CCCCCCeeEEEEEEHHHhcccc-------ccCCCcEEEEecccc
Confidence            9888999999999987632110       112345677777753

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.80  E-value=1.7e-18  Score=121.81  Aligned_cols=105  Identities=26%  Similarity=0.368  Sum_probs=86.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      |.|.|++|++|+..+..+.+||||++++.+. +..+++|++++++.||.|||+|.|.+...  ....|.|+|||++.+ +
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~-~~~~~kT~vv~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~-~   77 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTA-SDEKKRTKTIKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV-M   77 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCC-CCccCccceecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC-C
Confidence            6899999999999887889999999998432 23678999999999999999999998543  345799999999988 8


Q ss_pred             CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       180 ~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      +++||++.++++...            ++..+..|++|.+.
T Consensus        78 ~~~iG~~~~~l~~l~------------~g~~~~~~~~L~~~  106 (119)
T cd04036          78 DDHLGTVLFDVSKLK------------LGEKVRVTFSLNPQ  106 (119)
T ss_pred             CcccEEEEEEHHHCC------------CCCcEEEEEECCCC
Confidence            899999999997643            24466777777664

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>KOG1030|consensus

Probab=99.80  E-value=7.5e-19  Score=126.17  Aligned_cols=98  Identities=33%  Similarity=0.396  Sum_probs=86.1

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      .|-|.|.|++|.||...|..+.+||||.+.+    ++++.+|++..++.||+|||.|.|.+.  ++ ...|+++|||+|.
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l----g~q~lkT~~v~~n~NPeWNe~ltf~v~--d~-~~~lkv~VyD~D~   77 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL----GNQKLKTRVVYKNLNPEWNEELTFTVK--DP-NTPLKVTVYDKDT   77 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEE----CCeeeeeeeecCCCCCcccceEEEEec--CC-CceEEEEEEeCCC
Confidence            4678999999999998887789999999999    789999999999999999999999995  33 4799999999999


Q ss_pred             CCCCceeEEEEEecCCCCCccchhh
Q psy12137        177 GKSNDYLGCLELCCNSKGDRLRHWV  201 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~~~~~~~~w~  201 (224)
                      +++|++||.++|++...-.....|+
T Consensus        78 fs~dD~mG~A~I~l~p~~~~~~~~~  102 (168)
T KOG1030|consen   78 FSSDDFMGEATIPLKPLLEAQKMDY  102 (168)
T ss_pred             CCcccccceeeeccHHHHHHhhhhc
Confidence            9999999999999986444444444

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.79  E-value=2.9e-18  Score=123.33  Aligned_cols=110  Identities=29%  Similarity=0.444  Sum_probs=89.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecC-------------cccccE
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-------------ELSKQT  166 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~-------------~~~~~~  166 (224)
                      |.|.|++|++|+.. ..|.+||||++++..+.....++|++++++.+|.|||+|.|.+...             ++....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57899999999988 7789999999998644325788999999999999999999997542             235678


Q ss_pred             EEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        167 LVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       167 l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                      |.|+|||++.++++++||++.+++....            .......|++|.|...
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~------------~~~~~~~W~~L~~~~~  123 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQ------------QAGSHQAWYFLQPREA  123 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhcc------------CCCcccceEecCCcCC
Confidence            9999999998888999999999987632            2335677888877653

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.79  E-value=2e-18  Score=119.97  Aligned_cols=105  Identities=25%  Similarity=0.285  Sum_probs=85.6

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeec--CcccccEEEEEEEEC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI--TELSKQTLVITVWDK  174 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~--~~~~~~~l~i~v~~~  174 (224)
                      ...|.|.|++|++|+    .|.+||||++++    +.++++|++++++.+|.|||.|.|.+..  .++.+..|.|+|||+
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~----~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~   74 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEV----GGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDS   74 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEE----CCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcC
Confidence            467899999999998    568999999999    4567899999999999999999999632  234456899999999


Q ss_pred             CCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        175 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       175 ~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      +.++++++||++.++++....+.         ....+.+|++|.
T Consensus        75 ~~~~~~~~iG~~~i~l~~v~~~~---------~~~~~~~w~~L~  109 (111)
T cd04011          75 RSLRSDTLIGSFKLDVGTVYDQP---------DHAFLRKWLLLT  109 (111)
T ss_pred             cccccCCccEEEEECCccccCCC---------CCcceEEEEEee
Confidence            99888999999999998742211         124678899886

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.79  E-value=4.5e-18  Score=120.39  Aligned_cols=117  Identities=26%  Similarity=0.320  Sum_probs=93.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  178 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~  178 (224)
                      .|+|.|++|++|+..+..|.+||||++++.+.  ....+|.+++++.+|.|||+|.|.+.  ......|.|+|||++.++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~~kT~~v~~t~nP~Wne~f~f~~~--~~~~~~L~~~V~d~d~~~   76 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK--KINDRDNYIPNTLNPVFGKMFELEAT--LPGNSILKISVMDYDLLG   76 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe--eccceeeEEECCCCCccceEEEEEec--CCCCCEEEEEEEECCCCC
Confidence            37899999999999988899999999998311  13467888889999999999999873  233568999999999998


Q ss_pred             CCceeEEEEEecCCCCCccchhhhhhcCCCce----eEeeeecCCC
Q psy12137        179 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK----HEGIHNLSIK  220 (224)
Q Consensus       179 ~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~----~~~wh~l~~~  220 (224)
                      ++++||++.+++.+... ..||+.+...+...    +..||-|.|.
T Consensus        77 ~dd~iG~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (124)
T cd04037          77 SDDLIGETVIDLEDRFF-SKHRATCGLPPTYEESGPNQWRDSLKPS  121 (124)
T ss_pred             CCceeEEEEEeeccccc-chHHHhccCCCcccccCceecCcccCcc
Confidence            99999999999987654 67898887766543    4455555554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.79  E-value=4.6e-18  Score=119.96  Aligned_cols=101  Identities=28%  Similarity=0.480  Sum_probs=83.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  178 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~  178 (224)
                      +|.|.|++|++|+..+..|.+||||++++.   ++..++|++++++.+|.|||.|.|.+.  .+ ...|.|+|||++..+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~---~~~~~kT~~~~~t~nP~Wne~f~f~v~--~~-~~~l~~~v~D~d~~~   74 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG---GKTVYKSKTIYKNLNPVWDEKFTLPIE--DV-TQPLYIKVFDYDRGL   74 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC---CEEEEEeeeccCCCCCccceeEEEEec--CC-CCeEEEEEEeCCCCC
Confidence            478999999999999888999999999983   236789999999999999999999984  33 368999999999998


Q ss_pred             CCceeEEEEEecCCC--CCccchhhhhhc
Q psy12137        179 SNDYLGCLELCCNSK--GDRLRHWVDMMK  205 (224)
Q Consensus       179 ~~~~lG~~~l~l~~~--~~~~~~w~~l~~  205 (224)
                      ++++||++.+++...  +...+.|+.|.+
T Consensus        75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~  103 (121)
T cd04042          75 TDDFMGSAFVDLSTLELNKPTEVKLKLED  103 (121)
T ss_pred             CCcceEEEEEEHHHcCCCCCeEEEEECCC
Confidence            999999999999863  333444555543

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.79  E-value=1e-18  Score=126.91  Aligned_cols=107  Identities=22%  Similarity=0.346  Sum_probs=86.5

Q ss_pred             EEEEEEEEeecCCCCCCC--------------CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccc
Q psy12137         99 ALIVNLIKCTNLIPMDSN--------------GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK  164 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~--------------g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~  164 (224)
                      .|.|+|++|++|+.++..              +.+||||++.+    +.++.+|++++++.||+|||+|.|.+..... .
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~----~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~-~   75 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSF----AGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL-C   75 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEE----CCEeeecceEcCCCCCCcceEEEEEeeCCCc-C
Confidence            378999999999998744              36899999998    5567799999999999999999999643333 3


Q ss_pred             cEEEEEEEECCCCCCCceeEEEEEecCCCC-Ccc--------chhhhhhcCCCce
Q psy12137        165 QTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRL--------RHWVDMMKYPDHK  210 (224)
Q Consensus       165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~-~~~--------~~w~~l~~~~~~~  210 (224)
                      ..|.|+|||++..+++++||++.+++.... .+.        .+|+.|...|+..
T Consensus        76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~  130 (151)
T cd04018          76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY  130 (151)
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence            689999999999989999999999988532 222        4677777776654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.78  E-value=2.4e-18  Score=120.83  Aligned_cols=101  Identities=24%  Similarity=0.351  Sum_probs=83.3

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeee-CCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~-~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      |.|.|.|++|++|+..+..+.+||||++++    +...++|+++. .+.||.|||.|.|.+...  ....|.|+|||++.
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~----~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~   74 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRI----GGVTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDK   74 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEE----CCCccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCC
Confidence            579999999999999888899999999998    45677888765 478999999999998643  34689999999988


Q ss_pred             CCCCceeEEEEEecCCC--CCccchhhhhhc
Q psy12137        177 GKSNDYLGCLELCCNSK--GDRLRHWVDMMK  205 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~~--~~~~~~w~~l~~  205 (224)
                      .+ +++||++.+++...  +....+|++|..
T Consensus        75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~  104 (118)
T cd08681          75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTL  104 (118)
T ss_pred             CC-CcceEEEEEecHHHhhcCCCCCcEEecc
Confidence            76 88999999999852  344567777654

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.78  E-value=4.7e-18  Score=118.58  Aligned_cols=84  Identities=20%  Similarity=0.235  Sum_probs=71.4

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      ++.|.|+|++||+|+..+   ..||||++++    ++++.+|++.++ .||.|||.|.|.+.  ... ..|.|+|||++.
T Consensus         1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~----g~~k~kT~v~~~-~nP~WnE~F~F~~~--~~~-~~L~v~V~dkd~   69 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKV----QNVKSTTIAVRG-SQPCWEQDFMFEIN--RLD-LGLVIELWNKGL   69 (127)
T ss_pred             CceEEEEEEEeeCCCCCC---CCCCeEEEEE----CCEEeEeeECCC-CCCceeeEEEEEEc--CCC-CEEEEEEEeCCC
Confidence            368999999999996543   4589999999    667889999877 49999999999984  333 459999999997


Q ss_pred             CCCCceeEEEEEecCC
Q psy12137        177 GKSNDYLGCLELCCNS  192 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~  192 (224)
                      + +|++||++.|+|++
T Consensus        70 ~-~DD~lG~v~i~L~~   84 (127)
T cd08394          70 I-WDTLVGTVWIPLST   84 (127)
T ss_pred             c-CCCceEEEEEEhHH
Confidence            6 79999999999986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.78  E-value=8.3e-18  Score=120.85  Aligned_cols=111  Identities=19%  Similarity=0.252  Sum_probs=86.0

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeec-----Cccc--ccEEEEE
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-----TELS--KQTLVIT  170 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~-----~~~~--~~~l~i~  170 (224)
                      .+|.|.|++|++|+..+..|.+||||++.+    +..+++|++++++.||.|||.|.|.+..     ..+.  ...|.|+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~----~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~   76 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSF----LNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE   76 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEE----CCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence            368999999999999998999999999998    4578899999999999999999998421     1111  2478999


Q ss_pred             EEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        171 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      |||++..+++++||++.+........        ..++....+||+|...
T Consensus        77 V~d~d~~~~d~~iG~~~i~~~~~~~~--------~~~~~~~~~W~~L~~~  118 (135)
T cd04017          77 LFDQDSVGKDEFLGRSVAKPLVKLDL--------EEDFPPKLQWFPIYKG  118 (135)
T ss_pred             EEeCcCCCCCccceEEEeeeeeeccc--------CCCCCCCceEEEeecC
Confidence            99999988999999999743211100        0145677888888743

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.78  E-value=6e-18  Score=120.50  Aligned_cols=89  Identities=29%  Similarity=0.441  Sum_probs=79.4

Q ss_pred             CEEEEEEEEeecCCCCCC--CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137         98 RALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~--~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      |.|.|.|++|++|+..+.  .+.+||||++++    +....+|++++++.+|.|||.|.|.+..  .....|.|+|||++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~----~~~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~   74 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV----GAQRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKD   74 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE----CCEEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECC
Confidence            578999999999998887  789999999998    5678899999999999999999999853  34578999999999


Q ss_pred             CCCCCceeEEEEEecCC
Q psy12137        176 YGKSNDYLGCLELCCNS  192 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~  192 (224)
                      ..+++++||++.+++..
T Consensus        75 ~~~~~~~lG~~~i~l~~   91 (128)
T cd04024          75 RFAGKDYLGEFDIALEE   91 (128)
T ss_pred             CCCCCCcceEEEEEHHH
Confidence            98889999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=7e-18  Score=118.65  Aligned_cols=101  Identities=32%  Similarity=0.499  Sum_probs=85.8

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  177 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~  177 (224)
                      |.|.|+|++|++|+..+..+.+||||++++    +....+|++++++.+|.|+|+|.|.+.  +. ...|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~----~~~~~~T~~~~~t~nP~W~e~f~~~~~--~~-~~~l~~~v~d~~~~   73 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLEL----VNARLQTHTIYKTLNPEWNKIFTFPIK--DI-HDVLEVTVYDEDKD   73 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEE----CCEeeecceecCCcCCccCcEEEEEec--Cc-CCEEEEEEEECCCC
Confidence            578999999999999888889999999998    455679999999999999999999984  22 36899999999988


Q ss_pred             CCCceeEEEEEecCCCCCccchhhhhhc
Q psy12137        178 KSNDYLGCLELCCNSKGDRLRHWVDMMK  205 (224)
Q Consensus       178 ~~~~~lG~~~l~l~~~~~~~~~w~~l~~  205 (224)
                      +++++||++.+++.....+..+|+.+..
T Consensus        74 ~~~~~iG~~~~~l~~~~~~~~~~~~l~~  101 (119)
T cd08377          74 KKPEFLGKVAIPLLSIKNGERKWYALKD  101 (119)
T ss_pred             CCCceeeEEEEEHHHCCCCCceEEECcc
Confidence            8899999999999876555556666654

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.77  E-value=6.8e-18  Score=119.00  Aligned_cols=103  Identities=26%  Similarity=0.389  Sum_probs=83.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      |.|+|++|++|+..+..|.+||||++++.   +....+|++++++.+|.|||.|.|.+...   ...|.|.||+++.+++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~---~~~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~~~   75 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD---NEVIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTLSR   75 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEEC---CEeeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCCCC
Confidence            78999999999999988999999999982   22457999999999999999999998532   3689999999999989


Q ss_pred             CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       180 ~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      +++||++.++++..          . ..+..++.|++|.+
T Consensus        76 d~~iG~~~~~~~~~----------~-~~~~~~~~W~~L~~  104 (121)
T cd04054          76 DDVIGKVSLTREVI----------S-AHPRGIDGWMNLTE  104 (121)
T ss_pred             CCEEEEEEEcHHHh----------c-cCCCCCCcEEECee
Confidence            99999999997542          1 12224566777765

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.76  E-value=1.7e-17  Score=120.03  Aligned_cols=112  Identities=27%  Similarity=0.270  Sum_probs=90.2

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  177 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~  177 (224)
                      |.|.|.|++|++|+..+. +.+||||++++    +.+.++|++++++.||.|||.|.|.+..  . ...|.|+|||++.+
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~----g~~~~kT~vvk~t~nP~WnE~f~f~i~~--~-~~~l~~~V~D~d~~   73 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL----GNQKVKTRVIKKNLNPVWNEELTLSVPN--P-MAPLKLEVFDKDTF   73 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEE----CCEEEEeeeEcCCCCCeecccEEEEecC--C-CCEEEEEEEECCCC
Confidence            679999999999998876 78999999998    5688999999999999999999999853  2 56899999999999


Q ss_pred             CCCceeEEEEEecCCCC-CccchhhhhhcCCCceeEeeeecC
Q psy12137        178 KSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       178 ~~~~~lG~~~l~l~~~~-~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      +++++||++.+++...- ....+|..-. ..+..+.+|.+-.
T Consensus        74 ~~dd~iG~a~i~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~  114 (145)
T cd04038          74 SKDDSMGEAEIDLEPLVEAAKLDHLRDT-PGGTQIKKVLPSV  114 (145)
T ss_pred             CCCCEEEEEEEEHHHhhhhhhhhccccC-CCCEEEEEEecCC
Confidence            99999999999998632 2222222222 3355788887743

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.76  E-value=1.5e-17  Score=118.08  Aligned_cols=86  Identities=26%  Similarity=0.446  Sum_probs=74.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      |.|+|++|+||+.  ..|.+||||++++..  ...+++|++++++.||.|||.|.|.+...   ...|.|+|||++..++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~--~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~~   73 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE--PPQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKSD   73 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECC--CCcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCCC
Confidence            5799999999987  668999999999831  13678999999999999999999998532   4689999999999888


Q ss_pred             CceeEEEEEecCC
Q psy12137        180 NDYLGCLELCCNS  192 (224)
Q Consensus       180 ~~~lG~~~l~l~~  192 (224)
                      +++||++.++++.
T Consensus        74 ~~~lG~~~i~l~~   86 (126)
T cd08678          74 SKFLGLAIVPFDE   86 (126)
T ss_pred             CceEEEEEEeHHH
Confidence            9999999999986

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.76  E-value=1.1e-17  Score=117.86  Aligned_cols=84  Identities=31%  Similarity=0.444  Sum_probs=73.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  178 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~  178 (224)
                      .|.|+|++|+||+..    .+||||++++    +....+|++++++.||.|||+|.|.+.  .+....|.|+|||++.. 
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l----~~~~~kT~v~~~t~nP~Wne~F~f~~~--~~~~~~L~~~v~d~d~~-   69 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKL----GNYKGSTKAIERTSNPEWNQVFAFSKD--RLQGSTLEVSVWDKDKA-   69 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEE----CCccccccccCCCCCCccceEEEEEcC--CCcCCEEEEEEEeCCCC-
Confidence            378999999999876    6899999998    457889999999999999999999973  44567899999999977 


Q ss_pred             CCceeEEEEEecCCC
Q psy12137        179 SNDYLGCLELCCNSK  193 (224)
Q Consensus       179 ~~~~lG~~~l~l~~~  193 (224)
                      ++++||++.++++..
T Consensus        70 ~~~~lG~~~i~l~~l   84 (121)
T cd08378          70 KDDFLGGVCFDLSEV   84 (121)
T ss_pred             cCceeeeEEEEhHhC
Confidence            788999999999864

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.75  E-value=7.5e-18  Score=122.60  Aligned_cols=95  Identities=35%  Similarity=0.616  Sum_probs=80.0

Q ss_pred             EeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-------------------------CeEeeeeeeCCCCC
Q psy12137         93 FSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-------------------------RKYKTGVKWKTLNP  147 (224)
Q Consensus        93 ~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-------------------------~~~~T~~~~~~~~p  147 (224)
                      ..+..+.|.|.|++|++|+..+..|.+||||++++.+...+                         ..++|++++++.+|
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP  102 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP  102 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence            45667889999999999999998999999999998543211                         24789999999999


Q ss_pred             eeceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCC
Q psy12137        148 IFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK  193 (224)
Q Consensus       148 ~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~  193 (224)
                      .|||+|.|.+.  .+....|.|+|||++    +++||++.++++..
T Consensus       103 ~WnE~F~f~v~--~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l  142 (153)
T cd08676         103 VWNETFRFEVE--DVSNDQLHLDIWDHD----DDFLGCVNIPLKDL  142 (153)
T ss_pred             ccccEEEEEec--cCCCCEEEEEEEecC----CCeEEEEEEEHHHh
Confidence            99999999984  444578999999987    78999999998763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.75  E-value=1.5e-17  Score=117.28  Aligned_cols=88  Identities=30%  Similarity=0.520  Sum_probs=76.5

Q ss_pred             CEEEEEEEEeecCCCCCC------CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEE
Q psy12137         98 RALIVNLIKCTNLIPMDS------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV  171 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~------~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v  171 (224)
                      |.|.|.|++|++|+..+.      .|.+||||++++    ++..++|++++++.+|.|||.|.|.+.  ......|.|+|
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~----~~~~~kT~~~~~t~~P~W~e~f~~~v~--~~~~~~l~i~v   74 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRV----GAQTFKSKVIKENLNPKWNEVYEAVVD--EVPGQELEIEL   74 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEE----CCEeEEccccCCCCCCcccceEEEEeC--CCCCCEEEEEE
Confidence            568999999999998764      368999999998    457899999999999999999999984  33457899999


Q ss_pred             EECCCCCCCceeEEEEEecCC
Q psy12137        172 WDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       172 ~~~~~~~~~~~lG~~~l~l~~  192 (224)
                      ||++.. ++++||++.+++..
T Consensus        75 ~d~~~~-~~~~iG~~~i~l~~   94 (121)
T cd08391          75 FDEDPD-KDDFLGRLSIDLGS   94 (121)
T ss_pred             EecCCC-CCCcEEEEEEEHHH
Confidence            999987 88999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.75  E-value=3.2e-17  Score=117.53  Aligned_cols=91  Identities=31%  Similarity=0.423  Sum_probs=78.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCC-CC--CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HK--RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~-~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      |.|.|++|++|+..+..|.+||||++++.+.. +.  ...+|++++++.+|.|||+|.|.+...   ...|.|+|||++.
T Consensus         2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~   78 (133)
T cd04033           2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDENR   78 (133)
T ss_pred             EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECCC
Confidence            78999999999998888899999999986431 11  367999999999999999999998543   3579999999999


Q ss_pred             CCCCceeEEEEEecCCC
Q psy12137        177 GKSNDYLGCLELCCNSK  193 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~~  193 (224)
                      ++++++||++.+++.+.
T Consensus        79 ~~~~~~iG~~~i~l~~l   95 (133)
T cd04033          79 LTRDDFLGQVEVPLNNL   95 (133)
T ss_pred             CCCCCeeEEEEEEHHHC
Confidence            98899999999998863

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=3e-17  Score=116.70  Aligned_cols=100  Identities=27%  Similarity=0.536  Sum_probs=82.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC-
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG-  177 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~-  177 (224)
                      .|.|.|++|++|+..+..|.+||||++++    +....+|++++++.+|.|||.|.|.+...   ...|.|+|||++.. 
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~----~~~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~~   74 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQV----GKTKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDDDI   74 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEE----CCEeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCCCc
Confidence            68999999999999888889999999998    45678999999999999999999987422   35899999998852 


Q ss_pred             ----------CCCceeEEEEEecCCCCCccchhhhhhc
Q psy12137        178 ----------KSNDYLGCLELCCNSKGDRLRHWVDMMK  205 (224)
Q Consensus       178 ----------~~~~~lG~~~l~l~~~~~~~~~w~~l~~  205 (224)
                                +.+++||++.+++........+|+.|..
T Consensus        75 ~~~~~~~~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~  112 (127)
T cd04027          75 KSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEK  112 (127)
T ss_pred             ccccceeccccCCCcceEEEEEhHHccCCCCeEEECcc
Confidence                      4688999999998875554555655553

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.75  E-value=6.4e-17  Score=114.89  Aligned_cols=91  Identities=30%  Similarity=0.500  Sum_probs=78.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  178 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~  178 (224)
                      .+.|.|++|++|+..+..+.+||||++.+.+. +....+|++++++.+|.|||+|.|.+...  ....|.|+||+++..+
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~-~~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~~   78 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG-KRRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFVG   78 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCC-CeeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCCC
Confidence            57899999999999888889999999986321 13568999999999999999999998543  3468999999999888


Q ss_pred             CCceeEEEEEecCC
Q psy12137        179 SNDYLGCLELCCNS  192 (224)
Q Consensus       179 ~~~~lG~~~l~l~~  192 (224)
                      ++++||++.+++..
T Consensus        79 ~~~~iG~~~i~l~~   92 (126)
T cd04043          79 KHDLCGRASLKLDP   92 (126)
T ss_pred             CCceEEEEEEecCH
Confidence            89999999999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.75  E-value=2.5e-17  Score=119.69  Aligned_cols=106  Identities=20%  Similarity=0.290  Sum_probs=84.8

Q ss_pred             EEEEEEEeec--CCCCCCCCCCCcEEEEEEe-cCCCCCeEeeeeeeCCCCCeeceEEEEEeecC------cccccEEEEE
Q psy12137        100 LIVNLIKCTN--LIPMDSNGFSDPFIKLYLK-PDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT------ELSKQTLVIT  170 (224)
Q Consensus       100 l~v~i~~a~~--L~~~~~~g~~dpyv~~~~~-~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~------~~~~~~l~i~  170 (224)
                      ..+.|..|++  ++..+.++.+||||++++. +..+.++.+|++++++.||+|||+|.|.+...      .+....|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            4556666666  6777777889999999974 43334899999999999999999999999654      2446789999


Q ss_pred             EEECCCC-CCCceeEEEEEecCCC--CCccchhhhhhc
Q psy12137        171 VWDKDYG-KSNDYLGCLELCCNSK--GDRLRHWVDMMK  205 (224)
Q Consensus       171 v~~~~~~-~~~~~lG~~~l~l~~~--~~~~~~w~~l~~  205 (224)
                      |||++.+ ++|++||++.++|...  .....+|.+|+.
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~  121 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD  121 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh
Confidence            9999875 5799999999999975  445667888764

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.74  E-value=4.7e-17  Score=115.28  Aligned_cols=108  Identities=22%  Similarity=0.313  Sum_probs=86.2

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeC-CCCCeeceEEEEEeecCcc-cccEEEEEEEECC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITEL-SKQTLVITVWDKD  175 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~-~~~p~~~e~f~f~~~~~~~-~~~~l~i~v~~~~  175 (224)
                      |.|.|.|++|++|+..+..+.+||||++++    +...++|++.++ +.+|.|||.|.|.+..... ....|.|+|||++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~----~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~   76 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQC----RTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD   76 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEE----CCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence            578999999999998887889999999998    456678888764 8999999999999864321 2468999999999


Q ss_pred             CCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137        176 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  221 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~  221 (224)
                      .++++++||++.+++.+.          +.  +.....|+.|.|.+
T Consensus        77 ~~~~d~~iG~~~i~l~~l----------~~--~~~~~~~~~l~p~~  110 (124)
T cd04049          77 NFSDDDFIGEATIHLKGL----------FE--EGVEPGTAELVPAK  110 (124)
T ss_pred             cCCCCCeEEEEEEEhHHh----------hh--CCCCcCceEeeccc
Confidence            988899999999998762          21  22456777777654

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.74  E-value=6.8e-17  Score=114.65  Aligned_cols=86  Identities=17%  Similarity=0.343  Sum_probs=71.3

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      ..|.|.|++|+||+..   +.+||||++++    ++ +..+|++. ++.||.|||.|.|.+....+  ..+.|.|||++.
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l----~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~--~~l~v~v~d~~~   73 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISL----NEVKVARTKVR-EGPNPVWSEEFVFDDLPPDV--NSFTISLSNKAK   73 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEE----CCEeEEEeecC-CCCCCccCCEEEEecCCCCc--CEEEEEEEECCC
Confidence            4689999999999864   47899999999    34 55788875 57999999999998643322  478899999999


Q ss_pred             CCCCceeEEEEEecCCC
Q psy12137        177 GKSNDYLGCLELCCNSK  193 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~~  193 (224)
                      ++++++||++.+++...
T Consensus        74 ~~~d~~iG~v~i~l~~l   90 (126)
T cd08400          74 RSKDSEIAEVTVQLSKL   90 (126)
T ss_pred             CCCCCeEEEEEEEHhHc
Confidence            99999999999998863

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.74  E-value=3.5e-17  Score=115.60  Aligned_cols=91  Identities=25%  Similarity=0.437  Sum_probs=77.8

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      ..+.|.|.|++|++|+. +..+.+||||++++    ++++++|++++++.+|+|||+|.|..... .....|.|+|||++
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~----~~~~~kT~vi~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d   99 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFF----GGQEKRTEVIWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRD   99 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEE----CCccccCceecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCC
Confidence            36788999999999984 56678999999998    45688999999999999999999974211 23468999999999


Q ss_pred             CCCCCceeEEEEEecCC
Q psy12137        176 YGKSNDYLGCLELCCNS  192 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~  192 (224)
                      .++++++||++.+++..
T Consensus       100 ~~s~dd~IG~~~i~l~~  116 (127)
T cd04032         100 NGWDDDLLGTCSVVPEA  116 (127)
T ss_pred             CCCCCCeeEEEEEEecC
Confidence            99999999999999985

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.74  E-value=6.4e-17  Score=113.73  Aligned_cols=110  Identities=17%  Similarity=0.239  Sum_probs=88.0

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  177 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~  177 (224)
                      |.|.|.|++|++|+..+..+.+||||++++.   +....+|++++++.+|.|||.|.|.+...   ...|.|+||+++..
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~---~~~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~~   74 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN---GIVKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEKV   74 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEEC---CEEeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCCC
Confidence            5789999999999998888999999999982   22678999999999999999999987432   36899999999999


Q ss_pred             CCCceeEEEEEecCCC-CCccchhhhhhcCCCceeEe
Q psy12137        178 KSNDYLGCLELCCNSK-GDRLRHWVDMMKYPDHKHEG  213 (224)
Q Consensus       178 ~~~~~lG~~~l~l~~~-~~~~~~w~~l~~~~~~~~~~  213 (224)
                      +++++||++.+++... ......||.+++.......+
T Consensus        75 ~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  111 (120)
T cd04045          75 GKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLKR  111 (120)
T ss_pred             CCCCeeeEEEEeHHHhhCCCCCceEEecCCCcceeeE
Confidence            8999999999998753 23445566666555444333

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.74  E-value=3.4e-17  Score=120.44  Aligned_cols=102  Identities=25%  Similarity=0.349  Sum_probs=82.0

Q ss_pred             CCEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCC
Q psy12137         97 KRALIVNLIKCTNLIPMD------------------------------SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTL  145 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~------------------------------~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~  145 (224)
                      .|.|.|+|++|++|+.++                              ..|.+||||++++    ++ +..+|++++++.
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l----~~~~~~rT~v~~~~~   81 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL----AGARVARTRVIENSE   81 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEE----CCeEeeEEEEeCCCC
Confidence            578999999999999876                              3467899999998    44 457999999999


Q ss_pred             CCeeceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCC--CCccchhhhhhcC
Q psy12137        146 NPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVDMMKY  206 (224)
Q Consensus       146 ~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~--~~~~~~w~~l~~~  206 (224)
                      ||.|||+|.|.+..  . ...|.|.|||++.++ +++||++.++++..  +...++|++|...
T Consensus        82 nP~WnE~F~~~~~~--~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~  140 (158)
T cd04015          82 NPVWNESFHIYCAH--Y-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS  140 (158)
T ss_pred             CCccceEEEEEccC--C-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC
Confidence            99999999998742  2 357999999999875 57999999998863  3444556666543

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.74  E-value=7.2e-17  Score=115.55  Aligned_cols=89  Identities=24%  Similarity=0.403  Sum_probs=75.8

Q ss_pred             CCEEEEEEEEeecCCCCCC----------CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccE
Q psy12137         97 KRALIVNLIKCTNLIPMDS----------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQT  166 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~----------~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~  166 (224)
                      .+.|.|+|++|++|+..+.          .+.+||||++++.   +.+..+|++++++.+|.|||+|.|.+.    ....
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~---~~~~~kT~~~~~t~~P~Wne~f~~~v~----~~~~   75 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD---DTHIGKTSTKPKTNSPVWNEEFTTEVH----NGRN   75 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC---CEEEeEEeEcCCCCCCCcceeEEEEcC----CCCE
Confidence            3678999999999988765          2578999999983   224578999999999999999999985    2468


Q ss_pred             EEEEEEECCCCCCCceeEEEEEecCC
Q psy12137        167 LVITVWDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       167 l~i~v~~~~~~~~~~~lG~~~l~l~~  192 (224)
                      |.|.||+++.++++++||++.+++++
T Consensus        76 l~~~v~d~~~~~~~~~iG~~~i~l~~  101 (132)
T cd04014          76 LELTVFHDAAIGPDDFVANCTISFED  101 (132)
T ss_pred             EEEEEEeCCCCCCCceEEEEEEEhHH
Confidence            99999999988889999999999875

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.72  E-value=6.6e-17  Score=114.77  Aligned_cols=98  Identities=19%  Similarity=0.327  Sum_probs=82.3

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  177 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~  177 (224)
                      ..|+|.|++|++|+..+..|.+||||++.+    +.+..+|++++++.+|.|||.|.|.+..  . ...|.|+|||++..
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~-~~~l~i~V~d~~~~   75 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKC----EGESVRSPVQKDTLSPEFDTQAIFYRKK--P-RSPIKIQVWNSNLL   75 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEE----CCEEEEeCccCCCCCCcccceEEEEecC--C-CCEEEEEEEECCCC
Confidence            578999999999999888899999999987    4578899999999999999999998742  2 46899999999887


Q ss_pred             CCCceeEEEEEecCCCCCccchhhhh
Q psy12137        178 KSNDYLGCLELCCNSKGDRLRHWVDM  203 (224)
Q Consensus       178 ~~~~~lG~~~l~l~~~~~~~~~w~~l  203 (224)
                      + +++||.+.++++.......+|+.|
T Consensus        76 ~-d~~lG~~~~~l~~~~~~~~~~~~l  100 (126)
T cd04046          76 C-DEFLGQATLSADPNDSQTLRTLPL  100 (126)
T ss_pred             C-CCceEEEEEecccCCCcCceEEEc
Confidence            4 789999999998654444444444

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.71  E-value=1.9e-16  Score=111.89  Aligned_cols=86  Identities=26%  Similarity=0.436  Sum_probs=76.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      |.|.|++|++|+..+..+.+||||++++.   +.+.++|++++++.||.|||.|.|.+..    ...|.|+|||++.+++
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~~   74 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVD---GGQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFKK   74 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEEC---CccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCCC
Confidence            78999999999998888999999999983   2578899999999999999999999853    4699999999998765


Q ss_pred             --CceeEEEEEecCC
Q psy12137        180 --NDYLGCLELCCNS  192 (224)
Q Consensus       180 --~~~lG~~~l~l~~  192 (224)
                        +++||++.+++..
T Consensus        75 ~~d~~lG~~~i~l~~   89 (123)
T cd08382          75 KDQGFLGCVRIRANA   89 (123)
T ss_pred             CCCceEeEEEEEHHH
Confidence              4799999999886

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.71  E-value=3.6e-16  Score=111.21  Aligned_cols=95  Identities=23%  Similarity=0.216  Sum_probs=77.6

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCCCcee
Q psy12137        104 LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYL  183 (224)
Q Consensus       104 i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~l  183 (224)
                      |++|++|+.  ..|.+||||++++    ++.+++|++++++.+|.|||+|.|.+.........|.|+||+++..+++++|
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~----~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~i   75 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTF----RGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLI   75 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEE----CCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceE
Confidence            689999988  5678999999998    4567899999999999999999999853323457899999999998889999


Q ss_pred             EEEEEecCCCC--Cccchhhhhh
Q psy12137        184 GCLELCCNSKG--DRLRHWVDMM  204 (224)
Q Consensus       184 G~~~l~l~~~~--~~~~~w~~l~  204 (224)
                      |++.++++...  .....|+.|.
T Consensus        76 G~~~~~l~~l~~~~~~~~~~~L~   98 (127)
T cd08373          76 GSATVSLQDLVSEGLLEVTEPLL   98 (127)
T ss_pred             EEEEEEhhHcccCCceEEEEeCc
Confidence            99999998633  2334455554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.70  E-value=1e-15  Score=109.64  Aligned_cols=108  Identities=20%  Similarity=0.266  Sum_probs=82.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC---------CCeEeeeeeeCCCCCee-ceEEEEEeecCcccccEEE
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---------KRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLV  168 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~---------~~~~~T~~~~~~~~p~~-~e~f~f~~~~~~~~~~~l~  168 (224)
                      .+.|.+++|++|+ .+..|.+||||++++.+...         .+.++|++++++.||.| ||.|.|.+..    +..|.
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~----~~~L~   76 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP----TDVLE   76 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC----CCEEE
Confidence            3678999999998 66678999999999975432         24789999999999999 9999999843    35899


Q ss_pred             EEEEECCCCCC---CceeEEEEEecCCCCCccchhhhhhcCC-CceeEeeeecCCCC
Q psy12137        169 ITVWDKDYGKS---NDYLGCLELCCNSKGDRLRHWVDMMKYP-DHKHEGIHNLSIKP  221 (224)
Q Consensus       169 i~v~~~~~~~~---~~~lG~~~l~l~~~~~~~~~w~~l~~~~-~~~~~~wh~l~~~~  221 (224)
                      |+|||++..++   +++||++.+++.+.          ++.+ ......|++|....
T Consensus        77 v~V~D~~~~~~~~~~d~lG~~~i~l~~l----------~~~~~~~~~~~~~~l~k~~  123 (137)
T cd08691          77 IEVKDKFAKSRPIIRRFLGKLSIPVQRL----------LERHAIGDQELSYTLGRRT  123 (137)
T ss_pred             EEEEecCCCCCccCCceEEEEEEEHHHh----------cccccCCceEEEEECCcCC
Confidence            99999765433   68999999998863          1111 22366677776443

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.70  E-value=5.4e-16  Score=108.33  Aligned_cols=105  Identities=34%  Similarity=0.515  Sum_probs=85.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      |.|.|++|++|+..+..+.+||||++.+.   +...++|+++.++.+|.|||+|.|.+...  ....|.|+||+++..++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~---~~~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~~   75 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLN---GEKVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGGK   75 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEEC---CCcceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCCC
Confidence            57899999999998878889999999983   23668999999999999999999998532  45689999999998888


Q ss_pred             CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137        180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  221 (224)
Q Consensus       180 ~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~  221 (224)
                      +++||++.+++....            .+.....|.+|.+..
T Consensus        76 ~~~iG~~~~~l~~l~------------~~~~~~~~~~L~~~g  105 (115)
T cd04040          76 DDLLGSAYIDLSDLE------------PEETTELTLPLDGQG  105 (115)
T ss_pred             CCceEEEEEEHHHcC------------CCCcEEEEEECcCCC
Confidence            999999999987632            133467777776554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.68  E-value=5.2e-16  Score=108.74  Aligned_cols=98  Identities=23%  Similarity=0.340  Sum_probs=77.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      |.|.|++|++|+..   |.+||||.+++.   +...++|+++++ .+|.|||+|.|.+...++....|.|.+|+.+...+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~---~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~   74 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLD---QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDR   74 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEEC---CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCC
Confidence            68999999999875   789999999983   225679999988 99999999999997655555688899999887766


Q ss_pred             CceeEEEEEecCCCCCccchhhhhh
Q psy12137        180 NDYLGCLELCCNSKGDRLRHWVDMM  204 (224)
Q Consensus       180 ~~~lG~~~l~l~~~~~~~~~w~~l~  204 (224)
                      +..+|.+.|.....+...++|+.|.
T Consensus        75 ~~~~g~v~l~~~~~~~~~~~w~~L~   99 (117)
T cd08383          75 DIVIGKVALSKLDLGQGKDEWFPLT   99 (117)
T ss_pred             eeEEEEEEecCcCCCCcceeEEECc
Confidence            7788888877655554455555554

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.68  E-value=6.5e-16  Score=106.49  Aligned_cols=84  Identities=26%  Similarity=0.259  Sum_probs=71.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEEC----
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK----  174 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~----  174 (224)
                      |.|.|.+|+||+     +.+||||++.+.+.+. ....+|++++++.||.|||+|.|.+.  .  ...|.+.|||+    
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~--s~~L~~~v~d~~~~~   71 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--G--SQTLRILCYEKCYSK   71 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--C--CCEEEEEEEEccccc
Confidence            579999999995     4589999999876543 36899999999999999999999984  2  46999999998    


Q ss_pred             ---CCCCCCceeEEEEEecCC
Q psy12137        175 ---DYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       175 ---~~~~~~~~lG~~~l~l~~  192 (224)
                         +..++|+++|++.+.|+.
T Consensus        72 ~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          72 VKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccccccCcccEEEEEEEEECH
Confidence               466789999999999874

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.67  E-value=7.2e-16  Score=109.34  Aligned_cols=91  Identities=19%  Similarity=0.288  Sum_probs=76.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeee-CCCCCeeceEEEEEeecCcc--cccEEEEEEEECC
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITEL--SKQTLVITVWDKD  175 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~-~~~~p~~~e~f~f~~~~~~~--~~~~l~i~v~~~~  175 (224)
                      .|.|.|++|++|+..+..+.+||||++++.+   ..+++|++.. ++.+|.|||.|.|.+....+  ....|.|+|||++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~---~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~   77 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER   77 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC---CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence            3789999999999988888999999999831   2678888875 57999999999999854421  2468999999999


Q ss_pred             CCCCCceeEEEEEecCC
Q psy12137        176 YGKSNDYLGCLELCCNS  192 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~  192 (224)
                      .++++++||++.+++.+
T Consensus        78 ~~~~~~~lG~~~i~l~~   94 (125)
T cd04051          78 PSLGDKLIGEVRVPLKD   94 (125)
T ss_pred             CCCCCCcEEEEEEEHHH
Confidence            88889999999999886

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.67  E-value=6e-16  Score=107.25  Aligned_cols=91  Identities=26%  Similarity=0.357  Sum_probs=74.5

Q ss_pred             EEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc----ccEEEEEEEEC
Q psy12137        101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS----KQTLVITVWDK  174 (224)
Q Consensus       101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~----~~~l~i~v~~~  174 (224)
                      .+..++|++|+..+..|.+||||++++.+..+.  ..++|++++++.+|.|| .|.|.+  ..+.    ...|.|+|||+
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~--~~l~~~~~~~~l~~~V~d~   79 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPL--QKLCNGDYDRPIKIEVYDY   79 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEH--HHhcCCCcCCEEEEEEEEe
Confidence            455679999999998899999999998654312  56899999999999999 577664  2332    46899999999


Q ss_pred             CCCCCCceeEEEEEecCCCC
Q psy12137        175 DYGKSNDYLGCLELCCNSKG  194 (224)
Q Consensus       175 ~~~~~~~~lG~~~l~l~~~~  194 (224)
                      +..+++++||++.++++..-
T Consensus        80 d~~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          80 DSSGKHDLIGEFETTLDELL   99 (110)
T ss_pred             CCCCCCcEEEEEEEEHHHHh
Confidence            99999999999999998754

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.66  E-value=3e-15  Score=105.39  Aligned_cols=88  Identities=32%  Similarity=0.407  Sum_probs=74.1

Q ss_pred             EEEEeecCCCCCCCCCCCcEEEEEEecCC--CC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC---
Q psy12137        103 NLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY---  176 (224)
Q Consensus       103 ~i~~a~~L~~~~~~g~~dpyv~~~~~~~~--~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~---  176 (224)
                      ..++|++|+..+..|.+||||++++.+..  .. ..++|++++++.+|.|||+|.|.+....  ...|.|+|||++.   
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~--~~~l~~~V~d~d~~~~   82 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE--VQKLRFEVYDVDSKSK   82 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe--eeEEEEEEEEecCCcC
Confidence            45789999998888999999999987543  11 4689999999999999999999864332  3579999999997   


Q ss_pred             -CCCCceeEEEEEecCC
Q psy12137        177 -GKSNDYLGCLELCCNS  192 (224)
Q Consensus       177 -~~~~~~lG~~~l~l~~  192 (224)
                       .+++++||++.++++.
T Consensus        83 ~~~~~d~iG~~~i~l~~   99 (120)
T cd04048          83 DLSDHDFLGEAECTLGE   99 (120)
T ss_pred             CCCCCcEEEEEEEEHHH
Confidence             7889999999999886

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.64  E-value=5.9e-15  Score=104.40  Aligned_cols=91  Identities=25%  Similarity=0.337  Sum_probs=77.6

Q ss_pred             CEEEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         98 RALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      |.|.|.|++|++|+..+ ..+.+||||++++...  ....+|++++++.+|.|||.|.|.+.   .....|.|+|||++.
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~--~~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~   76 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR--RELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFND   76 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC--CcceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCC
Confidence            67899999999998654 3467899999998421  37789999999999999999999985   235789999999998


Q ss_pred             CCCCceeEEEEEecCCC
Q psy12137        177 GKSNDYLGCLELCCNSK  193 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~~  193 (224)
                      .+++++||.+.+++...
T Consensus        77 ~~~d~~iG~~~~~l~~l   93 (124)
T cd04044          77 KRKDKLIGTAEFDLSSL   93 (124)
T ss_pred             CCCCceeEEEEEEHHHh
Confidence            88899999999998863

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.63  E-value=5.8e-15  Score=105.04  Aligned_cols=104  Identities=25%  Similarity=0.399  Sum_probs=83.5

Q ss_pred             CEEEEEEEEeecCCCCC--CCCCCCcEEEEEEecCCC--CCeEeeeeeeCCC-CCeeceEEEEEeecCcccccEEEEEEE
Q psy12137         98 RALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTL-NPIFNEEFAIETKITELSKQTLVITVW  172 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~--~~g~~dpyv~~~~~~~~~--~~~~~T~~~~~~~-~p~~~e~f~f~~~~~~~~~~~l~i~v~  172 (224)
                      ..|+|.|++|++|+..+  ..+..||||++++.+...  ..+.+|+++.++. +|.|||+|.|.+...+  ...|.|+||
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~   79 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVY   79 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEE
Confidence            36899999999999887  467899999999976543  3788999987776 9999999999986332  357999999


Q ss_pred             ECCCCCCCceeEEEEEecCCCCCccchhhhhhc
Q psy12137        173 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK  205 (224)
Q Consensus       173 ~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~  205 (224)
                      +++.. ++++||++.++++....+. +|..|.+
T Consensus        80 d~~~~-~~~~iG~~~~~l~~l~~g~-~~~~l~~  110 (128)
T cd00275          80 DEDSG-DDDFLGQACLPLDSLRQGY-RHVPLLD  110 (128)
T ss_pred             eCCCC-CCcEeEEEEEEhHHhcCce-EEEEecC
Confidence            99988 8899999999998764433 3455554

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.62  E-value=7.5e-15  Score=105.73  Aligned_cols=101  Identities=17%  Similarity=0.216  Sum_probs=77.1

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      ...|.|.|++|++|+.++     ++||.+.+    ++ ...+|+++.++.+|.|+|.|.|...+.   -..|.|.||+.+
T Consensus        10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~L----d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~---~~~l~v~v~k~~   77 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK-----RYYCELCL----DKTLYARTTSKLKTDTLFWGEHFEFSNLPP---VSVITVNLYRES   77 (146)
T ss_pred             EEEEEEEEEEccCCCCcC-----CceEEEEE----CCEEEEEEEEEcCCCCCcceeeEEecCCCc---ccEEEEEEEEcc
Confidence            346789999999998754     79999999    55 557999999999999999999986432   257999998654


Q ss_pred             C-CC---CCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137        176 Y-GK---SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  221 (224)
Q Consensus       176 ~-~~---~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~  221 (224)
                      . .+   ++.+||.+.|++....            .+..+++|++|.+..
T Consensus        78 ~~~~~~~~~~~IG~V~Ip~~~l~------------~~~~ve~Wfpl~~~~  115 (146)
T cd04013          78 DKKKKKDKSQLIGTVNIPVTDVS------------SRQFVEKWYPVSTPK  115 (146)
T ss_pred             CccccccCCcEEEEEEEEHHHhc------------CCCcccEEEEeecCC
Confidence            2 22   5689999999987532            245566777766443

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.62  E-value=7.7e-15  Score=103.83  Aligned_cols=94  Identities=29%  Similarity=0.396  Sum_probs=79.8

Q ss_pred             EEEEEEEeecCCCCC--CCC--CCCcEEEEEEecCCCCCeEeeeeeeCCCC--CeeceEEEEEeec--------------
Q psy12137        100 LIVNLIKCTNLIPMD--SNG--FSDPFIKLYLKPDLHKRKYKTGVKWKTLN--PIFNEEFAIETKI--------------  159 (224)
Q Consensus       100 l~v~i~~a~~L~~~~--~~g--~~dpyv~~~~~~~~~~~~~~T~~~~~~~~--p~~~e~f~f~~~~--------------  159 (224)
                      |+|.|.+|++++..+  ..|  .+||||++.+.+. ...+++|.+++++.+  |.||+.|.|++..              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL-EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccC-cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            789999999966433  355  4999999998764 248899999999999  9999999999766              


Q ss_pred             -------CcccccEEEEEEEECCCCCCCceeEEEEEecCCCC
Q psy12137        160 -------TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG  194 (224)
Q Consensus       160 -------~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~  194 (224)
                             +.+....|.|+|||.|.++++++||.+.++++...
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~  122 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILP  122 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcc
Confidence                   45566889999999999999999999999998644

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.61  E-value=2.1e-14  Score=101.69  Aligned_cols=86  Identities=26%  Similarity=0.325  Sum_probs=73.5

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      ..|.|.|.+|+ |...+..+.+||||++++    +. ...+|++++++.+|.|||.|.|.+..    ...|.|+|||++.
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~----~~~~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~   72 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTV----DGQPPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHT   72 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEE----CCcccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCC
Confidence            46899999998 544455778999999998    33 47899999999999999999999842    3689999999999


Q ss_pred             CCCCceeEEEEEecCC
Q psy12137        177 GKSNDYLGCLELCCNS  192 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~  192 (224)
                      .+++++||++.+++..
T Consensus        73 ~~~~~~iG~~~i~l~~   88 (125)
T cd04021          73 LKADVLLGEASLDLSD   88 (125)
T ss_pred             CCCCcEEEEEEEEHHH
Confidence            8889999999999875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.60  E-value=1.2e-14  Score=95.45  Aligned_cols=85  Identities=36%  Similarity=0.588  Sum_probs=73.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      |.|.|++|+||+..+..+..+||+++.+..... ..++|++++++.+|.|+|+|.|.+.....  ..|.|+||+++..++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~-~~~~T~~~~~~~~P~w~e~~~~~~~~~~~--~~l~~~V~~~~~~~~   77 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES-TKYKTKVKKNTSNPVWNEEFEFPLDDPDL--DSLSFEVWDKDSFGK   77 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC-EEEEECCBSSBSSEEEEEEEEEEESHGCG--TEEEEEEEEETSSSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeee-eeeeeeeeeccccceeeeeeeeeeecccc--cceEEEEEECCCCCC
Confidence            689999999999888788999999999965432 67999999999999999999999755444  459999999999888


Q ss_pred             CceeEEEE
Q psy12137        180 NDYLGCLE  187 (224)
Q Consensus       180 ~~~lG~~~  187 (224)
                      +++||++.
T Consensus        78 ~~~iG~~~   85 (85)
T PF00168_consen   78 DELIGEVK   85 (85)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEEC
Confidence            99999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.59  E-value=2.4e-15  Score=104.04  Aligned_cols=60  Identities=18%  Similarity=0.319  Sum_probs=54.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceee
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCL   61 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~   61 (224)
                      +|+||+|||+|.| .|+.+++....|.|.|||+|++++ ++||++.++++++....+.+.|.
T Consensus        56 ktlnPvfnE~f~F-~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~  116 (118)
T cd08677          56 LALHTQWEEELVF-PLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWV  116 (118)
T ss_pred             CCCCCccccEEEE-eCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchh
Confidence            6999999999999 799999999999999999999999 99999999999886665555554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.55  E-value=1.2e-13  Score=123.91  Aligned_cols=104  Identities=40%  Similarity=0.509  Sum_probs=87.3

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      .|.|.|.+..|.||+..+.+|.+||||++.+.   ++..++|+++++++||.|||.|...+...  ....+.|.|+|++.
T Consensus      1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln---~k~vyktkv~KktlNPvwNEe~~i~v~~r--~~D~~~i~v~Dwd~ 1113 (1227)
T COG5038        1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLN---EKSVYKTKVVKKTLNPVWNEEFTIEVLNR--VKDVLTINVNDWDS 1113 (1227)
T ss_pred             cCcEEEEEeccCCCcccccCCCCCceEEEEec---ceecccccchhccCCCCccccceEeeecc--ccceEEEEEeeccc
Confidence            78899999999999999999999999999984   33689999999999999999999998533  24689999999999


Q ss_pred             CCCCceeEEEEEecCCCCC-ccchhhhhhc
Q psy12137        177 GKSNDYLGCLELCCNSKGD-RLRHWVDMMK  205 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~~~~-~~~~w~~l~~  205 (224)
                      ..+++.||.+.++|..... ....|.=.++
T Consensus      1114 ~~knd~lg~~~idL~~l~~~~~~n~~i~ld 1143 (1227)
T COG5038        1114 GEKNDLLGTAEIDLSKLEPGGTTNSNIPLD 1143 (1227)
T ss_pred             CCCccccccccccHhhcCcCCccceeeecc
Confidence            9999999999999997543 3334433333

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.55  E-value=2e-13  Score=122.52  Aligned_cols=90  Identities=26%  Similarity=0.340  Sum_probs=76.7

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      .|.++|.|..|.++......+.+|||+++.+.   +..+.+|-.+..+.+|.|++...-.+.  .. ...|.+.++++..
T Consensus       710 Ig~irv~v~~andl~n~i~g~~~dPya~v~~n---~~~k~rti~~~~~~npiw~~i~Yv~v~--sk-~~r~~l~~~~~~~  783 (1227)
T COG5038         710 IGAIRVSVRKANDLRNEIPGGKSDPYATVLVN---NLVKYRTIYGSSTLNPIWNEILYVPVT--SK-NQRLTLECMDYEE  783 (1227)
T ss_pred             cceEEEEeehhhcccccccCcccccceEEEec---ceeEEEEecccCccccceeeeEEEEec--CC-ccEEeeeeecchh
Confidence            77899999999999987788999999999883   237889999999999999998877763  22 2468889999998


Q ss_pred             CCCCceeEEEEEecCC
Q psy12137        177 GKSNDYLGCLELCCNS  192 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~  192 (224)
                      .+.|..+|++.+..+.
T Consensus       784 sgddr~lg~~~i~vsn  799 (1227)
T COG5038         784 SGDDRNLGEVNINVSN  799 (1227)
T ss_pred             ccccceeceeeeeeee
Confidence            8899999999999885

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.53  E-value=9.5e-14  Score=96.32  Aligned_cols=71  Identities=28%  Similarity=0.420  Sum_probs=61.4

Q ss_pred             CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137        115 SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       115 ~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~  192 (224)
                      ..|.+||||++++    +. ...+|++++++.+|.|||.|.|.+.  +.....|.|.||+++.+ ++++||.+.++|..
T Consensus         9 ~~G~~dPYv~v~v----~~~~~~kT~v~~~t~nP~Wne~f~f~v~--~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~   80 (111)
T cd04052           9 KTGLLSPYAELYL----NGKLVYTTRVKKKTNNPSWNASTEFLVT--DRRKSRVTVVVKDDRDR-HDPVLGSVSISLND   80 (111)
T ss_pred             cCCCCCceEEEEE----CCEEEEEEeeeccCCCCccCCceEEEec--CcCCCEEEEEEEECCCC-CCCeEEEEEecHHH
Confidence            4688999999999    34 5679999999999999999999984  33456899999999988 89999999999875

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.51  E-value=6.9e-14  Score=98.03  Aligned_cols=76  Identities=14%  Similarity=0.256  Sum_probs=58.5

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecc-ccCCCcccceeecccccccCCCcccccCcc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN-RLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~-~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      ++||+|||+|.| .+...   ...|.|+|||.|.+++ ++||++.|+|. .+......+.|++|.+      .      .
T Consensus        44 ~~nP~WNe~F~f-~v~~~---~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~------~------~  107 (121)
T cd04016          44 AKNPRWNKTIQC-TLPEG---VDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSG------K------Q  107 (121)
T ss_pred             CCCCccCeEEEE-EecCC---CcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcC------c------c
Confidence            689999999999 56543   4679999999999998 99999999996 4555544555555543      1      1


Q ss_pred             cceeceEEEEEEEE
Q psy12137         80 ECWQHGKIFLTLCF   93 (224)
Q Consensus        80 ~~~~~g~l~i~~~~   93 (224)
                      .....|+|++++.|
T Consensus       108 ~~~~~g~i~l~l~y  121 (121)
T cd04016         108 GEDKEGMINLVFSY  121 (121)
T ss_pred             CCCCceEEEEEEeC
Confidence            12577999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>PLN03008 Phospholipase D delta

Probab=99.50  E-value=1.8e-13  Score=120.58  Aligned_cols=84  Identities=20%  Similarity=0.326  Sum_probs=66.2

Q ss_pred             CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCC--C
Q psy12137        117 GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--G  194 (224)
Q Consensus       117 g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~--~  194 (224)
                      +++||||++.+.   +.+..+|++++++.||+|||+|.|.+..  . ...|.|+|||++.++ +++||++.|++...  |
T Consensus        75 ~tSDPYV~I~Lg---~~rv~RTrVi~n~~NPvWNE~F~f~vah--~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~G  147 (868)
T PLN03008         75 ITSDPYVTVVVP---QATLARTRVLKNSQEPLWDEKFNISIAH--P-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASG  147 (868)
T ss_pred             CCCCceEEEEEC---CcceeeEEeCCCCCCCCcceeEEEEecC--C-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCC
Confidence            467999999992   2356799999999999999999999864  2 368999999999997 58999999999863  3


Q ss_pred             CccchhhhhhcCC
Q psy12137        195 DRLRHWVDMMKYP  207 (224)
Q Consensus       195 ~~~~~w~~l~~~~  207 (224)
                      ...+.|++++..-
T Consensus       148 e~vd~Wl~Ll~~~  160 (868)
T PLN03008        148 ERISGWFPVLGAS  160 (868)
T ss_pred             CceEEEEEccccC
Confidence            4444555555433

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.47  E-value=1.3e-13  Score=96.48  Aligned_cols=65  Identities=22%  Similarity=0.254  Sum_probs=55.5

Q ss_pred             CCCCCeeccEEEECccCcc-ccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccccc
Q psy12137          1 RTINPEFHEKLTFYSVSET-DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKH   66 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~-~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~   66 (224)
                      +|+||+|||+|.| .++.+ ++....|+|.|||+|..++ ++||++.++|.++........|++|.+.
T Consensus        47 ~tlnPvwNE~f~F-~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          47 NNWSPKYNETFQF-ILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             CCCCCccCcEEEE-EeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            5899999999999 66643 5666789999999997777 8999999999999988888888888653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>KOG1328|consensus

Probab=99.46  E-value=4.1e-14  Score=121.18  Aligned_cols=111  Identities=34%  Similarity=0.539  Sum_probs=101.3

Q ss_pred             eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC---CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137         82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKWKTLNPIFNEEFAIETK  158 (224)
Q Consensus        82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~---~~~~T~~~~~~~~p~~~e~f~f~~~  158 (224)
                      ...|.+.+.+.|......|.|.|+.|+++.+.|.+|.+||||.+.+.+....   ..++|.++.+++||+|+|+|.|.++
T Consensus       931 ~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp 1010 (1103)
T KOG1328|consen  931 HQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVP 1010 (1103)
T ss_pred             CcCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecC
Confidence            5668899999999999999999999999999999999999999999876533   5789999999999999999999998


Q ss_pred             cCccc--ccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137        159 ITELS--KQTLVITVWDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       159 ~~~~~--~~~l~i~v~~~~~~~~~~~lG~~~l~l~~  192 (224)
                      ++...  .+.|.|+|+|+|..+.++|-|++.+.|+.
T Consensus      1011 ~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~ 1046 (1103)
T KOG1328|consen 1011 PEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGD 1046 (1103)
T ss_pred             ccccccccceEEEEeeccceecccccchHHHHhhCC
Confidence            87766  57899999999999999999999999985

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.45  E-value=3.5e-13  Score=128.64  Aligned_cols=100  Identities=21%  Similarity=0.179  Sum_probs=80.7

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      .|.|.|+|++|.||.  +..|.+||||++.+    ++ .++||++++++.||.|||.|+|.+... ..+..|.|+|||+|
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~----g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p-~~~~~l~iev~d~d 2051 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTL----GNGPPRQTKVVSHSSSPEWKEGFTWAFDSP-PKGQKLHISCKSKN 2051 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEE----CCCCcccccccCCCCCCCcccceeeeecCC-CCCCceEEEEEecC
Confidence            789999999999997  45689999999999    54 588999999999999999999887422 22357999999999


Q ss_pred             CCCCCceeEEEEEecCCC--CCccchhhhhh
Q psy12137        176 YGKSNDYLGCLELCCNSK--GDRLRHWVDMM  204 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~~--~~~~~~w~~l~  204 (224)
                      .+++ +.||.+.+++...  +..+..||.+.
T Consensus      2052 ~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~ 2081 (2102)
T PLN03200       2052 TFGK-SSLGKVTIQIDRVVMEGTYSGEYSLN 2081 (2102)
T ss_pred             ccCC-CCCceEEEEHHHHhcCceeeeeeecC
Confidence            9954 5999999999862  33444455554

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.44  E-value=6.1e-13  Score=93.73  Aligned_cols=79  Identities=28%  Similarity=0.392  Sum_probs=64.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.| .+..  + .+.|.|+|||++..++ ++||++.++++++......+.|++|.+.            .
T Consensus        42 ~t~nP~Wne~f~f-~v~~--~-~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~------------~  105 (121)
T cd04042          42 KNLNPVWDEKFTL-PIED--V-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDP------------N  105 (121)
T ss_pred             CCCCCccceeEEE-EecC--C-CCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCC------------C
Confidence            5899999999999 4543  3 5789999999999988 9999999999999877777777777542            1


Q ss_pred             cceeceEEEEEEEEeC
Q psy12137         80 ECWQHGKIFLTLCFST   95 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~~   95 (224)
                      .....|+|.+.+.|.+
T Consensus       106 ~~~~~G~l~l~~~~~~  121 (121)
T cd04042         106 SDEDLGYISLVVTLTP  121 (121)
T ss_pred             CccCceEEEEEEEECC
Confidence            1267899999998753

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.43  E-value=6.6e-13  Score=93.44  Aligned_cols=78  Identities=21%  Similarity=0.355  Sum_probs=61.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.| .++..   ...|.|.|||.+.+++ ++||++.++++++........|++|++..           .
T Consensus        43 kt~~P~WnE~F~f-~v~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----------~  107 (121)
T cd08401          43 KSLCPFFGEDFYF-EIPRT---FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVD-----------A  107 (121)
T ss_pred             CCCCCccCCeEEE-EcCCC---CCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccC-----------C
Confidence            5899999999999 57654   4699999999999988 99999999999997666666666665421           0


Q ss_pred             cceeceEEEEEEEE
Q psy12137         80 ECWQHGKIFLTLCF   93 (224)
Q Consensus        80 ~~~~~g~l~i~~~~   93 (224)
                      .....|+|++++.+
T Consensus       108 ~~~~~G~i~l~~~~  121 (121)
T cd08401         108 DSEVQGKVHLELRL  121 (121)
T ss_pred             CCcccEEEEEEEEC
Confidence            12358999988753

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.43  E-value=7e-13  Score=94.08  Aligned_cols=80  Identities=23%  Similarity=0.399  Sum_probs=59.1

Q ss_pred             CCCCCeeccEEEECccCc---cccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC--CcccceeecccccccCCCccc
Q psy12137          1 RTINPEFHEKLTFYSVSE---TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP--HISRDLCLNLCKHYPVPREEE   74 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~---~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~--~~~~~~~~~l~~~~~l~~~~~   74 (224)
                      +|+||+|||+|.| .++.   ++.....|.|.|||++.+++ ++||++.|+|+++..  ......|++|..      .. 
T Consensus        40 ~t~nP~Wne~f~F-~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~------~~-  111 (126)
T cd08682          40 KTTSPVWKEECSF-ELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES------KP-  111 (126)
T ss_pred             CCCCCEeCceEEE-EecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcC------CC-
Confidence            5799999999999 5655   34567899999999999988 999999999999863  333444444432      11 


Q ss_pred             ccCcccceeceEEEEEE
Q psy12137         75 VWGEEECWQHGKIFLTL   91 (224)
Q Consensus        75 ~~~~~~~~~~g~l~i~~   91 (224)
                         .......|+|++++
T Consensus       112 ---~~~~~~~Gei~l~~  125 (126)
T cd08682         112 ---GKDDKERGEIEVDI  125 (126)
T ss_pred             ---CCCccccceEEEEe
Confidence               11235789998876

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.42  E-value=4.3e-12  Score=85.57  Aligned_cols=92  Identities=38%  Similarity=0.506  Sum_probs=76.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      +.+.|++|++|......+..+|||++++.... ....+|+...++.+|.|||.|.|.+....  ...|.|+||+.+..++
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~~   78 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP-KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFGR   78 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc-cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCccC
Confidence            67899999999887665678999999985332 25789999998889999999999985432  5799999999988777


Q ss_pred             CceeEEEEEecCCCC
Q psy12137        180 NDYLGCLELCCNSKG  194 (224)
Q Consensus       180 ~~~lG~~~l~l~~~~  194 (224)
                      +.++|.+.+++....
T Consensus        79 ~~~~G~~~~~l~~~~   93 (101)
T smart00239       79 DDFIGQVTIPLSDLL   93 (101)
T ss_pred             CceeEEEEEEHHHcc
Confidence            899999999987644

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.42  E-value=4e-13  Score=95.15  Aligned_cols=62  Identities=29%  Similarity=0.480  Sum_probs=54.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +|+||+|||+|.| .++.+++....|.|.|||++.+++ ++||++.++|+++..+.....|.+|
T Consensus        62 ~t~nP~~nE~f~f-~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  124 (125)
T cd08393          62 KTLNPVFNETLRY-KVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL  124 (125)
T ss_pred             CCCCCccCceEEE-ECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence            5899999999999 688888888999999999999998 9999999999999766655555544

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.40  E-value=3.7e-13  Score=86.05  Aligned_cols=100  Identities=21%  Similarity=0.317  Sum_probs=81.8

Q ss_pred             EEEEEEeecCCCCCCCC-CCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        101 IVNLIKCTNLIPMDSNG-FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       101 ~v~i~~a~~L~~~~~~g-~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      -++++++++|......| .+..|++.-+.-+ +-..+||++++++.||+|+|+|+|.+...+++.-.|.|.|+.  .+.+
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~-kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R   78 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP-KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR   78 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecC-CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence            47889999997765543 4456777655321 237899999999999999999999988899999999999998  4457


Q ss_pred             CceeEEEEEecCCCC-Cccchhhhh
Q psy12137        180 NDYLGCLELCCNSKG-DRLRHWVDM  203 (224)
Q Consensus       180 ~~~lG~~~l~l~~~~-~~~~~w~~l  203 (224)
                      ++.||.+.+++++.| ++..||.++
T Consensus        79 Ke~iG~~sL~l~s~geeE~~HW~e~  103 (103)
T cd08684          79 KRTIGECSLSLRTLSTQETDHWLEI  103 (103)
T ss_pred             cceeeEEEeecccCCHHHhhhhhcC
Confidence            889999999999988 788999763

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.40  E-value=5.5e-13  Score=93.99  Aligned_cols=63  Identities=29%  Similarity=0.458  Sum_probs=53.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +|+||+|||+|.|..++.+++....|+|.|||+|.+++ ++||++.++|+++........|++|
T Consensus        58 ~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          58 KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            58999999999994337788888999999999999998 9999999999999866555555443

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd00030 C2 C2 domain

Probab=99.39  E-value=6.5e-12  Score=84.43  Aligned_cols=89  Identities=40%  Similarity=0.600  Sum_probs=75.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      |.|.|++|+++......+..+|||.+.+..   ....+|++..++.+|.|++.|.|.+...  ....|.|+||+.+..+.
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~---~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~   75 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG---KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSK   75 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc---CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCCC
Confidence            468999999998766667899999999842   3788999999999999999999998542  34689999999988777


Q ss_pred             CceeEEEEEecCCC
Q psy12137        180 NDYLGCLELCCNSK  193 (224)
Q Consensus       180 ~~~lG~~~l~l~~~  193 (224)
                      +.+||++.+++...
T Consensus        76 ~~~ig~~~~~l~~l   89 (102)
T cd00030          76 DDFLGEVEIPLSEL   89 (102)
T ss_pred             CceeEEEEEeHHHh
Confidence            88999999998764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.39  E-value=8.3e-13  Score=93.37  Aligned_cols=63  Identities=25%  Similarity=0.385  Sum_probs=56.0

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      ++||+|||+|.|..++.+++....|+|.|||++.+++ ++||++.|+|+++........|++|+
T Consensus        60 ~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          60 GPNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             CCCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            4899999999995588899999999999999999998 99999999999998777777777664

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.39  E-value=2.5e-12  Score=91.22  Aligned_cols=82  Identities=28%  Similarity=0.326  Sum_probs=64.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.| .+...   ...|.|+|||++..++ ++||++.+++.++........|+++....          ..
T Consensus        40 ~t~nP~Wne~f~f-~~~~~---~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~----------~~  105 (126)
T cd08678          40 NTSNPFWDEHFLF-ELSPN---SKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRP----------YE  105 (126)
T ss_pred             cCCCCccCceEEE-EeCCC---CCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCC----------CC
Confidence            5799999999999 56543   6789999999999988 99999999999998766665566664310          01


Q ss_pred             cceeceEEEEEEEEeCC
Q psy12137         80 ECWQHGKIFLTLCFSTK   96 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~~~   96 (224)
                      .....|+|.+.+.|...
T Consensus       106 ~~~~~G~l~l~~~~~~~  122 (126)
T cd08678         106 GDSVSGSITVEFLFMEP  122 (126)
T ss_pred             CCCcceEEEEEEEEecc
Confidence            23679999999999764

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.39  E-value=1.6e-12  Score=93.07  Aligned_cols=85  Identities=25%  Similarity=0.449  Sum_probs=64.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.| .+...   ...|.|.|||++.+++ ++||++.+++.++......+.......|++|++...     
T Consensus        48 ~t~nP~Wne~f~f-~~~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~-----  118 (133)
T cd04033          48 KTLNPKWNEEFFF-RVNPR---EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS-----  118 (133)
T ss_pred             CCCCCcEeeEEEE-EEcCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCC-----
Confidence            5899999999999 56543   4689999999999988 999999999999976644332223445676653211     


Q ss_pred             cceeceEEEEEEEEe
Q psy12137         80 ECWQHGKIFLTLCFS   94 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~   94 (224)
                      .....|+|++++.|.
T Consensus       119 ~~~~~G~l~~~~~~~  133 (133)
T cd04033         119 KSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCcceeEEEEEEeeC
Confidence            135799999999873

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.39  E-value=7.8e-13  Score=93.62  Aligned_cols=62  Identities=34%  Similarity=0.662  Sum_probs=54.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +++||+|||+|.| .++.+++....|.|.|||++.+++ ++||++.++|.++........|++|
T Consensus        62 ~t~nP~wnE~f~f-~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          62 NTTNPVYNETLKY-SISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             CCCCCcccceEEE-ECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            5799999999999 688888888899999999999998 9999999999999877766666554

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.39  E-value=3.1e-12  Score=90.74  Aligned_cols=82  Identities=18%  Similarity=0.212  Sum_probs=62.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +++||.|||+|.|. +...+  ...|.|.|||.+..++ ++||++.++|+++......+.|+++.+..          ..
T Consensus        42 ~~~nP~WnE~f~f~-~~~~~--~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----------~~  108 (126)
T cd08400          42 EGPNPVWSEEFVFD-DLPPD--VNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSAS----------PL  108 (126)
T ss_pred             CCCCCccCCEEEEe-cCCCC--cCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCC----------CC
Confidence            47899999999994 43332  2578999999999988 99999999999997766555555554421          01


Q ss_pred             cceeceEEEEEEEEeC
Q psy12137         80 ECWQHGKIFLTLCFST   95 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~~   95 (224)
                      .....|+|++++.|..
T Consensus       109 ~~~~~G~i~l~l~~~~  124 (126)
T cd08400         109 KGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCCcCcEEEEEEEEEc
Confidence            2367899999999975

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.38  E-value=2e-12  Score=93.79  Aligned_cols=64  Identities=33%  Similarity=0.412  Sum_probs=51.6

Q ss_pred             CCCCCeeccEEEECcc-------------CccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC-cccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSV-------------SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH-ISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v-------------~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~-~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.| .+             +.+++....|.|.|||++..++ ++||++.|+|..+... .....|++|.+
T Consensus        44 ~t~nP~wNE~F~F-~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~  122 (148)
T cd04010          44 KTNNPQFDEAFYF-DVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP  122 (148)
T ss_pred             CCCCCccceEEEE-EEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence            5899999999999 45             3445656789999999998888 9999999999999765 44555666554

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.37  E-value=2.6e-12  Score=91.26  Aligned_cols=81  Identities=30%  Similarity=0.395  Sum_probs=60.0

Q ss_pred             CCCCCeeccEEEECccC-ccccccCeEEEEEEeCCCCC-C-ccceeEEeeccccCC-CcccceeecccccccCCCccccc
Q psy12137          1 RTINPEFHEKLTFYSVS-ETDLSLQSLHILVLDDDKYG-H-DFLGEARFPLNRLRP-HISRDLCLNLCKHYPVPREEEVW   76 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~-~~~~~~~~l~i~v~d~d~~~-~-~~lG~~~i~l~~~~~-~~~~~~~~~l~~~~~l~~~~~~~   76 (224)
                      +++||+|||+|.| .+. ...+....|.|.|||.+.++ + ++||++.++++++.. ......|++|+..          
T Consensus        41 ~t~nP~Wne~f~f-~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~----------  109 (127)
T cd04022          41 KDLNPVWNEKLVF-NVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR----------  109 (127)
T ss_pred             CCCCCccceEEEE-EccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC----------
Confidence            5899999999999 454 34445678999999999886 6 999999999999973 3444455555431          


Q ss_pred             CcccceeceEEEEEEEE
Q psy12137         77 GEEECWQHGKIFLTLCF   93 (224)
Q Consensus        77 ~~~~~~~~g~l~i~~~~   93 (224)
                       ......+|+|.+++.+
T Consensus       110 -~~~~~~~G~l~l~~~~  125 (127)
T cd04022         110 -GLFSRVRGEIGLKVYI  125 (127)
T ss_pred             -CCCCCccEEEEEEEEE
Confidence             1112468999998875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>KOG1011|consensus

Probab=99.37  E-value=7.9e-13  Score=112.43  Aligned_cols=106  Identities=27%  Similarity=0.523  Sum_probs=92.7

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      ...++++|+.|.+|...+..|.+||||.+.+    ++.+++|+.+...+||+|||.|.|....   ....|++.|||.|.
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv----~ktkrrtrti~~~lnpvw~ekfhfechn---stdrikvrvwded~  366 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQV----GKTKRRTRTIHQELNPVWNEKFHFECHN---STDRIKVRVWDEDN  366 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEee----cccchhhHhhhhccchhhhhheeeeecC---CCceeEEEEecCcc
Confidence            5689999999999999999999999999998    7889999999999999999999999742   24689999999773


Q ss_pred             C-----------CCCceeEEEEEecCCCCCccchhhhhhcCCCc
Q psy12137        177 G-----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH  209 (224)
Q Consensus       177 ~-----------~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~  209 (224)
                      -           .+|+|+|+..|.+...+.+.+-||.|-..-++
T Consensus       367 dlksklrqkl~resddflgqtvievrtlsgemdvwynlekrtdk  410 (1283)
T KOG1011|consen  367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDK  410 (1283)
T ss_pred             cHHHHHHHHhhhcccccccceeEEEEecccchhhhcchhhccch
Confidence            2           56889999999999988889999999765543

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.37  E-value=5.1e-12  Score=89.77  Aligned_cols=84  Identities=20%  Similarity=0.285  Sum_probs=65.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +++||+|||+|.| .+.......+.|.|+|||++..++ ++||++.++|+++........|.+|.+.            .
T Consensus        35 ~~~nP~Wne~f~f-~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~------------~  101 (127)
T cd08373          35 NELNPVWNETFEW-PLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDS------------N  101 (127)
T ss_pred             CCcCCcccceEEE-EeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCC------------C
Confidence            5789999999999 454332357899999999999888 9999999999999877766666666431            1


Q ss_pred             cceeceEEEEEEEEeCCC
Q psy12137         80 ECWQHGKIFLTLCFSTKK   97 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~~~~   97 (224)
                      .....|+|.+.+.|.+..
T Consensus       102 ~~~~~~~l~l~~~~~~~~  119 (127)
T cd08373         102 GRPTGATISLEVSYQPPD  119 (127)
T ss_pred             CCcccEEEEEEEEEeCCC
Confidence            124568999999998753

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.36  E-value=3.5e-12  Score=89.57  Aligned_cols=74  Identities=20%  Similarity=0.368  Sum_probs=60.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.| .+...  ....|.|+|||.|.. + ++||++.+++.++........|+++.+              
T Consensus        44 ~t~nP~Wne~f~f-~i~~~--~~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g~~~~~~~~L~~--------------  105 (119)
T cd04036          44 NSINPVWNETFEF-RIQSQ--VKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSLNP--------------  105 (119)
T ss_pred             CCCCCccceEEEE-EeCcc--cCCEEEEEEEECCCC-CCcccEEEEEEHHHCCCCCcEEEEEECCC--------------
Confidence            5789999999999 56544  356799999999988 7 999999999999987777777777743              


Q ss_pred             cceeceEEEEEEEEe
Q psy12137         80 ECWQHGKIFLTLCFS   94 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~   94 (224)
                        ...|+|.+.+..+
T Consensus       106 --~~~g~l~~~~~~~  118 (119)
T cd04036         106 --QGKEELEVEFLLE  118 (119)
T ss_pred             --CCCceEEEEEEee
Confidence              4578888877653

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.36  E-value=3.6e-12  Score=89.07  Aligned_cols=74  Identities=27%  Similarity=0.463  Sum_probs=60.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||.|||+|.| .+...  ..+.|.|.|||++..++ ++||++.++|+++........|++|.+              
T Consensus        41 ~t~nP~Wne~f~f-~~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~--------------  103 (116)
T cd08376          41 KTLNPQWLEQFDL-HLFDD--QSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELED--------------  103 (116)
T ss_pred             CCCCCceeEEEEE-EecCC--CCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccC--------------
Confidence            5899999999999 45432  46799999999999888 999999999999987777777777743              


Q ss_pred             cceeceEEEEEEEEe
Q psy12137         80 ECWQHGKIFLTLCFS   94 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~   94 (224)
                         ..|+|++.+.|.
T Consensus       104 ---~~G~~~~~~~~~  115 (116)
T cd08376         104 ---GEGSLLLLLTLT  115 (116)
T ss_pred             ---CCcEEEEEEEec
Confidence               259998888763

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.35  E-value=1.5e-12  Score=91.81  Aligned_cols=54  Identities=22%  Similarity=0.297  Sum_probs=50.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~   55 (224)
                      +++||+|||+|.| .|+.+++....|+|.|||++++++ ++||++.|+|+++....
T Consensus        61 ~t~nPvfnE~F~f-~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~  115 (124)
T cd08680          61 DQDKPVFNEVFRV-PISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSE  115 (124)
T ss_pred             CCCCCccccEEEE-ECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCC
Confidence            5899999999999 699999999999999999999988 99999999999996554

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>KOG0905|consensus

Probab=99.35  E-value=1.6e-12  Score=116.48  Aligned_cols=111  Identities=26%  Similarity=0.360  Sum_probs=99.5

Q ss_pred             eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEE-eec
Q psy12137         82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKI  159 (224)
Q Consensus        82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~-~~~  159 (224)
                      +..|+|.++++|.  .++|.|.|..+++|+-...+..+||||+.++.++..+ .++||++.+++.+|.|||..++. ++.
T Consensus      1510 ~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~ 1587 (1639)
T KOG0905|consen 1510 EIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPK 1587 (1639)
T ss_pred             ccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCch
Confidence            4567999999997  8999999999999987777778999999999998867 78899999999999999999998 776


Q ss_pred             CcccccEEEEEEEECCCCCCCceeEEEEEecCCCC
Q psy12137        160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG  194 (224)
Q Consensus       160 ~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~  194 (224)
                      +.+.+..|.++||..+....+.++|.+.|+|....
T Consensus      1588 ~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~ 1622 (1639)
T KOG0905|consen 1588 EILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVD 1622 (1639)
T ss_pred             hhhhhheeeeeeecccceeeeeeeeeeecchhhcc
Confidence            77778899999999998888999999999998644

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.35  E-value=5.4e-12  Score=88.80  Aligned_cols=83  Identities=28%  Similarity=0.440  Sum_probs=58.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE   80 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~   80 (224)
                      +|+||+|||+|.|. +  .++....|.|.|||++..+.++||++.++|+++....... ......|+.|....      .
T Consensus        37 ~t~nP~Wne~F~f~-~--~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~-~~~~~~W~~L~~~~------~  106 (121)
T cd08378          37 RTSNPEWNQVFAFS-K--DRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPD-SPLAPQWYRLEDKK------G  106 (121)
T ss_pred             CCCCCccceEEEEE-c--CCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCC-CCCCcceEEccCCC------C
Confidence            58999999999995 3  3445789999999999773399999999999996432110 00123455554321      1


Q ss_pred             ceeceEEEEEEEE
Q psy12137         81 CWQHGKIFLTLCF   93 (224)
Q Consensus        81 ~~~~g~l~i~~~~   93 (224)
                      ...+|+|++++.|
T Consensus       107 ~~~~G~i~l~~~~  119 (121)
T cd08378         107 GRVGGELMLAVWF  119 (121)
T ss_pred             CccceEEEEEEEe
Confidence            3678999998875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.35  E-value=2e-12  Score=91.75  Aligned_cols=54  Identities=31%  Similarity=0.425  Sum_probs=49.3

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~   55 (224)
                      +|+||+|||+|.| .++.+++....|.|.|||++.+++ ++||++.|+|+++....
T Consensus        62 ~t~nPvfNE~F~f-~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~  116 (128)
T cd08392          62 GTVNPVFNETLKY-VVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFED  116 (128)
T ss_pred             CCCCCccceEEEE-EcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCC
Confidence            5799999999999 698988988999999999999888 99999999999996554

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.34  E-value=2.7e-12  Score=91.22  Aligned_cols=64  Identities=31%  Similarity=0.437  Sum_probs=54.3

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC--cccceeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH--ISRDLCLNLC   64 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~--~~~~~~~~l~   64 (224)
                      +|+||+|||+|.|..++..++....|+|.|||+|.+++ ++||++.++|+++...  ....+|+++.
T Consensus        61 ~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          61 KTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             CCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            58999999999996577788877899999999999988 9999999999999655  4566666653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.33  E-value=9.1e-12  Score=90.78  Aligned_cols=94  Identities=21%  Similarity=0.279  Sum_probs=63.8

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccc-cCcc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV-WGEE   79 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~   79 (224)
                      |+||+|||+|.|. ++  +...+.|.|.|||++..++ ++||++.++|.++......  ......|++|.+.... .+..
T Consensus        43 t~nP~WNE~F~f~-v~--~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~--~~~~~~W~~L~~~~~~~~~~k  117 (150)
T cd04019          43 NGNPSWNEELMFV-AA--EPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDD--RPVPSRWFSLERPGGAMEQKK  117 (150)
T ss_pred             CCCCcccCcEEEE-ec--CccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCC--CccCCceEECcCCCCcccccc
Confidence            6999999999994 53  3335789999999998878 9999999999998643110  0123445555433210 0112


Q ss_pred             cceeceEEEEEEEEeCCCCEE
Q psy12137         80 ECWQHGKIFLTLCFSTKKRAL  100 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~~~~~~l  100 (224)
                      .....|+|++.+.|.....++
T Consensus       118 ~~k~~g~l~l~i~~~~~~~~~  138 (150)
T cd04019         118 KRKFASRIHLRLCLDGGYHVL  138 (150)
T ss_pred             cCcccccEEEEEEecCcceEe
Confidence            235689999999998654443

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.31  E-value=7.4e-12  Score=87.74  Aligned_cols=75  Identities=28%  Similarity=0.438  Sum_probs=57.4

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCcccc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEEC   81 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~   81 (224)
                      ++||+|||+|.| .++..  ..+.|.|+|||++..+.++||++.++++++........|+++..      .        .
T Consensus        44 ~~nP~Wne~f~f-~v~~~--~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~--------~  106 (118)
T cd08681          44 GQHPEWDEELRF-EITED--KKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL------K--------G  106 (118)
T ss_pred             CCCCccCceEEE-EecCC--CCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc------C--------C
Confidence            689999999999 56553  35789999999987655899999999999865544444444432      1        2


Q ss_pred             eeceEEEEEEEE
Q psy12137         82 WQHGKIFLTLCF   93 (224)
Q Consensus        82 ~~~g~l~i~~~~   93 (224)
                      ...|+|.+.+.|
T Consensus       107 ~~~G~i~l~l~f  118 (118)
T cd08681         107 RYAGEVYLELTF  118 (118)
T ss_pred             cEeeEEEEEEEC
Confidence            578999998875

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.31  E-value=4.1e-12  Score=89.88  Aligned_cols=62  Identities=29%  Similarity=0.577  Sum_probs=54.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +|+||+|||+|.| .++..++....|.|.|||++.+++ ++||++.++|+++........|++|
T Consensus        60 ~t~~P~wne~f~f-~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08387          60 KTLNPEFDESFVF-EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI  122 (124)
T ss_pred             CCCCCCcccEEEE-eCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence            5899999999999 688888878899999999999988 9999999999999877666666655

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.31  E-value=9.4e-12  Score=89.30  Aligned_cols=79  Identities=24%  Similarity=0.434  Sum_probs=56.6

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||.|||+|.|. +.  ++....|.|+|||.+.+++ ++||++.++|.++....... ..++..+..+          
T Consensus        56 ~t~nP~Wne~f~f~-v~--~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~~~~~~~----------  121 (136)
T cd08375          56 DTLNPKWNSSMQFF-VK--DLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKES-KGPITKRLLL----------  121 (136)
T ss_pred             CCCCCccCceEEEE-ec--CccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccC-CCcEEEEecc----------
Confidence            58999999999994 53  3446789999999999888 99999999999996521110 0112222222          


Q ss_pred             cceeceEEEEEEEE
Q psy12137         80 ECWQHGKIFLTLCF   93 (224)
Q Consensus        80 ~~~~~g~l~i~~~~   93 (224)
                      +....|+|++.+.+
T Consensus       122 ~~~~~g~i~l~~~~  135 (136)
T cd08375         122 HEVPTGEVVVKLDL  135 (136)
T ss_pred             ccccceeEEEEEEe
Confidence            24678999998875

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>PLN02223 phosphoinositide phospholipase C

Probab=99.30  E-value=2.8e-11  Score=102.82  Aligned_cols=109  Identities=17%  Similarity=0.239  Sum_probs=82.6

Q ss_pred             CEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEE
Q psy12137         98 RALIVNLIKCTNLIPM-----DSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV  171 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~-----~~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v  171 (224)
                      ..|.|+|+.|.+++..     +.....||||+|.+.+-.. ...++|.+..++.||+|||+|.|.+...++  +.|.|+|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL--AlLrf~V  486 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL--ALISFEV  486 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc--eEEEEEE
Confidence            4689999999987521     1224579999999864222 256778887788999999999999855444  4899999


Q ss_pred             EECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCc
Q psy12137        172 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH  209 (224)
Q Consensus       172 ~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~  209 (224)
                      +|+|..++++++|+..+++.+...+++|- .|.+..+.
T Consensus       487 ~D~D~~~~ddfiGQ~~LPv~~Lr~GyR~V-pL~~~~g~  523 (537)
T PLN02223        487 YDYEVSTADAFCGQTCLPVSELIEGIRAV-PLYDERGK  523 (537)
T ss_pred             EecCCCCCCcEEEEEecchHHhcCCceeE-eccCCCcC
Confidence            99998888999999999999877776443 45444443

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.30  E-value=1.5e-11  Score=86.87  Aligned_cols=81  Identities=23%  Similarity=0.318  Sum_probs=59.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.|. +...  ....|.|.|||++..++ ++||++.++|+++........|+.+.+....       ...
T Consensus        41 ~t~nP~Wne~f~f~-~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-------~~~  110 (123)
T cd04025          41 KSCYPRWNEVFEFE-LMEG--ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-------EEE  110 (123)
T ss_pred             CCCCCccCcEEEEE-cCCC--CCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCC-------Ccc
Confidence            58999999999994 5443  25789999999999988 9999999999999766555556655442111       122


Q ss_pred             cceeceEEEEEE
Q psy12137         80 ECWQHGKIFLTL   91 (224)
Q Consensus        80 ~~~~~g~l~i~~   91 (224)
                      .....|.|++.+
T Consensus       111 ~~~~~G~l~~~~  122 (123)
T cd04025         111 SGGNLGSLRLKV  122 (123)
T ss_pred             ccCceEEEEEEe
Confidence            346788887765

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.30  E-value=6e-12  Score=89.00  Aligned_cols=63  Identities=32%  Similarity=0.509  Sum_probs=54.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      +++||+|||+|.| .++..++....|.|.|||++.+++ ++||++.++|+++........|.+|+
T Consensus        60 ~t~nP~wne~f~f-~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          60 KTLNPVFNETFTF-KVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCCceeeeEEE-eCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            5799999999999 687777777899999999999988 99999999999997766666666653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.29  E-value=1e-11  Score=86.04  Aligned_cols=75  Identities=24%  Similarity=0.361  Sum_probs=57.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC-cccceeecccccccCCCcccccCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH-ISRDLCLNLCKHYPVPREEEVWGE   78 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~-~~~~~~~~l~~~~~l~~~~~~~~~   78 (224)
                      ++.||+|||+|.|. +.  +...+.|.|.|||.+.+ + ++||++.++|+++... .....|++|..             
T Consensus        34 ~t~nP~Wne~f~f~-v~--~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~-------------   96 (111)
T cd04052          34 KTNNPSWNASTEFL-VT--DRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVGQQWFPLSG-------------   96 (111)
T ss_pred             cCCCCccCCceEEE-ec--CcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhccceeEECCC-------------
Confidence            57899999999994 43  33467899999999988 7 9999999999999543 22334444421             


Q ss_pred             ccceeceEEEEEEEEeC
Q psy12137         79 EECWQHGKIFLTLCFST   95 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~~~   95 (224)
                         ...|+|++++.|.+
T Consensus        97 ---~~~G~i~~~~~~~p  110 (111)
T cd04052          97 ---NGQGRIRISALWKP  110 (111)
T ss_pred             ---CCCCEEEEEEEEec
Confidence               35799999998865

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.28  E-value=9.3e-12  Score=89.92  Aligned_cols=61  Identities=25%  Similarity=0.367  Sum_probs=50.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEE-eCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVL-DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~-d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.| .++   +....|.|.|| |++.+.+ ++||++.|+|..+........|.+|.+
T Consensus        76 ktlnPvfNE~F~f-~v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~  138 (146)
T cd04028          76 KTLDPLYQQQLVF-DVS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFP  138 (146)
T ss_pred             CCCCCccCCeEEE-EEc---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence            6899999999999 566   56889999999 6887888 999999999999976665555555544

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.28  E-value=2e-11  Score=88.87  Aligned_cols=80  Identities=18%  Similarity=0.280  Sum_probs=62.5

Q ss_pred             CCCCCeeccEEEECccCcc------ccccCeEEEEEEeCCCCC-C-ccceeEEeeccccCCCcccceeecccccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSET------DLSLQSLHILVLDDDKYG-H-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPRE   72 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~------~~~~~~l~i~v~d~d~~~-~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~   72 (224)
                      +|+||+|||+|.| .|+..      .+....|.|+|||++.+. + ++||++.++|+.+........++++.+.      
T Consensus        50 ~TlnPvfNE~f~f-~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~------  122 (155)
T cd08690          50 DTNSPEYNESFKL-NINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG------  122 (155)
T ss_pred             CCCCCcccceEEE-EeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC------
Confidence            5899999999999 57655      356778999999999874 5 9999999999999777666656666431      


Q ss_pred             ccccCcccceeceEEEEEEEEe
Q psy12137         73 EEVWGEEECWQHGKIFLTLCFS   94 (224)
Q Consensus        73 ~~~~~~~~~~~~g~l~i~~~~~   94 (224)
                             .....|+|++++..-
T Consensus       123 -------~k~~Gg~l~v~ir~r  137 (155)
T cd08690         123 -------RKATGGKLEVKVRLR  137 (155)
T ss_pred             -------CCCcCCEEEEEEEec
Confidence                   236778888877643

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.28  E-value=9.6e-12  Score=88.07  Aligned_cols=64  Identities=27%  Similarity=0.485  Sum_probs=54.3

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      +|+||+|||+|.|..++.+.+....|.|+|||++.+++ ++||++.++++++........|..|.
T Consensus        60 ~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          60 KNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             CCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            58999999999995456666767889999999999988 99999999999998777676666653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>KOG1327|consensus

Probab=99.27  E-value=5.7e-11  Score=100.22  Aligned_cols=174  Identities=24%  Similarity=0.301  Sum_probs=133.3

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCC----CC-ccceeEEeeccccCCCcccceeecccccccCCCcccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY----GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV   75 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~----~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~   75 (224)
                      +.+||.|-+.|...+....   .+.|+|.+||.+..    .. +|+|++.+.+..+.........+.++..         
T Consensus        50 ~~~~p~f~~~~~l~y~fE~---vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~---------  117 (529)
T KOG1327|consen   50 NVLNPFFTKKFLLQYRFEK---VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPG---------  117 (529)
T ss_pred             ccCCccceeeechhheeee---eeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccC---------
Confidence            3589999999988544444   78999999998854    34 8999999999999766544322333221         


Q ss_pred             cCcccceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEE
Q psy12137         76 WGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEF  153 (224)
Q Consensus        76 ~~~~~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f  153 (224)
                          .....|.|.+.++-...........++|++|...+..+++|||..++-..+.+.  ..++|.+.+++++|.|.+  
T Consensus       118 ----~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~--  191 (529)
T KOG1327|consen  118 ----KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP--  191 (529)
T ss_pred             ----ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc--
Confidence                246788998888876666677777778999999999999999999886543333  678999999999999998  


Q ss_pred             EEEeecCccc----ccEEEEEEEECCCCCCCceeEEEEEecCCC
Q psy12137        154 AIETKITELS----KQTLVITVWDKDYGKSNDYLGCLELCCNSK  193 (224)
Q Consensus       154 ~f~~~~~~~~----~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~  193 (224)
                       |.++...++    +..+.+.+|+++..+++++||.+...+...
T Consensus       192 -~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~  234 (529)
T KOG1327|consen  192 -FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSEL  234 (529)
T ss_pred             -cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHh
Confidence             333334444    367899999999988889999999887654

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.27  E-value=9e-12  Score=87.95  Aligned_cols=63  Identities=30%  Similarity=0.475  Sum_probs=56.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      +++||+|||+|.| .++..++....|.|.|||++..++ ++||++.++|+++........|.+|+
T Consensus        59 ~~~~P~wne~f~f-~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          59 KTQNPNFDETFVF-QVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             CCCCCccceEEEE-EcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            5899999999999 688887777899999999998888 99999999999998888777887775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.26  E-value=2.3e-11  Score=85.95  Aligned_cols=77  Identities=25%  Similarity=0.310  Sum_probs=59.3

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccc-eeecccccccCCCcccccCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRD-LCLNLCKHYPVPREEEVWGE   78 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~-~~~~l~~~~~l~~~~~~~~~   78 (224)
                      +++||.|||.|.| .+..   ..+.|.|+|||++..++ ++||++.++|+++....... .+..+      .        
T Consensus        46 ~~~~P~Wne~~~~-~v~~---~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~------~--------  107 (124)
T cd04044          46 DTSNPVWNETKYI-LVNS---LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNL------L--------  107 (124)
T ss_pred             CCCCCcceEEEEE-EeCC---CCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhh------h--------
Confidence            5789999999999 5652   37899999999998888 99999999999997665432 11111      1        


Q ss_pred             ccceeceEEEEEEEEeC
Q psy12137         79 EECWQHGKIFLTLCFST   95 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~~~   95 (224)
                      ......|+|++++.|.+
T Consensus       108 ~~~k~~G~i~~~l~~~p  124 (124)
T cd04044         108 RNGKPVGELNYDLRFFP  124 (124)
T ss_pred             cCCccceEEEEEEEeCC
Confidence            12356799999999864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.26  E-value=2e-11  Score=85.82  Aligned_cols=72  Identities=29%  Similarity=0.400  Sum_probs=56.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.| .+..  ...+.|.|.|||++.. + ++||++.++++++........|++|.+              
T Consensus        48 ~t~~P~W~e~f~~-~v~~--~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~--------------  109 (121)
T cd08391          48 ENLNPKWNEVYEA-VVDE--VPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED--------------  109 (121)
T ss_pred             CCCCCcccceEEE-EeCC--CCCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcC--------------
Confidence            5899999999999 4543  2468999999999988 7 999999999999976655555555532              


Q ss_pred             cceeceEEEEEEE
Q psy12137         80 ECWQHGKIFLTLC   92 (224)
Q Consensus        80 ~~~~~g~l~i~~~   92 (224)
                        ...|+|++.++
T Consensus       110 --~~~G~~~~~~~  120 (121)
T cd08391         110 --VKSGRLHLKLE  120 (121)
T ss_pred             --CCCceEEEEEe
Confidence              36788888765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.25  E-value=4.2e-11  Score=88.10  Aligned_cols=79  Identities=20%  Similarity=0.270  Sum_probs=60.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE   80 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~   80 (224)
                      +++||+|||+|.| .+...   .+.|.|.|||.|.++.++||++.++++++......+.|+++.+..          -..
T Consensus        79 ~~~nP~WnE~F~~-~~~~~---~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----------~~~  144 (158)
T cd04015          79 NSENPVWNESFHI-YCAHY---ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSN----------GKP  144 (158)
T ss_pred             CCCCCccceEEEE-EccCC---CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCC----------CCC
Confidence            4789999999999 45433   568999999999876699999999999998766666677665420          011


Q ss_pred             ceeceEEEEEEEE
Q psy12137         81 CWQHGKIFLTLCF   93 (224)
Q Consensus        81 ~~~~g~l~i~~~~   93 (224)
                      ....|+|++++.|
T Consensus       145 ~~~~~~l~v~~~f  157 (158)
T cd04015         145 PKPGAKIRVSLQF  157 (158)
T ss_pred             CCCCCEEEEEEEE
Confidence            2456899999987

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.25  E-value=2.8e-11  Score=85.97  Aligned_cols=80  Identities=21%  Similarity=0.347  Sum_probs=57.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC---cccceeecccccccCCCccccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH---ISRDLCLNLCKHYPVPREEEVW   76 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~---~~~~~~~~l~~~~~l~~~~~~~   76 (224)
                      +|+||.|||+|.|. +..  ...+.|.|.|||++..++ ++||++.++|+++...   .....      |+.+.....  
T Consensus        44 ~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~------w~~L~~~~~--  112 (128)
T cd04024          44 NTLNPKWNYWCEFP-IFS--AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDK------WITLKSTRP--  112 (128)
T ss_pred             CCcCCccCCcEEEE-ecC--CCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccce------eEEccCccc--
Confidence            58999999999994 443  346899999999998888 9999999999998632   22333      444432211  


Q ss_pred             CcccceeceEEEEEEE
Q psy12137         77 GEEECWQHGKIFLTLC   92 (224)
Q Consensus        77 ~~~~~~~~g~l~i~~~   92 (224)
                       .......|+|++.+.
T Consensus       113 -~~~~~~~G~i~l~~~  127 (128)
T cd04024         113 -GKTSVVSGEIHLQFS  127 (128)
T ss_pred             -CccccccceEEEEEE
Confidence             122457899988875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.24  E-value=4.3e-11  Score=85.56  Aligned_cols=72  Identities=25%  Similarity=0.400  Sum_probs=58.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC--CcccceeecccccccCCCcccccC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP--HISRDLCLNLCKHYPVPREEEVWG   77 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~--~~~~~~~~~l~~~~~l~~~~~~~~   77 (224)
                      +|+||.|||+|.| .++    ..+.|.|.|||.+..++ ++||++.++|.++..  ......|++|              
T Consensus        56 ~t~~P~Wne~f~~-~v~----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L--------------  116 (132)
T cd04014          56 KTNSPVWNEEFTT-EVH----NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDL--------------  116 (132)
T ss_pred             CCCCCCcceeEEE-EcC----CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEc--------------
Confidence            5899999999999 464    35789999999998888 999999999999976  3445566655              


Q ss_pred             cccceeceEEEEEEEEeC
Q psy12137         78 EEECWQHGKIFLTLCFST   95 (224)
Q Consensus        78 ~~~~~~~g~l~i~~~~~~   95 (224)
                          ...|+|++.+.|..
T Consensus       117 ----~~~G~l~l~~~~~~  130 (132)
T cd04014         117 ----EPQGKLHVKIELKG  130 (132)
T ss_pred             ----cCCcEEEEEEEEec
Confidence                24689999988764

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1030|consensus

Probab=99.24  E-value=8.9e-12  Score=89.89  Aligned_cols=51  Identities=39%  Similarity=0.735  Sum_probs=45.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~   55 (224)
                      +++||+|||.|.| .|+..   ...|.+.|||+|++++ |+||+|.|+|..+....
T Consensus        47 ~n~NPeWNe~ltf-~v~d~---~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   47 KNLNPEWNEELTF-TVKDP---NTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             CCCCCcccceEEE-EecCC---CceEEEEEEeCCCCCcccccceeeeccHHHHHHh
Confidence            6899999999999 46555   7899999999999999 99999999999986443

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.24  E-value=3.1e-11  Score=85.18  Aligned_cols=61  Identities=21%  Similarity=0.326  Sum_probs=49.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCC------C-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG------H-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~------~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +++||+|||+|.| .+...   ...|.|+|||++..+      + ++||++.++|+++........|++|..
T Consensus        44 ~~~nP~WnE~f~f-~v~~~---~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          44 DSSNPRWNEQYTW-PVYDP---CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             CCCCCcceeEEEE-EecCC---CCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence            5799999999999 45432   458999999999873      5 999999999999987777667777654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.23  E-value=2.1e-11  Score=86.04  Aligned_cols=60  Identities=30%  Similarity=0.592  Sum_probs=51.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceee
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCL   61 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~   61 (224)
                      +++||+|||+|.| .++..++....|.|.|||++.+++ ++||++.++|+++........|.
T Consensus        61 ~t~~P~wne~f~f-~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~  121 (123)
T cd08521          61 NTTNPVFNETLKY-HISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWY  121 (123)
T ss_pred             CCCCCcccceEEE-eCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEE
Confidence            5799999999999 688888878899999999999988 99999999999996554444443

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>PLN02952 phosphoinositide phospholipase C

Probab=99.22  E-value=1.4e-10  Score=100.43  Aligned_cols=111  Identities=23%  Similarity=0.216  Sum_probs=85.2

Q ss_pred             CEEEEEEEEeecCCCCC------CCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEE
Q psy12137         98 RALIVNLIKCTNLIPMD------SNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT  170 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~------~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~  170 (224)
                      ..|.|.|+.|.+++...      .....||||++.+.+-.. ..+++|+++.++.||.|||+|.|.+...++  +.|.|.
T Consensus       470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL--Allrf~  547 (599)
T PLN02952        470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL--ALLRIE  547 (599)
T ss_pred             ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc--cEEEEE
Confidence            47899999998875321      112358999999864222 267799999999999999999999865444  489999


Q ss_pred             EEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCcee
Q psy12137        171 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH  211 (224)
Q Consensus       171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~  211 (224)
                      |||+|..+.++++|+..++++....+++ |..|.+..+..+
T Consensus       548 V~D~D~~~~ddfiGq~~lPv~~Lr~GyR-~VpL~~~~G~~l  587 (599)
T PLN02952        548 VREYDMSEKDDFGGQTCLPVSELRPGIR-SVPLHDKKGEKL  587 (599)
T ss_pred             EEecCCCCCCCeEEEEEcchhHhcCCce-eEeCcCCCCCCC
Confidence            9999988889999999999998777774 666665554443

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.21  E-value=3.3e-11  Score=85.28  Aligned_cols=51  Identities=33%  Similarity=0.604  Sum_probs=44.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      +|+||+|||+|.|..++..++....|.|.|||++..++ ++||++.++|++.
T Consensus        62 ~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~  113 (125)
T cd04031          62 KTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADA  113 (125)
T ss_pred             CCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccc
Confidence            58999999999995456566777899999999999888 9999999999984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.20  E-value=8.4e-11  Score=83.33  Aligned_cols=74  Identities=24%  Similarity=0.424  Sum_probs=56.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC---cccceeecccccccCCCccccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH---ISRDLCLNLCKHYPVPREEEVW   76 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~---~~~~~~~~l~~~~~l~~~~~~~   76 (224)
                      +|+||.|||+|.| .+...  ....|.|.|||.+..++ ++||++.++|+.+...   .....|+++             
T Consensus        45 ~t~~P~Wne~f~f-~i~~~--~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l-------------  108 (126)
T cd04043          45 DTLNPRWDEEFEL-EVPAG--EPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-------------  108 (126)
T ss_pred             CCCCCcccceEEE-EcCCC--CCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEc-------------
Confidence            5899999999999 45543  36789999999998888 9999999999886432   234445554             


Q ss_pred             CcccceeceEEEEEEEEeC
Q psy12137         77 GEEECWQHGKIFLTLCFST   95 (224)
Q Consensus        77 ~~~~~~~~g~l~i~~~~~~   95 (224)
                           ...|+|++.+.+..
T Consensus       109 -----~~~g~i~l~~~~~~  122 (126)
T cd04043         109 -----DTQGRLLLRVSMEG  122 (126)
T ss_pred             -----CCCCeEEEEEEEee
Confidence                 23588888887754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.20  E-value=1.6e-10  Score=100.05  Aligned_cols=108  Identities=20%  Similarity=0.274  Sum_probs=83.4

Q ss_pred             CEEEEEEEEeecCCCC------CCCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEE
Q psy12137         98 RALIVNLIKCTNLIPM------DSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT  170 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~------~~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~  170 (224)
                      ..|.|+|+.+.+++..      +.....||||++.+.+-.. ..+++|++..++.||.|||+|.|.+...++  +.|.|.
T Consensus       469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL--AllRf~  546 (598)
T PLN02230        469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL--ALLRVE  546 (598)
T ss_pred             cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce--eEEEEE
Confidence            4789999999986422      1123469999999975322 256788888889999999999999865554  489999


Q ss_pred             EEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCC
Q psy12137        171 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD  208 (224)
Q Consensus       171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~  208 (224)
                      |+|+|..++++++|+..|++.....+++|- .|.+..+
T Consensus       547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V-~L~~~~G  583 (598)
T PLN02230        547 VHEHDINEKDDFGGQTCLPVSEIRQGIHAV-PLFNRKG  583 (598)
T ss_pred             EEECCCCCCCCEEEEEEcchHHhhCccceE-eccCCCc
Confidence            999998888999999999999887777653 4444444

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.19  E-value=1.1e-10  Score=82.14  Aligned_cols=77  Identities=25%  Similarity=0.423  Sum_probs=56.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc-ccceeecccccccCCCcccccCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI-SRDLCLNLCKHYPVPREEEVWGE   78 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~-~~~~~~~l~~~~~l~~~~~~~~~   78 (224)
                      +|+||+|||.|.| .++..   .+.|.|.|||.+..++ ++||++.++++.+.... ..+.|.+|++.           .
T Consensus        42 ~t~nP~Wne~f~~-~~~~~---~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~-----------~  106 (121)
T cd04054          42 KTLNPFWGEEYTV-HLPPG---FHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEV-----------D  106 (121)
T ss_pred             CCCCCcccceEEE-eeCCC---CCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeee-----------C
Confidence            5899999999999 46543   4789999999999998 99999999998886432 24455555331           1


Q ss_pred             ccceeceEEEEEEE
Q psy12137         79 EECWQHGKIFLTLC   92 (224)
Q Consensus        79 ~~~~~~g~l~i~~~   92 (224)
                      ......|+|++.+.
T Consensus       107 ~~~~~~G~i~l~~~  120 (121)
T cd04054         107 PDEEVQGEIHLELS  120 (121)
T ss_pred             CCCccccEEEEEEE
Confidence            11246789987764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.19  E-value=5.4e-11  Score=84.44  Aligned_cols=62  Identities=24%  Similarity=0.410  Sum_probs=52.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCC--CC-ccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY--GH-DFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~--~~-~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +|+||+|||+|.| .++..++....|.|.|||.+.+  ++ ++||++.++|+++........|.+|
T Consensus        62 ~~~nP~wne~f~f-~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          62 DNLNPVFDETFEF-PVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             CCCCCEECeEEEE-ecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            5899999999999 6888888788999999999976  56 9999999999999766555555544

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.18  E-value=4.8e-11  Score=88.15  Aligned_cols=64  Identities=28%  Similarity=0.417  Sum_probs=53.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      +|+||.|||+|.|..++.+++....|.|.|||++.+++ ++||++.++++++......+.|..+.
T Consensus        73 ~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~  137 (162)
T cd04020          73 KSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST  137 (162)
T ss_pred             CCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence            58999999999995466777777899999999999998 99999999999997666656555553

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.18  E-value=5.3e-11  Score=82.36  Aligned_cols=53  Identities=32%  Similarity=0.564  Sum_probs=47.6

Q ss_pred             CCCCCee-ccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          1 RTINPEF-HEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         1 ~t~nP~w-~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      +++||.| ||+|.| .++..++..+.|.|+|||.+.+++ ++||++.+++.++...
T Consensus        41 ~~~nP~W~ne~f~f-~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~   95 (110)
T cd08688          41 KSLNPVWNSEWFRF-EVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLK   95 (110)
T ss_pred             CCCCCcccCcEEEE-EcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhccc
Confidence            5799999 999999 687777767899999999999988 9999999999999763

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.16  E-value=3.6e-10  Score=97.67  Aligned_cols=108  Identities=17%  Similarity=0.141  Sum_probs=82.2

Q ss_pred             CEEEEEEEEeecCC--CC----CCCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEE
Q psy12137         98 RALIVNLIKCTNLI--PM----DSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT  170 (224)
Q Consensus        98 ~~l~v~i~~a~~L~--~~----~~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~  170 (224)
                      ..|.|.|+.|.+++  ..    +.....||||++.+.+-.. ..+++|+++.++.+|.|||+|.|.+...++  +.|.|.
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL--AllRf~  529 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL--ALLRLE  529 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce--eEEEEE
Confidence            36889999998743  11    1223568999999864322 367789999998999999999999865544  589999


Q ss_pred             EEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCC
Q psy12137        171 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD  208 (224)
Q Consensus       171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~  208 (224)
                      |+|+|..+.++++|+..|++.....+++|- .|.+..+
T Consensus       530 V~d~D~~~~ddfigq~~lPv~~Lr~GyR~V-~L~~~~g  566 (581)
T PLN02222        530 VHEYDMSEKDDFGGQTCLPVWELSQGIRAF-PLHSRKG  566 (581)
T ss_pred             EEECCCCCCCcEEEEEEcchhhhhCccceE-EccCCCc
Confidence            999998888999999999999887777653 3444333

>KOG2059|consensus

Probab=99.15  E-value=1.1e-10  Score=100.22  Aligned_cols=100  Identities=26%  Similarity=0.402  Sum_probs=83.3

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  177 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~  177 (224)
                      ..|.|+|.+|+||+..+..|.+||||.+.+.   ....++|.++.+++.|.|.|.|.|.++..   =..|.|=|||.| +
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD---~E~v~RT~tv~ksL~PF~gEe~~~~iP~~---F~~l~fYv~D~d-~   77 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD---QEEVCRTATVEKSLCPFFGEEFYFEIPRT---FRYLSFYVWDRD-L   77 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeec---chhhhhhhhhhhhcCCccccceEEecCcc---eeeEEEEEeccc-c
Confidence            4678999999999999999999999999994   23788999999999999999999999643   257899999999 8


Q ss_pred             CCCceeEEEEEecCC--CCCccchhhhhh
Q psy12137        178 KSNDYLGCLELCCNS--KGDRLRHWVDMM  204 (224)
Q Consensus       178 ~~~~~lG~~~l~l~~--~~~~~~~w~~l~  204 (224)
                      ++|+.||.+.|.=.+  ...+.++|+.|.
T Consensus        78 ~~D~~IGKvai~re~l~~~~~~d~W~~L~  106 (800)
T KOG2059|consen   78 KRDDIIGKVAIKREDLHMYPGKDTWFSLQ  106 (800)
T ss_pred             ccccccceeeeeHHHHhhCCCCccceecc
Confidence            999999999998543  223556666654

>KOG1031|consensus

Probab=99.14  E-value=1.5e-10  Score=97.80  Aligned_cols=116  Identities=23%  Similarity=0.310  Sum_probs=98.4

Q ss_pred             CEEEEEEEEeecCCCCCCC-CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeec-eEEEEEeecCcccccEEEEEEEECC
Q psy12137         98 RALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~-g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~-e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      +.|-|.|..||+||.++.. ...|.||.+++    +...++|.+..+++||.|| +.|.|.+...+++.+.|.|.+.|+|
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~----~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d   78 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF----ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD   78 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEe----cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence            6788999999999999874 46799999998    6789999999999999998 7899999988999999999999999


Q ss_pred             CCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        176 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      ..+.++-||.+.|+++..-  ++.--.-....+..+.+|+|+..
T Consensus        79 tysandaigkv~i~idpl~--~e~aaqavhgkgtvisgw~pifd  120 (1169)
T KOG1031|consen   79 TYSANDAIGKVNIDIDPLC--LEEAAQAVHGKGTVISGWFPIFD  120 (1169)
T ss_pred             ccccccccceeeeccChHH--HHhHHhhhcCCceEEeeeeecce
Confidence            9999999999999998522  12222344567788999999874

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.14  E-value=3.5e-10  Score=79.26  Aligned_cols=76  Identities=26%  Similarity=0.486  Sum_probs=56.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||.|||+|.| .+..  + .+.|.|+|||++..++ ++||++.+++.++....  ..|..+..      .     ..
T Consensus        42 ~t~nP~W~e~f~~-~~~~--~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~------~-----~~  104 (119)
T cd08377          42 KTLNPEWNKIFTF-PIKD--I-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKD------K-----KL  104 (119)
T ss_pred             CCcCCccCcEEEE-EecC--c-CCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcc------c-----CC
Confidence            5789999999999 4543  2 5789999999998888 99999999999986432  23334322      1     11


Q ss_pred             cceeceEEEEEEEE
Q psy12137         80 ECWQHGKIFLTLCF   93 (224)
Q Consensus        80 ~~~~~g~l~i~~~~   93 (224)
                      .....|+|.+++.+
T Consensus       105 ~~~~~G~i~l~~~~  118 (119)
T cd08377         105 RTRAKGSILLEMDV  118 (119)
T ss_pred             CCceeeEEEEEEEe
Confidence            23579999998865

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.14  E-value=5.8e-11  Score=85.11  Aligned_cols=49  Identities=29%  Similarity=0.452  Sum_probs=46.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNR   50 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~   50 (224)
                      +|+||+|||+|.| .|+.+++....|.|.|||+|.+++ ++||++.+.+..
T Consensus        63 ~t~nPvfNE~f~F-~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          63 HKINPVWNEMIMF-ELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             CCCCCccccEEEE-ECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence            5899999999999 799999999999999999999999 999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>KOG1326|consensus

Probab=99.13  E-value=6.1e-11  Score=105.11  Aligned_cols=123  Identities=24%  Similarity=0.319  Sum_probs=83.2

Q ss_pred             CCEEEEEEEEeecCCCCCCC----CCCCcEEEEEEecCCCCCeEeeeeeeCCC--CCeeceEEEEEe---ecCcccc---
Q psy12137         97 KRALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTL--NPIFNEEFAIET---KITELSK---  164 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~----g~~dpyv~~~~~~~~~~~~~~T~~~~~~~--~p~~~e~f~f~~---~~~~~~~---  164 (224)
                      ...++|.|-.-.++...+..    ..+|.||+-.+.+.. ..+++|.+++++.  .-.||..|.|..   +++++.-   
T Consensus       845 ~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gde-e~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~k  923 (1105)
T KOG1326|consen  845 KYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDE-EEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAK  923 (1105)
T ss_pred             heeEEEEEeeccceeecCccceeeeccceEEecccccch-hhhcccceeeeeccCCcccceeeecccccchHhhHhhhhh
Confidence            45677777766666544432    257999999886432 3788898887754  345666665543   2222221   


Q ss_pred             ---------------cEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhc----------CCCceeEeeeecCC
Q psy12137        165 ---------------QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK----------YPDHKHEGIHNLSI  219 (224)
Q Consensus       165 ---------------~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~----------~~~~~~~~wh~l~~  219 (224)
                                     ..|.|+|||.|.+++|++||-.+++|+....+..+-.++.-          ...+.+.+|.|++.
T Consensus       924 ke~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a 1003 (1105)
T KOG1326|consen  924 KEYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQA 1003 (1105)
T ss_pred             hhhccccccccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeee
Confidence                           56999999999999999999999999976655555444321          34567889998874


Q ss_pred             C
Q psy12137        220 K  220 (224)
Q Consensus       220 ~  220 (224)
                      .
T Consensus      1004 ~ 1004 (1105)
T KOG1326|consen 1004 E 1004 (1105)
T ss_pred             c
Confidence            3

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.13  E-value=9.1e-11  Score=80.80  Aligned_cols=53  Identities=28%  Similarity=0.526  Sum_probs=44.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~   55 (224)
                      +|+||+|||+|.| .+...+. ...|.|.|||+|..++ ++||++.++|+++....
T Consensus        46 ~t~nPvWne~f~f-~v~~~~~-~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          46 HTLNPVFNERLAF-EVYPHEK-NFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCCCCcccceEEE-EEeCccC-CCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence            5899999999999 5544432 4689999999999998 99999999999996443

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.12  E-value=9.6e-11  Score=82.13  Aligned_cols=55  Identities=25%  Similarity=0.403  Sum_probs=46.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCC-C-ccceeEEeeccccCCCccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-H-DFLGEARFPLNRLRPHISR   57 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~-~-~~lG~~~i~l~~~~~~~~~   57 (224)
                      +|+||+|||+|.| .++.+++ ...|.|.|||++..+ + ++||++.|+|.++......
T Consensus        57 ~t~~P~~nE~F~f-~v~~~~~-~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~  113 (119)
T cd08685          57 DSANPLFHETFSF-DVNERDY-QKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEI  113 (119)
T ss_pred             CCCCCccccEEEE-EcChHHh-CCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccc
Confidence            5899999999999 6877776 357899999999876 5 8999999999999754433

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>KOG0169|consensus

Probab=99.12  E-value=2.3e-10  Score=99.49  Aligned_cols=100  Identities=27%  Similarity=0.378  Sum_probs=81.3

Q ss_pred             EEEEEEEEeecCCCCCC----CCCCCcEEEEEEecCCCC-CeEeee-eeeCCCCCeeceEEEEEeecCcccccEEEEEEE
Q psy12137         99 ALIVNLIKCTNLIPMDS----NGFSDPFIKLYLKPDLHK-RKYKTG-VKWKTLNPIFNEEFAIETKITELSKQTLVITVW  172 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~----~g~~dpyv~~~~~~~~~~-~~~~T~-~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~  172 (224)
                      .|.|+|+.+.+.+....    ...+||||.+.+.+-... ...+|+ +..++-+|.|+|+|.|.+...++  +.|.|.|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL--AliRF~V~  694 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL--ALIRFEVH  694 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce--eEEEEEEE
Confidence            69999999997654332    245799999998542222 678898 56678999999999999976666  48999999


Q ss_pred             ECCCCCCCceeEEEEEecCCCCCccchh
Q psy12137        173 DKDYGKSNDYLGCLELCCNSKGDRLRHW  200 (224)
Q Consensus       173 ~~~~~~~~~~lG~~~l~l~~~~~~~~~w  200 (224)
                      |+|..++|+|+|+..+++..+..+++|-
T Consensus       695 d~d~~~~ddF~GQ~tlP~~~L~~GyRhV  722 (746)
T KOG0169|consen  695 DYDYIGKDDFIGQTTLPVSELRQGYRHV  722 (746)
T ss_pred             ecCCCCcccccceeeccHHHhhCceeee
Confidence            9999999999999999999888888774

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.12  E-value=1.7e-10  Score=80.67  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=41.3

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS   56 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~   56 (224)
                      +.||+|||+|.| .+.  +. ...|.|+|||.|..++++||++.|+|.++.....
T Consensus        40 ~~nP~WnE~F~F-~~~--~~-~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~   90 (127)
T cd08394          40 GSQPCWEQDFMF-EIN--RL-DLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNE   90 (127)
T ss_pred             CCCCceeeEEEE-EEc--CC-CCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCC
Confidence            459999999999 453  33 4559999999996644999999999999976643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.11  E-value=1.2e-10  Score=80.76  Aligned_cols=54  Identities=22%  Similarity=0.371  Sum_probs=45.1

Q ss_pred             CCCCCeeccEEEECccCcccc-ccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~-~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~   55 (224)
                      +|+||+|||+|.| .+...++ ....|.|+|||+|.+++ ++||++.++++++..+.
T Consensus        46 ~t~nP~Wne~f~f-~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~  101 (111)
T cd04041          46 KDLNPVWEETWFV-LVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDR  101 (111)
T ss_pred             CCCCCccceeEEE-EeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhcCC
Confidence            5899999999999 4544433 45789999999999998 99999999999997443

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.10  E-value=4.1e-10  Score=79.94  Aligned_cols=74  Identities=27%  Similarity=0.451  Sum_probs=52.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCC-----------CC-ccceeEEeeccccCCCcccceeeccccccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-----------GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYP   68 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~-----------~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~   68 (224)
                      +|+||.|||+|.| .+...   ...|.|.|||+|..           +. ++||++.+++.++.  .....|..|.+.  
T Consensus        42 ~t~~P~Wne~f~f-~~~~~---~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~--  113 (127)
T cd04027          42 QNLNPVWNEKFHF-ECHNS---SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKR--  113 (127)
T ss_pred             CCCCCccceEEEE-EecCC---CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccC--
Confidence            5899999999999 44322   46899999999853           35 89999999999874  233445555432  


Q ss_pred             CCCcccccCcccceeceEEEEEE
Q psy12137         69 VPREEEVWGEEECWQHGKIFLTL   91 (224)
Q Consensus        69 l~~~~~~~~~~~~~~~g~l~i~~   91 (224)
                               ......+|+|.+++
T Consensus       114 ---------~~~~~~~G~i~~~~  127 (127)
T cd04027         114 ---------TDKSAVSGAIRLHI  127 (127)
T ss_pred             ---------CCCCcEeEEEEEEC
Confidence                     12235789998763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.10  E-value=1.4e-10  Score=83.11  Aligned_cols=49  Identities=27%  Similarity=0.328  Sum_probs=45.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNR   50 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~   50 (224)
                      +|+||+|||+|.| .|+.+++....|+|.|||+|.+++ ++||++.+....
T Consensus        61 ~t~nP~~nE~f~F-~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          61 DDTNPIFNEAMIF-SVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             CCCCCeeceeEEE-ECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence            5899999999999 799999999999999999999999 999999997653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>PLN02228 Phosphoinositide phospholipase C

Probab=99.10  E-value=9.7e-10  Score=94.78  Aligned_cols=109  Identities=21%  Similarity=0.238  Sum_probs=84.4

Q ss_pred             EEEEEEEEeecCCC---CC---CCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCee-ceEEEEEeecCcccccEEEEE
Q psy12137         99 ALIVNLIKCTNLIP---MD---SNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVIT  170 (224)
Q Consensus        99 ~l~v~i~~a~~L~~---~~---~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~-~e~f~f~~~~~~~~~~~l~i~  170 (224)
                      .|.|+|+.|.+++.   ..   .....||||++.+.+-.. ..+++|++..++.+|.| ||+|.|.+...++  +.|.|.
T Consensus       432 ~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL--A~lRf~  509 (567)
T PLN02228        432 TLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL--ALLWFK  509 (567)
T ss_pred             eEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce--eEEEEE
Confidence            68999999998732   11   123479999999865322 26778999888899999 9999999865554  489999


Q ss_pred             EEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCce
Q psy12137        171 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK  210 (224)
Q Consensus       171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~  210 (224)
                      |+|++..+.++++|+..|+++....+++|- .|.+..++.
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~V-pL~~~~G~~  548 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGVRAV-RLHDRAGKA  548 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCeeEE-EccCCCCCC
Confidence            999998888999999999999988888765 555555444

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.09  E-value=8.1e-10  Score=78.30  Aligned_cols=79  Identities=22%  Similarity=0.278  Sum_probs=55.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE   80 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~   80 (224)
                      +|+||+|||.|.| .+...   ...|.|+|||++..+.++||++.+++..+....  ..++++..      ..   ....
T Consensus        44 ~t~nP~Wne~f~f-~~~~~---~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~~~--~~~~~l~~------~~---~~~~  108 (126)
T cd04046          44 DTLSPEFDTQAIF-YRKKP---RSPIKIQVWNSNLLCDEFLGQATLSADPNDSQT--LRTLPLRK------RG---RDAA  108 (126)
T ss_pred             CCCCCcccceEEE-EecCC---CCEEEEEEEECCCCCCCceEEEEEecccCCCcC--ceEEEccc------CC---CCCC
Confidence            5789999999999 44332   678999999999765599999999998764322  22333321      10   1123


Q ss_pred             ceeceEEEEEEEEe
Q psy12137         81 CWQHGKIFLTLCFS   94 (224)
Q Consensus        81 ~~~~g~l~i~~~~~   94 (224)
                      ....|+|.+++.+.
T Consensus       109 ~~~~G~i~~~~~~~  122 (126)
T cd04046         109 GEVPGTISVKVTSS  122 (126)
T ss_pred             CCCCCEEEEEEEEc
Confidence            47889998887654

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>PLN03008 Phospholipase D delta

Probab=99.08  E-value=3.5e-10  Score=100.24  Aligned_cols=81  Identities=20%  Similarity=0.347  Sum_probs=66.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE   80 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~   80 (224)
                      |++||+|||+|.| .+...   ...|.|.|||.|.++.++||++.|||+++......+.|+++.....          ..
T Consensus        98 n~~NPvWNE~F~f-~vah~---~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----------kp  163 (868)
T PLN03008         98 NSQEPLWDEKFNI-SIAHP---FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASG----------KP  163 (868)
T ss_pred             CCCCCCcceeEEE-EecCC---CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCC----------CC
Confidence            5789999999999 45542   5699999999999987999999999999988887888888765311          22


Q ss_pred             ceeceEEEEEEEEeC
Q psy12137         81 CWQHGKIFLTLCFST   95 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~   95 (224)
                      ....|+|++++.|.+
T Consensus       164 ~k~~~kl~v~lqf~p  178 (868)
T PLN03008        164 PKAETAIFIDMKFTP  178 (868)
T ss_pred             CCCCcEEEEEEEEEE
Confidence            356789999999987

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.08  E-value=7.1e-10  Score=78.26  Aligned_cols=77  Identities=27%  Similarity=0.438  Sum_probs=55.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC---ccceeEEeeccccCCCcc-cceeecccccccCCCccccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRLRPHIS-RDLCLNLCKHYPVPREEEVW   76 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~---~~lG~~~i~l~~~~~~~~-~~~~~~l~~~~~l~~~~~~~   76 (224)
                      +|+||.|||+|.| .+..    .+.|.|+|||++.+++   ++||++.+++.++..... ...|+++.+...        
T Consensus        42 ~t~nP~Wne~f~~-~~~~----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~--------  108 (123)
T cd08382          42 KTLDPKWNEHFDL-TVGP----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK--------  108 (123)
T ss_pred             CCCCCcccceEEE-EeCC----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCC--------
Confidence            5899999999999 4543    5799999999998763   699999999999965543 244555533110        


Q ss_pred             CcccceeceEEEEEE
Q psy12137         77 GEEECWQHGKIFLTL   91 (224)
Q Consensus        77 ~~~~~~~~g~l~i~~   91 (224)
                       .......|+|.+.+
T Consensus       109 -~~~~~~~G~v~~~~  122 (123)
T cd08382         109 -SDNLSVRGKIVVSL  122 (123)
T ss_pred             -CCCceEeeEEEEEe
Confidence             11235688887765

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.06  E-value=3.5e-10  Score=79.79  Aligned_cols=61  Identities=44%  Similarity=0.932  Sum_probs=51.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeec
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLN   62 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~   62 (224)
                      +++||.|||+|.|..++..++....|.|.|||++.+ + ++||++.++|+++.......++.+
T Consensus        61 ~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          61 KTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             CCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence            478999999999954666777778999999999988 7 999999999999987766665543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.05  E-value=1.7e-10  Score=82.95  Aligned_cols=60  Identities=23%  Similarity=0.380  Sum_probs=49.6

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +|+||+|||+|.| .++..++....|.|.|||+|.+++ ++||++.+++.. . ......|.++
T Consensus        61 ~t~nP~w~e~F~f-~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~-~~~~~~w~~l  121 (136)
T cd08404          61 CTLNPVFNESFVF-DIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-S-GSGGHHWKEV  121 (136)
T ss_pred             CCCCCccCceEEE-ECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC-C-CchHHHHHHH
Confidence            5899999999999 688877777889999999999998 999999999988 2 3344444444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.05  E-value=2.8e-10  Score=79.96  Aligned_cols=60  Identities=32%  Similarity=0.446  Sum_probs=49.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCC----CCC-ccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK----YGH-DFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~----~~~-~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +|+||+|||+|.|. +..+  ..+.|.|+|||+|.    .++ ++||++.+++.++........++.|
T Consensus        48 ~t~nP~wne~f~f~-~~~~--~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l  112 (120)
T cd04048          48 NNLNPDFVTTFTVD-YYFE--EVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPL  112 (120)
T ss_pred             CCCCCCceEEEEEE-EEeE--eeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence            58999999999994 4333  25689999999997    677 9999999999999877666666665

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.05  E-value=8e-10  Score=79.29  Aligned_cols=81  Identities=20%  Similarity=0.397  Sum_probs=54.9

Q ss_pred             CCCCCeeccEEEECccCc----cccc--cCeEEEEEEeCCCCCC-ccceeEEe-eccccCC---CcccceeecccccccC
Q psy12137          1 RTINPEFHEKLTFYSVSE----TDLS--LQSLHILVLDDDKYGH-DFLGEARF-PLNRLRP---HISRDLCLNLCKHYPV   69 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~----~~~~--~~~l~i~v~d~d~~~~-~~lG~~~i-~l~~~~~---~~~~~~~~~l~~~~~l   69 (224)
                      +|+||+|||+|.|..+..    +++.  ...|.|+|||+|..++ ++||++.+ ++..+..   ......      |+++
T Consensus        42 ~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~------W~~L  115 (135)
T cd04017          42 ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQ------WFPI  115 (135)
T ss_pred             CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCce------EEEe
Confidence            589999999999952222    1121  2579999999999988 99999987 4444432   233334      4444


Q ss_pred             CCcccccCcccceeceEEEEEEEEeC
Q psy12137         70 PREEEVWGEEECWQHGKIFLTLCFST   95 (224)
Q Consensus        70 ~~~~~~~~~~~~~~~g~l~i~~~~~~   95 (224)
                      ...        ....|+|.+++++..
T Consensus       116 ~~~--------~~~~Geil~~~~~~~  133 (135)
T cd04017         116 YKG--------GQSAGELLAAFELIE  133 (135)
T ss_pred             ecC--------CCchhheeEEeEEEE
Confidence            322        257899999998754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.04  E-value=2e-10  Score=82.64  Aligned_cols=62  Identities=18%  Similarity=0.272  Sum_probs=50.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +++||+|||+|.| .|+.+++....|.|.|||++..++ ++||++.+...........+.|.++
T Consensus        60 ~~~nP~fnE~F~f-~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~  122 (137)
T cd08409          60 GAASPSFNESFSF-KVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDM  122 (137)
T ss_pred             CCCCCcccceEEE-ECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHH
Confidence            5899999999999 799999988999999999999888 9999999986554434444444444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.04  E-value=3.7e-10  Score=78.22  Aligned_cols=55  Identities=18%  Similarity=0.221  Sum_probs=45.7

Q ss_pred             CCCCCeeccEEEECc-cCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYS-VSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~-v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~   55 (224)
                      +|+||.|||+|.|.. .+..++....|.|.|||++.+++ ++||++.++|+++....
T Consensus        41 ~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~   97 (111)
T cd04011          41 GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQP   97 (111)
T ss_pred             ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCC
Confidence            478999999999942 33445567899999999999988 99999999999996553

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.03  E-value=8.8e-10  Score=79.21  Aligned_cols=64  Identities=31%  Similarity=0.430  Sum_probs=51.8

Q ss_pred             CCCCCeeccEEEECccCc-------------cccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSE-------------TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~-------------~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      ++.||.|||+|.|. +..             +++....|.|.|||.+..++ ++||++.++|.++........|++|.+
T Consensus        43 ~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~  120 (137)
T cd08675          43 KTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQP  120 (137)
T ss_pred             CCCCCCcceEEEEE-ccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCC
Confidence            47899999999994 433             24567899999999998888 999999999999976666666666654

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>PLN02270 phospholipase D alpha

Probab=99.03  E-value=1.6e-09  Score=95.97  Aligned_cols=106  Identities=19%  Similarity=0.271  Sum_probs=82.6

Q ss_pred             CCEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEecCCCC-CeEeeeeeeCC-CCCeeceEEEEE
Q psy12137         97 KRALIVNLIKCTNLIPMD------------------SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKT-LNPIFNEEFAIE  156 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~------------------~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~-~~p~~~e~f~f~  156 (224)
                      .|.|.++|++|++|+..+                  ..+.+||||.+.+    ++ ...+|+++.+. .||.|+|.|.+.
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~----~~a~v~rtr~~~~~~~~p~w~e~f~i~   82 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL----EKARVGRTRKIENEPKNPRWYESFHIY   82 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe----CCcEEEEEeecCCCCCCCccccceEEe
Confidence            578899999999998521                  1357799999999    55 77899999875 599999999998


Q ss_pred             eecCcccccEEEEEEEECCCCCCCceeEEEEEecCC--CCCccchhhhhhcCCCce
Q psy12137        157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHK  210 (224)
Q Consensus       157 ~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~--~~~~~~~w~~l~~~~~~~  210 (224)
                      +...   ...|.|+|.|.+.++. .+||.+.|++..  .|...+.|++++...++.
T Consensus        83 ~ah~---~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p  134 (808)
T PLN02270         83 CAHM---ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNP  134 (808)
T ss_pred             eccC---cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCc
Confidence            8543   3689999999998865 599999999875  345566666666554433

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.02  E-value=4.3e-10  Score=80.87  Aligned_cols=50  Identities=28%  Similarity=0.380  Sum_probs=45.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      +++||+|||+|.| .++.+++....|.|.|||++.+++ ++||++.+++...
T Consensus        62 ~t~nPvfnEtF~f-~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~  112 (138)
T cd08408          62 GQPDPEFKETFVF-QVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS  112 (138)
T ss_pred             CCCCCcEeeeEEE-ECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence            4799999999999 699999999999999999999888 9999999988754

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.01  E-value=2.3e-09  Score=77.36  Aligned_cols=88  Identities=9%  Similarity=0.115  Sum_probs=59.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCC-CC---C-ccceeEEeeccccCCCcccceeecccccccCCCcccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK-YG---H-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV   75 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~-~~---~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~   75 (224)
                      ++.||.|+|.|.|. ....   ...|.|.||+.+. .+   + .+||.+.||++++......+.|+++......   .+.
T Consensus        48 ~~~nP~W~E~F~f~-~~~~---~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~---~~~  120 (146)
T cd04013          48 KTDTLFWGEHFEFS-NLPP---VSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGN---GKS  120 (146)
T ss_pred             CCCCCcceeeEEec-CCCc---ccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCC---Ccc
Confidence            47899999999994 2222   4679999987653 21   4 8999999999999876666666666542211   111


Q ss_pred             cCcccceeceEEEEEEEEeC
Q psy12137         76 WGEEECWQHGKIFLTLCFST   95 (224)
Q Consensus        76 ~~~~~~~~~g~l~i~~~~~~   95 (224)
                      .+.......++|++++.|.+
T Consensus       121 ~~~~~~~~~~~lrik~rf~~  140 (146)
T cd04013         121 GGKEGKGESPSIRIKARYQS  140 (146)
T ss_pred             ccccccCCCCEEEEEEEEEE
Confidence            11112345689999999974

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.01  E-value=3e-10  Score=81.59  Aligned_cols=50  Identities=30%  Similarity=0.523  Sum_probs=45.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      +|+||+|||+|.| .++.+++....|.|+|||++.+++ ++||++.+++.+.
T Consensus        61 ~t~~P~wne~F~f-~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          61 RTLNPVFNESFIF-NIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCcccceEEE-eCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence            5799999999999 687777767899999999999988 9999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>KOG1264|consensus

Probab=99.01  E-value=5.5e-09  Score=91.33  Aligned_cols=93  Identities=20%  Similarity=0.268  Sum_probs=75.3

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC--CCeEeeeeeeCCCCCeec-eEEEEEeecCcccccEEEEEEEE
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWD  173 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~--~~~~~T~~~~~~~~p~~~-e~f~f~~~~~~~~~~~l~i~v~~  173 (224)
                      ...|.|.|+.||+|+.. ..|.+.|||.+.+.+-..  ++.++|.+..+.+||+|| |+|+|.+...  .=+.|.|.|++
T Consensus      1064 p~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP--e~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP--EFAFLRFVVYE 1140 (1267)
T ss_pred             ceEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC--ceEEEEEEEec
Confidence            35789999999999854 345678999999864221  245566677788999999 9999999544  34689999999


Q ss_pred             CCCCCCCceeEEEEEecCC
Q psy12137        174 KDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       174 ~~~~~~~~~lG~~~l~l~~  192 (224)
                      .|+++...|||++..|+.+
T Consensus      1141 eDmfs~~~FiaqA~yPv~~ 1159 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKA 1159 (1267)
T ss_pred             ccccCCcceeeeeecchhh
Confidence            9999999999999999885

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.01  E-value=3.7e-10  Score=80.77  Aligned_cols=49  Identities=33%  Similarity=0.644  Sum_probs=44.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNR   50 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~   50 (224)
                      +|+||+|||+|.| .++..++....|.|.|||+|..++ ++||++.+++..
T Consensus        59 ~t~nP~wne~f~f-~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          59 KTLNPEFNEEFFY-DIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             ccCCCCcccEEEE-ECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence            5899999999999 688877777899999999998888 999999999985

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.00  E-value=9.6e-10  Score=76.58  Aligned_cols=62  Identities=32%  Similarity=0.480  Sum_probs=51.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +++||.|||+|.| .+...  ..+.|.|+|||++..++ ++||++.+++.++........|+++..
T Consensus        41 ~~~~P~Wne~f~~-~~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~  103 (115)
T cd04040          41 KTLNPVWNESFEV-PVPSR--VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDG  103 (115)
T ss_pred             CCCCCcccccEEE-EeccC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcC
Confidence            5789999999999 45433  46789999999998888 999999999999987777777777754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.00  E-value=1.1e-09  Score=77.49  Aligned_cols=54  Identities=31%  Similarity=0.405  Sum_probs=45.1

Q ss_pred             CCCCeeccEEEECccCcccc--ccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcc
Q psy12137          2 TINPEFHEKLTFYSVSETDL--SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS   56 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~--~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~   56 (224)
                      +.||.|||+|.| .++...+  ....|.|+|||.+.+++ ++||++.++|.++.....
T Consensus        44 ~~~P~Wne~f~f-~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~  100 (125)
T cd04051          44 GTNPTWNETLRF-PLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGAS  100 (125)
T ss_pred             CCCCCCCCEEEE-EcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccC
Confidence            689999999999 5655532  35789999999998888 999999999999976554

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.00  E-value=2e-09  Score=75.20  Aligned_cols=77  Identities=17%  Similarity=0.259  Sum_probs=54.5

Q ss_pred             CCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcccc
Q psy12137          3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEEC   81 (224)
Q Consensus         3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~   81 (224)
                      +||+|||+|.| .++..++....|.|.+||.+..++ .++|.+.+.  .+........|++|.+..           ...
T Consensus        40 ~~P~Wne~f~f-~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~-----------~~~  105 (117)
T cd08383          40 LNPFWGEEFVF-DDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALS--KLDLGQGKDEWFPLTPVD-----------PDS  105 (117)
T ss_pred             CCCcccceEEE-ecCCccccEEEEEEEEEecccCCCeeEEEEEEec--CcCCCCcceeEEECccCC-----------CCC
Confidence            79999999999 677766666789999999887666 777876655  444444455555554321           113


Q ss_pred             eeceEEEEEEEE
Q psy12137         82 WQHGKIFLTLCF   93 (224)
Q Consensus        82 ~~~g~l~i~~~~   93 (224)
                      ...|+|++.+.|
T Consensus       106 ~~~G~l~l~~~~  117 (117)
T cd08383         106 EVQGSVRLRARY  117 (117)
T ss_pred             CcCceEEEEEEC
Confidence            578999998875

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=98.98  E-value=8.8e-10  Score=78.87  Aligned_cols=51  Identities=37%  Similarity=0.529  Sum_probs=43.7

Q ss_pred             CCCCCeeccEEEECccCcc--ccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137          1 RTINPEFHEKLTFYSVSET--DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR   52 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~--~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~   52 (224)
                      +|+||+|||+|.| .+...  ......|.|.|||++.+++ ++||++.++|+++.
T Consensus        64 ~t~nP~wnE~f~f-~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          64 KTLFPLFDESFEF-NVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             CCCCCccCCEEEE-EechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence            5899999999999 46543  2346789999999999998 99999999999995

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=98.98  E-value=1.2e-09  Score=77.23  Aligned_cols=64  Identities=28%  Similarity=0.412  Sum_probs=51.1

Q ss_pred             CCCCCeeccEEEECccCcccc-ccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~-~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +++||+|||+|.| .++.... ....|.|+|||.+.+++ ++||++.++++++......+.|..+.+
T Consensus        43 ~t~nP~Wne~f~f-~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p  108 (124)
T cd04049          43 DGRNPEWNEKFKF-TVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP  108 (124)
T ss_pred             CCCCCcccceEEE-EecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence            3789999999999 4554422 25789999999999888 999999999999987666665565544

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=98.97  E-value=8.9e-10  Score=79.15  Aligned_cols=50  Identities=32%  Similarity=0.511  Sum_probs=44.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      +|+||+|||+|.| .++..++....|.|+|||++.+++ ++||++.+++...
T Consensus        61 ~t~nP~wne~f~f-~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          61 RTLNPYYNESFSF-EVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             CCCCCcccceEEE-ECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC
Confidence            5889999999999 688777777799999999999998 9999999999753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=98.97  E-value=3.5e-09  Score=75.87  Aligned_cols=78  Identities=24%  Similarity=0.310  Sum_probs=54.4

Q ss_pred             CCCCCee-ccEEEECccCccccccCeEEEEEEeCCCCC----CccceeEEeeccccCCCcccceeecccccccCCCcccc
Q psy12137          1 RTINPEF-HEKLTFYSVSETDLSLQSLHILVLDDDKYG----HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV   75 (224)
Q Consensus         1 ~t~nP~w-~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~----~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~   75 (224)
                      +|+||+| ||+|.| .+..    .+.|.|+|||++..+    +++||++.+++.++........   ...++++.+.   
T Consensus        54 ~tlnP~W~nE~f~f-~v~~----~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~---~~~~~~l~k~---  122 (137)
T cd08691          54 NTINPVWHREQFVF-VGLP----TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGD---QELSYTLGRR---  122 (137)
T ss_pred             CCCCCceEceEEEE-EcCC----CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCc---eEEEEECCcC---
Confidence            5899999 999999 4542    458999999987533    3899999999999965543321   2234444432   


Q ss_pred             cCcccceeceEEEEEE
Q psy12137         76 WGEEECWQHGKIFLTL   91 (224)
Q Consensus        76 ~~~~~~~~~g~l~i~~   91 (224)
                        .......|+|.+.+
T Consensus       123 --~~~s~v~G~~~l~~  136 (137)
T cd08691         123 --TPTDHVSGQLTFRF  136 (137)
T ss_pred             --CCCCcEEEEEEEEe
Confidence              12356789887765

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=98.95  E-value=1.4e-09  Score=79.12  Aligned_cols=52  Identities=25%  Similarity=0.441  Sum_probs=43.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      +++||+|||+|.|. +..... .+.|.|+|||+|..++ ++||++.++|.++...
T Consensus        55 ~t~nPvWNE~f~f~-v~~p~~-~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~  107 (151)
T cd04018          55 NSYNPEWNEQIVFP-EMFPPL-CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS  107 (151)
T ss_pred             CCCCCCcceEEEEE-eeCCCc-CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence            58999999999994 433222 5789999999999988 9999999999998654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04032 C2_Perforin C2 domain of Perforin

Probab=98.95  E-value=1.7e-09  Score=76.45  Aligned_cols=50  Identities=24%  Similarity=0.232  Sum_probs=41.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR   52 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~   52 (224)
                      +|+||+|||+|.|......  ..+.|.|+|||++.+++ ++||++.++|+...
T Consensus        68 ~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          68 NNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence            5799999999999422222  46799999999999988 99999999999765

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=98.95  E-value=8.2e-10  Score=79.11  Aligned_cols=48  Identities=38%  Similarity=0.634  Sum_probs=43.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN   49 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~   49 (224)
                      +++||+|||+|.| .++.+.+....|.|+|||++..++ ++||++.+++.
T Consensus        60 ~t~nP~wne~f~f-~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          60 NTLNPTYNEALVF-DVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             CCCCCcccceEEE-ECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence            5799999999999 687777777789999999999998 99999999977

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=98.94  E-value=4.5e-09  Score=76.07  Aligned_cols=51  Identities=33%  Similarity=0.599  Sum_probs=44.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~   55 (224)
                      +|+||+|||+|.| .++..   ...|.|+|||++.+++ ++||++.+++.++....
T Consensus        42 ~t~nP~WnE~f~f-~i~~~---~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          42 KNLNPVWNEELTL-SVPNP---MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             CCCCCeecccEEE-EecCC---CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence            5799999999999 45443   7789999999999998 99999999999986443

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=98.94  E-value=4e-09  Score=74.63  Aligned_cols=50  Identities=26%  Similarity=0.393  Sum_probs=42.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~   55 (224)
                      +|+||+|||+|.| .+.    ..+.|.|+|||++..++ ++||++.++|+++....
T Consensus        43 ~t~~P~Wne~f~~-~~~----~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~   93 (125)
T cd04021          43 KTSNPKWNEHFTV-LVT----PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNH   93 (125)
T ss_pred             CCCCCccccEEEE-EeC----CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhc
Confidence            4789999999999 454    25689999999999888 99999999999996543

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=98.94  E-value=2e-09  Score=73.79  Aligned_cols=50  Identities=38%  Similarity=0.470  Sum_probs=41.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~   55 (224)
                      +|.||+|||+|.|. +..  ...+.|.|.|||.+.  .++||++.++|.++....
T Consensus        41 ~t~nP~Wne~f~f~-v~~--~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~   90 (105)
T cd04050          41 RTNNPVWEEGFTFL-VRN--PENQELEIEVKDDKT--GKSLGSLTLPLSELLKEP   90 (105)
T ss_pred             CCCCCcccceEEEE-eCC--CCCCEEEEEEEECCC--CCccEEEEEEHHHhhccc
Confidence            57899999999994 543  235789999999985  689999999999997554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=98.93  E-value=1.6e-09  Score=77.70  Aligned_cols=47  Identities=28%  Similarity=0.446  Sum_probs=42.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeec
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPL   48 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l   48 (224)
                      +|+||+|||+|.| .++.+++....|.|.|||+|..++ ++||++.+..
T Consensus        60 ~t~nP~wnE~F~f-~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~  107 (135)
T cd08410          60 GTIDPFYNESFSF-KVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQ  107 (135)
T ss_pred             CCCCCccceeEEE-eCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcC
Confidence            5799999999999 688888877789999999999888 9999998664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=98.92  E-value=2.7e-09  Score=75.35  Aligned_cols=50  Identities=28%  Similarity=0.345  Sum_probs=42.3

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP   53 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~   53 (224)
                      +|+||+|||+|.|. +..  .....|.|+|||+|..++ ++||++.++|++...
T Consensus        43 ~t~nP~Wne~f~f~-~~~--~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          43 NTLNPVFGKMFELE-ATL--PGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF   93 (124)
T ss_pred             CCCCCccceEEEEE-ecC--CCCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence            57999999999994 432  236789999999999988 999999999998854

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.89  E-value=1.6e-08  Score=67.80  Aligned_cols=82  Identities=16%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137        100 LIVNLIKCTNLIPMD---SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus       100 l~v~i~~a~~L~~~~---~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      |.|+|..+|++...+   ..+.++|||.+++    +. .+.+|+.   +.||.|||.|.|.+  +.  ...+.|.|||+.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv----ed~~kaRTr~---srnd~WnE~F~i~V--dk--~nEiel~VyDk~   69 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKV----EDVERARTKP---SRNDRWNEDFEIPV--EK--NNEEEVIVYDKG   69 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEE----CCEEEEeccC---CCCCcccceEEEEe--cC--CcEEEEEEEeCC
Confidence            578999999998766   3578899999999    44 5888887   47999999999999  32  468999999986


Q ss_pred             CCCCCceeEEEEEecCCC
Q psy12137        176 YGKSNDYLGCLELCCNSK  193 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~~  193 (224)
                      . ...--+|..++.++..
T Consensus        70 ~-~~~~Pi~llW~~~sdi   86 (109)
T cd08689          70 G-DQPVPVGLLWLRLSDI   86 (109)
T ss_pred             C-CeecceeeehhhHHHH
Confidence            4 2345789999988753

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=98.88  E-value=2.1e-09  Score=76.86  Aligned_cols=61  Identities=26%  Similarity=0.396  Sum_probs=49.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      ++.||.|||+|.| .++..++....|.|.|||.+..++ ++||++.+++++  .......|.++.
T Consensus        60 ~~~~P~wne~f~f-~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~  121 (134)
T cd00276          60 GTLNPVFNEAFSF-DVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEML  121 (134)
T ss_pred             cCCCCeeeeeEEE-ECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHH
Confidence            4789999999999 688777767899999999998888 999999999998  334444444443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=98.87  E-value=4.5e-09  Score=76.64  Aligned_cols=54  Identities=37%  Similarity=0.614  Sum_probs=42.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceee
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCL   61 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~   61 (224)
                      +|+||.|||+|.|. +  .++....|.|+|||++   .++||++.++++++.. ...+.|+
T Consensus        98 ~tlnP~WnE~F~f~-v--~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~  151 (153)
T cd08676          98 QTLNPVWNETFRFE-V--EDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWF  151 (153)
T ss_pred             CCCCCccccEEEEE-e--ccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeE
Confidence            57999999999994 4  3334679999999998   7899999999999973 3344443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=98.86  E-value=6.1e-09  Score=73.12  Aligned_cols=50  Identities=28%  Similarity=0.424  Sum_probs=43.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      +++||.|||+|.| .+...   .+.|.|+|||++.+++ ++||++.++++++...
T Consensus        43 ~t~~P~Wne~f~~-~v~~~---~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~   93 (120)
T cd04045          43 NTLNPVWDEVLYV-PVTSP---NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK   93 (120)
T ss_pred             CCcCCccCceEEE-EecCC---CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC
Confidence            4789999999999 45443   5789999999999988 8999999999999755

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=98.85  E-value=6.5e-09  Score=74.13  Aligned_cols=60  Identities=32%  Similarity=0.473  Sum_probs=47.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +++||.|||+|.| .+...+ ..+.|.|.|||++..++ ++||++.++|+++... ....|++|
T Consensus        59 ~~~~P~wne~f~~-~~~~~~-~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L  119 (131)
T cd04026          59 KTLNPVWNETFTF-DLKPAD-KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKL  119 (131)
T ss_pred             CCCCCCccceEEE-eCCchh-cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEEC
Confidence            5789999999999 455444 35789999999998888 9999999999999643 34444444

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=98.82  E-value=6.6e-09  Score=71.76  Aligned_cols=52  Identities=29%  Similarity=0.403  Sum_probs=41.9

Q ss_pred             CCCCCeeccEEEECccCccccc----cCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLS----LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS   56 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~----~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~   56 (224)
                      +|+||+|| +|.|.   ..++.    ...|.|+|||++..++ ++||++.++++++.....
T Consensus        47 ~t~nP~Wn-~f~~~---~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~~~  103 (110)
T cd04047          47 NTLNPVWK-PFTIP---LQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSP  103 (110)
T ss_pred             cCCCCceE-EEEEE---HHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcCCC
Confidence            58999999 67774   33222    5789999999999988 999999999999974443

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG1326|consensus

Probab=98.82  E-value=6.7e-09  Score=92.51  Aligned_cols=88  Identities=27%  Similarity=0.474  Sum_probs=76.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCe--EeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK--YKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~--~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      -++|++++|-+|.+.|.+|.+|||+++.+    +++.  -+...+.+++||+|++.|.+..  .-+.+..+.++||++|.
T Consensus       614 LvrVyvv~A~~L~p~D~ng~adpYv~l~l----Gk~~~~d~~~yip~tlnPVfgkmfel~~--~lp~ek~l~v~vyd~D~  687 (1105)
T KOG1326|consen  614 LVRVYVVEAFSLQPSDGNGDADPYVKLLL----GKKRTLDRAHYIPNTLNPVFGKMFELEC--LLPFEKDLIVEVYDHDL  687 (1105)
T ss_pred             eEEEEEEEeeeccccCCCCCcCceeeeee----ccchhhhhhhcCcCCCCcHHHHHHHhhc--ccchhhcceeEEEEeec
Confidence            46799999999999999999999999998    5543  5777888999999999988775  23445789999999999


Q ss_pred             CCCCceeEEEEEecCC
Q psy12137        177 GKSNDYLGCLELCCNS  192 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~  192 (224)
                      .++++.||+..+++.+
T Consensus       688 ~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  688 EAQDEKIGETTIDLEN  703 (1105)
T ss_pred             ccccchhhceehhhhh
Confidence            9999999999999884

>KOG0696|consensus

Probab=98.81  E-value=2.7e-09  Score=87.62  Aligned_cols=51  Identities=33%  Similarity=0.557  Sum_probs=45.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP   53 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~   53 (224)
                      .||||+|||+|.| .+.+.|- .+.|.|+|||+|+.+| +|+|..++.++++..
T Consensus       226 ~~LNP~wNEtftf-~Lkp~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K  277 (683)
T KOG0696|consen  226 ATLNPVWNETFTF-KLKPSDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQK  277 (683)
T ss_pred             hhcCccccceeEE-ecccccc-cceeEEEEecccccccccccceecccHHHHhh
Confidence            3799999999999 6766665 7899999999999999 999999999999853

>KOG1328|consensus

Probab=98.81  E-value=1e-09  Score=94.83  Aligned_cols=111  Identities=32%  Similarity=0.598  Sum_probs=88.8

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCC---------------------------eEeeeeeeCCCCCee
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR---------------------------KYKTGVKWKTLNPIF  149 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~---------------------------~~~T~~~~~~~~p~~  149 (224)
                      ..-+.|-+.+|+||...+.+|.+|||+...+.+...+.                           .+-|+++++++||.|
T Consensus       113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW  192 (1103)
T KOG1328|consen  113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW  192 (1103)
T ss_pred             cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence            44566778899999999999999999998876533221                           256788899999999


Q ss_pred             ceEEEEEeecCcccccEEEEEEEECCCC---------------------------------CC---CceeEEEEEecCCC
Q psy12137        150 NEEFAIETKITELSKQTLVITVWDKDYG---------------------------------KS---NDYLGCLELCCNSK  193 (224)
Q Consensus       150 ~e~f~f~~~~~~~~~~~l~i~v~~~~~~---------------------------------~~---~~~lG~~~l~l~~~  193 (224)
                      +|.|.|.+  +++....+.+.|||+|.-                                 +.   |+|+|.+.|++...
T Consensus       193 ~EkF~F~I--eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei  270 (1103)
T KOG1328|consen  193 SEKFQFTI--EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI  270 (1103)
T ss_pred             hhheeeeh--hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence            99999999  788888999999998732                                 33   78999999999985


Q ss_pred             C-CccchhhhhhcCCCc
Q psy12137        194 G-DRLRHWVDMMKYPDH  209 (224)
Q Consensus       194 ~-~~~~~w~~l~~~~~~  209 (224)
                      . .++++|++|-.....
T Consensus       271 P~~Gld~WFkLepRS~~  287 (1103)
T KOG1328|consen  271 PPDGLDQWFKLEPRSDK  287 (1103)
T ss_pred             CcchHHHHhccCccccc
Confidence            4 788888888654443

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=98.81  E-value=2.1e-08  Score=69.31  Aligned_cols=45  Identities=24%  Similarity=0.524  Sum_probs=36.6

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeC-------CCCCC-ccceeEEeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDD-------DKYGH-DFLGEARFPLNR   50 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~-------d~~~~-~~lG~~~i~l~~   50 (224)
                      +|+||+|||+|+| .++    ..+.|+|.|||.       |..++ +.||.+.+.|..
T Consensus        40 ~TlnPvWnE~F~i-~l~----~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          40 DTTEPNWNEEFEI-ELE----GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             CCCCCccceEEEE-EeC----CCCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence            5899999999999 464    367999999998       45677 899888887753

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.77  E-value=9.9e-09  Score=72.85  Aligned_cols=49  Identities=14%  Similarity=0.246  Sum_probs=41.9

Q ss_pred             CCC-CCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          1 RTI-NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         1 ~t~-nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      +|+ ||+|||+|.| .|+.++. ...|.|.|||++..++ ++||++.+.....
T Consensus        60 ~t~~~P~fNEsF~F-dv~~~~~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          60 SSNGQVKWGETMIF-PVTQQEH-GIQFLIKLYSRSSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             CCCCCceecceEEE-eCCchhh-eeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence            354 6999999999 7888754 6789999999999889 9999999998764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>KOG1013|consensus

Probab=98.68  E-value=1.2e-09  Score=86.53  Aligned_cols=114  Identities=28%  Similarity=0.384  Sum_probs=99.5

Q ss_pred             ccceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEE-
Q psy12137         79 EECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-  156 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~-  156 (224)
                      ......|.+.+.+.|......+.+++.+|.+|.+++.++..|||++..+.+..++ .+.+|++..++.||.|+|+.++. 
T Consensus        74 ~~at~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~  153 (362)
T KOG1013|consen   74 DPATTLGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEG  153 (362)
T ss_pred             chhhhccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecc
Confidence            3346789999999999999999999999999999999999999999999887766 67899999999999999998887 


Q ss_pred             eecCcccccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137        157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       157 ~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~  192 (224)
                      +..+......+.+.+.+.+.+..++++|+..+++.-
T Consensus       154 i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkK  189 (362)
T KOG1013|consen  154 ITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKK  189 (362)
T ss_pred             cccchhhhhhhheeeccCcccccccCcccchhhhhc
Confidence            554555556788899999988889999999988764

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=98.64  E-value=7.8e-08  Score=68.21  Aligned_cols=53  Identities=26%  Similarity=0.411  Sum_probs=45.7

Q ss_pred             CCCC--CeeccEEEECccCc---------------------cccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          1 RTIN--PEFHEKLTFYSVSE---------------------TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         1 ~t~n--P~w~e~f~f~~v~~---------------------~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      |++|  |.||+.|.|. ++.                     +.+....|.|+|||.|.+++ ++||++.++|..+..+
T Consensus        48 rslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~  124 (133)
T cd08374          48 RSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP  124 (133)
T ss_pred             ecCCCCcEEeEEEEEe-eecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence            5788  9999999994 555                     56677899999999999999 9999999999988544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=98.63  E-value=1.6e-07  Score=66.52  Aligned_cols=73  Identities=30%  Similarity=0.492  Sum_probs=50.6

Q ss_pred             CCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcccc
Q psy12137          3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEEC   81 (224)
Q Consensus         3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~   81 (224)
                      +||+|||+|.| .+...  ....|.|.|||.+.. + ++||++.+++.++....   .+.++.+..           ...
T Consensus        54 ~~P~w~e~f~f-~~~~~--~~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~-----------~~~  115 (128)
T cd00275          54 FNPVWNETFEF-DVTVP--ELAFLRFVVYDEDSG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK-----------GEP  115 (128)
T ss_pred             cCCccCCcEEE-EEeCC--CeEEEEEEEEeCCCC-CCcEeEEEEEEhHHhcCce---EEEEecCCC-----------CCC
Confidence            49999999999 44433  245799999999988 7 99999999999984322   233443210           112


Q ss_pred             eeceEEEEEEEE
Q psy12137         82 WQHGKIFLTLCF   93 (224)
Q Consensus        82 ~~~g~l~i~~~~   93 (224)
                      ...|.|.+.+..
T Consensus       116 ~~~~~l~v~~~~  127 (128)
T cd00275         116 LELSTLFVHIDI  127 (128)
T ss_pred             CcceeEEEEEEE
Confidence            456788777754

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>KOG2060|consensus

Probab=98.63  E-value=2.3e-08  Score=80.60  Aligned_cols=124  Identities=22%  Similarity=0.326  Sum_probs=94.6

Q ss_pred             eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCC-CCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeec
Q psy12137         82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  159 (224)
Q Consensus        82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~-~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~  159 (224)
                      ...|.|++.+  ....+.+.|.|++|++|..... ...++|||+|+++..+.. .+.+|+..+++..|.|-....|.-+ 
T Consensus       255 P~mg~iq~~~--~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-  331 (405)
T KOG2060|consen  255 PNMGDIQIAL--MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-  331 (405)
T ss_pred             cccccchhhh--hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-
Confidence            4566666655  3468999999999999976543 237899999999865433 7789999999999999888888764 


Q ss_pred             CcccccEEEEEEE-ECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137        160 TELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  221 (224)
Q Consensus       160 ~~~~~~~l~i~v~-~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~  221 (224)
                        +....|.+.+| |+.++..+.|+|.+.+-+.+++.           ....+.+||+|.+..
T Consensus       332 --p~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~l-----------s~~~~igwyKlfgss  381 (405)
T KOG2060|consen  332 --PPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNL-----------SSSPVIGWYKLFGSS  381 (405)
T ss_pred             --CCccEEEEEEeccccccchHHHhhHHHHHhhhhcc-----------ccccceeeeeccCCc
Confidence              33578999998 57788888999999998876441           233678888888653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.61  E-value=6.9e-08  Score=93.44  Aligned_cols=77  Identities=21%  Similarity=0.312  Sum_probs=58.0

Q ss_pred             CCCCCeeccEEEECccCccccc-cCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~-~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      ||.||+|||+|.|. +  ++++ ...|.|+|||+|.++++.||++.|++.++.......-|+++.+              
T Consensus      2020 ~~~nP~Wne~f~~~-~--~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-------------- 2082 (2102)
T PLN03200       2020 HSSSPEWKEGFTWA-F--DSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-------------- 2082 (2102)
T ss_pred             CCCCCCcccceeee-e--cCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc--------------
Confidence            68999999999984 3  3322 4679999999999977999999999999987776655555532              


Q ss_pred             cceeceE---EEEEEEEe
Q psy12137         80 ECWQHGK---IFLTLCFS   94 (224)
Q Consensus        80 ~~~~~g~---l~i~~~~~   94 (224)
                      .....|+   |++-+.+.
T Consensus      2083 ~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2083 ESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             ccccCCCcceEEEEEEec
Confidence            1245666   77766654

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.59  E-value=1.7e-07  Score=64.86  Aligned_cols=107  Identities=14%  Similarity=0.223  Sum_probs=75.0

Q ss_pred             EEEEEEEeecCCCCC-----------C--CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEee--------
Q psy12137        100 LIVNLIKCTNLIPMD-----------S--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETK--------  158 (224)
Q Consensus       100 l~v~i~~a~~L~~~~-----------~--~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~--------  158 (224)
                      |.|.|++|.+|+...           .  .-.-++||++.+..-.++..++|+++.++-.|.|+..+.|.++        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            467888888885221           0  1124789999975444458899999999999999999999864        


Q ss_pred             -----cCcccccEEEEEEEECCCC----------CCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137        159 -----ITELSKQTLVITVWDKDYG----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL  217 (224)
Q Consensus       159 -----~~~~~~~~l~i~v~~~~~~----------~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l  217 (224)
                           .+.+....+.++||+....          .+|-+||.+.|++..          |+ ..+..|++||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~----------Ll-~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRD----------LL-TKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHH----------Hh-hcccCccccccC
Confidence                 1223347899999986532          234489999999864          22 234468888875

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1011|consensus

Probab=98.46  E-value=2.9e-06  Score=73.27  Aligned_cols=128  Identities=17%  Similarity=0.167  Sum_probs=96.7

Q ss_pred             ccceeceEEEEEEEEeCC----CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC---CeEeeeeeeCCCCCeece
Q psy12137         79 EECWQHGKIFLTLCFSTK----KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKWKTLNPIFNE  151 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~~~~----~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~---~~~~T~~~~~~~~p~~~e  151 (224)
                      ......|++.+.+..+..    ...++|.|+.|.+|.... .|.-.|||.+.+.++.-.   .++.|+.+.++-.|.|||
T Consensus      1102 gvedpvgevsvqvdlfthpgtgehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNE 1180 (1283)
T KOG1011|consen 1102 GVEDPVGEVSVQVDLFTHPGTGEHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNE 1180 (1283)
T ss_pred             CCCCCCceEEEEEEeecCCCCCcceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCc
Confidence            334567999888887764    347999999999998753 467789999998764422   567888888889999999


Q ss_pred             EEEEEeecCc-ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        152 EFAIETKITE-LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       152 ~f~f~~~~~~-~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      +|.|-+..+. +....|.|.|.|+...+.|+.+|-+.+.|.+..            ....-+.|.||..
T Consensus      1181 tF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va------------~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1181 TFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA------------DKGSCACWVPLGR 1237 (1283)
T ss_pred             eeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh------------hcCceeEeeeccc
Confidence            9999976543 333568888988887777889999999998632            1235666776653

>PLN02223 phosphoinositide phospholipase C

Probab=98.41  E-value=3e-07  Score=78.64  Aligned_cols=51  Identities=24%  Similarity=0.395  Sum_probs=42.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      |+.||+|||+|.| .|...++  ..|+|+|+|+|..++ +|+|++.+|+..+...
T Consensus       460 Ng~nPvWne~F~F-~i~~PEL--AlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~G  511 (537)
T PLN02223        460 NEWKPTWGEEFTF-PLTYPDL--ALISFEVYDYEVSTADAFCGQTCLPVSELIEG  511 (537)
T ss_pred             CCcCceecceeEE-EEEccCc--eEEEEEEEecCCCCCCcEEEEEecchHHhcCC
Confidence            5789999999999 4555543  479999999998887 9999999999999544

>cd00030 C2 C2 domain

Probab=98.37  E-value=1.1e-06  Score=58.57  Aligned_cols=48  Identities=38%  Similarity=0.727  Sum_probs=41.6

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR   52 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~   52 (224)
                      ++||.|||.|.| .+...  ....|.|.||+.+..+. .+||.+.+++.++.
T Consensus        42 ~~~P~w~~~~~~-~~~~~--~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~   90 (102)
T cd00030          42 TLNPVWNETFEF-PVLDP--ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL   90 (102)
T ss_pred             CCCCcccceEEE-EccCC--CCCEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence            579999999999 45442  36789999999998887 99999999999986

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=98.36  E-value=1.1e-06  Score=58.80  Aligned_cols=50  Identities=38%  Similarity=0.717  Sum_probs=41.6

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      +.||.|||+|.|. +....  ...|.|.|||.+..+. .++|.+.+++.++...
T Consensus        45 ~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~   95 (101)
T smart00239       45 TLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG   95 (101)
T ss_pred             CCCCcccceEEEE-ecCcc--cCEEEEEEEecCCccCCceeEEEEEEHHHcccC
Confidence            4699999999994 44432  7899999999998877 9999999999888544

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=98.28  E-value=1.2e-06  Score=56.87  Aligned_cols=42  Identities=36%  Similarity=0.745  Sum_probs=34.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEE
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR   45 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~   45 (224)
                      ++.+|.|||+|.| .+...+.  ..|.|+|||.+..++ .+||+|.
T Consensus        43 ~~~~P~w~e~~~~-~~~~~~~--~~l~~~V~~~~~~~~~~~iG~~~   85 (85)
T PF00168_consen   43 NTSNPVWNEEFEF-PLDDPDL--DSLSFEVWDKDSFGKDELIGEVK   85 (85)
T ss_dssp             SBSSEEEEEEEEE-EESHGCG--TEEEEEEEEETSSSSEEEEEEEE
T ss_pred             ccccceeeeeeee-eeecccc--cceEEEEEECCCCCCCCEEEEEC
Confidence            3679999999999 4555544  449999999999998 9999984

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN02952 phosphoinositide phospholipase C

Probab=98.26  E-value=3.4e-06  Score=73.65  Aligned_cols=52  Identities=31%  Similarity=0.544  Sum_probs=43.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~   55 (224)
                      +|.||+|||+|.| .+...++  ..|+|.|+|+|..++ +++|++.+||..+...-
T Consensus       522 nN~nPvWnE~F~F-~i~~PEL--Allrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy  574 (599)
T PLN02952        522 DNWYPAWNEEFSF-PLTVPEL--ALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI  574 (599)
T ss_pred             CCCCcccCCeeEE-EEEcCCc--cEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc
Confidence            3589999999999 4555544  479999999998888 99999999999996543

>KOG0169|consensus

Probab=98.23  E-value=3.4e-06  Score=74.04  Aligned_cols=51  Identities=31%  Similarity=0.600  Sum_probs=44.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      |+-||.|+|+|+| .+...++.  -|+|.|+|+|..++ +|+|+..+|+..+.+.
T Consensus       667 NgfnP~W~e~f~F-~l~vPELA--liRF~V~d~d~~~~ddF~GQ~tlP~~~L~~G  718 (746)
T KOG0169|consen  667 NGFNPIWDEEFEF-QLSVPELA--LIRFEVHDYDYIGKDDFIGQTTLPVSELRQG  718 (746)
T ss_pred             CCcCcccCCeEEE-EEecccee--EEEEEEEecCCCCcccccceeeccHHHhhCc
Confidence            4679999999999 67777664  89999999999998 9999999999999644

>PLN02352 phospholipase D epsilon

Probab=98.22  E-value=5.4e-06  Score=73.84  Aligned_cols=98  Identities=13%  Similarity=0.182  Sum_probs=64.5

Q ss_pred             CCEEEEEEEEeecCCCC----CCC-CCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEE
Q psy12137         97 KRALIVNLIKCTNLIPM----DSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT  170 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~----~~~-g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~  170 (224)
                      .|.|.++|++|+.+...    ... ...+|||.+.+    ++ ...+|   .+..||.|+|.|...+...  ....+.|+
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~----~~~~v~rt---~~~~~p~w~e~f~i~~ah~--~~~~~~f~   79 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI----GNKKVAKT---SHEYDRVWNQTFQILCAHP--LDSTITIT   79 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEe----CCcEEecC---CCCCCCccccceeEEeeee--cCCcEEEE
Confidence            46677777777633221    111 12399999998    45 56677   4566999999999888543  23579999


Q ss_pred             EEECCCCCCCceeEEEEEecCCC--CCc-cchhhhhhcCCC
Q psy12137        171 VWDKDYGKSNDYLGCLELCCNSK--GDR-LRHWVDMMKYPD  208 (224)
Q Consensus       171 v~~~~~~~~~~~lG~~~l~l~~~--~~~-~~~w~~l~~~~~  208 (224)
                      |.|     .-.+||.+.|++...  |.. .+.|+++++..+
T Consensus        80 vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~  115 (758)
T PLN02352         80 LKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENG  115 (758)
T ss_pred             Eec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCC
Confidence            987     257999999998752  222 444555544433

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.20  E-value=1.7e-06  Score=75.45  Aligned_cols=51  Identities=24%  Similarity=0.438  Sum_probs=42.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      |+.||+|||+|.|. +...++  ..|+|+|+|+|...+ +|+|+..+|+..+...
T Consensus       521 n~~nP~Wneef~F~-l~vPEL--AllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~G  572 (598)
T PLN02230        521 DTWTPIWNKEFIFP-LAVPEL--ALLRVEVHEHDINEKDDFGGQTCLPVSEIRQG  572 (598)
T ss_pred             CCCCCccCCeeEEE-EEcCce--eEEEEEEEECCCCCCCCEEEEEEcchHHhhCc
Confidence            56899999999994 555544  489999999998777 9999999999999543

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.09  E-value=9.2e-07  Score=57.01  Aligned_cols=48  Identities=21%  Similarity=0.330  Sum_probs=43.1

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR   52 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~   52 (224)
                      ..||+|+|+|.| .+....++...|.|.||.  ...| ..||.|.+.|.++-
T Consensus        45 s~d~~f~ETFVF-qi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~g   93 (103)
T cd08684          45 SNDIEFMETFVF-AIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLS   93 (103)
T ss_pred             CCChhHHHHHHH-HHHHhhccceEEEEEeec--cCCccceeeEEEeecccCC
Confidence            468999999999 799999999999999999  4677 99999999999873

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.04  E-value=5.4e-06  Score=72.22  Aligned_cols=51  Identities=24%  Similarity=0.344  Sum_probs=42.3

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      +|.||+|||+|.|. +...++  ..|+|.|+|+|..+. +|||++.+|+..+...
T Consensus       504 nn~nP~W~e~f~F~-i~~PeL--AllRf~V~d~D~~~~ddfigq~~lPv~~Lr~G  555 (581)
T PLN02222        504 DNWIPAWDEVFEFP-LTVPEL--ALLRLEVHEYDMSEKDDFGGQTCLPVWELSQG  555 (581)
T ss_pred             CCCCcccCCeeEEE-EEcCce--eEEEEEEEECCCCCCCcEEEEEEcchhhhhCc
Confidence            35799999999994 555544  589999999998777 9999999999999543

>KOG1031|consensus

Probab=97.95  E-value=1.2e-05  Score=68.76  Aligned_cols=84  Identities=21%  Similarity=0.412  Sum_probs=60.5

Q ss_pred             CCCCCeeccE-EEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc-c---cceeecccccccCCCccc
Q psy12137          1 RTINPEFHEK-LTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI-S---RDLCLNLCKHYPVPREEE   74 (224)
Q Consensus         1 ~t~nP~w~e~-f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~-~---~~~~~~l~~~~~l~~~~~   74 (224)
                      |+|||.||.. |.| .|+..+++.+.|.|.+.|+|+++. +.||++.|++..+-.+. .   ...-..+..|++.-    
T Consensus        45 kslnp~wnsdwfkf-evddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pif----  119 (1169)
T KOG1031|consen   45 KSLNPQWNSDWFKF-EVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIF----  119 (1169)
T ss_pred             hhcCCcccccceEE-ecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecc----
Confidence            6899999976 667 899999999999999999999999 99999999998873211 1   11112344455443    


Q ss_pred             ccCcccceeceEEEEEEE
Q psy12137         75 VWGEEECWQHGKIFLTLC   92 (224)
Q Consensus        75 ~~~~~~~~~~g~l~i~~~   92 (224)
                         +.-+..+|+|.+-+.
T Consensus       120 ---dtihgirgeinvivk  134 (1169)
T KOG1031|consen  120 ---DTIHGIRGEINVIVK  134 (1169)
T ss_pred             ---eecccccceeEEEEE
Confidence               112467788766554

>PLN02228 Phosphoinositide phospholipase C

Probab=97.93  E-value=3.9e-05  Score=66.77  Aligned_cols=50  Identities=26%  Similarity=0.432  Sum_probs=41.8

Q ss_pred             CCCCCee-ccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC
Q psy12137          1 RTINPEF-HEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP   53 (224)
Q Consensus         1 ~t~nP~w-~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~   53 (224)
                      ++.||+| ||+|.|. +...++  ..|+|.|+|+|..+. ++||++.+|+..+..
T Consensus       483 n~~nP~W~~e~f~F~-~~~pEL--A~lRf~V~D~d~~~~d~figq~~lPv~~Lr~  534 (567)
T PLN02228        483 DQWFPIWGNDEFLFQ-LRVPEL--ALLWFKVQDYDNDTQNDFAGQTCLPLPELKS  534 (567)
T ss_pred             CCCCceECCCeEEEE-EEcCce--eEEEEEEEeCCCCCCCCEEEEEEcchhHhhC
Confidence            3579999 9999994 555544  489999999998877 999999999999953

>KOG1264|consensus

Probab=97.76  E-value=2.3e-05  Score=69.35  Aligned_cols=49  Identities=27%  Similarity=0.671  Sum_probs=42.7

Q ss_pred             CCCCCeec-cEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137          1 RTINPEFH-EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR   52 (224)
Q Consensus         1 ~t~nP~w~-e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~   52 (224)
                      |.+||+|| |+|.| .|...  ....|+|.|||-|-++. .|||++..|+..+.
T Consensus      1111 NGlnPiWn~e~ftF-eI~nP--e~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik 1161 (1267)
T KOG1264|consen 1111 NGLNPIWNPEKFTF-EIYNP--EFAFLRFVVYEEDMFSDPNFLAQATYPVKAIK 1161 (1267)
T ss_pred             CCCCCCCCCcceEE-EeeCC--ceEEEEEEEecccccCCcceeeeeecchhhhh
Confidence            57999999 99999 45444  45689999999999999 99999999999885

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.67  E-value=0.00052  Score=51.18  Aligned_cols=94  Identities=13%  Similarity=0.176  Sum_probs=67.2

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEE
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWD  173 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~  173 (224)
                      ...+.|+|+.+.++..  .....+.||++.+..++..  ....|+.......+.|||.+.|++...++. ++.|.|+||+
T Consensus         7 ~~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~   84 (173)
T cd08693           7 EEKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYE   84 (173)
T ss_pred             CCCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence            3467899999999875  2335678899887764322  344666655556799999999997666665 4679999998


Q ss_pred             CCCCC----------------CCceeEEEEEecCC
Q psy12137        174 KDYGK----------------SNDYLGCLELCCNS  192 (224)
Q Consensus       174 ~~~~~----------------~~~~lG~~~l~l~~  192 (224)
                      .....                ....||.+.+.|-+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             ecccccccccccccccccccCcceEEEEEeEEEEc
Confidence            65321                23689999999875

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PLN02270 phospholipase D alpha

Probab=97.65  E-value=0.00015  Score=65.17  Aligned_cols=79  Identities=18%  Similarity=0.285  Sum_probs=60.0

Q ss_pred             CCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCcccce
Q psy12137          3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECW   82 (224)
Q Consensus         3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~   82 (224)
                      .||.|||.|.. .+.-.   ...|.|.|-|.|.++..+||.+.||++++......+-|+++....          -....
T Consensus        71 ~~p~w~e~f~i-~~ah~---~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----------~~p~~  136 (808)
T PLN02270         71 KNPRWYESFHI-YCAHM---ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDND----------KNPIH  136 (808)
T ss_pred             CCCccccceEE-eeccC---cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCC----------CCcCC
Confidence            59999999998 44444   578999999999888899999999999998776666666654321          01123


Q ss_pred             eceEEEEEEEEeC
Q psy12137         83 QHGKIFLTLCFST   95 (224)
Q Consensus        83 ~~g~l~i~~~~~~   95 (224)
                      ...+|++++.|.+
T Consensus       137 ~~~~~~~~~~f~~  149 (808)
T PLN02270        137 GGSKIHVKLQYFE  149 (808)
T ss_pred             CCCEEEEEEEEEE
Confidence            3458999999887

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.63  E-value=0.00086  Score=49.17  Aligned_cols=92  Identities=13%  Similarity=0.078  Sum_probs=65.2

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEE
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWD  173 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~  173 (224)
                      ...+.|+|+.+.++...   ...+.||++.+..++..  ....|+.+.. .++.|||.+.|++...++. ++.|.|+||+
T Consensus         7 ~~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~   82 (158)
T cd08398           7 NSNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS   82 (158)
T ss_pred             CCCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence            34678999999988753   24689999988764322  2334544443 5799999999997666665 4679999998


Q ss_pred             CCCCC----CCceeEEEEEecCC
Q psy12137        174 KDYGK----SNDYLGCLELCCNS  192 (224)
Q Consensus       174 ~~~~~----~~~~lG~~~l~l~~  192 (224)
                      ....+    ....+|.+.++|-+
T Consensus        83 ~~~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          83 VKGRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             EecccCCCCceEEEEEEEEEEEC
Confidence            65321    12469999999875

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PLN02964 phosphatidylserine decarboxylase

Probab=97.61  E-value=0.00019  Score=63.59  Aligned_cols=87  Identities=17%  Similarity=0.214  Sum_probs=70.0

Q ss_pred             eCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEE
Q psy12137         94 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD  173 (224)
Q Consensus        94 ~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~  173 (224)
                      ..-.|.+.++++.|+    ++   ..|+|..+-..   +.+.++|...+++.+|+||+...|.+.+..+.  ...|.|||
T Consensus        50 ~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~---g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~  117 (644)
T PLN02964         50 EDFSGIALLTLVGAE----MK---FKDKWLACVSF---GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISVFE  117 (644)
T ss_pred             ccccCeEEEEeehhh----hc---cCCcEEEEEEe---cceeeeeccccccCCcccchhhceEeccCCcc--eEEEEEEe
Confidence            344778888888886    22   34887555433   67999999999999999999999998666554  56999999


Q ss_pred             CCCCCCCceeEEEEEecCC
Q psy12137        174 KDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       174 ~~~~~~~~~lG~~~l~l~~  192 (224)
                      .+.++.++++|.+.+++..
T Consensus       118 ~~~~s~n~lv~~~e~~~t~  136 (644)
T PLN02964        118 TNRLSKNTLVGYCELDLFD  136 (644)
T ss_pred             cCCCCHHHhhhheeecHhh
Confidence            9999999999999998764

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.45  E-value=0.00087  Score=49.26  Aligned_cols=76  Identities=22%  Similarity=0.180  Sum_probs=57.1

Q ss_pred             CCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137        117 GFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       117 g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~l~l~~  192 (224)
                      ..++.||++.+..++..  ....|+.+.-+..+.|||...|++...++. ++.|.|+||+....++...+|.+.++|-+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            35688999988764421  234566665566789999999998776665 46799999998765566799999999875

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.42  E-value=0.0016  Score=47.74  Aligned_cols=94  Identities=13%  Similarity=0.095  Sum_probs=63.8

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEEC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDK  174 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~~  174 (224)
                      ..+.|.+....++... .....+.||++.+..++..  ....|.......++.|||...|++...++. ++.|.|+||+.
T Consensus         8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            4566777777776541 1234678888887764421  233444444346799999999996555554 46799999997


Q ss_pred             CCCC--CCceeEEEEEecCC
Q psy12137        175 DYGK--SNDYLGCLELCCNS  192 (224)
Q Consensus       175 ~~~~--~~~~lG~~~l~l~~  192 (224)
                      +..+  .+..||.+.+++-+
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd  106 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFD  106 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEc
Confidence            7543  45799999999875

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.32  E-value=0.0019  Score=53.16  Aligned_cols=100  Identities=15%  Similarity=0.241  Sum_probs=75.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCc-----ccccEEEEEEEEC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE-----LSKQTLVITVWDK  174 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~-----~~~~~l~i~v~~~  174 (224)
                      +.|.|++|+|++...   .-...+..++    .+....|.....+..|.||......+....     ++...|++++|..
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~----ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~   74 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKF----NGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV   74 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEe----CCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence            578899999998652   2356777777    568889999999999999988888754333     3346899999998


Q ss_pred             C-CCCCCceeEEEEEecCCC---C----CccchhhhhhcC
Q psy12137        175 D-YGKSNDYLGCLELCCNSK---G----DRLRHWVDMMKY  206 (224)
Q Consensus       175 ~-~~~~~~~lG~~~l~l~~~---~----~~~~~w~~l~~~  206 (224)
                      + ..+..+.+|.+.++|.+.   .    ....+||+|++.
T Consensus        75 ~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~  114 (340)
T PF12416_consen   75 DGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS  114 (340)
T ss_pred             cCCCCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence            8 556778999999999875   2    133446665554

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.22  E-value=0.0024  Score=47.59  Aligned_cols=96  Identities=16%  Similarity=0.139  Sum_probs=66.5

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeee----CCCCCeeceEEEEEeecCccc-ccEEEE
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKW----KTLNPIFNEEFAIETKITELS-KQTLVI  169 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~----~~~~p~~~e~f~f~~~~~~~~-~~~l~i  169 (224)
                      ...+.|+|..+.+++........+-||.+.+..++..  ....|+...    ....+.|||.+.|++...++. ++.|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3457888999999987654445789999988764322  223443221    123577999999997655554 467999


Q ss_pred             EEEECCCCC---------CCceeEEEEEecCC
Q psy12137        170 TVWDKDYGK---------SNDYLGCLELCCNS  192 (224)
Q Consensus       170 ~v~~~~~~~---------~~~~lG~~~l~l~~  192 (224)
                      +||+....+         .+..||.+.++|-+
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEc
Confidence            999866543         35699999999875

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>KOG1265|consensus

Probab=97.16  E-value=0.00094  Score=60.04  Aligned_cols=93  Identities=19%  Similarity=0.356  Sum_probs=70.0

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC---CeEeeeeee-CCCCCeec-eEEEEE-eecCcccccEEEEE
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKW-KTLNPIFN-EEFAIE-TKITELSKQTLVIT  170 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~---~~~~T~~~~-~~~~p~~~-e~f~f~-~~~~~~~~~~l~i~  170 (224)
                      .+.+.|+|+.|.-|...+    ...||.|.+.+-...   +.++|++.. ++.||+|+ |.|+|. +-..++  +.|.|.
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRia  775 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIA  775 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeee
Confidence            567899999999886654    358999998643222   567787765 46899998 588998 322344  589999


Q ss_pred             EEECCCCCCCceeEEEEEecCCCCCccch
Q psy12137        171 VWDKDYGKSNDYLGCLELCCNSKGDRLRH  199 (224)
Q Consensus       171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~  199 (224)
                      ||+.+    ..+||+=.++++....+++|
T Consensus       776 vyeEg----gK~ig~RIlpvd~l~~GYrh  800 (1189)
T KOG1265|consen  776 VYEEG----GKFIGQRILPVDGLNAGYRH  800 (1189)
T ss_pred             eeccC----CceeeeeccchhcccCccee
Confidence            99863    46999999999987777766

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=97.12  E-value=0.014  Score=43.97  Aligned_cols=59  Identities=14%  Similarity=0.176  Sum_probs=48.1

Q ss_pred             CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC--CCceeEEEEEecCC
Q psy12137        134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK--SNDYLGCLELCCNS  192 (224)
Q Consensus       134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~--~~~~lG~~~l~l~~  192 (224)
                      ..++|.+...+.+|.|+|++.+.++.+...+..|.|++++...-.  ....+|-+.++|-.
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            467888999999999999999999988888899999998754321  12579999999854

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=97.08  E-value=0.016  Score=43.76  Aligned_cols=58  Identities=17%  Similarity=0.222  Sum_probs=47.4

Q ss_pred             CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC----CCCceeEEEEEecC
Q psy12137        134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG----KSNDYLGCLELCCN  191 (224)
Q Consensus       134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~----~~~~~lG~~~l~l~  191 (224)
                      ...+|.+...+.+|.|+|++.+.++.+...+..|.|++++....    ..+..+|-+.++|-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            57788888889999999999999998888889999999885421    11247899999985

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.07  E-value=0.0083  Score=44.82  Aligned_cols=94  Identities=16%  Similarity=0.142  Sum_probs=61.0

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccc-cEEEEEEEECC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSK-QTLVITVWDKD  175 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~-~~l~i~v~~~~  175 (224)
                      ..++|+|..+..+ ..+.......||++.+..++.- ....|.....+.++.|||.+.|++...++.. +.|.|+||+..
T Consensus        10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            4567777777633 3323333457888877653211 3335666666677999999999977666654 67999999853


Q ss_pred             CCC----------------CCceeEEEEEecCC
Q psy12137        176 YGK----------------SNDYLGCLELCCNS  192 (224)
Q Consensus       176 ~~~----------------~~~~lG~~~l~l~~  192 (224)
                      ..+                .+..||.+.+.|-.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEc
Confidence            211                24578888888764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PLN02352 phospholipase D epsilon

Probab=96.97  E-value=0.0021  Score=57.78  Aligned_cols=76  Identities=12%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcc-cceeecccccccCCCcccccCccc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS-RDLCLNLCKHYPVPREEEVWGEEE   80 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~-~~~~~~l~~~~~l~~~~~~~~~~~   80 (224)
                      ..||.|||.|... +.-.  .+..|.|.|-|    +..+||.+.||++++..... .+-|+++....         +-  
T Consensus        55 ~~~p~w~e~f~i~-~ah~--~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~---------~~--  116 (758)
T PLN02352         55 EYDRVWNQTFQIL-CAHP--LDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN---------GK--  116 (758)
T ss_pred             CCCCccccceeEE-eeee--cCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC---------CC--
Confidence            4599999999983 3322  23579999988    34999999999999976544 55555554311         01  


Q ss_pred             ceeceEEEEEEEEeC
Q psy12137         81 CWQHGKIFLTLCFST   95 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~   95 (224)
                      +....+|++++.|.+
T Consensus       117 p~~~~~~~~~~~~~~  131 (758)
T PLN02352        117 PNPELKLRFMLWFRP  131 (758)
T ss_pred             CCCCCEEEEEEEEEE
Confidence            111268999999987

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=96.94  E-value=0.034  Score=41.94  Aligned_cols=61  Identities=23%  Similarity=0.344  Sum_probs=39.5

Q ss_pred             CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC-C--CceeEEEEEecCCCC
Q psy12137        134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK-S--NDYLGCLELCCNSKG  194 (224)
Q Consensus       134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~-~--~~~lG~~~l~l~~~~  194 (224)
                      ....|.+..++.+|.|+|+|.+.++.....+..|.|++++...-. +  ...+|-+.++|-..|
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~g  122 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDNG  122 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-TS
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeCC
Confidence            456777888889999999999999987777788999999865322 1  169999999987644

>KOG0905|consensus

Probab=96.93  E-value=0.00053  Score=63.35  Aligned_cols=62  Identities=26%  Similarity=0.334  Sum_probs=54.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeec
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLN   62 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~   62 (224)
                      ||.||.|||...+.+++.+.+..+.|.+.||..+.... .++|.+.|+|..+....+..-|++
T Consensus      1570 kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~ 1632 (1639)
T KOG0905|consen 1570 KTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYN 1632 (1639)
T ss_pred             ccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceee
Confidence            68999999999998899999999999999999998888 999999999999976665443333

>KOG3837|consensus

Probab=96.67  E-value=0.0013  Score=54.38  Aligned_cols=97  Identities=19%  Similarity=0.240  Sum_probs=73.6

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCC-CCCeEeeeeeeCCCCCeeceEEEEEeecCc-c--------ccc
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HKRKYKTGVKWKTLNPIFNEEFAIETKITE-L--------SKQ  165 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~-~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~-~--------~~~  165 (224)
                      ....|.+.|+++.+++.....--.|.|+++...-.+ ..++.+|.+++.+.+|.|+|.|.+.+.... .        ...
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            356788889999888765433345789998864333 237889999999999999999999885411 1        125


Q ss_pred             EEEEEEEECCC-CCCCceeEEEEEecCC
Q psy12137        166 TLVITVWDKDY-GKSNDYLGCLELCCNS  192 (224)
Q Consensus       166 ~l~i~v~~~~~-~~~~~~lG~~~l~l~~  192 (224)
                      .++|++|++.. +++|.++|.+.+.+.-
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~  472 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEI  472 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehh
Confidence            69999999885 5678899999998874

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.59  E-value=0.042  Score=39.56  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             CcEEEEEEecCCCC-C--eEeeeeeeCC-CCCeeceEEEEEeecCccc-ccEEEEEEEECCCCCCC----ceeEEEEEec
Q psy12137        120 DPFIKLYLKPDLHK-R--KYKTGVKWKT-LNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSN----DYLGCLELCC  190 (224)
Q Consensus       120 dpyv~~~~~~~~~~-~--~~~T~~~~~~-~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~~~~~~~~----~~lG~~~l~l  190 (224)
                      +.||.+.+..++.. .  ...|+....+ ..+.|+|.+.|++...++. ++.|.|+||..+.....    ..||.+.+++
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l   82 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL   82 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence            35677777654322 2  2366666666 7999999999998666665 46799999987765444    6999999998


Q ss_pred             CC
Q psy12137        191 NS  192 (224)
Q Consensus       191 ~~  192 (224)
                      -+
T Consensus        83 Fd   84 (142)
T PF00792_consen   83 FD   84 (142)
T ss_dssp             B-
T ss_pred             EC
Confidence            75

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.55  E-value=0.04  Score=40.09  Aligned_cols=102  Identities=17%  Similarity=0.211  Sum_probs=68.5

Q ss_pred             CCCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccc---------
Q psy12137         96 KKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK---------  164 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~--~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~---------  164 (224)
                      ....|+++|+.++-+-..-.  .+..+.-+.+.+.-  ++++++|+.+..+.+|.|+|.|.|++.......         
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f--~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls   84 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF--RGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS   84 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe--cCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence            34567888888875532211  14455566666543  449999999999999999999999986554221         


Q ss_pred             --cEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCc
Q psy12137        165 --QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH  209 (224)
Q Consensus       165 --~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~  209 (224)
                        ..|.+.|..-+..+...++|.-.++          |..++..+..
T Consensus        85 ~~~pihivli~~d~~~~~~Lv~s~~ld----------WR~vL~s~~~  121 (156)
T PF15627_consen   85 ISDPIHIVLIRTDPSGETTLVGSHFLD----------WRKVLCSGNG  121 (156)
T ss_pred             CCCceEEEEEEecCCCceEeeeeceeh----------HHHHhccCCC
Confidence              4577777776665555677766664          7777766654

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=96.51  E-value=0.029  Score=37.80  Aligned_cols=77  Identities=18%  Similarity=0.198  Sum_probs=51.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEECCC
Q psy12137        100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDY  176 (224)
Q Consensus       100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~~~~  176 (224)
                      +.+.+..+.++.........+.||++.+..++..  ....|+.+.....+.|||...|++...++. ++.|.|++|+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            4566666666654433323588999988764322  234566555556689999999997666555 4679999998643

Outlier of C2 family.

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=96.50  E-value=0.0044  Score=43.34  Aligned_cols=54  Identities=22%  Similarity=0.353  Sum_probs=40.4

Q ss_pred             CCCCCeeccEEEECccC-------------ccccccCeEEEEEEeCCCCCC-----------ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVS-------------ETDLSLQSLHILVLDDDKYGH-----------DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~-------------~~~~~~~~l~i~v~d~d~~~~-----------~~lG~~~i~l~~~~~~~   55 (224)
                      ++-.|+|+-.++|. .+             .+.|....|.|+||+....++           -.||.+.||+.++....
T Consensus        57 rSFcPeF~Hh~Efp-c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r  134 (143)
T cd08683          57 RSFCPEFNHHVEFP-CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR  134 (143)
T ss_pred             hhcCCCccceEEEe-cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence            46789999999994 33             133456789999999774332           37899999999997554

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=96.44  E-value=0.0036  Score=42.26  Aligned_cols=44  Identities=16%  Similarity=0.215  Sum_probs=35.3

Q ss_pred             CCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137          3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR   52 (224)
Q Consensus         3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~   52 (224)
                      -||.|||+|.| .|  +  ....+.|.|||.. ..+ ..||-.=+.+.++.
T Consensus        43 rnd~WnE~F~i-~V--d--k~nEiel~VyDk~-~~~~~Pi~llW~~~sdi~   87 (109)
T cd08689          43 RNDRWNEDFEI-PV--E--KNNEEEVIVYDKG-GDQPVPVGLLWLRLSDIA   87 (109)
T ss_pred             CCCcccceEEE-Ee--c--CCcEEEEEEEeCC-CCeecceeeehhhHHHHH
Confidence            58999999999 45  3  3679999999986 334 78898888888874

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02964 phosphatidylserine decarboxylase

Probab=96.16  E-value=0.003  Score=56.23  Aligned_cols=51  Identities=14%  Similarity=0.273  Sum_probs=43.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      +|+||+|||...| .|...+++.  .+|.|||.++++. +.+|.|.++|.++...
T Consensus        89 ~~~~p~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964         89 STDKPVWNSEKKL-LLEKNGPHL--ARISVFETNRLSKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             ccCCcccchhhce-EeccCCcce--EEEEEEecCCCCHHHhhhheeecHhhccHH
Confidence            5899999999999 677887764  5999999999999 9999999988777533

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.95  E-value=0.38  Score=34.40  Aligned_cols=89  Identities=18%  Similarity=0.176  Sum_probs=54.5

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeee-eCCCCCeeceEEEEEeecC------cccccEEEE
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVK-WKTLNPIFNEEFAIETKIT------ELSKQTLVI  169 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~-~~~~~p~~~e~f~f~~~~~------~~~~~~l~i  169 (224)
                      ..+.+.|.+..+++.    .....||+...  +... ....|... ..+....|+|.|.+.+...      ......+.|
T Consensus         7 f~~~l~i~~l~~~p~----~~~~v~v~wkr--~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    7 FQFDLTIHELENLPS----SNGKVFVKWKR--GDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             EEEEEEEEEeECcCC----CCCEEEEEEEE--CCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            346788888888876    12344555443  1111 12334333 2345679999998884321      244567899


Q ss_pred             EEEECCCCCCCceeEEEEEecCC
Q psy12137        170 TVWDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       170 ~v~~~~~~~~~~~lG~~~l~l~~  192 (224)
                      .|+....-++...+|.+.|+|..
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLae  103 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAE  103 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHH
Confidence            99887432333699999999885

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=95.76  E-value=0.37  Score=36.09  Aligned_cols=58  Identities=22%  Similarity=0.260  Sum_probs=43.2

Q ss_pred             eEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC-----CCCceeEEEEEecCC
Q psy12137        135 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG-----KSNDYLGCLELCCNS  192 (224)
Q Consensus       135 ~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~-----~~~~~lG~~~l~l~~  192 (224)
                      ..-+.+...+.+|.|+|+|.+.++.....+..|.|++++...-     .....+|-+.++|-.
T Consensus        53 s~~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          53 SEYTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             eeEEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            3334444444899999999999976655678899999986522     335689999999876

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.57  E-value=0.48  Score=39.24  Aligned_cols=49  Identities=18%  Similarity=0.363  Sum_probs=38.9

Q ss_pred             CCCCeeccEEEECccCcccc-----ccCeEEEEEEeCC-CCCC-ccceeEEeecccc
Q psy12137          2 TINPEFHEKLTFYSVSETDL-----SLQSLHILVLDDD-KYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~-----~~~~l~i~v~d~d-~~~~-~~lG~~~i~l~~~   51 (224)
                      +-.|.||..+.| .++...+     +...|.+++|..| ..++ ..||.+.++|..+
T Consensus        39 ~~~p~f~teL~W-E~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa   94 (340)
T PF12416_consen   39 TESPQFNTELAW-ECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSA   94 (340)
T ss_pred             CCCceeecceee-eccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccc
Confidence            357999999999 5554433     4477999999999 4455 9999999999998

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=94.90  E-value=0.14  Score=36.62  Aligned_cols=50  Identities=18%  Similarity=0.362  Sum_probs=37.7

Q ss_pred             CeeccEEEECc---cCc--cccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          5 PEFHEKLTFYS---VSE--TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         5 P~w~e~f~f~~---v~~--~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      -.|||+|.+..   ...  ..+....+.|.|+....-++ ..+|.+.|+|++....
T Consensus        52 v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~  107 (143)
T PF10358_consen   52 VQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANE  107 (143)
T ss_pred             EEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCc
Confidence            37999999841   211  23667789999999875556 6999999999999764

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.43  E-value=0.07  Score=39.21  Aligned_cols=47  Identities=23%  Similarity=0.294  Sum_probs=38.1

Q ss_pred             CCeeccEEEECccCcccccc-CeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          4 NPEFHEKLTFYSVSETDLSL-QSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         4 nP~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      .+.|||-..| .|...+++. ..|.|.|||++..++ ..||.+.++|=+-
T Consensus        59 ~~~WnEwl~f-pI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          59 RRNWNEWLTL-PIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CcccceeEEc-ccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            4679999999 588888854 669999999986666 8999998886543

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=94.21  E-value=0.11  Score=39.04  Aligned_cols=48  Identities=17%  Similarity=0.235  Sum_probs=35.3

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC----ccceeEEeeccc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH----DFLGEARFPLNR   50 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~----~~lG~~~i~l~~   50 (224)
                      +-+|.|+|+|.+ .++........|.|.+|+.....+    ..+|.+-+||-+
T Consensus        69 ~k~P~f~deiKi-~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   69 NKNPQFNDEIKI-QLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -SS-EEEEEEEE-EE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             CCCCCccEEEEE-EcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            458999999999 799888888999999999875432    489999999987

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=93.69  E-value=0.15  Score=38.18  Aligned_cols=47  Identities=17%  Similarity=0.214  Sum_probs=39.2

Q ss_pred             CCCeeccEEEECccCccccccCeEEEEEEeCCCC-----CC-ccceeEEeeccc
Q psy12137          3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-----GH-DFLGEARFPLNR   50 (224)
Q Consensus         3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~-----~~-~~lG~~~i~l~~   50 (224)
                      -+|.|+|+|.+ .+|........|.|.+|+....     .. ..+|.+-+||-+
T Consensus        63 k~p~f~deiKi-~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          63 KNPVFNDEIKI-QLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             CCCCCceeEEE-ecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            47999999999 7888877889999999997732     33 789999999875

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=93.55  E-value=0.14  Score=38.61  Aligned_cols=47  Identities=13%  Similarity=0.219  Sum_probs=37.5

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCC--C-ccceeEEeecc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--H-DFLGEARFPLN   49 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~--~-~~lG~~~i~l~   49 (224)
                      +-+|.|+|++.+ .|+.+......|.|.+++.....  . ..+|-+-+||-
T Consensus        63 ~~~P~W~EtiKi-~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          63 NNSPRWNETIKL-PIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             CCCCCCceeEEE-ecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            357999999999 89999999999999999865332  2 56777777763

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=93.51  E-value=0.16  Score=38.48  Aligned_cols=46  Identities=11%  Similarity=0.132  Sum_probs=36.5

Q ss_pred             CCCeeccEEEECccCccccccCeEEEEEEeCCCCC----C-ccceeEEeecc
Q psy12137          3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG----H-DFLGEARFPLN   49 (224)
Q Consensus         3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~----~-~~lG~~~i~l~   49 (224)
                      -+|.|+|++.+ .|+.++....+|.|.+++.....    . ..+|-+-+||-
T Consensus        64 ~~P~W~EtIKl-~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          64 DKPKWFETFKV-AIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             CCCCCceeEEE-ecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            47999999999 89999999999999999865321    1 35677777764

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.50  E-value=0.11  Score=37.92  Aligned_cols=48  Identities=25%  Similarity=0.282  Sum_probs=37.7

Q ss_pred             CCCeeccEEEECccCccccc-cCeEEEEEEeCCCCC--C-ccceeEEeecccc
Q psy12137          3 INPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYG--H-DFLGEARFPLNRL   51 (224)
Q Consensus         3 ~nP~w~e~f~f~~v~~~~~~-~~~l~i~v~d~d~~~--~-~~lG~~~i~l~~~   51 (224)
                      .++.|||...| .+...+++ +..|.|.||+++..+  . ..||.+.++|=+.
T Consensus        56 ~~~~Wne~l~F-~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          56 TSVTWNEWLTF-DILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             CCCcccceeEc-cchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence            46889999999 56666664 466999999988665  4 7899999987654

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG3837|consensus

Probab=93.38  E-value=0.24  Score=41.56  Aligned_cols=80  Identities=14%  Similarity=0.194  Sum_probs=57.2

Q ss_pred             CCCCeeccEEEECccCc---------cccccCeEEEEEEeCCCCCC--ccceeEEeeccccCCCcccceeecccccccCC
Q psy12137          2 TINPEFHEKLTFYSVSE---------TDLSLQSLHILVLDDDKYGH--DFLGEARFPLNRLRPHISRDLCLNLCKHYPVP   70 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~---------~~~~~~~l~i~v~d~d~~~~--~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~   70 (224)
                      |..|.|+|.|.+ .|-.         ..+..--+.|+||+...+.+  .++|.+.+.|+-|.....+...+++.+-    
T Consensus       414 t~SPdfde~fkl-ni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG----  488 (523)
T KOG3837|consen  414 TPSPDFDEDFKL-NIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG----  488 (523)
T ss_pred             CCCCCcccceee-eccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc----
Confidence            678999999998 4433         11223458999999998887  6999999999988766555544555431    


Q ss_pred             CcccccCcccceeceEEEEEEEEeC
Q psy12137         71 REEEVWGEEECWQHGKIFLTLCFST   95 (224)
Q Consensus        71 ~~~~~~~~~~~~~~g~l~i~~~~~~   95 (224)
                               +-...|+|.+++..-.
T Consensus       489 ---------RK~vGGkLevKvRiR~  504 (523)
T KOG3837|consen  489 ---------RKAVGGKLEVKVRIRQ  504 (523)
T ss_pred             ---------ccccCCeeEEEEEEec
Confidence                     2367788888776543

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=93.36  E-value=0.51  Score=35.33  Aligned_cols=61  Identities=20%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC------CCceeEEEEEecCCCC
Q psy12137        134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK------SNDYLGCLELCCNSKG  194 (224)
Q Consensus       134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~------~~~~lG~~~l~l~~~~  194 (224)
                      ....|.+...+.+|.|+|++.+.++.....+..|.|++++.+--.      ....+|-+.++|-..|
T Consensus        54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~g  120 (179)
T cd08696          54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRNG  120 (179)
T ss_pred             eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecCC
Confidence            567888888999999999999999877666778999999844211      1357999999987544

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=92.97  E-value=0.22  Score=35.81  Aligned_cols=48  Identities=27%  Similarity=0.334  Sum_probs=36.9

Q ss_pred             CCCeeccEEEECccCcccccc-CeEEEEEEeCCCCCC-----ccceeEEeecccc
Q psy12137          3 INPEFHEKLTFYSVSETDLSL-QSLHILVLDDDKYGH-----DFLGEARFPLNRL   51 (224)
Q Consensus         3 ~nP~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~~~~-----~~lG~~~i~l~~~   51 (224)
                      .+|.|||...| .|...+++. ..|.|.||+.+....     ..||.+.++|=+.
T Consensus        32 ~~~~W~e~l~F-~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   32 SRPKWDEWLTF-PIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             SSEEEEEEEEE-EEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             ccceEeeEEEe-ecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            57999999999 588888855 559999999886554     3789988886544

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=92.92  E-value=0.65  Score=33.86  Aligned_cols=84  Identities=18%  Similarity=0.324  Sum_probs=58.3

Q ss_pred             CCCCeeccEEEECccCcccc-----------ccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCccc--ceeecccccc
Q psy12137          2 TINPEFHEKLTFYSVSETDL-----------SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR--DLCLNLCKHY   67 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~-----------~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~--~~~~~l~~~~   67 (224)
                      +++|.|+|.|-| .+..+..           ....|++.|...|..+. .++|+-.++...+..+...  .+...+....
T Consensus        55 ~~eP~f~e~Flf-~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~  133 (156)
T PF15627_consen   55 ACEPDFNEEFLF-ELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG  133 (156)
T ss_pred             ccCCCCCCcEEE-EecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC
Confidence            578999999999 5665531           13679999999998888 9999999999988766654  3223332210


Q ss_pred             cCCCcccccCcccceeceEEEEEEEEeCC
Q psy12137         68 PVPREEEVWGEEECWQHGKIFLTLCFSTK   96 (224)
Q Consensus        68 ~l~~~~~~~~~~~~~~~g~l~i~~~~~~~   96 (224)
                                .......|-|.++++..+.
T Consensus       134 ----------~e~kv~~GiL~l~lELlP~  152 (156)
T PF15627_consen  134 ----------PESKVPVGILDLRLELLPN  152 (156)
T ss_pred             ----------CCCccceeEEEEEEEeecC
Confidence                      1112467888888876653

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=92.85  E-value=0.97  Score=33.51  Aligned_cols=68  Identities=18%  Similarity=0.290  Sum_probs=48.8

Q ss_pred             CCcEEEEEEecCCCCCeEeeeeeeC--CCCCeeceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCC
Q psy12137        119 SDPFIKLYLKPDLHKRKYKTGVKWK--TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK  193 (224)
Q Consensus       119 ~dpyv~~~~~~~~~~~~~~T~~~~~--~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~  193 (224)
                      ..-|+++.+.   ++...+|+...-  ...-.|+|.|.+.+.  ... ..|.++||.... .++.+|+++.|++-..
T Consensus        37 ~~~~ikl~~N---~k~V~~T~~~~l~~dF~v~f~~~f~v~i~--~~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~  106 (168)
T PF15625_consen   37 TRYYIKLFFN---DKEVSRTRSRPLWSDFRVHFNEIFNVQIT--RWP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGS  106 (168)
T ss_pred             eeEEEEEEEC---CEEEEeeeeEecCCCeEEeccCEEEEEEe--cCC-CEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence            3567888773   345566666543  234578899999884  333 599999999887 5688999999998753

>KOG1452|consensus

Probab=92.75  E-value=0.51  Score=38.23  Aligned_cols=84  Identities=12%  Similarity=0.038  Sum_probs=57.1

Q ss_pred             EEEeCCCCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEE
Q psy12137         91 LCFSTKKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLV  168 (224)
Q Consensus        91 ~~~~~~~~~l~v~i~~a~~L~~~~~--~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~  168 (224)
                      +......|.|.+.++.+|+|.-...  +-+.+-|+.+...   .....+|.+......-.|.|.|..++-    ....+.
T Consensus        44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d---rqh~aRt~vrs~~~~f~w~e~F~~Dvv----~~~vl~  116 (442)
T KOG1452|consen   44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD---RQHPARTRVRSSGPGFAWAEDFKHDVV----NIEVLH  116 (442)
T ss_pred             eeeecccceEEEEEecccccccChhccCceeeeeeeeeec---ccCccccccccCCCCccchhhceeecc----cceeee
Confidence            3444568999999999999965432  3456778888762   236667777766666678898887752    124677


Q ss_pred             EEEEECCCCCCCc
Q psy12137        169 ITVWDKDYGKSND  181 (224)
Q Consensus       169 i~v~~~~~~~~~~  181 (224)
                      +-||.++.-.++.
T Consensus       117 ~lvySW~pq~RHK  129 (442)
T KOG1452|consen  117 YLVYSWPPQRRHK  129 (442)
T ss_pred             EEEeecCchhhcc
Confidence            8888877654443

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=92.51  E-value=0.83  Score=34.41  Aligned_cols=59  Identities=22%  Similarity=0.195  Sum_probs=46.5

Q ss_pred             CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC--CC-------CCceeEEEEEecCC
Q psy12137        134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY--GK-------SNDYLGCLELCCNS  192 (224)
Q Consensus       134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~--~~-------~~~~lG~~~l~l~~  192 (224)
                      ....|.+...+.+|.|.|++-+.++.....+..|.|++|+..-  -.       ....+|-+.++|-.
T Consensus        56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            5677888888999999999999998777777789999998651  11       13578999999764

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.76  E-value=0.26  Score=36.16  Aligned_cols=47  Identities=19%  Similarity=0.184  Sum_probs=36.2

Q ss_pred             CCeeccEEEECccCcccccc-CeEEEEEEeCCCCC----C-ccceeEEeecccc
Q psy12137          4 NPEFHEKLTFYSVSETDLSL-QSLHILVLDDDKYG----H-DFLGEARFPLNRL   51 (224)
Q Consensus         4 nP~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~~~----~-~~lG~~~i~l~~~   51 (224)
                      ++.|||-..| .|...+++. ..|.|.||++....    . ..||.+.++|=+-
T Consensus        54 ~~~WnEwL~f-pI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          54 NPRWNEWLDY-DIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             CCccceeEEc-ccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence            6889999999 588888854 66999999987421    2 5689998887554

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.72  E-value=0.43  Score=35.60  Aligned_cols=32  Identities=25%  Similarity=0.441  Sum_probs=26.1

Q ss_pred             CCCeeccEEEECccCcccccc-CeEEEEEEeCCC
Q psy12137          3 INPEFHEKLTFYSVSETDLSL-QSLHILVLDDDK   35 (224)
Q Consensus         3 ~nP~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~   35 (224)
                      -++.|||.+.| .|...+|+. ..|.|.||++..
T Consensus        55 ~~~~Wnewl~F-~I~i~dLPr~ArLciti~~~~~   87 (173)
T cd08693          55 NDPVWNETLEF-DINVCDLPRMARLCFAIYEVSK   87 (173)
T ss_pred             CccccceeEEc-ccchhcCChhHeEEEEEEEecc
Confidence            35889999999 688888854 669999999864

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=90.47  E-value=1.8  Score=28.54  Aligned_cols=50  Identities=24%  Similarity=0.258  Sum_probs=35.3

Q ss_pred             CCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137        119 SDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus       119 ~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      .+..+.+++.   ++....|.-+. ..+..|++.|.|.+..    ...|.|.||.+|.
T Consensus         9 ~eV~avLklD---n~~VgqT~Wk~-~s~q~WDQ~Fti~LdR----sRELEI~VywrD~   58 (98)
T cd08687           9 SEVSAVLKLD---NTVVGQTQWKP-KSNQAWDQSFTLELER----SRELEIAVYWRDW   58 (98)
T ss_pred             cceEEEEEEc---CeEEeeccccc-cccccccceeEEEeec----ccEEEEEEEEecc
Confidence            5677777773   22455555543 3578999999999843    3689999998774

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain

Probab=90.12  E-value=5  Score=28.25  Aligned_cols=89  Identities=17%  Similarity=0.244  Sum_probs=51.2

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeE-eeeeeeCCCCCee-ceEEEEEeecCcccccEEEEEEEECC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY-KTGVKWKTLNPIF-NEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~-~T~~~~~~~~p~~-~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      ..|.+.-+.-.++|..+..+.+.||++++-    +.... .+...... .... ...+.+.+...-+-...+.|.+|+.+
T Consensus         4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~----~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~   78 (134)
T PF10409_consen    4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYN----GGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKR   78 (134)
T ss_dssp             -EEEEEEEEEES-TTSTTSSCCTEEEEEEE----TTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECE
T ss_pred             eeEEEEEEEEECCCccCCCCCEEEEEEEEC----CCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCC
Confidence            455666666677887766678899999985    33222 22222111 1111 23344443322222578999999987


Q ss_pred             C-CCCCceeEEEEEecC
Q psy12137        176 Y-GKSNDYLGCLELCCN  191 (224)
Q Consensus       176 ~-~~~~~~lG~~~l~l~  191 (224)
                      . ...++.+.++++.-.
T Consensus        79 ~~~~~~~~~f~~~FnT~   95 (134)
T PF10409_consen   79 SSSMSKEKMFRFWFNTG   95 (134)
T ss_dssp             TTECCCEEEEEEEEEGG
T ss_pred             CcccccCeEEEEEEeee
Confidence            3 445678888888744

The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.95  E-value=0.4  Score=35.65  Aligned_cols=47  Identities=17%  Similarity=0.230  Sum_probs=35.4

Q ss_pred             CCeeccEEEECccCccccc-cCeEEEEEEeCCCCC---------C-ccceeEEeecccc
Q psy12137          4 NPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYG---------H-DFLGEARFPLNRL   51 (224)
Q Consensus         4 nP~w~e~f~f~~v~~~~~~-~~~l~i~v~d~d~~~---------~-~~lG~~~i~l~~~   51 (224)
                      .+.|||...| .+...+++ +..|.|.||+....+         . ..||-+.++|=+.
T Consensus        62 ~~~Wnewl~F-~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          62 RVVWDEWIEF-PIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             cccccceEEC-ccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            4669999999 56677664 466999999987554         4 6888888886543

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=88.96  E-value=1.7  Score=28.60  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=30.8

Q ss_pred             CCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeecccc
Q psy12137          4 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRL   51 (224)
Q Consensus         4 nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~   51 (224)
                      +..|++.|.+ .+.    ..+.|+|.||=.|  -+..-|-..+.|++.
T Consensus        32 ~q~WDQ~Fti-~Ld----RsRELEI~VywrD--~RslCav~~lrLEd~   72 (98)
T cd08687          32 NQAWDQSFTL-ELE----RSRELEIAVYWRD--WRSLCAVKFLKLEDE   72 (98)
T ss_pred             cccccceeEE-Eee----cccEEEEEEEEec--chhhhhheeeEhhhh
Confidence            5789999999 343    3689999999776  345667777888873

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG4027|consensus

Probab=88.05  E-value=8.4  Score=28.09  Aligned_cols=46  Identities=17%  Similarity=0.154  Sum_probs=34.2

Q ss_pred             ccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                      ...|.+.||.+|..++|.+.|-.-|.+-.             .|++...+-|-+.|.+.
T Consensus        82 WPqivl~vfg~d~~G~d~v~GYg~~hiP~-------------~pgrh~~~vp~f~Pe~~  127 (187)
T KOG4027|consen   82 WPQIVLNVFGKDHSGKDCVTGYGMLHIPT-------------EPGRHVCRVPCFLPEPS  127 (187)
T ss_pred             CceEEEEEecCCcCCcceeeeeeeEecCc-------------CCCceeEEEeeEecCCH
Confidence            36899999999999999999888777644             34556666666666554

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=87.85  E-value=1.5  Score=32.98  Aligned_cols=48  Identities=21%  Similarity=0.256  Sum_probs=38.1

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCC---------CC-ccceeEEeeccc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY---------GH-DFLGEARFPLNR   50 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~---------~~-~~lG~~~i~l~~   50 (224)
                      +-+|.|+|++.+ .++......-.|.|..|+..-.         +. ..+|.+-+||-.
T Consensus        66 ~k~P~f~dEiKI-~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          66 NQNPEFYDEIKI-ELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             CCCCccceeEEE-ecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            458999999999 7998888888999999997621         12 458888888754

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=87.37  E-value=9.8  Score=28.13  Aligned_cols=85  Identities=15%  Similarity=0.087  Sum_probs=53.7

Q ss_pred             EEEEEEeecCCCCCCCCCCCcEEEEEEecCCC------CC-eEeeeeeeC-----CCCCeeceEEEEEeecCcccc-cEE
Q psy12137        101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH------KR-KYKTGVKWK-----TLNPIFNEEFAIETKITELSK-QTL  167 (224)
Q Consensus       101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~------~~-~~~T~~~~~-----~~~p~~~e~f~f~~~~~~~~~-~~l  167 (224)
                      .=.|..|.+..      ..+.||+..+..+.+      .. ...|.+.+.     .....||-.|.+.+....+.. ..|
T Consensus         5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L   78 (168)
T PF07162_consen    5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL   78 (168)
T ss_pred             EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence            34566676553      236788877643221      12 334444332     345789988888865554443 689


Q ss_pred             EEEEEECCCCCCCceeEEEEEecC
Q psy12137        168 VITVWDKDYGKSNDYLGCLELCCN  191 (224)
Q Consensus       168 ~i~v~~~~~~~~~~~lG~~~l~l~  191 (224)
                      .|+||..|..+++.+.|-..+.+-
T Consensus        79 ~l~V~~~D~~gr~~~~GYG~~~lP  102 (168)
T PF07162_consen   79 VLQVYSLDSWGRDRVEGYGFCHLP  102 (168)
T ss_pred             EEEEEEEcccCCeEEeEEeEEEeC
Confidence            999999999999888876655544

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>KOG1265|consensus

Probab=87.26  E-value=0.47  Score=43.56  Aligned_cols=47  Identities=32%  Similarity=0.654  Sum_probs=36.6

Q ss_pred             CCCCCeeccE-EEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccC
Q psy12137          1 RTINPEFHEK-LTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR   52 (224)
Q Consensus         1 ~t~nP~w~e~-f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~   52 (224)
                      |++||+|+|. |.|..|-..++  ..|+|.||+-   +..+||+=.+|+..+.
T Consensus       748 n~~npvy~eepfvF~KVvLpeL--A~lRiavyeE---ggK~ig~RIlpvd~l~  795 (1189)
T KOG1265|consen  748 NSFNPVYEEEPFVFRKVVLPEL--ASLRIAVYEE---GGKFIGQRILPVDGLN  795 (1189)
T ss_pred             CCCCcccccCCcccceecccch--hheeeeeecc---CCceeeeeccchhccc
Confidence            5789999975 77755545544  4899999976   4479999999999884

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=86.22  E-value=1.9  Score=32.27  Aligned_cols=48  Identities=17%  Similarity=0.238  Sum_probs=37.2

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCC----C--C-ccceeEEeeccc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY----G--H-DFLGEARFPLNR   50 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~----~--~-~~lG~~~i~l~~   50 (224)
                      +-+|.|+|++.. .+|........|.|..|+....    +  . ..+|.+-+||-+
T Consensus        64 nk~P~f~DEiKi-~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          64 NKSPDFYDEIKI-KLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             CCCCcccceEEE-EcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            457999999999 7988888888999999996531    1  1 457888777653

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>KOG1327|consensus

Probab=84.71  E-value=3  Score=36.51  Aligned_cols=57  Identities=30%  Similarity=0.443  Sum_probs=43.0

Q ss_pred             CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC----CCCCceeEEEEEecCC
Q psy12137        134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY----GKSNDYLGCLELCCNS  192 (224)
Q Consensus       134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~----~~~~~~lG~~~l~l~~  192 (224)
                      ...+|.++++..+|.|-+.|.+.--.+..  ..|.+.+++.+.    ....+++|++...+..
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~v--Q~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~  101 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKV--QLLRFEVYDIDSRTPDLSSADFLGTAECTLSQ  101 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeee--eeEEEEEeecCCccCCcchhcccceeeeehhh
Confidence            34588999999999999998776544443  478999998663    3456799998887763

>KOG0906|consensus

Probab=84.15  E-value=1.6  Score=39.01  Aligned_cols=75  Identities=20%  Similarity=0.246  Sum_probs=52.2

Q ss_pred             CCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137        118 FSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       118 ~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~l~l~~  192 (224)
                      .+|.|++..+...+..  .-.+|+.+..+..-.|||.+.+++...++. ++.+.|++|+........++|..++.+..
T Consensus        46 ~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~  123 (843)
T KOG0906|consen   46 SSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG  123 (843)
T ss_pred             chhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence            4566776666544322  233455444444456999999997766665 46799999998766677899999999875

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=83.22  E-value=8.5  Score=28.46  Aligned_cols=48  Identities=17%  Similarity=0.149  Sum_probs=34.2

Q ss_pred             CeeccEEEECccCcccccc-CeEEEEEEeCCCCCC-ccceeEEeeccccCC
Q psy12137          5 PEFHEKLTFYSVSETDLSL-QSLHILVLDDDKYGH-DFLGEARFPLNRLRP   53 (224)
Q Consensus         5 P~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~   53 (224)
                      -.||--|+++ .....+.. -.|.|+||..|..++ ...|...+.|-.-..
T Consensus        57 ~~f~~P~d~~-~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~lP~~pG  106 (168)
T PF07162_consen   57 AVFNHPFDLH-FKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHLPTQPG  106 (168)
T ss_pred             eEEeccEEEE-EEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEeCCCCc
Confidence            4688888884 33333323 579999999999999 888777777655543

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=81.26  E-value=8.9  Score=26.13  Aligned_cols=57  Identities=14%  Similarity=0.172  Sum_probs=31.1

Q ss_pred             CeEeeeeeeCCCCCeeceEEEEEeecCc-----ccccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137        134 RKYKTGVKWKTLNPIFNEEFAIETKITE-----LSKQTLVITVWDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~-----~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~  192 (224)
                      ..+.|.+.. ..+|.+|-+-.|.+...+     +....+.|+++.... .....+|.+.+++..
T Consensus        11 Etq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~   72 (107)
T PF11618_consen   11 ETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRP   72 (107)
T ss_dssp             --EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SH
T ss_pred             eeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechh
Confidence            677888887 679999999999875443     335789999998763 346799999999874

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=80.92  E-value=2.5  Score=31.70  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=26.5

Q ss_pred             CCCeeccEEEECccCcccccc-CeEEEEEEeCCCC
Q psy12137          3 INPEFHEKLTFYSVSETDLSL-QSLHILVLDDDKY   36 (224)
Q Consensus         3 ~nP~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~~   36 (224)
                      -+|.|||-..| .|...+++. ..|.|.||++...
T Consensus        57 ~~~~WnEwL~f-~I~~~dLP~~arLc~ti~~~~~~   90 (178)
T cd08399          57 EEVLWNTWLEF-DIKIKDLPKGALLNLQIYCGKAP   90 (178)
T ss_pred             CCccccccEEC-ccccccCChhhEEEEEEEEEecC
Confidence            46889999999 588888854 6699999998543

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		8e-36
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		3e-35
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		1e-34
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		2e-20
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		8e-17
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		1e-19
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		2e-16
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		2e-16
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		3e-16
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		3e-16
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		3e-16
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		4e-16
1k5w_A	152	Three-Dimensional Structure Of The Synaptotagmin 1		3e-14
2lha_A	151	Solution Structure Of C2b With Ip6 Length = 151		3e-14
1tjm_A	159	Crystallographic Identification Of Sr2+ Coordinatio		4e-14
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		2e-13
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		8e-13
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		9e-13
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		2e-12
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		7e-12
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		1e-11
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		3e-11
2dmg_A	142	Solution Structure Of The Third C2 Domain Of Kiaa12		3e-11
1w15_A	153	Rat Synaptotagmin 4 C2b Domain In The Presence Of C		4e-11
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		4e-10
3fdw_A	148	Crystal Structure Of A C2 Domain From Human Synapto		5e-10
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		2e-09
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		2e-09
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		1e-06
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		1e-06
2b3r_A	134	Crystal Structure Of The C2 Domain Of Class Ii Phos		1e-04
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		3e-04
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		4e-04
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		6e-04
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		7e-04

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 83  QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 141
           + GKI ++L +ST++  LIV +I+C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K
Sbjct: 22  ERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIK 81
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 201
            KTLNP FNEEF  + K ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW 
Sbjct: 82  KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWY 141
Query: 202 DMMKYPDHKHEGIHNLS 218
           + +K  D K E  H L 
Sbjct: 142 ECLKNKDKKIERWHQLQ 158

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 101/135 (74%), Gaps = 1/135 (0%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 143
           GKI ++L +ST++  LIV +I+C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K K
Sbjct: 2   GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
           TLNP FNEEF  + K ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + 
Sbjct: 62  TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYEC 121
Query: 204 MKYPDHKHEGIHNLS 218
           +K  D K E  H L 
Sbjct: 122 LKNKDKKIERWHQLQ 136

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 100/137 (72%), Gaps = 1/137 (0%)
Query: 83  QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 141
           + GKI ++L +ST++  LIV +I+C +L   D+NG+SDPF+KL+LKPD  K+ K+KT +K
Sbjct: 22  ERGKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIK 81
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 201
            KTLNP FNEEF  + K ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW 
Sbjct: 82  KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWY 141
Query: 202 DMMKYPDHKHEGIHNLS 218
           + +K  D K E  H L 
Sbjct: 142 ECLKNKDKKIERWHQLQ 158

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 15/223 (6%)
Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR-PHISRD 58
           +T+NP F+E+ TF  V  ++L+ ++L + V D D++  HD +GE + P+N +   H++ +
Sbjct: 63  KTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 121
Query: 59  LCLNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF 118
                       R           + G I  +L +      L V +++  NL  MD  G 
Sbjct: 122 W-----------RDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGL 170
Query: 119 SDPFIKLYLKPD-LHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 177
           SDP++K++L  +    +K KT +K  TLNP +NE F+ E    ++ K  +V+TV D D  
Sbjct: 171 SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 230
Query: 178 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 220
             ND +G + +  NS G  LRHW DM+  P       H L ++
Sbjct: 231 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K++T V  KT
Sbjct: 6   GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 64
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 202
           LNP+FNE+F  +   +EL+ +TLV+ V+D D    +D +G  ++  N+   G     W D
Sbjct: 65  LNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 124
Query: 203 MMKYPDHKHEGIHNL 217
           +      + E + ++
Sbjct: 125 LQSAEKEEQEKLGDI 139

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 84  HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK-PDLHKRKYKTGVKW 142
            G++ L+LC++    ++IVN+IK  NL  MD  G SDP++K++L   D    K KT  K 
Sbjct: 2   RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61
Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVD 202
           + LNPIFNE FA +    +L + T++ITV DKD    ND +G + L   S    ++HW D
Sbjct: 62  RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKD 121
Query: 203 MMKYPDHKHEGIHNL 217
           M+  P       H L
Sbjct: 122 MIARPRQPVAQWHQL 136

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K++T V  KT
Sbjct: 21  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 79
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 202
           LNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G  ++  N+   G     W D
Sbjct: 80  LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 203 M 203
           +
Sbjct: 140 L 140

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K++T V  KT
Sbjct: 21  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 79
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 202
           LNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G  ++  N+   G     W D
Sbjct: 80  LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 203 M 203
           +
Sbjct: 140 L 140

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K++T V  KT
Sbjct: 29  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 87
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 202
           LNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G  ++  N+   G     W D
Sbjct: 88  LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 147
Query: 203 M 203
           +
Sbjct: 148 L 148

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K++T V  KT
Sbjct: 4   GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 62
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 202
           LNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G  ++  N+   G     W D
Sbjct: 63  LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 122
Query: 203 M 203
           +
Sbjct: 123 L 123

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
           +T+NP F+E   F SV   +L+ + LH  V D D++  HD +G+           +  D 
Sbjct: 65  KTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQ-----------VVLDN 112
Query: 60  CLNLCKH---YPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN 116
            L L +     P+ R             G++  +LC+      L V +IK +NL  MD  
Sbjct: 113 LLELAEQPPDRPLWRDILEGGSEKA-DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLT 171
Query: 117 GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175
           GFSDP++K  L  +  + +K KT +K  TLNP +NE    +     +    L I V D D
Sbjct: 172 GFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 231
Query: 176 YGKSNDYLGCLELCCNSKGDRLR-HWVDMMKYPDHKHEGIHNL 217
               N+ +G   +   +     R HW +M+  P    E  H L
Sbjct: 232 CIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 274

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
           +T+NP F+E   F SV   +L+ + LH  V D D++  HD +G+           +  D 
Sbjct: 64  KTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQ-----------VVLDN 111
Query: 60  CLNLCKH---YPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN 116
            L L +     P+ R             G++  +LC+      L V +IK +NL  MD  
Sbjct: 112 LLELAEQPPDRPLWRDILEGGSEKA-DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLT 170
Query: 117 GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175
           GFSDP++K  L  +  + +K KT +K  TLNP +NE    +     +    L I V D D
Sbjct: 171 GFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 230
Query: 176 YGKSNDYLGCLELCCNSKGDRLR-HWVDMMKYPDHKHEGIHNL 217
               N+ +G   +   +     R HW +M+  P    E  H L
Sbjct: 231 CIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273

>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 143
           G I  +L +      L V +++  NL  MD  G SDP++K++L  +    +K KT +K  
Sbjct: 5   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 64
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
           TLNP +NE F+ E    ++ K  +V+TV D D    ND +G + +  NS G  LRHW DM
Sbjct: 65  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 124
Query: 204 MKYPDHKHEGIHNLSIK 220
           +  P       H L ++
Sbjct: 125 LANPRRPIAQWHTLQVE 141

>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 143
           G I  +L +      L V +++  NL  MD  G SDP++K++L  +    +K KT +K  
Sbjct: 4   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 63
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
           TLNP +NE F+ E    ++ K  +V+TV D D    ND +G + +  NS G  LRHW DM
Sbjct: 64  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 123
Query: 204 MKYPDHKHEGIHNLSIK 220
           +  P       H L ++
Sbjct: 124 LANPRRPIAQWHTLQVE 140

>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYL-KPDLHKRKYKTGVKWK 143
           G I  +L +      L V +++  NL  MD  G SDP++K++L +     +K KT +K  
Sbjct: 12  GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
           TLNP +NE F+ E    ++ K  +V+TV D D    ND +G + +  NS G  LRHW DM
Sbjct: 72  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131
Query: 204 MKYPDHKHEGIHNLSIK 220
           +  P       H L ++
Sbjct: 132 LANPRRPIAQWHTLQVE 148

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 15/129 (11%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--------RKY 136
           G+I L + +      LI+++++  NL+P D+NG+SDPF+K+YL P   +         +Y
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 137 KTGVKW--KTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 191
           K   K+  K+LNP +N+    ++  + +L K+TL +TVWD D   SND+LG   ++L   
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 192 SKGDRLRHW 200
           S  D    W
Sbjct: 125 SHLDNTPRW 133

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 83  QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 141
           + G+I+L    + +K  L V +    NLIPMD NG SDP++KL L PD  ++ K KT   
Sbjct: 4   KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI 61
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
             TLNP +NE F  + K ++  ++ L + +WD D    ND++G L    +
Sbjct: 62  RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFMGSLSFGVS 110

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 83  QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 141
           + G+I+L    + +K  L V +    NLIPMD NG SDP++KL L PD  ++ K KT   
Sbjct: 3   KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI 60
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
             TLNP +NE F  + K ++  ++ L + +WD D    ND++G L    +
Sbjct: 61  RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFMGSLSFGVS 109

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 83  QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD---LHKRKYKTG 139
           + G++ L +   T    + V + +  NLIPMD NG SDP++KL L PD   L K+K +T 
Sbjct: 6   RRGRLQLEIRAPTADE-IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRT- 63
Query: 140 VKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192
           VK  TLNP++NE F    K  ++ ++ L + VWD D    ND++G +    + 
Sbjct: 64  VK-ATLNPVWNETFVFNLKPGDVERR-LSVEVWDWDRTSRNDFMGAMSFGVSE 114

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 83  QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 141
           + G+I++       +  LIV +    NL+PMD NG SDP++KL L PD   + K KT   
Sbjct: 159 RRGRIYIQA--HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 216
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
             +LNP +NE F  + K ++  ++ L + +WD D    ND++G L  
Sbjct: 217 KSSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTSRNDFMGSLSF 262

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 83  QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 141
           + G+I+L    + +K  L V +    NLIP D NG SDP++KL L PD  ++ K KT   
Sbjct: 5   KRGRIYLKAEVADEK--LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTI 62
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
             TLNP +NE F  + K ++  ++ L + +WD D    ND+ G L    +
Sbjct: 63  RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFXGSLSFGVS 111

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 83  QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 141
           + G+I++       +  LIV +    NL+PMD NG SDP++KL L PD   + K KT   
Sbjct: 18  RRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 75
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
             +LNP +NE F  + K ++  ++ L + +WD D    ND++G L    +
Sbjct: 76  KCSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTSRNDFMGSLSFGIS 124

>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228 Protein Length = 142

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 143
           G+I LT+  S+++  LIV +  C NLI    +G SDP++++YL PD  +  + KT V  K
Sbjct: 11  GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITV 171
           TLNP+F++ F     + E+ ++TL + V
Sbjct: 70  TLNPVFDQSFDFSVSLPEVQRRTLDVAV 97

>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G++ ++LC+ +    L V ++K  +L   D +G SDP++K+ L     +  K KT VK  
Sbjct: 17  GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 76
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
           T N +FNE F  +     L + ++   V D + G  N+ +G L L   ++G    HW ++
Sbjct: 77  TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEI 136
Query: 204 MKYPDHKHEGIHNL 217
             +P  +    H L
Sbjct: 137 CDFPRRQIAKWHML 150

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           G+I  ++ ++ ++  L V ++K   L   D +G SDPF+K+YL PD  K K +T VK K 
Sbjct: 13  GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 71
Query: 145 LNPIFNEEFAIETKITE-LSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
           LNP +NE F  E    E + ++ L + V D D    ND +G + +  N
Sbjct: 72  LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLN 119

>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 142
           G+I  +L +  + ++L+V++ +C  L   D +   S+P++K YL PD  ++ K KT +K 
Sbjct: 10  GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192
            T+NP+++E    E   + L+++TL  +VW       N +LG  E+  +S
Sbjct: 70  DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS 119

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G +  +L +      L   +I+   L PMDSNG +DP++KL+L P   K  K +T     
Sbjct: 14  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 73
Query: 144 TLNPIFNEEFAIETKITE--LSKQTLVITVWDKDYGKSNDYLG 184
           T NP++NE       ITE  + ++TL I+V D+D    N+++G
Sbjct: 74  TRNPVWNETLQYHG-ITEEDMQRKTLRISVCDEDKFGHNEFIG 115

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G +  +L +      L   +I+   L PMDSNG +DP++KL+L P   K  K +T     
Sbjct: 16  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 144 TLNPIFNEEFAIETKITE--LSKQTLVITVWDKDYGKSNDYLG 184
           T NP++NE       ITE  + ++TL I+V D+D    N+++G
Sbjct: 76  TRNPVWNETLQYHG-ITEEDMQRKTLRISVCDEDKFGHNEFIG 117

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 82  WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-------GFSDPFIKLYLKPDLHKR 134
           +Q G +  +  +      L V +I+  +L P  S+         S+P++K+ L PD  K 
Sbjct: 10  YQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD-QKN 68
Query: 135 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175
             +TGVK KT  P+F E +  E    E  ++TL++TV D D
Sbjct: 69  SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFD 109

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 87  IFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWKTL 145
           +F +L ++ +++A +VN+ +   L  MD     SDP+IK+ + P+  K K KT V  KTL
Sbjct: 11  LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRKTL 69
Query: 146 NPIFNEEFAI-ETKITELSKQTLVITVWDKDYGKSNDYLG 184
           +P F+E F       T++ +  L  T+   D    +D +G
Sbjct: 70  DPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIG 109

>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G   + L  S +   L + ++   +L+  D     +P++K YL PD HK  K KT +  K
Sbjct: 7   GSGAVKLSVSYRNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 144 TLNPIFNEEFAIETKITE-LSKQTLVITVWDKDYGKSNDYLGCLEL 188
           T NP FNE         E L ++ L ++V   +  + N +LG + L
Sbjct: 66  TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITL 111

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK 143
           G++ + L F      LIV ++   +L   +     +P++K+Y  PD   K K +T    K
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 144 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGK--SNDYLGCL 186
           TL P +N+ F        E  ++ L IT+WD+   +   +++LG +
Sbjct: 65  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEI 110

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V ++K  +L+  D +G SDPF  L L  D    + +T   +K LNP +N+ F    K 
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLELGND----RLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 160 TELSKQTLVITVWDKDYGKSNDYLG 184
                  L +TV+D+D  K  D+LG
Sbjct: 71  IH---DVLEVTVFDEDGDKPPDFLG 92

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L+V++I+ T L     NG S+P+ ++     +  + Y T     TLNP +N  F  +  I
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEI----SMGSQSYTTRTIQDTLNPKWN--FNCQFFI 442
Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLEL 188
            +L +  L +T++D+D    +D+LG  E+
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 96  KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK---YKTGVKWKTLNPIFNEE 152
           + R L V ++   +L   D  G SDP++KL L      R+    +T    KTLNP +NEE
Sbjct: 19  ESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEE 78
Query: 153 FAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
           F         S   L+  V+D++    +D+LG +++  +
Sbjct: 79  FYFRVNP---SNHRLLFEVFDENRLTRDDFLGQVDVPLS 114

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-60
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-36
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	4e-57
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	5e-35
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	5e-51
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-06
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	4e-50
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-06
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	6e-50
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	9e-07
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-48
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	7e-06
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-43
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	4e-10
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-43
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	7e-10
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-39
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-08
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	8e-39
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	3e-10
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-38
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	9e-13
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-38
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	4e-08
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-37
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-10
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-37
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-12
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	2e-37
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	3e-10
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	3e-37
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-07
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	4e-37
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-11
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	6e-37
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	4e-10
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-36
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-14
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	6e-35
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	2e-10
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	7e-35
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-10
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-32
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-07
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	1e-30
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	3e-11
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	3e-29
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	9e-10
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	9e-29
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	4e-06
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	1e-26
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-12
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	8e-26
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	8e-08
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-24
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	9e-10
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	4e-24
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	4e-10
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	3e-23
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	6e-05
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-21
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-07
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	4e-21
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	3e-04
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-19
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	1e-04
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-16
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-06
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-16
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	4e-05
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-15
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-05
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	4e-08
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-04
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	4e-04
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	6e-04

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  190 bits (483), Expect = 3e-60
 Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 13/219 (5%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
           +T+NP F+E+ TF  V  ++L+ ++L + V D D++  HD +GE + P+N +      + 
Sbjct: 63  KTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 121

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
             +L          +   +EE  + G I  +L +      L V +++  NL  MD  G S
Sbjct: 122 WRDL----------QSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLS 171

Query: 120 DPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 178
           DP++K++L  +  + +K KT +K  TLNP +NE F+ E    ++ K  +V+TV D D   
Sbjct: 172 DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 231

Query: 179 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217
            ND +G + +  NS G  LRHW DM+  P       H L
Sbjct: 232 KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  128 bits (322), Expect = 3e-36
 Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 6/147 (4%)

Query: 77  GEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY 136
           G E+    GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K+
Sbjct: 1   GSEKL---GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKF 56

Query: 137 KTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKG 194
           +T V  KTLNP+FNE+F  +   +EL+ +TLV+ V+D D    +D +G   + +     G
Sbjct: 57  ETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116

Query: 195 DRLRHWVDMMKYPDHKHEGIHNLSIKP 221
                W D+      + E + ++    
Sbjct: 117 HVTEEWRDLQSAEKEEQEKLGDICFSL 143

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  181 bits (462), Expect = 4e-57
 Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 13/220 (5%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
           +T+NP F+E   F SV   +L+ + LH  V D D++  HD +G+              + 
Sbjct: 64  KTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL----LELAEQ 118

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
             +      +       G  E    G++  +LC+      L V +IK +NL  MD  GFS
Sbjct: 119 PPDRPLWRDIL-----EGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFS 173

Query: 120 DPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 178
           DP++K  L  +  + +K KT +K  TLNP +NE    +     +    L I V D D   
Sbjct: 174 DPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG 233

Query: 179 SNDYLGCLELCCNSKGDR-LRHWVDMMKYPDHKHEGIHNL 217
            N+ +G   +   +       HW +M+  P    E  H L
Sbjct: 234 HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  124 bits (314), Expect = 5e-35
 Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           G+I   L +      L+V +++  +L   DSNGFSDP++K+YL PD  K+K++T V  KT
Sbjct: 7   GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 65

Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMM 204
           LNPIFNE F     + EL+++ L  +V+D D    +D +G + L    +         + 
Sbjct: 66  LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 125

Query: 205 KY-----PDHKHEGIHNLSIK 220
           +       +    G  N S+ 
Sbjct: 126 RDILEGGSEKADLGELNFSLC 146

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  162 bits (411), Expect = 5e-51
 Identities = 73/148 (49%), Positives = 106/148 (71%), Gaps = 1/148 (0%)

Query: 71  REEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130
            EE+V    +  + GKI ++L +ST++  LIV +I+C +L  MD+NG+SDPF+KL+LKPD
Sbjct: 10  EEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPD 69

Query: 131 LHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC 189
           + K  K+KT +K KTLNP FNEEF  + K ++L+K++L I+VWD D GKSNDY+G  +L 
Sbjct: 70  MGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG 129

Query: 190 CNSKGDRLRHWVDMMKYPDHKHEGIHNL 217
            ++KG+RL+HW + +K  D K E  H L
Sbjct: 130 ISAKGERLKHWYECLKNKDKKIERWHQL 157

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 49
           +T+NPEF+E+  +  +  +DL+ +SL I V D D    +D++G  +  ++
Sbjct: 83  KTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  159 bits (404), Expect = 4e-50
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 83  QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVK 141
             G++ ++LC+ +    L V ++K  +L   D +G SDP++K+ L     +  K KT VK
Sbjct: 15  GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVK 74

Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 201
             T N +FNE F  +     L + ++   V D + G  N+ +G L L   ++G    HW 
Sbjct: 75  KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWK 134

Query: 202 DMMKYPDHKHEGIHNLS 218
           ++  +P  +    H L 
Sbjct: 135 EICDFPRRQIAKWHMLC 151

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 49
            T N  F+E   F  +    L   S+  LVLD ++    + +G       
Sbjct: 76  CTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 124

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  158 bits (402), Expect = 6e-50
 Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G++ L+LC++    ++IVN+IK  NL  MD  G SDP++K++L     +  K KT  K +
Sbjct: 3   GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
            LNPIFNE FA +    +L + T++ITV DKD    ND +G + L   S    ++HW DM
Sbjct: 63  NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDM 122

Query: 204 MKYPDHKHEGIHNL 217
           +  P       H L
Sbjct: 123 IARPRQPVAQWHQL 136

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 49
           R +NP F+E   F  +    L   ++ I V+D DK    D +G+      
Sbjct: 62  RNLNPIFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  155 bits (394), Expect = 2e-48
 Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G I  +L +      L V +++  NL  MD  G SDP++K++L  +  + +K KT +K  
Sbjct: 12  GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
           TLNP +NE F+ E    ++ K  +V+TV D D    ND +G + +  NS G  LRHW DM
Sbjct: 72  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131

Query: 204 MKYPDHKHEGIHNL 217
           +  P       H L
Sbjct: 132 LANPRRPIAQWHTL 145

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 49
            T+NP ++E  +F  V    +    + + VLD DK G +D +G+     N
Sbjct: 71  NTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  142 bits (360), Expect = 1e-43
 Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 3/137 (2%)

Query: 69  VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 128
           +        +    + GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L 
Sbjct: 5   IGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 64

Query: 129 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 186
           PD  K+K++T V  KTLNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G   +
Sbjct: 65  PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 123

Query: 187 ELCCNSKGDRLRHWVDM 203
            +     G     W D+
Sbjct: 124 PMNTVDFGHVTEEWRDL 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
           +T+NP F+E+ TF  V  ++L  ++L + V D D++  HD +GE + P+N +
Sbjct: 78  KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  141 bits (358), Expect = 3e-43
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 3/138 (2%)

Query: 69  VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 128
           +    E    +E  + GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L 
Sbjct: 13  LDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 72

Query: 129 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 186
           PD  K+K++T V  KTLNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G   +
Sbjct: 73  PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 131

Query: 187 ELCCNSKGDRLRHWVDMM 204
            +     G     W D+ 
Sbjct: 132 PMNTVDFGHVTEEWRDLQ 149

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 54.7 bits (132), Expect = 7e-10
 Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
           +T+NP F+E+ TF  V  ++L  ++L + V D D++  HD +GE + P+N +
Sbjct: 86  KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  132 bits (334), Expect = 1e-39
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 5/132 (3%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 143
           G+I++       +  LIV +    NL+PMD NG SDP++KL L PD     K KT     
Sbjct: 20  GRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 77

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 202
           +LNP +NE F  + K ++  +  L + +WD D    ND++G L    +  +   +  W  
Sbjct: 78  SLNPEWNETFRFQLKESDKDR-RLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 136

Query: 203 MMKYPDHKHEGI 214
           ++   + ++  +
Sbjct: 137 LLSQEEGEYFNV 148

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 53
            ++NPE++E   F  + E+D   + L + + D D    +DF+G   F ++ L+ 
Sbjct: 77  CSLNPEWNETFRF-QLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQK 128

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  130 bits (329), Expect = 8e-39
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 142
           G+I  +L +  + ++L+V++ +C  L   D +   S+P++K YL PD  ++ K KT +K 
Sbjct: 10  GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69

Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 200
            T+NP+++E    E   + L+++TL  +VW       N +LG  E+  +S     +L H 
Sbjct: 70  DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHC 129

Query: 201 VDMMKYPDHKHEGIH 215
           + +      + EG H
Sbjct: 130 LPLHGKISAESEGHH 144

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
            T+NP + E L +  + E+ L+ ++L   V    ++G + FLGEA   ++  +     D 
Sbjct: 70  DTVNPLYDETLRY-EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDH 128

Query: 60  CLNLCKHYPVPREEE 74
           CL L        E  
Sbjct: 129 CLPLHGKISAESEGH 143

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  129 bits (326), Expect = 1e-38
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 6/129 (4%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWK 143
           G +F +L ++ +++A +VN+ +   L  MD     SDP+IK+ + P+  K K KT V  K
Sbjct: 9   GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRK 67

Query: 144 TLNPIFNEEFAIETK-ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRLRH 199
           TL+P F+E F       T++ +  L  T+   D    +D +G + +  +       ++  
Sbjct: 68  TLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLM 127

Query: 200 WVDMMKYPD 208
             +++  P 
Sbjct: 128 NREIISGPS 136

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 62.4 bits (152), Expect = 9e-13
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
           +T++P F E  TFY +  T +   +LH  +L  D++   D +GE   PL+ +
Sbjct: 67  KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score =  129 bits (326), Expect = 2e-38
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 143
           G+I LT+  S+++  LIV +  C NLI    +G SDP++++YL PD  +  + KT V  K
Sbjct: 11  GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKD--YGKSNDYLGC--LELCCNSKGDRLRH 199
           TLNP+F++ F     + E+ ++TL + V +      K    LG   + L           
Sbjct: 70  TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ 129

Query: 200 WVDMMKYPDHK 210
           W D+ +     
Sbjct: 130 WYDLTEDSGPS 140

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRL 51
           +T+NP F +   F SVS  ++  ++L + V +   +       LG+    L   
Sbjct: 69  KTLNPVFDQSFDF-SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score =  127 bits (320), Expect = 1e-37
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 5/134 (3%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK 143
           G++ + L F      LIV ++   +L   +     +P++K+Y  PD   K K +T    K
Sbjct: 8   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 67

Query: 144 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELCCNS-KGDRLRH 199
           TL P +N+ F        E  ++ L IT+WD+     + +++LG + +   +   D   H
Sbjct: 68  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127

Query: 200 WVDMMKYPDHKHEG 213
           W  +  +      G
Sbjct: 128 WYKLQTHDSGPSSG 141

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 51
           +T+ P++++   +  V   +   + L I + D  +      +FLGE    L   
Sbjct: 67  KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 120

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  126 bits (319), Expect = 2e-37
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           G+I  ++ ++ ++  L V ++K   L   D +G SDPF+K+YL PD  K K +T VK K 
Sbjct: 13  GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 71

Query: 145 LNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWV 201
           LNP +NE F  E     ++ ++ L + V D D    ND +G   + L           W 
Sbjct: 72  LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWK 131

Query: 202 DM 203
           D+
Sbjct: 132 DL 133

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
           + +NP ++E   F       +  + L++ VLD D++  +D +GE   PLN++     +  
Sbjct: 70  KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 129

Query: 60  CLNLCKHYP 68
             +L    P
Sbjct: 130 WKDLKPSGP 138

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  126 bits (318), Expect = 2e-37
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 5/121 (4%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
            K+   L +  +K  L V  ++       + +G  D +++  +       + +T +K + 
Sbjct: 13  PKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69

Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 202
           L+  + E   +     EL   TL +T+   D    +   G   L L   S       W +
Sbjct: 70  LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129

Query: 203 M 203
           +
Sbjct: 130 L 130

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
           R ++  + E L    ++E +L   +L + +   D++  H   GE R  L+  
Sbjct: 68  RQLHTTWEEGLVL-PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score =  125 bits (317), Expect = 4e-37
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 15/129 (11%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD----------LHKR 134
           G+I L + +      LI+++++  NL+P D+NG+SDPF+K+YL P             + 
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64

Query: 135 KYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 191
           K +T    K+LNP +N+    ++  + +L K+TL +TVWD D   SND+LG   ++L   
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

Query: 192 SKGDRLRHW 200
           S  D    W
Sbjct: 125 SHLDNTPRW 133

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 53
           +++NPE+++ + + S+S   L  ++L + V D D++  +DFLGE    L+    
Sbjct: 73  KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH 126

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score =  125 bits (317), Expect = 6e-37
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 77  GEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-- 134
            E E     +I + L +  K +   + +I+ +NL  +         I++ + P       
Sbjct: 22  DESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTC 81

Query: 135 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC---CN 191
            ++T     +   +FNE F +      L ++TL + V   D     + LG  ++      
Sbjct: 82  LFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC 141

Query: 192 SKGDRLRHWVDMM 204
             G+R   W +++
Sbjct: 142 RSGERSTRWYNLL 154

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
            +    F+E     S+S   L  ++L + V   D+    + LG A+  L  +
Sbjct: 90  ASDTLVFNEVFWV-SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV 140

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  124 bits (312), Expect = 2e-36
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 72  EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL 131
           E   +  ++    G +  +L +      L   +I+   L PMDSNG +DP++KL+L P  
Sbjct: 3   EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGA 62

Query: 132 HK-RKYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELC 189
            K  K +T     T NP++NE          ++ ++TL I+V D+D    N+++G     
Sbjct: 63  SKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFS 122

Query: 190 CNSKGDRLRHWVDM 203
                   R   ++
Sbjct: 123 LKKLKANQRKNFNI 136

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 22/66 (33%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
            T NP ++E L ++ ++E D+  ++L I V D+DK+G ++F+GE RF L +L+ +  ++ 
Sbjct: 75  NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNF 134

Query: 60  CLNLCK 65
            + L +
Sbjct: 135 NICLER 140

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score =  120 bits (303), Expect = 6e-35
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPM-------DSNGFSDPFIKLYLKPDLHKRKYK 137
           G +  +  +      L V +I+  +L P             S+P++K+ L PD  K   +
Sbjct: 13  GMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD-QKNSKQ 71

Query: 138 TGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGD 195
           TGVK KT  P+F E +  E    E  ++TL++TV D D    +  +G   + LC      
Sbjct: 72  TGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK 131

Query: 196 RLRHWVDM 203
               W  +
Sbjct: 132 GGHWWKAL 139

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
           +T  P F E+ TF  +   +   ++L + V+D DK+  H  +G+   PL  +
Sbjct: 77  KTQKPVFEERYTF-EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score =  119 bits (301), Expect = 7e-35
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 143
           G++ + L F      LIV ++   +L   +     +P++K+Y  PD   K K +T    K
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64

Query: 144 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELC-CNSKGDRLRH 199
           TL P +N+ F        E  ++ L IT+WD+     + +++LG + +    +  D   H
Sbjct: 65  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124

Query: 200 WVDM 203
           W  +
Sbjct: 125 WYKL 128

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 51
           +T+ P++++   +  V   +   + L I + D  +      +FLGE    L   
Sbjct: 64  KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 117

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  115 bits (289), Expect = 1e-32
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 15/137 (10%)

Query: 83  QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 141
             G   L L    + R L++++I+   LI     G  DP++K+ L P+  +    KT   
Sbjct: 12  VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTV 70

Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKD-YGKSNDYLGCLELCCNSKGDRLRHW 200
               +P F+E F    +  +  K  L++TVW++    + +  +GC+              
Sbjct: 71  PDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQSGLIGCMSFG----------- 118

Query: 201 VDMMKYPDHKHEGIHNL 217
           V  +  PD +  G + L
Sbjct: 119 VKSLLTPDKEISGWYYL 135

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--HDFLGEARFPLNRL 51
              +P FHE   F  V E D   + L + V +          +G   F +  L
Sbjct: 72  DCRDPAFHEHFFF-PVQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score =  108 bits (273), Expect = 1e-30
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G + L++ +  +   L + ++   +L+  D     +P++K YL PD HK  K KT +  K
Sbjct: 9   GAVKLSVSY--RNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISRK 65

Query: 144 TLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 200
           T NP FNE           L ++ L ++V   +  + N +LG + L             W
Sbjct: 66  TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKW 125

Query: 201 VDM 203
             +
Sbjct: 126 YQL 128

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
           +T NP F+E L +   S+  L  + L + VL  +    + FLG    PL   
Sbjct: 65  KTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  105 bits (265), Expect = 3e-29
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 85  GKIFLTLCFSTKK-RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVK 141
                 L    +  R + V +I    L   D  G SDP++++ L   ++      +T   
Sbjct: 6   AVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTI 65

Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
            K+LNP +NEE        +     L+  V+D++    +D+LG +++
Sbjct: 66  KKSLNPKWNEEILFRVHPQQ---HRLLFEVFDENRLTRDDFLGQVDV 109

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 54.4 bits (131), Expect = 9e-10
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 12/95 (12%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
           +++NP+++E++ F    +       L   V D+++    DFLG+   PL  L     R  
Sbjct: 67  KSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLE 122

Query: 60  CLNLCKHYPV-PREEEVWGEEECWQHGKIFLTLCF 93
                K + + PR  +          G + L + +
Sbjct: 123 RPYTFKDFVLHPRSHKSRV------KGYLRLKMTY 151

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score =  105 bits (263), Expect = 9e-29
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 142
           G I + +    KK  L V +I+  +L     S     P++K+YL  +     K KT +  
Sbjct: 19  GDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR 76

Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVW-DKDYGKSNDYLGCLE--LCCNSKGDRLRH 199
           KTL+P++ +    +        + L + VW D        ++G  +  L        +  
Sbjct: 77  KTLDPLYQQSLVFD---ESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIG 133

Query: 200 W 200
           W
Sbjct: 134 W 134

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDD-DKYG-HDFLGEARFPLNRLRP 53
           +T++P + + L F    +     + L ++V  D  +     F+G A+  L  L  
Sbjct: 77  KTLDPLYQQSLVF----DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL 127

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =   99 bits (249), Expect = 1e-26
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFNEEFAIET 157
           + V +I    L   D  G SDP++++ L   +       +T    K+LNP +NEE     
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69

Query: 158 KITELSKQTLVITVWDKDYGKSNDYLGCLEL------CCNSKGDRLRHWVDMMKYPDHKH 211
                    ++  V+D++    +D+LG +++        N + +R   + D + +P    
Sbjct: 70  LPQR---HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126

Query: 212 E 212
            
Sbjct: 127 S 127

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 61.4 bits (149), Expect = 4e-12
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 10/111 (9%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
           +++NP+++E++ F  + +       +   V D+++    DFLG+   PL  L     R  
Sbjct: 55  KSLNPKWNEEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRME 110

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNL 110
                K + +               G + L + +  K  +   N  +   L
Sbjct: 111 RPYTFKDFVLHPRSHKSRV-----KGYLRLKMTYLPKNGSEDENADQAEEL 156

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 96.6 bits (241), Expect = 8e-26
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V ++K  +L+  D +G SDPF  L L  D    + +T   +K LNP +N+ F    K 
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLELGND----RLQTHTVYKNLNPEWNKVFTFPIKD 70

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 210
                  L +TV+D+D  K  D+LG + +   S  D   +   +      +
Sbjct: 71  IH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQ 118

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
           + +NPE+++  TF  + +       L + V D+D     DFLG+   PL  +R       
Sbjct: 54  KNLNPEWNKVFTF-PIKDIH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCY 109

Query: 60  CLNLCKHYPVPR 71
            L         +
Sbjct: 110 VLKNKDLEQAFK 121

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 93.2 bits (232), Expect = 2e-24
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V +   +N+ P    G  DP + +  K +    K KT      LNP++NE    + + 
Sbjct: 9   LRVIVESASNI-PKTKFGKPDPIVSVIFKDE----KKKTKKVDNELNPVWNEILEFDLRG 63

Query: 160 TEL-SKQTLVITVWDKDYGKSNDYLGC--LELCCNSKGDRLRHWVDMMKYPDHKHE 212
             L    +L I V D +    N  +G   + L   +          ++   + K +
Sbjct: 64  IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ 119

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
             +NP ++E L F           SL I+V D +  G +  +G A   L  L    SR L
Sbjct: 47  NELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSL 106

Query: 60  CLNLCK 65
              L  
Sbjct: 107 PYKLIS 112

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 92.0 bits (229), Expect = 4e-24
 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 100 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 156
             V +++ T +      D     DP+++L++       + +T      +NP++NE F   
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEF- 62

Query: 157 TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 202
             +    +  L IT+ D +Y   ++ LG     +     G++      
Sbjct: 63  -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFI 108

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLC 60
             INP ++E   F            L I ++D +    + LG A F ++ ++    +++ 
Sbjct: 50  NDINPVWNETFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVP 106

Query: 61  LNL 63
              
Sbjct: 107 FIF 109

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 89.7 bits (223), Expect = 3e-23
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 9/121 (7%)

Query: 95  TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 154
           ++   + + ++   NL   D     DPF K+ +      + + T     TL+P +N+ + 
Sbjct: 2   SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS--GQCHSTDTVKNTLDPKWNQHYD 59

Query: 155 IETKITELSKQTLVITVWDKDYGKSND---YLGCLELCCNSKGDRLRHWVDMMKYPDHKH 211
           +          ++ I+VW+           +LGC+ L  N+           +       
Sbjct: 60  LYVG----KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP 115

Query: 212 E 212
            
Sbjct: 116 S 116

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 19/96 (19%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD----FLGEARFPLNRLRPH-I 55
            T++P++++    Y          S+ I V +  K        FLG  R   N +     
Sbjct: 48  NTLDPKWNQHYDLYVGKT-----DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKD 102

Query: 56  SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 91
           +    L+LCK  P          +     G+I ++L
Sbjct: 103 TGYQRLDLCKLNP---------SDTDAVRGQIVVSL 129

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 85.5 bits (212), Expect = 2e-21
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V L+    L   D     DP+++L  +      +     +     P +NE F     +
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ---DQKSNVAEGMGTTPEWNETFIF--TV 66

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLEL 188
           +E + + L   ++DKD G  +D +G   +
Sbjct: 67  SEGTTE-LKAKIFDKDVGTEDDAVGEATI 94

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
               PE++E   F +VSE       L   + D D     D +GEA  PL  +    S   
Sbjct: 52  MGTTPEWNETFIF-TVSEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP 107

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 93
                  Y V ++EE          G+I++ L F
Sbjct: 108 TA-----YNVVKDEEY--------KGEIWVALSF 128

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 84.5 bits (209), Expect = 4e-21
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 18/112 (16%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           + + ++    L   D  G SDP++ + +     K K +T   +  LNP++ E F  E   
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVG----KTKKRTKTIYGNLNPVWEENFHFECH- 73

Query: 160 TELSKQTLVITVWDKDYGK-----------SNDYLGCLELCCNSKGDRLRHW 200
              S   + + V D+D              S+D+LG   +   +    +  W
Sbjct: 74  --NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVW 123

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 39/113 (34%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG------------HDFLGEARFPL 48
             +NP + E   F   + +D     + + VLD+D                DFLG+    +
Sbjct: 58  GNLNPVWEENFHFECHNSSD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV 113

Query: 49  NRLRPHISRDLCLNLCKHYPVPREEEVW-----GEEECWQHGKIFLTLCFSTK 96
             L                    E +VW       ++    G I L +    K
Sbjct: 114 RTL------------------SGEMDVWYNLDKRTDKSAVSGAIRLHISVEIK 148

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 81.1 bits (200), Expect = 2e-19
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L + +I         +     P++++ +      +  KT     T +P + +   +    
Sbjct: 38  LQITVISAKLKENKKNWFGPSPYVEVTVD----GQSKKTEKCNNTNSPKWKQPLTVIVT- 92

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYP 207
                  L   VW     KS+  LG   L            ++ +   
Sbjct: 93  ---PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVT 137

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
            T +P++ + LT   V+        LH  V           LG A   +       +  L
Sbjct: 77  NTNSPKWKQPLTV-IVTPVS----KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKL 131

Query: 60  C 60
            
Sbjct: 132 E 132

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 72.7 bits (178), Expect = 2e-16
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 17/99 (17%)

Query: 100 LIVNLIKCTNLIPMD----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF 149
           L V + +   L P             +   DP++ + +      R  +T  K KT  P +
Sbjct: 31  LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD---QVRVGQTSTKQKTNKPTY 87

Query: 150 NEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
           NEEF             L + V+ +     + ++    L
Sbjct: 88  NEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTL 122

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 20/95 (21%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
           +T  P ++E+    +V++       L + V  +   G   F+                  
Sbjct: 81  KTNKPTYNEEFCA-NVTDG----GHLELAVFHETPLGYDHFVANCTLQFQ---------- 125

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 94
              L +        E W + E    GK+F+ +  +
Sbjct: 126 --ELLRTTGASDTFEGWVDLE--PEGKVFVVITLT 156

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 76.5 bits (187), Expect = 2e-16
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 100 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 156
             V +++ T +      D     DP+++L++       + +T      +NP++NE F   
Sbjct: 20  FTVVVLRATKVTKGAFGDMLDTPDPYVELFI-STTPDSRKRTRHFNNDINPVWNETFEF- 77

Query: 157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN 216
             +    +  L IT+ D +Y   ++ LG      +S     +  V  +     +     +
Sbjct: 78  -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 135

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 43.4 bits (101), Expect = 4e-05
 Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLC 60
             INP ++E   F            L I ++D +    + LG A F ++ ++    +++ 
Sbjct: 65  NDINPVWNETFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVP 121

Query: 61  LNLCKHYPVPREEEVWGEEECWQHGKIFLTLC---FSTKKRALIVNLIKCTNLIPMDSNG 117
               +   +  E  +           + L      F  +++  I   +K           
Sbjct: 122 FIFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGL 181

Query: 118 FSDPFIK 124
            S   + 
Sbjct: 182 HSARDVP 188

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 69.9 bits (171), Expect = 1e-15
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 22/118 (18%)

Query: 100 LIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPI 148
           L + + +  +L P                  DP+I L +      R  +T  K KT +P 
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD---DSRIGQTATKQKTNSPA 64

Query: 149 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS----KGDRLRHWVD 202
           +++EF  +      + + + + V+       +D++    +               W+D
Sbjct: 65  WHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 22/95 (23%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
           +T +P +H++     V       + + + V  D   G  DF+         L  + SR  
Sbjct: 59  KTNSPAWHDEFVT-DVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF 113

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 94
                         E W + E    GK+++ +  S
Sbjct: 114 --------------EDWIDLE--PEGKVYVIIDLS 132

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 64.9 bits (157), Expect = 2e-12
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 6/125 (4%)

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
           C   C+        +    E                    L+V+  +  +L    +    
Sbjct: 356 CSRPCRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYT---- 411

Query: 120 DPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
                 YLK     ++++TGV W   NP + ++   E  +   +   L + VWD DYG  
Sbjct: 412 -TATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFEN-VLLSTGGPLRVQVWDADYGWD 469

Query: 180 NDYLG 184
           +D LG
Sbjct: 470 DDLLG 474

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 12/89 (13%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V + K       +     + ++ L ++      K  T    +   P + ++F  E  I
Sbjct: 7   LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVKSTTIAV-RGSQPSWEQDFMFE--I 56

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLEL 188
             L    L + VW+K     +  +G + +
Sbjct: 57  NRLDLG-LTVEVWNKGLIW-DTMVGTVWI 83

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 25/114 (21%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V + K       +     + ++ L ++      +  T +  +   P + ++F  E   
Sbjct: 16  LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVESTT-IAVRGSQPSWEQDFMFEINR 67

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEG 213
            +L    L + VW+K     +  +G               W+ +        EG
Sbjct: 68  LDLG---LTVEVWNKGLIW-DTMVG-------------TVWIPLRTIRQSNEEG 104

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 96  KKRALIVNLIKCTNLIPMDSNGFS--DPFIKLYL---KPDLHKRKYKTGVKWKTLNPIFN 150
           +   L V +I    L  ++ N  S  DP + + +     D   R+    +     NP ++
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAV-ITNNGFNPRWD 553

Query: 151 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDR 196
            EF  E  + +L+   +   V D D    ND++G   +      +G R
Sbjct: 554 MEFEFEVTVPDLA--LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR 599

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 8/119 (6%)

Query: 98  RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET 157
             L + +I+   L P         + +L L   L+ R              + E F    
Sbjct: 11  NVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNN 65

Query: 158 KITELSKQTLVITVWDKDYGKSND-YLGCLE--LCCNSKGDRLRHWVDMMKYPDHKHEG 213
                + +  +    DK   K    Y+G +   +   +       W  +         G
Sbjct: 66  LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSG 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	100.0
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.97
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.97
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.97
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.94
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.93
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.93
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.93
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.92
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.92
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.92
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.92
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.92
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.92
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.92
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.92
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.91
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.91
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.91
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.91
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.9
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.89
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.88
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.85
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.84
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.84
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.83
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.82
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.82
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.81
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.8
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.8
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.78
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.76
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.75
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.69
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.65
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.64
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.62
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.62
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.61
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.6
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.6
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.48
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.46
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.45
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.44
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.43
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.41
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.4
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.39
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.37
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.37
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.36
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.35
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.35
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.34
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.34
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.32
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.32
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.32
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.32
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.31
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.3
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.3
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.29
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.27
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.26
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.25
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.24
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.23
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.23
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.22
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.2
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.19
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.19
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.17
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.17
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.16
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.14
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.13
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.12
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.12
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	98.94
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	98.75
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	98.73
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.66
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	98.61
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	98.6
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.57
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.48
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.42
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.24
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.2
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.14
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.08
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	97.11
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	96.01
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	94.96
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	94.57
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	93.14
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	91.35

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=1.4e-41  Score=272.93  Aligned_cols=209  Identities=33%  Similarity=0.529  Sum_probs=184.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.| .++..++....|+|.|||+|.+++ ++||++.++|.++........|.+|....          ..
T Consensus        63 ~~~nP~wne~f~f-~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~----------~~  131 (284)
T 2r83_A           63 KTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE----------KE  131 (284)
T ss_dssp             SCSSCEEEEEEEE-CCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCS----------SC
T ss_pred             CCCCCeeCceEEE-EechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccc----------cc
Confidence            5799999999999 688888878899999999999988 99999999999997766666666554311          01


Q ss_pred             cceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137         80 ECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK  158 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~  158 (224)
                      .....|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+.+.. .+++|++++++.||.|||+|.|.+.
T Consensus       132 ~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~  211 (284)
T 2r83_A          132 EQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP  211 (284)
T ss_dssp             CCCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECC
T ss_pred             cccccccEEEEEEecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCC
Confidence            134679999999999999999999999999999998899999999998764323 5789999999999999999999998


Q ss_pred             cCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        159 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       159 ~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      ..++....|.|+|||++.++++++||++.|++++.+.+++||.+|+..|+..+++||+|.+.
T Consensus       212 ~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             TTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             HHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            77777778999999999999999999999999998889999999999999999999999975

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=1e-40  Score=269.29  Aligned_cols=210  Identities=30%  Similarity=0.482  Sum_probs=177.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEee-ccccCC-CcccceeecccccccCCCcccccC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFP-LNRLRP-HISRDLCLNLCKHYPVPREEEVWG   77 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~-l~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~   77 (224)
                      +|+||+|||+|.| .++..++....|+|.|||+|.+++ ++||++.++ +.++.. ......|.++..      .     
T Consensus        64 ~t~nP~wne~f~f-~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~------~-----  131 (296)
T 1dqv_A           64 KTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE------G-----  131 (296)
T ss_dssp             SCSSCEEEEEEEE-ECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC------C-----
T ss_pred             CCCCCcEeeEEEE-EecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccc------c-----
Confidence            5899999999999 688888878899999999999998 999999996 444432 223344444432      1     


Q ss_pred             cccceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEE
Q psy12137         78 EEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE  156 (224)
Q Consensus        78 ~~~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~  156 (224)
                      .......|+|.+++.|.+..+.|.|.|++|++|+.++..|.+||||++++.+++.. .+++|++++++.||.|||+|.|.
T Consensus       132 ~~~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~  211 (296)
T 1dqv_A          132 GSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD  211 (296)
T ss_dssp             SSCCSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC
T ss_pred             cccccccceEEEEEEeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEE
Confidence            11235679999999999999999999999999999988899999999998754333 78899999999999999999999


Q ss_pred             eecCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCC-ccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGD-RLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       157 ~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~-~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                      +....+....|.|+|||++.++++++||++.|++.+.+. +..||++|+.+|++.+++||+|.+...
T Consensus       212 v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~~  278 (296)
T 1dqv_A          212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKT  278 (296)
T ss_dssp             CCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBCC-
T ss_pred             cCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCccc
Confidence            877777667899999999999999999999999998876 899999999999999999999997654

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=100.00  E-value=9e-32  Score=193.37  Aligned_cols=136  Identities=38%  Similarity=0.637  Sum_probs=126.3

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      +|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+..+. .+++|++++++.||.|||+|.|.+....+
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l   81 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKL   81 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhc
Confidence            69999999999999999999999999999988889999999999765433 68899999999999999999999987777


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      ....|.|+|||++.++++++||++.|++++.+.+.+||++|+..|++.+++||+|.|
T Consensus        82 ~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~p  138 (138)
T 3n5a_A           82 RETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLKA  138 (138)
T ss_dssp             GGEEEEEEEEECCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CceEEEEEEEECCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCCCeEEEEeecCC
Confidence            778999999999999899999999999999888999999999999999999999987

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.97  E-value=6.3e-31  Score=192.30  Aligned_cols=141  Identities=28%  Similarity=0.458  Sum_probs=120.8

Q ss_pred             cceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137         80 ECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK  158 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~  158 (224)
                      .....|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+++.. .+++|++++++.||.|||+|.|.+.
T Consensus        12 ~~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~   91 (153)
T 1w15_A           12 IPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP   91 (153)
T ss_dssp             ----CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECC
T ss_pred             CCccccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECC
Confidence            346789999999999999999999999999999988899999999999764322 4789999999999999999999998


Q ss_pred             cCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        159 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       159 ~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      ..++....|.|+|||++.++++++||++.|++...+.+..||++|+..|++.+++||+|.+.
T Consensus        92 ~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~p~~~~~~Wh~L~~~  153 (153)
T 1w15_A           92 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCDG  153 (153)
T ss_dssp             SSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBCC
T ss_pred             HHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCchHHHHHHHHHhCCCCeeeeccccccC
Confidence            77776689999999999998999999999999998889999999999999999999999873

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.97  E-value=1.9e-30  Score=190.97  Aligned_cols=140  Identities=34%  Similarity=0.545  Sum_probs=128.7

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeec
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  159 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~  159 (224)
                      ....|+|.+++.|.+..+.|.|.|++|+||+..+..|.+||||++++.+.+.. .+++|++++++.||.|||+|.|.+..
T Consensus         8 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   87 (159)
T 1tjx_A            8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF   87 (159)
T ss_dssp             GGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred             cCcCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCH
Confidence            46789999999999999999999999999999998899999999999764322 67899999999999999999999977


Q ss_pred             CcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       160 ~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      .++....|.|+|||++.++++++||++.|++.+.+.+++||++|+..|++.+++||+|.+.
T Consensus        88 ~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~  148 (159)
T 1tjx_A           88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (159)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             HHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence            7777778999999999998999999999999998899999999999999999999999874

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.97  E-value=2.5e-30  Score=191.55  Aligned_cols=142  Identities=49%  Similarity=0.829  Sum_probs=127.6

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeec
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  159 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~  159 (224)
                      ....|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+..+. ..++|++++++.||.|||+|.|.+..
T Consensus        20 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   99 (166)
T 2cm5_A           20 IEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH   99 (166)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred             cCccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcch
Confidence            46789999999999999999999999999999988899999999999764433 78999999999999999999999977


Q ss_pred             CcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       160 ~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                      .++....|.|+|||++.++++++||++.|++.+.+.+..||++|+..+++.+++||+|.+...
T Consensus       100 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~~~~  162 (166)
T 2cm5_A          100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENH  162 (166)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC---
T ss_pred             HhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCCccc
Confidence            677778999999999999899999999999999888899999999999999999999996554

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=7.6e-26  Score=165.29  Aligned_cols=129  Identities=18%  Similarity=0.196  Sum_probs=109.4

Q ss_pred             cceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEe
Q psy12137         80 ECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIET  157 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~  157 (224)
                      .....|+|++++.|.+..+.|.|.|++|+||+.++..|.+||||++++.+..+.  .+++|++++++.||+|||+|.|.+
T Consensus        25 ~~~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v  104 (155)
T 2z0u_A           25 EAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSM  104 (155)
T ss_dssp             ---CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEEC
T ss_pred             CcCCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEc
Confidence            346789999999999999999999999999999998999999999999764322  589999999999999999999999


Q ss_pred             ecCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        158 KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       158 ~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      ...++....|.|+|||++.++++++||++.+++....           ..+....+|+.|+|
T Consensus       105 ~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~-----------~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          105 SYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC-----------RSGERSTRWYNLLS  155 (155)
T ss_dssp             CHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSC-----------TTCCCEEEEEEEBC
T ss_pred             CHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHcc-----------CCCCccccceEccC
Confidence            7666667899999999999999999999999998742           11345667777764

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.93  E-value=2.4e-25  Score=161.68  Aligned_cols=130  Identities=29%  Similarity=0.464  Sum_probs=111.1

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK  158 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~  158 (224)
                      ....|+|.+++.|.+..+.|.|.|++|++|+..+ ..|.+||||++++.+.... .+++|++++++.||.|||+|.|.+.
T Consensus         6 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~   85 (148)
T 3fdw_A            6 IFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIP   85 (148)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECC
T ss_pred             CccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeC
Confidence            3678999999999999999999999999999887 5789999999999765533 6899999999999999999999998


Q ss_pred             cCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        159 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       159 ~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                      ..++....|.|+|||++.++++++||++.|++....            .+....+|++|.+++.
T Consensus        86 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~L~~~~~  137 (148)
T 3fdw_A           86 ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWK------------LDKKLDHCLPLHGKIS  137 (148)
T ss_dssp             STTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHH------------HHCCSEEEEECBCC--
T ss_pred             hhHhCceEEEEEEEECCCCcCCcEEEEEEEEccccc------------ccCCccceEECcCccc
Confidence            777777889999999999989999999999987632            1224568888887654

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.93  E-value=1.3e-24  Score=158.42  Aligned_cols=127  Identities=34%  Similarity=0.549  Sum_probs=110.5

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecC
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT  160 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~  160 (224)
                      ....|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+.. +.+++|++++++.||.|||+|.|.+...
T Consensus        25 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~  103 (152)
T 1rsy_A           25 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYS  103 (152)
T ss_dssp             -CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC-CSCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred             CCCceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCC-CceEeccccCCCCCCcCcccEEEeecHH
Confidence            467899999999999999999999999999999888999999999987543 4788999999999999999999998766


Q ss_pred             cccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        161 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       161 ~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      ++....|.|+|||++.++++++||++.|++....            .+..+..|++|.+.
T Consensus       104 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD------------FGHVTEEWRDLQSA  151 (152)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCC------------CSSCEEEEEECBCC
T ss_pred             HcCCCEEEEEEEECCCCCCCcEEEEEEEEchhcc------------CCCCcceEEECCCC
Confidence            6666899999999999989999999999998743            24467788888764

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.93  E-value=1.1e-24  Score=157.34  Aligned_cols=127  Identities=34%  Similarity=0.557  Sum_probs=111.7

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecC
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT  160 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~  160 (224)
                      ....|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+...
T Consensus        17 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~   95 (143)
T 3f04_A           17 VEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYS   95 (143)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCC-SCCEECCCCCSCSSCEEEEEEEECCCHH
T ss_pred             ccCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCC-CccEECccCcCCCCCcCcCeEEEeecHh
Confidence            467899999999999999999999999999998888899999999987543 4789999999999999999999998766


Q ss_pred             cccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        161 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       161 ~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      ++....|.|+|||++.++++++||++.|++....            .+.....|++|+|.
T Consensus        96 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~L~~~  143 (143)
T 3f04_A           96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD------------FGHVTEEWRDLQSA  143 (143)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCC------------TTSCEEEEEECBCC
T ss_pred             hcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHcc------------CCCCcceEEECcCC
Confidence            6666899999999999989999999999998743            34467788888763

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=2.5e-24  Score=154.99  Aligned_cols=130  Identities=31%  Similarity=0.409  Sum_probs=111.3

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEe-ec
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET-KI  159 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~-~~  159 (224)
                      ....|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.++. ...++|++++++.||.|||+|.|.+ +.
T Consensus         9 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~~~~~   87 (141)
T 2d8k_A            9 RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDK-KHKLETKVKRKNLNPHWNETFLFEGFPY   87 (141)
T ss_dssp             CCCCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCC-SSEEECCCCTTCSSCCCCEEEEECSCCH
T ss_pred             CceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCC-CccEeCceEcCCCCCccccEEEECccCH
Confidence            356899999999999999999999999999999888999999999987543 4789999999999999999999984 43


Q ss_pred             CcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCCC
Q psy12137        160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLS  223 (224)
Q Consensus       160 ~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~~  223 (224)
                      ..+....|.|+|||++.++++++||++.|++.....            +.....|++|.|....
T Consensus        88 ~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~------------~~~~~~W~~L~~~~~~  139 (141)
T 2d8k_A           88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL------------TQMQTFWKDLKPSGPS  139 (141)
T ss_dssp             HHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCT------------TSCEEEEECCEECCCC
T ss_pred             HHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcC------------CCCccEEEECcCCCCC
Confidence            445567899999999999899999999999987431            2357788888877654

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.92  E-value=5.5e-24  Score=152.68  Aligned_cols=132  Identities=27%  Similarity=0.365  Sum_probs=111.8

Q ss_pred             ccceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEE-
Q psy12137         79 EECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-  156 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~-g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~-  156 (224)
                      ......|+|.+++.|.+..+.|.|.|++|++|+..+.. +.+||||++++.++. ...++|++++++.||.|||+|.|. 
T Consensus         3 ~~~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~~   81 (138)
T 1ugk_A            3 SGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK-KHKVKTRVLRKTLDPAFDETFTFYG   81 (138)
T ss_dssp             CCCCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTT-CSEEECCCCSSCSSCEEEEEEEEEC
T ss_pred             CCCCccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCC-CceEecCcCcCCCCCcEeeEEEEcC
Confidence            34567899999999999999999999999999998875 889999999987543 489999999999999999999996 


Q ss_pred             eecCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       157 ~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                      ++..++....|.|+|||++.++++++||++.|++.....           .......|+.|.+.+.
T Consensus        82 v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~-----------~~~~~~~~~~l~~~~~  136 (138)
T 1ugk_A           82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL-----------SEGKMLMNREIISGPS  136 (138)
T ss_dssp             CCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCC-----------TTCCEEEEEECBSSSS
T ss_pred             cCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccC-----------CCCcchhhhhhhcCCC
Confidence            776667778999999999999899999999999987431           1234566777776654

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.92  E-value=1.4e-24  Score=158.56  Aligned_cols=128  Identities=25%  Similarity=0.422  Sum_probs=107.7

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeec
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  159 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~  159 (224)
                      ....|++.+++.|.+..+.|.|.|++|++|+..+ .|.+||||++++.+.... .+++|++++++.||.|||+|.|.+..
T Consensus        10 ~~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   88 (153)
T 3fbk_A           10 HKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE   88 (153)
T ss_dssp             ---CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCG
T ss_pred             cCCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEeccc
Confidence            4788999999999999999999999999999988 689999999999765433 78999999999999999999999876


Q ss_pred             CcccccEEEEEEEECCCCCC-CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137        160 TELSKQTLVITVWDKDYGKS-NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  221 (224)
Q Consensus       160 ~~~~~~~l~i~v~~~~~~~~-~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~  221 (224)
                      .++. ..|.|+|||++.+++ +++||++.|++...           ..++..+.+||+|.+..
T Consensus        89 ~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l-----------~~~~~~~~~W~~L~~~~  139 (153)
T 3fbk_A           89 EDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSL-----------LTPDKEISGWYYLLGEH  139 (153)
T ss_dssp             GGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHHH-----------TC--CCEEEEEECBCTT
T ss_pred             HHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHHh-----------cCCCCccccEEECCChh
Confidence            6665 459999999998876 89999999998752           23466788999998754

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=2.8e-24  Score=154.94  Aligned_cols=124  Identities=32%  Similarity=0.548  Sum_probs=104.5

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeec
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  159 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~  159 (224)
                      ....|+|.+++.|.+..+.|.|.|++|++|+..+..| +||||++++.+.... .+++|++++++.||.|||+|.|.+..
T Consensus         7 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   85 (142)
T 2dmg_A            7 GSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL   85 (142)
T ss_dssp             SCSSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCH
T ss_pred             CCCcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecH
Confidence            4678999999999999999999999999999998888 999999999765433 78999999999999999999999876


Q ss_pred             CcccccEEEEEEEECCCCCC--CceeEEEEEecCCCC--Cccchhhhhhc
Q psy12137        160 TELSKQTLVITVWDKDYGKS--NDYLGCLELCCNSKG--DRLRHWVDMMK  205 (224)
Q Consensus       160 ~~~~~~~l~i~v~~~~~~~~--~~~lG~~~l~l~~~~--~~~~~w~~l~~  205 (224)
                      .++....|.|+|||++.+++  +++||++.|++....  ....+|++|..
T Consensus        86 ~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~  135 (142)
T 2dmg_A           86 PEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE  135 (142)
T ss_dssp             HHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred             HHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence            66666799999999998753  479999999998743  23444544443

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.92  E-value=6e-24  Score=152.49  Aligned_cols=125  Identities=18%  Similarity=0.179  Sum_probs=106.6

Q ss_pred             eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137         82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE  161 (224)
Q Consensus        82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~  161 (224)
                      ...|+|++++.|....+.|.|.|++|++   ++..|.+||||++++.+..++.+++|++++++.||.|||+|.|.+...+
T Consensus        10 ~~~G~l~~sl~y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~   86 (138)
T 1wfm_A           10 NQAPKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE   86 (138)
T ss_dssp             SSCCEEEEEEEEETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred             CcceEEEEEEEEeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHH
Confidence            5689999999999999999999999994   5677899999999997644346789999999999999999999998777


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  221 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~  221 (224)
                      +....|.|+|||++.++++++||++.++|....            .+.....|+.|.+.+
T Consensus        87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~------------~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A           87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS------------VPLGAAQWGELKTSG  134 (138)
T ss_dssp             STTCEEEEEEEECCSSCTTSCSEEEEEESSSSS------------SCTTCCEEEECCCCS
T ss_pred             cCCCEEEEEEEECCCCCCCcEEEEEEEEccccc------------CcccccceeeCcCCC
Confidence            777899999999999999999999999998753            123456677776544

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.92  E-value=5.6e-24  Score=150.83  Aligned_cols=123  Identities=24%  Similarity=0.418  Sum_probs=102.0

Q ss_pred             eceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEE-eecC
Q psy12137         83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIE-TKIT  160 (224)
Q Consensus        83 ~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~-~~~~  160 (224)
                      ..|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.++.. ..+++|++++++.||.|||+|.|. +...
T Consensus         3 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   82 (129)
T 2bwq_A            3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR   82 (129)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred             eeEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence            57999999999999999999999999999998889999999999976543 388999999999999999999999 4545


Q ss_pred             cccccEEEEEEEECCCCCC--CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        161 ELSKQTLVITVWDKDYGKS--NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       161 ~~~~~~l~i~v~~~~~~~~--~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      ++....|.|+|||++.+++  +++||++.+++.....             ....+||+|+
T Consensus        83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~-------------~~~~~W~~Lq  129 (129)
T 2bwq_A           83 EFRERMLEITLWDQARVREEESEFLGEILIELETALL-------------DDEPHWYKLQ  129 (129)
T ss_dssp             GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCC-------------SSCEEEEECC
T ss_pred             HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCC-------------CcCCccEECc
Confidence            5666899999999999876  8999999999986431             1267788874

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=3e-24  Score=155.71  Aligned_cols=131  Identities=27%  Similarity=0.346  Sum_probs=110.5

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCC-CCC------CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEE
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPM-DSN------GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEF  153 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~-~~~------g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f  153 (224)
                      ....|+|.+++.|.+..+.|.|.|++|++|+.. +.+      +.+||||++++.+.. +.+++|++++++.||+|||+|
T Consensus         9 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f   87 (147)
T 2enp_A            9 KYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQ-KNSKQTGVKRKTQKPVFEERY   87 (147)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCC-SSCEECCCCCSCSSCCCCBCC
T ss_pred             CCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCC-CcceEeecccCCCCCeEeeeE
Confidence            478999999999999999999999999999984 333      589999999997643 468899999999999999999


Q ss_pred             EEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCCCC
Q psy12137        154 AIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLSS  224 (224)
Q Consensus       154 ~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~~~  224 (224)
                      .|.+...++....|.|+|||++.++++++||++.|++.....            ......|+.|.|+..+|
T Consensus        88 ~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~------------~~~~~~w~~L~~~~~~~  146 (147)
T 2enp_A           88 TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL------------VKGGHWWKALIPSGPSS  146 (147)
T ss_dssp             EECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCT------------TTCCCEEECCBCCCCCC
T ss_pred             EEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCC------------CCCccEEEEeecCCCCC
Confidence            999876566667999999999999999999999999987431            22346788888876553

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.92  E-value=9.2e-24  Score=150.76  Aligned_cols=124  Identities=25%  Similarity=0.369  Sum_probs=103.1

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEE-eecCcc
Q psy12137         85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKITEL  162 (224)
Q Consensus        85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~-~~~~~~  162 (224)
                      |...+.+.|....+.|.|.|++|++|+. +..|.+||||++++.++... .+++|++++++.||.|||+|.|. +...++
T Consensus         7 ~~~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l   85 (134)
T 2b3r_A            7 GSGAVKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETL   85 (134)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHH
T ss_pred             ccEEEEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHh
Confidence            4445566666678999999999999997 67789999999999765433 78899999999999999999999 876666


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  221 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~  221 (224)
                      ....|.|+|||++.++++++||++.|++....            .+....+|++|.+.+
T Consensus        86 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~------------~~~~~~~W~~L~~~~  132 (134)
T 2b3r_A           86 RQRELQLSVLSAESLRENFFLGGITLPLKDFN------------LSKETVKWYQLTAAT  132 (134)
T ss_dssp             TTCEEEEEEEECCSSSCCEEEEEEEEEGGGSC------------TTSCEEEEEECBC--
T ss_pred             CcCEEEEEEEECCCCCCCcEEEEEEEEhhhcc------------CCCCcceeEECCCcc
Confidence            67899999999999989999999999998743            244678999998764

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.91  E-value=7.3e-24  Score=152.49  Aligned_cols=128  Identities=23%  Similarity=0.388  Sum_probs=109.6

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEE-ee
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIE-TK  158 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~-~~  158 (224)
                      ....|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+... ...++|++++++.||+|||+|.|. +.
T Consensus         4 ~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~   83 (141)
T 1v27_A            4 GSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH   83 (141)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCC
T ss_pred             CCcccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCC
Confidence            3578999999999999999999999999999999889999999999876543 378999999999999999999999 55


Q ss_pred             cCcccccEEEEEEEECCCCCC--CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137        159 ITELSKQTLVITVWDKDYGKS--NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  221 (224)
Q Consensus       159 ~~~~~~~~l~i~v~~~~~~~~--~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~  221 (224)
                      ..++....|.|+|||++.+++  +++||++.|++....             .....+||+|.+..
T Consensus        84 ~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~-------------~~~~~~W~~L~~~~  135 (141)
T 1v27_A           84 RREFRERMLEITLWDQARVREEESEFLGEILIELETAL-------------LDDEPHWYKLQTHD  135 (141)
T ss_dssp             TTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCC-------------CSSEEEEEECBCCS
T ss_pred             HHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccC-------------CCCCCceEECcccc
Confidence            556667899999999999876  899999999987632             11267888888654

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.91  E-value=6.7e-24  Score=152.95  Aligned_cols=116  Identities=28%  Similarity=0.488  Sum_probs=100.7

Q ss_pred             ccceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEE-
Q psy12137         79 EECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-  156 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~-  156 (224)
                      ......|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+.... ..++|++++++.||.|||+|.|. 
T Consensus        10 ~~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~   89 (142)
T 2chd_A           10 DQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHG   89 (142)
T ss_dssp             ----CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEES
T ss_pred             CCCCccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcc
Confidence            4457899999999999999999999999999999988899999999999764433 78999999999999999999999 


Q ss_pred             eecCcccccEEEEEEEECCCCCCCceeEEEEEecCCCC
Q psy12137        157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG  194 (224)
Q Consensus       157 ~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~  194 (224)
                      +...++....|.|+|||++.++++++||++.|++....
T Consensus        90 ~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~  127 (142)
T 2chd_A           90 ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK  127 (142)
T ss_dssp             CCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCC
T ss_pred             cCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcC
Confidence            75555555799999999999988999999999998754

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.91  E-value=2e-24  Score=155.65  Aligned_cols=128  Identities=33%  Similarity=0.493  Sum_probs=108.1

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC----------CeEeeeeeeCCCCCeec
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK----------RKYKTGVKWKTLNPIFN  150 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~----------~~~~T~~~~~~~~p~~~  150 (224)
                      +...|+|.+++.|.  .+.|.|.|++|++|+..+..|.+||||++++.+..+.          .+++|++++++.||.||
T Consensus         3 ~~~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wn   80 (142)
T 1rh8_A            3 HPITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN   80 (142)
T ss_dssp             CCCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEE
T ss_pred             CCcceEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCC
Confidence            36799999999998  7899999999999999998899999999998654321          35789999999999999


Q ss_pred             eEEEEE-eecCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        151 EEFAIE-TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       151 e~f~f~-~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                      |+|.|. +...++....|.|+|||++.++++++||++.|++.....            +....+||+|.+...
T Consensus        81 e~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~------------~~~~~~W~~L~~~~~  141 (142)
T 1rh8_A           81 QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH------------LDNTPRWYPLKEQTE  141 (142)
T ss_dssp             EEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG------------GTTCCEEEECBCCCC
T ss_pred             CEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEecccccc------------CCCCCeEEECCccCC
Confidence            999997 765556667999999999999899999999999987431            234668999987653

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.90  E-value=2.5e-22  Score=145.82  Aligned_cols=124  Identities=33%  Similarity=0.560  Sum_probs=104.3

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEEeec
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKI  159 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~~~~  159 (224)
                      ....|+|.+++.|.  .+.|.|.|++|++|+..+..+.+||||++++.+... ...++|++++++.||.|||+|.|.+..
T Consensus        16 ~~~~G~l~~~l~~~--~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   93 (149)
T 1a25_A           16 MERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE   93 (149)
T ss_dssp             -CTTCEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCS
T ss_pred             CCcceEEEEEEEec--CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEecc
Confidence            35689999999994  689999999999999998889999999999976543 378999999999999999999999865


Q ss_pred             CcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       160 ~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      .++ ...|.|+|||++.++++++||++.|++....          .   ....+||+|.+.
T Consensus        94 ~~~-~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~----------~---~~~~~W~~L~~~  140 (149)
T 1a25_A           94 SDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQ----------K---AGVDGWFKLLSQ  140 (149)
T ss_dssp             GGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHT----------T---CCEEEEEECBCH
T ss_pred             ccC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhC----------c---CccCCeEEccCC
Confidence            444 3689999999999989999999999987532          1   136788888764

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.89  E-value=1.8e-22  Score=149.88  Aligned_cols=108  Identities=22%  Similarity=0.358  Sum_probs=92.6

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCC-CCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK  158 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~-~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~  158 (224)
                      ....|+|.+++.|  ..+.|.|.|++|++|+.++. .|.+||||++++.+.... .+++|++++++.||+|||+|.|.+.
T Consensus        15 ~~~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~   92 (171)
T 2q3x_A           15 TPAMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDES   92 (171)
T ss_dssp             --CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSC
T ss_pred             CCCccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEec
Confidence            3567999999999  58999999999999999885 689999999998764322 5889999999999999999999984


Q ss_pred             cCcccccEEEEEEE-ECCCCCCCceeEEEEEecCCC
Q psy12137        159 ITELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSK  193 (224)
Q Consensus       159 ~~~~~~~~l~i~v~-~~~~~~~~~~lG~~~l~l~~~  193 (224)
                      .   ....|.|+|| |++.++++++||++.|++...
T Consensus        93 ~---~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l  125 (171)
T 2q3x_A           93 P---QGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL  125 (171)
T ss_dssp             C---TTEEEEEEEEEECSTTCSSEEEEEEEECGGGS
T ss_pred             C---CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHc
Confidence            3   3578999999 999999999999999999874

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.88  E-value=3.1e-21  Score=154.33  Aligned_cols=123  Identities=35%  Similarity=0.623  Sum_probs=106.7

Q ss_pred             eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137         82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE  161 (224)
Q Consensus        82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~  161 (224)
                      ...|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+...+
T Consensus         3 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-~~~~~T~~~~~~~nP~wne~f~f~v~~~~   81 (284)
T 2r83_A            3 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYSE   81 (284)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCT-TSCEECCCCCSCSSCEEEEEEEECCCGGG
T ss_pred             cceeEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCC-CceEeCCcccCCCCCeeCceEEEEechHH
Confidence            56899999999999999999999999999999888999999999987543 46789999999999999999999987766


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEecCCC--CCccchhhhhhc
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVDMMK  205 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~--~~~~~~w~~l~~  205 (224)
                      +....|.|+|||++.++++++||++.+++...  +....+|++|..
T Consensus        82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~  127 (284)
T 2r83_A           82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  127 (284)
T ss_dssp             CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeec
Confidence            76789999999999998999999999999874  334455555543

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.85  E-value=9.4e-21  Score=152.49  Aligned_cols=123  Identities=36%  Similarity=0.607  Sum_probs=106.1

Q ss_pred             eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137         82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE  161 (224)
Q Consensus        82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~  161 (224)
                      ...|+|.+++.|....+.|.|.|++|++|+..+..|.+||||++++.++ ++..++|++++++.||.|||+|.|.+...+
T Consensus         4 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~-~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   82 (296)
T 1dqv_A            4 APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKTLNPIFNETFQFSVPLAE   82 (296)
T ss_dssp             CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTS-TTSCEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred             CeeeEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcC-CCeeEeCCccCCCCCCcEeeEEEEEecHHH
Confidence            5789999999999999999999999999999988899999999998643 357889999999999999999999997777


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEe-cC---CCCCccchhhhhhc
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELC-CN---SKGDRLRHWVDMMK  205 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~-l~---~~~~~~~~w~~l~~  205 (224)
                      +....|.|+|||++.++++++||++.++ +.   ..+....+|+.|..
T Consensus        83 l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~  130 (296)
T 1dqv_A           83 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  130 (296)
T ss_dssp             GSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             hcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccc
Confidence            7777999999999999999999999996 32   23344566776653

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.84  E-value=2.1e-20  Score=136.11  Aligned_cols=107  Identities=21%  Similarity=0.289  Sum_probs=88.7

Q ss_pred             CCCEEEEEEEEeecCCCCCC----------CCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccc
Q psy12137         96 KKRALIVNLIKCTNLIPMDS----------NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSK  164 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~----------~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~  164 (224)
                      ..+.|.|.|++|++|+.++.          .|.+||||++.+    +. +..+|++++++.||.|||+|.|.+..    .
T Consensus        27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l----~~~~~~kT~v~~ktlnP~WNE~F~f~v~~----~   98 (157)
T 2fk9_A           27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV----DQVRVGQTSTKQKTNKPTYNEEFCANVTD----G   98 (157)
T ss_dssp             EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEE----TTEEEEECCCCSSCSSCEEEEEEEEEEEE----E
T ss_pred             CccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEE----CCEeeEEeeecCCCCCCccCcEEEEEcCC----C
Confidence            36789999999999998762          367999999998    44 45799999999999999999999853    3


Q ss_pred             cEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcC--CCceeEeeeecCCC
Q psy12137        165 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKY--PDHKHEGIHNLSIK  220 (224)
Q Consensus       165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~--~~~~~~~wh~l~~~  220 (224)
                      ..|.|+|||++.++++++||++.|++..          +...  ++..+.+|++|.|.
T Consensus        99 ~~L~~~V~D~d~~~~dd~iG~~~i~l~~----------l~~~~~~~~~~~~W~~L~~~  146 (157)
T 2fk9_A           99 GHLELAVFHETPLGYDHFVANCTLQFQE----------LLRTTGASDTFEGWVDLEPE  146 (157)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHH----------HHHHHTTCSEEEEEEECBSS
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEEHHH----------hhcccCCCCcccEEEECCCC
Confidence            5899999999999999999999999864          3333  45678888888763

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=4.4e-21  Score=136.60  Aligned_cols=108  Identities=29%  Similarity=0.370  Sum_probs=93.2

Q ss_pred             EEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEE
Q psy12137         91 LCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT  170 (224)
Q Consensus        91 ~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~  170 (224)
                      +.|....+.|.|.|++|++|+..+..|.+||||++++    +..+++|++++++.||.|||+|.|.+..  . ...|.|+
T Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~----~~~~~kT~~~~~t~nP~wne~f~f~~~~--~-~~~l~i~   78 (133)
T 2ep6_A            6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLEL----GNDRLQTHTVYKNLNPEWNKVFTFPIKD--I-HDVLEVT   78 (133)
T ss_dssp             CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEE----TTEEEECCCCSSCSSCCCCEEEEEEESC--T-TCEEEEE
T ss_pred             ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEE----CCEEEEeeeecCCCCCccccEEEEEecC--C-CCEEEEE
Confidence            3466678899999999999999988899999999998    4568899999999999999999999853  2 4689999


Q ss_pred             EEECCCCCCCceeEEEEEecCCCCCccchhhhhhc
Q psy12137        171 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK  205 (224)
Q Consensus       171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~  205 (224)
                      |||++.++++++||++.+++.....+..+|+.|..
T Consensus        79 V~d~d~~~~~~~lG~~~i~l~~l~~~~~~w~~L~~  113 (133)
T 2ep6_A           79 VFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKN  113 (133)
T ss_dssp             EEEEETTEEEEECCBCEEEGGGCCSSCCEECCCBC
T ss_pred             EEECCCCCCCCeeEEEEEEHHHccCCCceEEEeec
Confidence            99999988899999999999986655567777654

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.7e-19  Score=129.39  Aligned_cols=109  Identities=19%  Similarity=0.199  Sum_probs=91.7

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcc-cccEEEEEEEEC
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITEL-SKQTLVITVWDK  174 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~-~~~~l~i~v~~~  174 (224)
                      ..+.|.|.|++|++|+..+. |.+||||++++    ...+++|++++++.||.|||+|.|.+..... ....|.|+|||+
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~----~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~   79 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIF----KDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF   79 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEEC----SSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEE----CCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence            36789999999999999888 89999999998    4578999999999999999999999854333 357899999999


Q ss_pred             CCCCCCceeEEEEEecCCC--CCccchhhh---hhcCCCc
Q psy12137        175 DYGKSNDYLGCLELCCNSK--GDRLRHWVD---MMKYPDH  209 (224)
Q Consensus       175 ~~~~~~~~lG~~~l~l~~~--~~~~~~w~~---l~~~~~~  209 (224)
                      +.++++++||++.|++...  +....+|++   |.+..+.
T Consensus        80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~  119 (140)
T 2dmh_A           80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ  119 (140)
T ss_dssp             TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC
Confidence            9998999999999999864  345577877   6554443

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.82  E-value=6.2e-20  Score=131.15  Aligned_cols=106  Identities=18%  Similarity=0.282  Sum_probs=86.5

Q ss_pred             CCEEEEEEEEeecCCCCCCCC-----------CCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccc
Q psy12137         97 KRALIVNLIKCTNLIPMDSNG-----------FSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSK  164 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g-----------~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~  164 (224)
                      .+.|.|.|++|++|+..+..+           .+||||++++    +. ...+|++++++.||.|||+|.|.+...    
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l----~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~----   76 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTNSPAWHDEFVTDVCNG----   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE----TTEEEEECCCCSSCSSCEEEEEEEEEEEEE----
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEE----CCeEeeeeeEECCCcCCccCCEEEEEecCC----
Confidence            467899999999999876433           3899999998    33 457899999999999999999998532    


Q ss_pred             cEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        165 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      ..|.|+|||++.++++++||++.|++..          +...+...+..|+.|.|.
T Consensus        77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~----------l~~~~~~~~~~w~~L~~~  122 (136)
T 1gmi_A           77 RKIELAVFHDAPIGYDDFVANCTIQFEE----------LLQNGSRHFEDWIDLEPE  122 (136)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHH----------HTSTTCSEEEEEEECBSS
T ss_pred             CEEEEEEEeCCCCCCCCEEEEEEEEHHH----------hcccCCCCccEEEEcCCC
Confidence            6899999999999999999999999865          333344566788888764

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.82  E-value=1.9e-19  Score=130.38  Aligned_cols=101  Identities=23%  Similarity=0.456  Sum_probs=86.9

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      .+.|.|.|++|++|+..+..|.+||||++++    +...++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~----~~~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~l~~~v~d~d~   88 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQV----GKTKKRTKTIYGNLNPVWEENFHFECHNS---SDRIKVRVLDEDD   88 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE----TTEEEECCCCCSCSSCEEEEEEEEEECST---TCEEEEEEEECCC
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE----CCEEEECCccCCCCCCCcccEEEEEecCC---CCEEEEEEEECCC
Confidence            6889999999999999998899999999998    56888999999999999999999998533   3689999999998


Q ss_pred             C-----------CCCceeEEEEEecCCCCCccchhhhhh
Q psy12137        177 G-----------KSNDYLGCLELCCNSKGDRLRHWVDMM  204 (224)
Q Consensus       177 ~-----------~~~~~lG~~~l~l~~~~~~~~~w~~l~  204 (224)
                      .           +++++||++.+++........+|+.|.
T Consensus        89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~w~~L~  127 (148)
T 3kwu_A           89 DIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLD  127 (148)
T ss_dssp             SHHHHHHTTTSSCSSEEEEEEEEEGGGCCSEEEEEEECB
T ss_pred             CccccccccccCCCCccEEEEEEEHHHCcCCCCEEEEcc
Confidence            5           789999999999988654444555544

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.81  E-value=7.4e-19  Score=127.98  Aligned_cols=96  Identities=25%  Similarity=0.374  Sum_probs=77.3

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC--CCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEE
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD  173 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~--~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~  173 (224)
                      ..+.|.|.|++|++|+..+..|.+||||++++.+...  ...++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~l~~~V~d   94 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ---QHRLLFEVFD   94 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT---TCEEEEEEEE
T ss_pred             CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC---CCEEEEEEEE
Confidence            4678899999999999988888999999999975432  2678999999999999999999998542   4689999999


Q ss_pred             CCCCCCCceeEEEEEecCCCC
Q psy12137        174 KDYGKSNDYLGCLELCCNSKG  194 (224)
Q Consensus       174 ~~~~~~~~~lG~~~l~l~~~~  194 (224)
                      ++.++++++||++.|++....
T Consensus        95 ~d~~~~d~~iG~~~i~l~~l~  115 (153)
T 3b7y_A           95 ENRLTRDDFLGQVDVPLYPLP  115 (153)
T ss_dssp             CCSSSCCEEEEEEEEECCSCC
T ss_pred             CCCCcCCCeeEEEEEEHHHcc
Confidence            999989999999999998643

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.80  E-value=3.5e-19  Score=125.46  Aligned_cols=93  Identities=22%  Similarity=0.377  Sum_probs=78.7

Q ss_pred             CCEEEEEEEEeecCCCC---CCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEE
Q psy12137         97 KRALIVNLIKCTNLIPM---DSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD  173 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~---~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~  173 (224)
                      .+.|.|.|++|++|+.+   +..|.+||||++++.+.. ..+++|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d   78 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP-DSRKRTRHFNNDINPVWNETFEFILDPN--QENVLEITLMD   78 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST-TCCEECCCCTTCSSCEEEEEEEEEECTT--SCCEEEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCC-CceEEccccCCCCCCcccceEEEEecCC--CCCEEEEEEEE
Confidence            46899999999999984   446889999999985322 4788999999999999999999998433  35689999999


Q ss_pred             CCCCCCCceeEEEEEecCCC
Q psy12137        174 KDYGKSNDYLGCLELCCNSK  193 (224)
Q Consensus       174 ~~~~~~~~~lG~~~l~l~~~  193 (224)
                      ++.++ +++||++.+++...
T Consensus        79 ~d~~~-~~~iG~~~i~l~~l   97 (126)
T 1rlw_A           79 ANYVM-DETLGTATFTVSSM   97 (126)
T ss_dssp             CCSSC-CEEEEEEEEEGGGS
T ss_pred             CCCCC-CceeEEEEEEHHHc
Confidence            99874 88999999999864

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.80  E-value=1.6e-18  Score=129.19  Aligned_cols=96  Identities=24%  Similarity=0.367  Sum_probs=77.6

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEE
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD  173 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~  173 (224)
                      ..+.|.|.|++|++|+..+..|.+||||++++.....+  .+++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~---~~~L~~~V~d   82 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ---RHRILFEVFD   82 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT---TCEEEEEEEE
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC---CCEEEEEEEE
Confidence            46789999999999999988899999999998754322  578999999999999999999998633   4689999999


Q ss_pred             CCCCCCCceeEEEEEecCCCC
Q psy12137        174 KDYGKSNDYLGCLELCCNSKG  194 (224)
Q Consensus       174 ~~~~~~~~~lG~~~l~l~~~~  194 (224)
                      ++.++++++||++.|+|....
T Consensus        83 ~d~~~~d~~lG~~~i~l~~l~  103 (176)
T 3m7f_B           83 ENRLTRDDFLGQVDVPLYPLP  103 (176)
T ss_dssp             CC----CEEEEEEEEESCSCC
T ss_pred             CCCCCCCcEEEEEEEEHHHcc
Confidence            999989999999999998743

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.78  E-value=1.4e-18  Score=123.96  Aligned_cols=102  Identities=22%  Similarity=0.279  Sum_probs=86.0

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeee-CCCCCeeceEEEEEeecCcccccEEEEEEEEC
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDK  174 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~-~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~  174 (224)
                      ..+.|.|.|++|++|+..+..|.+||||++++    ....++|++++ ++.||.|||+|.|.+..   ....|.|+|||+
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~----~~~~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V~d~   80 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC----RTQDQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKIFDK   80 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEES----SSCEEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEECCS
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEE----CCccceeEeccCCCCCCccCcEEEEEECC---CCCEEEEEEEEC
Confidence            35678999999999999988899999999998    45678999998 89999999999999863   357899999999


Q ss_pred             CCCCCCceeEEEEEecCCC---CCccchhhhhh
Q psy12137        175 DYGKSNDYLGCLELCCNSK---GDRLRHWVDMM  204 (224)
Q Consensus       175 ~~~~~~~~lG~~~l~l~~~---~~~~~~w~~l~  204 (224)
                      +.++++++||++.|++...   +....+|++|.
T Consensus        81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  113 (136)
T 1wfj_A           81 DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV  113 (136)
T ss_dssp             SSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCCCcEEEEee
Confidence            9998999999999999863   22344566654

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.76  E-value=9.7e-18  Score=119.03  Aligned_cols=89  Identities=24%  Similarity=0.436  Sum_probs=77.8

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  177 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~  177 (224)
                      ..|.|+|++|++|+..+..|.+||||++++.+.  ...++|++++++.||.|||+|.|.+...    ..|.|+|||++.+
T Consensus         5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~l~~~v~d~d~~   78 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS--GQCHSTDTVKNTLDPKWNQHYDLYVGKT----DSITISVWNHKKI   78 (132)
T ss_dssp             EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT--CCEEECCCCSSCSSCEEEEEEEEEEETT----CCEEEEEEEGGGT
T ss_pred             EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC--CceEECCccCCCCCCCccCEEEEEeCCC----CEEEEEEEECCCC
Confidence            468999999999999998899999999998432  3789999999999999999999998543    3599999999988


Q ss_pred             CC---CceeEEEEEecCC
Q psy12137        178 KS---NDYLGCLELCCNS  192 (224)
Q Consensus       178 ~~---~~~lG~~~l~l~~  192 (224)
                      ++   +++||++.|++..
T Consensus        79 ~~~~~d~~lG~~~i~l~~   96 (132)
T 3pyc_A           79 HKKQGAGFLGCVRLLSNA   96 (132)
T ss_dssp             TSSTTTTEEEEEEECHHH
T ss_pred             CCCCCCCceEEEEEeHHH
Confidence            76   7899999999775

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.75  E-value=1.6e-17  Score=123.25  Aligned_cols=89  Identities=18%  Similarity=0.173  Sum_probs=77.0

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      ..+.|.|.|++|++|+..+..+.+||||++++    +...++|++++++.||.|||+|.|.+..    ...|.|+|||++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~----~~~~~kT~v~~~tlnP~Wne~f~f~v~~----~~~L~~~V~D~d  105 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTV----DGQSKKTEKCNNTNSPKWKQPLTVIVTP----VSKLHFRVWSHQ  105 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEE----TTEEEECCCCSSCSSCEEEEEEEEEECT----TCEEEEEEEECC
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEE----CCEEeEccccCCCCCCeECCEEEEEeCC----CCEEEEEEEECC
Confidence            46789999999999994444455999999998    4488999999999999999999999842    578999999999


Q ss_pred             CCCCCceeEEEEEecCC
Q psy12137        176 YGKSNDYLGCLELCCNS  192 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~  192 (224)
                      .++++++||++.|++..
T Consensus       106 ~~~~dd~lG~~~i~l~~  122 (173)
T 2nq3_A          106 TLKSDVLLGTAALDIYE  122 (173)
T ss_dssp             SSSCCEEEEEEEEEHHH
T ss_pred             CCCCCceEEEEEEEHHH
Confidence            99899999999999875

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.69  E-value=2.6e-16  Score=111.45  Aligned_cols=85  Identities=15%  Similarity=0.196  Sum_probs=68.4

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      .+.|.|.|++|++++   ..|.+||||+++.     ...+++.+..++.||.|||+|.|.+..   ....|.|+|||++ 
T Consensus         4 ~~~L~V~V~~A~~l~---~~g~~DPYv~v~~-----~~~kt~~~~~~t~nP~WnE~f~f~v~~---~~~~L~~~V~D~d-   71 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDG---AQEKFNTYVTLKV-----QNVKSTTIAVRGSQPSWEQDFMFEINR---LDLGLTVEVWNKG-   71 (131)
T ss_dssp             CEEEEEEEEEEECSS---CGGGCEEEEEEEE-----TTEEEECCCEESSSCEEEEEEEEEECC---CSSEEEEEEEECC-
T ss_pred             ceEEEEEEEEeECCC---CCCCcCeEEEEEe-----cCEEEeEecCCCCCceECCEEEEEEeC---CCCeEEEEEEECC-
Confidence            568999999999885   2678999999982     223333344578999999999999853   2457999999999 


Q ss_pred             CCCCceeEEEEEecCCC
Q psy12137        177 GKSNDYLGCLELCCNSK  193 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~~  193 (224)
                      +++|++||++.|++...
T Consensus        72 ~~~dd~iG~~~i~l~~l   88 (131)
T 2cjt_A           72 LIWDTMVGTVWIPLRTI   88 (131)
T ss_dssp             SSCEEEEEEEEEEGGGS
T ss_pred             CCCCCeEEEEEEEHHHh
Confidence            88899999999999864

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.65  E-value=7.5e-16  Score=136.70  Aligned_cols=131  Identities=31%  Similarity=0.582  Sum_probs=110.0

Q ss_pred             cccccCcccceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeec
Q psy12137         72 EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFN  150 (224)
Q Consensus        72 ~~~~~~~~~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~  150 (224)
                      ....|+.......|.|.+++.+.  .+.|.|.+++|++|+.++..|.+||||++++.+.... .+++|++++++.||.||
T Consensus       148 v~~~C~~d~~~~~g~i~~~~~~~--~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wn  225 (674)
T 3pfq_A          148 VPSLCGTDHTERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWN  225 (674)
T ss_dssp             SCCCSSSCSSCCSCEEEEEEEEC--SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEE
T ss_pred             cCcccccccccccccccccceec--cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCcc
Confidence            44567777778899998888775  7899999999999999999999999999999776544 78899999999999999


Q ss_pred             eEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCCC-Cccchhhhhhc
Q psy12137        151 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMK  205 (224)
Q Consensus       151 e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~-~~~~~w~~l~~  205 (224)
                      |+|.|.+...+. ...|.|+|||++.++++++||.+.++++... .+..+|+.+++
T Consensus       226 e~f~f~~~~~~~-~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls  280 (674)
T 3pfq_A          226 ETFRFQLKESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLS  280 (674)
T ss_dssp             EEEEEECCSTTT-TCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCCEEEEEECBC
T ss_pred             ceeeeecccCCc-cceeeeEEeecccccccccccccccchhhhccCCcccceeecc
Confidence            999999865443 3579999999999999999999999998632 34567777765

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.64  E-value=8.8e-16  Score=132.15  Aligned_cols=91  Identities=29%  Similarity=0.446  Sum_probs=82.1

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      ..+.|.|.|++|++|+..+..|.+||||++++    +...++|++++++.||.|||+|.|.+.  ......|.|+|||++
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~----~~~~~~T~~~~~t~nP~w~e~f~f~~~--~~~~~~l~~~v~d~d  458 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISM----GSQSYTTRTIQDTLNPKWNFNCQFFIK--DLYQDVLCLTLFDRD  458 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE----TTEEEECCCCSSCSSCEEEEEEEEEES--CTTTCEEEEEEEECC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEE----CCeeccCCccCCCCCCccCceEEEEec--CCCCCEEEEEEEeCC
Confidence            35789999999999999998999999999998    567899999999999999999999984  445578999999999


Q ss_pred             CCCCCceeEEEEEecCC
Q psy12137        176 YGKSNDYLGCLELCCNS  192 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~  192 (224)
                      .++++++||++.+++..
T Consensus       459 ~~~~~d~lG~~~~~l~~  475 (510)
T 3jzy_A          459 QFSPDDFLGRTEIPVAK  475 (510)
T ss_dssp             SSSSCCEEEEEEEEHHH
T ss_pred             CCCCCCceEEEEEEHHH
Confidence            99999999999999885

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.62  E-value=4.9e-15  Score=104.08  Aligned_cols=87  Identities=21%  Similarity=0.227  Sum_probs=78.6

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeee-CCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~-~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      ..-|+|.|.+|.+|+     |.+|||+++.+    .+.+++|++++ ++.+|+|||.|.|++......+..|.|.|+|++
T Consensus        20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~F----Rg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~   90 (144)
T 3l9b_A           20 HMALIVHLKTVSELR-----GRADRIAKVTF----RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS   90 (144)
T ss_dssp             CEEEEEEEEEEESCC-----SCEEEEEEEEE----TTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC
T ss_pred             cEEEEEEEEEecCCC-----CCCCCeEEEEE----eccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc
Confidence            345789999999998     47899999998    57999999998 699999999999999887777889999999999


Q ss_pred             CCCCCceeEEEEEecCC
Q psy12137        176 YGKSNDYLGCLELCCNS  192 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~  192 (224)
                      .+.++++||++.++|..
T Consensus        91 ~v~~nrlIG~~~i~Lq~  107 (144)
T 3l9b_A           91 KVFSNKLIGTFRMVLQK  107 (144)
T ss_dssp             TTSCCEEEEEEEEESHH
T ss_pred             cccCCCEEEEEEEEhHH
Confidence            99999999999999985

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.62  E-value=5.3e-15  Score=108.84  Aligned_cols=84  Identities=15%  Similarity=0.214  Sum_probs=68.6

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeee-eCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVK-WKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~-~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      .+.|.|+|++|++++   ..|.+||||+++.      +..+|+++ .++.||.|||+|.|.+..  . ...|.|+|||++
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~~------~~~kt~~~~~~t~nP~WnE~f~f~v~~--~-~~~L~~~V~D~d   80 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLKV------QNVESTTIAVRGSQPSWEQDFMFEINR--L-DLGLTVEVWNKG   80 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEEE------TTEEEECCCEESSSCEEEEEEEEECCC--T-TSEEEEEEEECC
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEEe------cceEEEEecCCCCCCCCCCEEEEEeeC--C-CCEEEEEEEECC
Confidence            568999999999884   3678999999982      23345544 468999999999999853  2 457999999999


Q ss_pred             CCCCCceeEEEEEecCCC
Q psy12137        176 YGKSNDYLGCLELCCNSK  193 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~~  193 (224)
                       +++|++||++.|+|...
T Consensus        81 -~~~dd~iG~~~i~L~~l   97 (167)
T 2cjs_A           81 -LIWDTMVGTVWIPLRTI   97 (167)
T ss_dssp             -SSCCEEEEEEEEEGGGS
T ss_pred             -CCCCceEEEEEEEHHHh
Confidence             88899999999999864

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.61  E-value=4.4e-15  Score=129.99  Aligned_cols=112  Identities=23%  Similarity=0.318  Sum_probs=91.8

Q ss_pred             CCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEecCCC-CCeEeeeeeeCC-CCCeeceEEEEEeecCcccccEEEEEEE
Q psy12137         97 KRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLH-KRKYKTGVKWKT-LNPIFNEEFAIETKITELSKQTLVITVW  172 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~--~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~-~~p~~~e~f~f~~~~~~~~~~~l~i~v~  172 (224)
                      .+.|.|.|++|++|+..+.  .+.+||||++.+.+... ..+++|++++++ .||+|||+|.|.+...++  ..|.|+||
T Consensus       496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el--~~L~~~V~  573 (624)
T 1djx_A          496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVE  573 (624)
T ss_dssp             CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGG--CEEEEEEE
T ss_pred             ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCC--CEEEEEEE
Confidence            4579999999999998873  68899999999964321 267899999987 999999999999864433  58999999


Q ss_pred             ECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCcee
Q psy12137        173 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH  211 (224)
Q Consensus       173 ~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~  211 (224)
                      |++.++++++||++.|++.....+++ |..|.+..++.+
T Consensus       574 D~D~~~~dd~iG~~~ipl~~L~~G~r-~v~L~d~~g~~~  611 (624)
T 1djx_A          574 DYDSSSKNDFIGQSTIPWNSLKQGYR-HVHLLSKNGDQH  611 (624)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGBCCEEE-EEEEECTTSCEE
T ss_pred             EcCCCCCCceeEEEEEEHHHcCCCcE-EEeCCCCCcCCC
Confidence            99999899999999999998766653 667766666554

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.60  E-value=4.5e-15  Score=127.47  Aligned_cols=90  Identities=27%  Similarity=0.553  Sum_probs=78.9

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      .+.|.|.|++|++|+. |..|.+||||++++    +.+..+|+++++++||+|||+|.|.+... .....|.|+|||+|.
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l----~~~~~kTkvik~tlNP~Wne~f~f~~~~~-~~~~~L~~~V~D~D~  466 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFF----GGQEFRTGVVWNNNNPRWTDKMDFENVLL-STGGPLRVQVWDADY  466 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEE----TTEEEECCCBCSCSSCBCCCCEEEEEEET-TTCCCEEEEEEECCS
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEE----CCEeeeeeeecCCCCCCCCeEEEEEEecC-CCCCEEEEEEEECCC
Confidence            4689999999999998 88899999999998    45679999999999999999999985321 134689999999999


Q ss_pred             CCCCceeEEEEEecCC
Q psy12137        177 GKSNDYLGCLELCCNS  192 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~  192 (224)
                      +++|++||++.++|..
T Consensus       467 ~~~dD~LG~~~~~L~~  482 (540)
T 3nsj_A          467 GWDDDLLGSCDRSPHS  482 (540)
T ss_dssp             SSCCEEEEEEEECCCS
T ss_pred             CCCCCEEEEEEEEeeC
Confidence            9899999999999874

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.60  E-value=1.8e-15  Score=133.79  Aligned_cols=105  Identities=20%  Similarity=0.314  Sum_probs=87.1

Q ss_pred             CCCEEEEEEEEeecCCC---CCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEE
Q psy12137         96 KKRALIVNLIKCTNLIP---MDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW  172 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~---~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~  172 (224)
                      ..+.|.|.|++|++|+.   ++..|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+..  .....|.|+||
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~-~~k~kTkvik~tlNPvWNEtF~F~v~~--~~~~~L~~~V~   92 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP-DSRKRTRHFNNDINPVWNETFEFILDP--NQENVLEITLM   92 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTST-TCCEECCCCTTCSSCEEEEEEEEEECT--TSCCBCEEEEE
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCC-CCeEecceEcCCCCCeeeeEEEEEecC--CCCCEEEEEEE
Confidence            46789999999999998   6777899999999985422 378899999999999999999999853  23468999999


Q ss_pred             ECCCCCCCceeEEEEEecCCC--CCccchhhhhh
Q psy12137        173 DKDYGKSNDYLGCLELCCNSK--GDRLRHWVDMM  204 (224)
Q Consensus       173 ~~~~~~~~~~lG~~~l~l~~~--~~~~~~w~~l~  204 (224)
                      |++.++ +++||++.|++...  +....+|++|.
T Consensus        93 D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~  125 (749)
T 1cjy_A           93 DANYVM-DETLGTATFTVSSMKVGEKKEVPFIFN  125 (749)
T ss_dssp             ECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred             ECCCCC-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence            999998 99999999999864  33445666664

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=3.3e-13  Score=96.37  Aligned_cols=86  Identities=27%  Similarity=0.344  Sum_probs=65.5

Q ss_pred             CCCCCeeccEEEECccCcccc-ccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGE   78 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~-~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~   78 (224)
                      +|+||+|||+|.| .+...++ ....|.|+|||+|.+++ ++||++.|+|.++........|+.+.+   +..      .
T Consensus        47 ~t~nP~wne~f~f-~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~---l~~------~  116 (140)
T 2dmh_A           47 NELNPVWNEILEF-DLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS---LLN------E  116 (140)
T ss_dssp             SCSSCEEEEEEEE-ECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEE---EEC------T
T ss_pred             CCCCCccCcEEEE-EecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeee---ccC------C
Confidence            5789999999999 5654433 46899999999999988 999999999999987776666766221   110      0


Q ss_pred             ccceeceEEEEEEEEeCC
Q psy12137         79 EECWQHGKIFLTLCFSTK   96 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~~~~   96 (224)
                      ......|+|++++.|.+.
T Consensus       117 ~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A          117 KGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             TCCEEEEEEEEEEEECCC
T ss_pred             CCCCCCCEEEEEEEEECC
Confidence            112467999999999874

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.46  E-value=1.4e-13  Score=97.99  Aligned_cols=73  Identities=21%  Similarity=0.392  Sum_probs=58.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcc--cceeecccccccCCCcccccC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS--RDLCLNLCKHYPVPREEEVWG   77 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~--~~~~~~l~~~~~l~~~~~~~~   77 (224)
                      ||+||+|||+|.| .+..    ...|.|.|||+|.+++ ++||++.|+|+++.....  .+.|+++              
T Consensus        59 ~t~nP~WnE~f~f-~v~~----~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L--------------  119 (136)
T 1gmi_A           59 KTNSPAWHDEFVT-DVCN----GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL--------------  119 (136)
T ss_dssp             SCSSCEEEEEEEE-EEEE----ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC--------------
T ss_pred             CCcCCccCCEEEE-EecC----CCEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc--------------
Confidence            5899999999999 4532    2789999999999998 999999999999976432  2444443              


Q ss_pred             cccceeceEEEEEEEEeCC
Q psy12137         78 EEECWQHGKIFLTLCFSTK   96 (224)
Q Consensus        78 ~~~~~~~g~l~i~~~~~~~   96 (224)
                          ...|+|++++.|...
T Consensus       120 ----~~~G~i~l~l~~~~~  134 (136)
T 1gmi_A          120 ----EPEGKVYVIIDLSGS  134 (136)
T ss_dssp             ----BSSCEEEEEEEEEEE
T ss_pred             ----CCCeEEEEEEEEEec
Confidence                247999999998753

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.45  E-value=4.1e-13  Score=97.35  Aligned_cols=85  Identities=22%  Similarity=0.414  Sum_probs=61.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc-cccccCCCcccccCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL-CKHYPVPREEEVWGE   78 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l-~~~~~l~~~~~~~~~   78 (224)
                      +|+||+|||+|.| .+...   ...|.|+|||++.+++ ++||++.|+|.++....... ...+ ..|++|....     
T Consensus        67 ~t~nP~wne~f~f-~v~~~---~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~-~~~~~~~w~~L~~~~-----  136 (153)
T 3b7y_A           67 KSLNPKWNEEILF-RVHPQ---QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRL-ERPYTFKDFVLHPRS-----  136 (153)
T ss_dssp             SCSSCCCCEEEEE-EECTT---TCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTS-CCCCCCEEEECBCSS-----
T ss_pred             CCCCCCCCCEEEE-EecCC---CCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcc-ccccccccccccccc-----
Confidence            5899999999999 56544   5789999999999988 99999999999997655321 0111 1344443221     


Q ss_pred             ccceeceEEEEEEEEeC
Q psy12137         79 EECWQHGKIFLTLCFST   95 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~~~   95 (224)
                      ......|+|.+++.|.+
T Consensus       137 ~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A          137 HKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             TTCCCCSEEEEEEEECC
T ss_pred             CCCCcceEEEEEEEEeC
Confidence            12356899999999864

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.44  E-value=2.3e-13  Score=97.05  Aligned_cols=64  Identities=19%  Similarity=0.324  Sum_probs=55.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.| .++..++....|.|.|||+|.+++ ++||++.++|+++........|.+|.+
T Consensus        68 ~tlnP~wnE~f~f-~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A           68 RQLHTTWEEGLVL-PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CCSSEECSSCEEE-ECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             CCCCCcCCceEEE-EecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            6899999999999 688888888899999999999998 999999999999976556666666643

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.43  E-value=1.4e-13  Score=99.92  Aligned_cols=71  Identities=18%  Similarity=0.385  Sum_probs=56.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC----cccceeecccccccCCCcccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH----ISRDLCLNLCKHYPVPREEEV   75 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~----~~~~~~~~l~~~~~l~~~~~~   75 (224)
                      ||+||+|||+|.| .+..    ...|.|.|||.|.+++ ++||++.|+|+++...    ...+.|++|            
T Consensus        81 ktlnP~WNE~F~f-~v~~----~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L------------  143 (157)
T 2fk9_A           81 KTNKPTYNEEFCA-NVTD----GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDL------------  143 (157)
T ss_dssp             SCSSCEEEEEEEE-EEEE----ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEEC------------
T ss_pred             CCCCCccCcEEEE-EcCC----CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEEC------------
Confidence            5899999999999 4542    4689999999999998 9999999999999643    345555555            


Q ss_pred             cCcccceeceEEEEEEEEe
Q psy12137         76 WGEEECWQHGKIFLTLCFS   94 (224)
Q Consensus        76 ~~~~~~~~~g~l~i~~~~~   94 (224)
                            ...|+|++.+.+.
T Consensus       144 ------~~~G~i~l~l~~~  156 (157)
T 2fk9_A          144 ------EPEGKVFVVITLT  156 (157)
T ss_dssp             ------BSSCEEEEEEEEC
T ss_pred             ------CCCcEEEEEEEEE
Confidence                  2378999988874

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.41  E-value=3.8e-13  Score=94.48  Aligned_cols=84  Identities=12%  Similarity=0.179  Sum_probs=69.5

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE   80 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~   80 (224)
                      ++||+|||.|+| .+.......+.|.|.|||++++++ .+||++.++|.++.......++..|.+.            ..
T Consensus        59 ~~npvfnE~F~w-pl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~------------n~  125 (144)
T 3l9b_A           59 EDVADFDETFRW-PVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD------------NN  125 (144)
T ss_dssp             CSCEEEEEEEEE-EESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECT------------TS
T ss_pred             CCCceEcceEEe-cCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEEEeecccCC------------CC
Confidence            789999999999 677777788999999999999999 9999999999999877776665555441            12


Q ss_pred             ceeceEEEEEEEEeCCCC
Q psy12137         81 CWQHGKIFLTLCFSTKKR   98 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~   98 (224)
                      ....++|.+.+.|.+..+
T Consensus       126 ~~~~a~I~l~l~Y~pp~g  143 (144)
T 3l9b_A          126 AIIKTSLSMEVRYQAADG  143 (144)
T ss_dssp             CEEEEEEEEEEEEEETTC
T ss_pred             CccccEEEEEEEecCCCC
Confidence            245589999999998654

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.40  E-value=1.1e-12  Score=91.98  Aligned_cols=75  Identities=17%  Similarity=0.296  Sum_probs=59.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE   80 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~   80 (224)
                      +|+||+|||+|.| .+...  ....|.|+|||+|..+.++||++.++|+++........|++|.+               
T Consensus        50 ~t~nP~wne~f~f-~v~~~--~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~---------------  111 (126)
T 1rlw_A           50 NDINPVWNETFEF-ILDPN--QENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ---------------  111 (126)
T ss_dssp             TCSSCEEEEEEEE-EECTT--SCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT---------------
T ss_pred             CCCCCcccceEEE-EecCC--CCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCC---------------
Confidence            5899999999999 56433  36789999999997745999999999999987766666776643               


Q ss_pred             ceeceEEEEEEEEe
Q psy12137         81 CWQHGKIFLTLCFS   94 (224)
Q Consensus        81 ~~~~g~l~i~~~~~   94 (224)
                       ...|+|+++++..
T Consensus       112 -~~~g~i~~~le~~  124 (126)
T 1rlw_A          112 -VTEMVLEMSLEVA  124 (126)
T ss_dssp             -TEEEEEEEEEECC
T ss_pred             -CceEEEEEEEEeC
Confidence             4667887777643

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.39  E-value=5.2e-13  Score=94.72  Aligned_cols=64  Identities=28%  Similarity=0.410  Sum_probs=55.6

Q ss_pred             CCCCCeeccEEEECc-cCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYS-VSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~-v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.| . ++..++....|.|+|||+|.+++ ++||++.++|+++........|++|.+
T Consensus        65 ~t~nP~wnE~f~f-~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  130 (134)
T 2b3r_A           65 KTRNPTFNEMLVY-SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA  130 (134)
T ss_dssp             SCSSCEEEEEEEE-ESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred             CCCCCCCccEEEE-CCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence            5899999999999 6 88888778999999999999998 999999999999987666666666643

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.37  E-value=1.1e-12  Score=93.15  Aligned_cols=78  Identities=28%  Similarity=0.413  Sum_probs=61.3

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC-CcccceeecccccccCCCcccccCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP-HISRDLCLNLCKHYPVPREEEVWGE   78 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~   78 (224)
                      +|+||+|||+|.| .+..   ....|.|+|||++.+++ ++||++.|+|.++.. ......|+++..             
T Consensus        52 ~~~nP~Wne~f~f-~v~~---~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~-------------  114 (136)
T 1wfj_A           52 MGTTPEWNETFIF-TVSE---GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK-------------  114 (136)
T ss_dssp             CCSSCEEEEEEEE-EEES---SCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE-------------
T ss_pred             CCCCCccCcEEEE-EECC---CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec-------------
Confidence            5899999999999 4554   47899999999999998 999999999999943 223344444431             


Q ss_pred             ccceeceEEEEEEEEeCC
Q psy12137         79 EECWQHGKIFLTLCFSTK   96 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~~~~   96 (224)
                       .....|+|++++.|.+.
T Consensus       115 -~~~~~G~i~l~l~~~p~  131 (136)
T 1wfj_A          115 -DEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             -TTEEEEEEEEEEEEEEC
T ss_pred             -CCccCEEEEEEEEEEeC
Confidence             13688999999999874

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.37  E-value=5e-13  Score=97.17  Aligned_cols=62  Identities=23%  Similarity=0.207  Sum_probs=52.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC-Ccccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP-HISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~-~~~~~~~~~l   63 (224)
                      ||+||+|||+|.| .|+..++....|+|.|||+|.+++ ++||++.++|+++.. ......|.+|
T Consensus        90 ~tlnP~wnE~F~f-~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L  153 (155)
T 2z0u_A           90 ASDTLVFNEVFWV-SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL  153 (155)
T ss_dssp             CCSSEEEEEEEEE-ECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEE
T ss_pred             CCCCCccccEEEE-EcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEc
Confidence            6899999999999 688888878899999999999999 999999999999953 4445555544

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.36  E-value=3.7e-12  Score=91.73  Aligned_cols=78  Identities=26%  Similarity=0.422  Sum_probs=58.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCC-----------CC-ccceeEEeeccccCCCcccceeeccccccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-----------GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYP   68 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~-----------~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~   68 (224)
                      +|+||+|||+|.| .+...   ...|.|.|||.|..           ++ ++||++.++|.++.  .....|++|..   
T Consensus        58 ~t~nP~Wne~f~f-~v~~~---~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~---  128 (148)
T 3kwu_A           58 GNLNPVWEENFHF-ECHNS---SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDK---  128 (148)
T ss_dssp             SCSSCEEEEEEEE-EECST---TCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBC---
T ss_pred             CCCCCCcccEEEE-EecCC---CCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEccc---
Confidence            5899999999999 56544   47899999999986           67 99999999999983  33445555542   


Q ss_pred             CCCcccccCcccceeceEEEEEEEEeC
Q psy12137         69 VPREEEVWGEEECWQHGKIFLTLCFST   95 (224)
Q Consensus        69 l~~~~~~~~~~~~~~~g~l~i~~~~~~   95 (224)
                         .     .......|+|++++.|..
T Consensus       129 ---~-----~~~~~~~G~i~l~l~~e~  147 (148)
T 3kwu_A          129 ---R-----TDKSAVSGAIRLHISVEI  147 (148)
T ss_dssp             ---S-----STTCCCCCEEEEEEEEEC
T ss_pred             ---C-----CCCCCCceEEEEEEEEEe
Confidence               1     111347799999999863

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.35  E-value=1.5e-12  Score=93.34  Aligned_cols=63  Identities=30%  Similarity=0.518  Sum_probs=55.6

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      +|+||+|||+|.| .++..++....|.|+|||+|.+++ ++||++.++|.++........|++|.
T Consensus        78 ~t~nP~wne~f~f-~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  141 (143)
T 3f04_A           78 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             SCSSCEEEEEEEE-CCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred             CCCCCcCcCeEEE-eecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence            5899999999999 688777777899999999999988 99999999999998777777777664

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.35  E-value=3.5e-12  Score=94.65  Aligned_cols=86  Identities=22%  Similarity=0.429  Sum_probs=57.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCccc-ceeecccccccCCCcccccCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR-DLCLNLCKHYPVPREEEVWGE   78 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~   78 (224)
                      +++||+|||+|.| .+...   ...|.|.|||++.+++ ++||++.|+|.++...... .. .....|++|....     
T Consensus        55 ~t~nP~Wne~f~f-~v~~~---~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~-~~~~~w~~L~~~~-----  124 (176)
T 3m7f_B           55 KSLNPKWNEEILF-RVLPQ---RHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMER-PYTFKDFVLHPRS-----  124 (176)
T ss_dssp             SCSSCEEEEEEEE-EECTT---TCEEEEEEEECC----CEEEEEEEEESCSCCBC-------CCCCEEEECBCSS-----
T ss_pred             CCCCCcccceEEE-EEcCC---CCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccc-cccccEEEccccC-----
Confidence            5899999999999 56644   5789999999999988 9999999999999765433 10 0001244443211     


Q ss_pred             ccceeceEEEEEEEEeCC
Q psy12137         79 EECWQHGKIFLTLCFSTK   96 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~~~~   96 (224)
                      ......|+|.+++.|.+.
T Consensus       125 ~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B          125 HKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             TTCCCCSEEEEEEEECC-
T ss_pred             CCCccCEEEEEEEEEEeC
Confidence            123578999999999875

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.34  E-value=5.5e-14  Score=119.95  Aligned_cols=97  Identities=15%  Similarity=0.255  Sum_probs=11.5

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCC---CCCeeceEEEEEeecCcccccEEEEEEEE
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT---LNPIFNEEFAIETKITELSKQTLVITVWD  173 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~---~~p~~~e~f~f~~~~~~~~~~~l~i~v~~  173 (224)
                      .+.|.|.|++|++|+.++     ||||++++.   +....+|++++++   .||.|||+|.|.+.+.   ...|.|+|||
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~---~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~---~~~L~v~V~d   78 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLD---DMLYARTTSKPRSASGDTVFWGEHFEFNNLPA---VRALRLHLYR   78 (483)
T ss_dssp             EECC-----------------------------------------------------CCEECC-----------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEEC---CeEEeeeeEEeCCCCCCCCccccEEEEecCCC---ccEEEEEEEe
Confidence            356899999999998765     899999983   2256799999998   9999999999996432   2689999999


Q ss_pred             C-C---CCCCCceeEEEEEecCCCC--Cccchhhhhh
Q psy12137        174 K-D---YGKSNDYLGCLELCCNSKG--DRLRHWVDMM  204 (224)
Q Consensus       174 ~-~---~~~~~~~lG~~~l~l~~~~--~~~~~w~~l~  204 (224)
                      . +   ..+++++||++.|++....  ...++|++|.
T Consensus        79 ~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           79 DSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             ----------------------------CCEECC---
T ss_pred             cCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence            4 4   3678999999999998642  3445566553

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.34  E-value=4.1e-12  Score=89.72  Aligned_cols=50  Identities=18%  Similarity=0.352  Sum_probs=42.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~   55 (224)
                      +|+||+|||+|.| .+...   ...|.|+|||+| +++ ++||++.|+|+++....
T Consensus        42 ~t~nP~WnE~f~f-~v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           42 RGSQPSWEQDFMF-EINRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             ESSSCEEEEEEEE-EECCC---SSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCS
T ss_pred             CCCCceECCEEEE-EEeCC---CCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcC
Confidence            4899999999999 56543   567999999999 888 99999999999986443

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.32  E-value=2.9e-12  Score=90.66  Aligned_cols=77  Identities=29%  Similarity=0.503  Sum_probs=58.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.| .+...   ...|.|+|||+|.+++ ++||++.++|.++....  ..|++|..      ..     .
T Consensus        54 ~t~nP~wne~f~f-~~~~~---~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~------~~-----~  116 (133)
T 2ep6_A           54 KNLNPEWNKVFTF-PIKDI---HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKN------KD-----L  116 (133)
T ss_dssp             SCSSCCCCEEEEE-EESCT---TCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBC------SC-----T
T ss_pred             CCCCCccccEEEE-EecCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeec------CC-----C
Confidence            5899999999999 56533   5789999999999988 99999999999985432  34444432      11     1


Q ss_pred             cceeceEEEEEEEEe
Q psy12137         80 ECWQHGKIFLTLCFS   94 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~   94 (224)
                      .....|+|++++.|.
T Consensus       117 ~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A          117 EQAFKGVIYLEMDLI  131 (133)
T ss_dssp             TSCCSSEEEEEEEEE
T ss_pred             CCccceEEEEEEEEE
Confidence            135789999999875

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=94.07  Aligned_cols=64  Identities=23%  Similarity=0.354  Sum_probs=55.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.| .++..++....|.|.|||+|.+++ ++||++.|+|.++........|..|.+
T Consensus        77 ~t~nP~wne~f~f-~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  141 (147)
T 2enp_A           77 KTQKPVFEERYTF-EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP  141 (147)
T ss_dssp             SCSSCCCCBCCEE-CCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred             CCCCCeEeeeEEE-EeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence            5899999999999 688777777899999999999998 999999999999977666666666654

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.32  E-value=2.6e-12  Score=93.04  Aligned_cols=63  Identities=30%  Similarity=0.518  Sum_probs=54.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      +|+||+|||+|.| .++..++....|.|+|||+|.+++ ++||++.++|.++........|++|.
T Consensus        86 ~t~nP~wne~f~f-~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  149 (152)
T 1rsy_A           86 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  149 (152)
T ss_dssp             TCSSCEEEEEEEE-CCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             CCCCCcCcccEEE-eecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence            5899999999999 688777778899999999999988 99999999999997666666666654

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2.4e-12  Score=92.02  Aligned_cols=65  Identities=25%  Similarity=0.444  Sum_probs=55.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.|..++.+++....|.|+|||++.+++ ++||++.++|.++........|++|.+
T Consensus        70 ~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  135 (141)
T 2d8k_A           70 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP  135 (141)
T ss_dssp             TCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred             CCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence            58999999999994356666777899999999999988 999999999999987766666777654

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.31  E-value=4.4e-12  Score=90.32  Aligned_cols=65  Identities=26%  Similarity=0.547  Sum_probs=54.3

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCccc-ceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR-DLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~-~~~~~l~~   65 (224)
                      +|+||+|||+|.|..++.+++....|.|+|||+|.+++ ++||++.++|.++...... .+|.++..
T Consensus        67 ~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           67 KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             SCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             CCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            58999999999994477777778899999999999988 9999999999999765433 45566654

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.30  E-value=1.3e-12  Score=93.45  Aligned_cols=64  Identities=27%  Similarity=0.437  Sum_probs=53.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      +|+||+|||+|.|..++.+++....|.|+|||+|.+++ ++||++.|+|.++........|++|.
T Consensus        73 ~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  137 (142)
T 1rh8_A           73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK  137 (142)
T ss_dssp             HHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECB
T ss_pred             CCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECC
Confidence            36899999999994377777778899999999999998 99999999999986655555555554

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.30  E-value=2.5e-12  Score=91.97  Aligned_cols=65  Identities=35%  Similarity=0.731  Sum_probs=56.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.|..++..++....|.|.|||++.+++ ++||++.++|.++.......+|++|+.
T Consensus        75 ~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A           75 NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             SCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             CCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            58999999999994377777767899999999999998 999999999999988888888877754

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.29  E-value=1.2e-12  Score=94.30  Aligned_cols=64  Identities=30%  Similarity=0.576  Sum_probs=55.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.| .++..++....|.|.|||+|.+++ ++||++.++|.++........|++|.+
T Consensus        70 ~t~nP~wne~f~f-~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  134 (148)
T 3fdw_A           70 DTVNPLYDETLRY-EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHG  134 (148)
T ss_dssp             SCSSCEEEEEEEE-ECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBC
T ss_pred             CCCCCcEeeEEEE-EeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcC
Confidence            5899999999999 688888878899999999999998 999999999999976665656666644

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=5.8e-12  Score=90.07  Aligned_cols=64  Identities=22%  Similarity=0.355  Sum_probs=52.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCC--C-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--H-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~--~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.| .++..++....|.|.|||++.++  + ++||++.|+|.++........|++|.+
T Consensus        69 ~t~nP~wne~f~f-~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~  135 (142)
T 2dmg_A           69 KTLNPVFDQSFDF-SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE  135 (142)
T ss_dssp             SCSSCEEEEEEEE-CCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred             CCCCCCcCceEEE-EecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence            5899999999999 58777777789999999999875  4 699999999999976655555555543

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.26  E-value=7.2e-12  Score=92.64  Aligned_cols=79  Identities=20%  Similarity=0.214  Sum_probs=59.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcc-----cceeecccccccCCCccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS-----RDLCLNLCKHYPVPREEE   74 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~-----~~~~~~l~~~~~l~~~~~   74 (224)
                      +|+||+|||+|.| .+.    ....|.|+|||+|.+++ ++||++.++|.++.....     ...|++|...        
T Consensus        77 ~tlnP~Wne~f~f-~v~----~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~--------  143 (173)
T 2nq3_A           77 NTNSPKWKQPLTV-IVT----PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD--------  143 (173)
T ss_dssp             SCSSCEEEEEEEE-EEC----TTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES--------
T ss_pred             CCCCCeECCEEEE-EeC----CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC--------
Confidence            5899999999999 563    27799999999999988 999999999999853221     1334444331        


Q ss_pred             ccCcccceeceEEEEEEEEeC
Q psy12137         75 VWGEEECWQHGKIFLTLCFST   95 (224)
Q Consensus        75 ~~~~~~~~~~g~l~i~~~~~~   95 (224)
                         .......|+|.+.+.|..
T Consensus       144 ---~~~~~~~G~L~v~l~~l~  161 (173)
T 2nq3_A          144 ---KEPTETIGDLSICLDGLQ  161 (173)
T ss_dssp             ---SCTTSEEEEEEEEEESEE
T ss_pred             ---CCCCcccEEEEEEEeeee
Confidence               012357899999998763

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.25  E-value=4.1e-11  Score=107.85  Aligned_cols=101  Identities=19%  Similarity=0.280  Sum_probs=79.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCC-C-CCeEeeeeeeC-CCCCeece-EEEEE-eecCcccccEEEEEEEE
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-H-KRKYKTGVKWK-TLNPIFNE-EFAIE-TKITELSKQTLVITVWD  173 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~-~-~~~~~T~~~~~-~~~p~~~e-~f~f~-~~~~~~~~~~l~i~v~~  173 (224)
                      .|.|.|+.|++|+..    ..||||++.+.+.. . ..+++|+++++ +.||+||| +|.|. +...++  ..|.|+|||
T Consensus       726 ~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~D  799 (885)
T 3ohm_B          726 ALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAFE  799 (885)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEEE
T ss_pred             EEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEEc
Confidence            699999999999753    57999999997421 1 13579999876 49999999 79998 643333  489999999


Q ss_pred             CCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCce
Q psy12137        174 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK  210 (224)
Q Consensus       174 ~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~  210 (224)
                      ++    +++||++.|+|+....+++| ..|.+..++.
T Consensus       800 ~d----ddfiG~~~lpL~~L~~GyR~-vpL~~~~g~~  831 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSGYHY-VCLRNEANQP  831 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCEEEE-EEEECTTSCE
T ss_pred             CC----ccEEeeEEEEHHHcCCCceE-EEecCCCCCc
Confidence            86    78999999999998878776 4566655554

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.24  E-value=4.8e-11  Score=107.04  Aligned_cols=102  Identities=20%  Similarity=0.299  Sum_probs=78.3

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC--CCeEeee-eeeC-CCCCeece-EEEE-EeecCcccccEEEEEE
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTG-VKWK-TLNPIFNE-EFAI-ETKITELSKQTLVITV  171 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~--~~~~~T~-~~~~-~~~p~~~e-~f~f-~~~~~~~~~~~l~i~v  171 (224)
                      +.|.|.|++|++|+.    +.+||||++.+.+...  .++++|+ ++++ +.||+||| +|.| .+...++  ..|.|.|
T Consensus       678 ~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el--~~Lr~~V  751 (799)
T 2zkm_X          678 TTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAV  751 (799)
T ss_dssp             EEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEE
T ss_pred             eeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc--cEEEEEE
Confidence            479999999999974    3689999999974221  2467899 7765 58999999 7999 7854444  4899999


Q ss_pred             EECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCce
Q psy12137        172 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK  210 (224)
Q Consensus       172 ~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~  210 (224)
                      ||++    +++||++.|+++....+++ |..|.+..++.
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G~r-~v~L~~~~g~~  785 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSGYH-HLCLHSESNMP  785 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCEEE-EEEEECTTCCE
T ss_pred             EEeC----CCccceEeeehhhcCCCcE-EEeccCCCCCC
Confidence            9986    7899999999998776654 45555544443

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.23  E-value=5e-11  Score=106.63  Aligned_cols=103  Identities=15%  Similarity=0.285  Sum_probs=80.7

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC---CeEeeeeeeC-CCCCeeceE-EEEE-eecCcccccEEEEEE
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKWK-TLNPIFNEE-FAIE-TKITELSKQTLVITV  171 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~---~~~~T~~~~~-~~~p~~~e~-f~f~-~~~~~~~~~~l~i~v  171 (224)
                      ..|.|.|+.|++|+..    .+||||++.+.+....   ++++|+++++ +.||+|||+ |.|. +...++  ..|.|.|
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~V  723 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRIIV  723 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEEE
Confidence            4799999999999753    5899999999742211   5679999886 599999997 9998 754444  5899999


Q ss_pred             EECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCcee
Q psy12137        172 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH  211 (224)
Q Consensus       172 ~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~  211 (224)
                      ||++    +++||++.|+|+....+++| ..|.+..++..
T Consensus       724 ~D~d----ddfiG~~~ipL~~L~~GyR~-vpL~~~~g~~~  758 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLDGIKPGYRH-VPLRNESNRPL  758 (816)
T ss_dssp             EETT----SCEEEEEEEESTTCCCEEEE-EEEECTTSCEE
T ss_pred             EecC----CCeeeEEEEEHHHcCCcceE-EEEeCCCCCCC
Confidence            9974    78999999999998878765 55665555543

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.23  E-value=1.9e-11  Score=85.81  Aligned_cols=62  Identities=19%  Similarity=0.362  Sum_probs=46.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCC---CccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~---~~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +|+||+|||+|.|..++.+++....|.|+|||++.++   .++||++.++|+++..+. ...|++|
T Consensus        64 ~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L  128 (129)
T 2bwq_A           64 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL  128 (129)
T ss_dssp             SBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             CCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence            5899999999999535667777889999999999887   389999999999997543 4444443

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.22  E-value=1.7e-11  Score=90.48  Aligned_cols=61  Identities=25%  Similarity=0.353  Sum_probs=51.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEE-eCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVL-DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~-d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.| .+...   ...|.|.|| |+|.+++ ++||++.|+|+++........|++|..
T Consensus        77 ~t~nP~wne~f~f-~v~~~---~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~  139 (171)
T 2q3x_A           77 KTLDPLYQQSLVF-DESPQ---GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP  139 (171)
T ss_dssp             SCSSCEEEEEEEC-SSCCT---TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBC
T ss_pred             CCCCCCCCcEEEE-EecCC---CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCC
Confidence            5899999999999 56544   678999999 9999998 999999999999986666666666654

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.20  E-value=4.3e-11  Score=87.85  Aligned_cols=49  Identities=18%  Similarity=0.378  Sum_probs=42.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH   54 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~   54 (224)
                      +|+||+|||+|.| .+...   ...|.|+|||+| +++ ++||++.|+|.++...
T Consensus        51 ~t~nP~WnE~f~f-~v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~~  100 (167)
T 2cjs_A           51 RGSQPSWEQDFMF-EINRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQS  100 (167)
T ss_dssp             ESSSCEEEEEEEE-ECCCT---TSEEEEEEEECC-SSCCEEEEEEEEEGGGSCBC
T ss_pred             CCCCCCCCCEEEE-EeeCC---CCEEEEEEEECC-CCCCceEEEEEEEHHHhccc
Confidence            4899999999999 56543   567999999999 888 9999999999998644

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.19  E-value=3.2e-11  Score=85.10  Aligned_cols=79  Identities=27%  Similarity=0.386  Sum_probs=55.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCC----CccceeEEeecccc-CCCcccceeecccccccCCCcccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG----HDFLGEARFPLNRL-RPHISRDLCLNLCKHYPVPREEEV   75 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~----~~~lG~~~i~l~~~-~~~~~~~~~~~l~~~~~l~~~~~~   75 (224)
                      +|+||+|||+|.| .+...    ..|.|+|||+|.++    .++||++.++++.+ ........+++|....        
T Consensus        48 ~t~nP~wne~f~f-~v~~~----~~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~--------  114 (132)
T 3pyc_A           48 NTLDPKWNQHYDL-YVGKT----DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLN--------  114 (132)
T ss_dssp             SCSSCEEEEEEEE-EEETT----CCEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSS--------
T ss_pred             CCCCCCccCEEEE-EeCCC----CEEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecC--------
Confidence            5899999999999 45332    35999999999876    38999999999988 3333334445553311        


Q ss_pred             cCcccceeceEEEEEEEE
Q psy12137         76 WGEEECWQHGKIFLTLCF   93 (224)
Q Consensus        76 ~~~~~~~~~g~l~i~~~~   93 (224)
                       +.......|+|.+++.+
T Consensus       115 -~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A          115 -PSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             -TTCCCCCCSEEEEEEEE
T ss_pred             -CCCCCceeEEEEEEEEc
Confidence             01123568999998864

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.19  E-value=3.2e-11  Score=85.97  Aligned_cols=64  Identities=19%  Similarity=0.341  Sum_probs=51.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCC--C-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--H-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~--~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.|..++..++....|.|+|||++.++  + ++||++.|+|.++..+. ...|++|..
T Consensus        67 ~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~  133 (141)
T 1v27_A           67 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT  133 (141)
T ss_dssp             SCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred             CCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence            5899999999999436667777899999999999887  3 89999999999986543 555555543

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.17  E-value=4e-11  Score=86.43  Aligned_cols=61  Identities=28%  Similarity=0.469  Sum_probs=49.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      +|+||+|||+|.| .+...++ ...|.|+|||+|.+++ ++||++.|+|.++... ....|++|.
T Consensus        77 ~t~nP~wne~f~f-~v~~~~~-~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~  138 (149)
T 1a25_A           77 CSLNPEWNETFRF-QLKESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLL  138 (149)
T ss_dssp             SCSSCEEEEEEEE-ECCSGGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECB
T ss_pred             CCCCCcCCcEEEE-EeccccC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEcc
Confidence            5799999999999 5766555 4689999999999988 9999999999999654 344455553

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.17  E-value=6.7e-11  Score=86.18  Aligned_cols=50  Identities=30%  Similarity=0.476  Sum_probs=45.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      +|+||+|||+|.| .++..++....|.|.|||+|.+++ ++||++.|++..+
T Consensus        71 ~t~nP~wne~f~f-~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A           71 NTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             SCSSCEEEEEEEE-ECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCcccceEEE-EcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCC
Confidence            5899999999999 688888877899999999999988 9999999999864

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.16  E-value=4.7e-11  Score=84.77  Aligned_cols=50  Identities=28%  Similarity=0.529  Sum_probs=45.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      +|+||+|||+|.| .++..++....|.|+|||+|.+++ ++||++.++|.++
T Consensus        62 ~t~nP~wne~f~f-~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           62 RNLNPIFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             SCSSCEEEEEEEE-ECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSC
T ss_pred             CCCCCcCcceEEE-ECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccC
Confidence            5799999999999 688888777899999999999988 9999999999864

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.13  E-value=1.1e-10  Score=85.59  Aligned_cols=50  Identities=32%  Similarity=0.587  Sum_probs=45.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      +|+||+|||+|.| .+...++....|.|.|||+|.+++ ++||++.|+|.++
T Consensus        83 ~t~nP~wne~f~f-~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A           83 KTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             SCSSCEEEEEEEE-ECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCcccceEEE-EcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence            5899999999999 688877778899999999999988 9999999999875

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.12  E-value=3e-11  Score=87.47  Aligned_cols=49  Identities=24%  Similarity=0.358  Sum_probs=45.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNR   50 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~   50 (224)
                      +|+||+|||+|.| .++..++....|.|.|||+|.+++ ++||++.|+|.+
T Consensus        76 ~t~nP~wne~f~f-~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A           76 CTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             SCSSEEEEEEEEE-ECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred             CCCCCeecceEEE-ECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence            5899999999999 688887777899999999999988 999999999987

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.12  E-value=6.2e-11  Score=85.84  Aligned_cols=63  Identities=22%  Similarity=0.300  Sum_probs=50.2

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC--ccceeEEeeccccCC-Ccccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH--DFLGEARFPLNRLRP-HISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~--~~lG~~~i~l~~~~~-~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.| .++..++. ..|.|.|||+|.+++  ++||++.++|.++.. ......|++|.+
T Consensus        72 ~t~nP~wne~f~f-~v~~~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~  137 (153)
T 3fbk_A           72 DCRDPAFHEHFFF-PVQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG  137 (153)
T ss_dssp             TCSSCEEEEEEEE-ECCGGGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred             CCCCCccccEEEE-ecccHHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence            5899999999999 67667774 459999999998764  899999999999974 455555555544

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=98.94  E-value=8.5e-10  Score=94.79  Aligned_cols=78  Identities=21%  Similarity=0.454  Sum_probs=56.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.| .+.  ......|+|.|||+|.+++ ++||++.++|.++.......  .++..|+++.         
T Consensus       428 ~t~nP~w~e~f~f-~~~--~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~--~~~~~~~~l~---------  493 (510)
T 3jzy_A          428 DTLNPKWNFNCQF-FIK--DLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESK--GPMTRRLLLH---------  493 (510)
T ss_dssp             SCSSCEEEEEEEE-EES--CTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHH--CSCCEEEECB---------
T ss_pred             CCCCCccCceEEE-Eec--CCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCC--CceeeeecCC---------
Confidence            5899999999999 453  3345789999999999998 99999999999996543211  1223333332         


Q ss_pred             cceeceEEEEEEEE
Q psy12137         80 ECWQHGKIFLTLCF   93 (224)
Q Consensus        80 ~~~~~g~l~i~~~~   93 (224)
                       ....|+|.+++.+
T Consensus       494 -~~~~G~i~l~~~l  506 (510)
T 3jzy_A          494 -EVPTGEVWVRFDL  506 (510)
T ss_dssp             -SSSSCEEEEEEEE
T ss_pred             -CCCCceEEEEEEE
Confidence             2466888888765

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=98.75  E-value=3e-08  Score=86.92  Aligned_cols=76  Identities=24%  Similarity=0.479  Sum_probs=55.9

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE   80 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~   80 (224)
                      ++||+|||+|.| .+...++  ..|+|.|||+|.+++ ++||++.++|..+....   .+++|.+..         |.  
T Consensus       547 g~NP~WnE~f~F-~v~~~el--~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~---------g~--  609 (624)
T 1djx_A          547 GFNPRWDMEFEF-EVTVPDL--ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKN---------GD--  609 (624)
T ss_dssp             SSSCEEEEEEEE-EESCGGG--CEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTT---------SC--
T ss_pred             CCCCccCceEEE-EEecCCC--CEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCC---------cC--
Confidence            399999999999 5665544  589999999999988 99999999999986432   245553311         11  


Q ss_pred             ceeceEEEEEEEEe
Q psy12137         81 CWQHGKIFLTLCFS   94 (224)
Q Consensus        81 ~~~~g~l~i~~~~~   94 (224)
                      ....+.|.+.+.|.
T Consensus       610 ~~~~~~L~v~i~~~  623 (624)
T 1djx_A          610 QHPSATLFVKISIQ  623 (624)
T ss_dssp             EEEEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEEE
Confidence            13467787777763

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=98.73  E-value=1.9e-08  Score=86.50  Aligned_cols=47  Identities=23%  Similarity=0.251  Sum_probs=39.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN   49 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~   49 (224)
                      +|+||+|||+|.|. +... ...+.|+|+|||+|..++ ++||++.++|.
T Consensus       434 ~tlNP~Wne~f~f~-~~~~-~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~  481 (540)
T 3nsj_A          434 NNNNPRWTDKMDFE-NVLL-STGGPLRVQVWDADYGWDDDLLGSCDRSPH  481 (540)
T ss_dssp             SCSSCBCCCCEEEE-EEET-TTCCCEEEEEEECCSSSCCEEEEEEEECCC
T ss_pred             CCCCCCCCeEEEEE-EecC-CCCCEEEEEEEECCCCCCCCEEEEEEEEee
Confidence            68999999999994 3211 136789999999999988 99999999987

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.66  E-value=5.5e-07  Score=61.44  Aligned_cols=106  Identities=14%  Similarity=0.098  Sum_probs=70.3

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEee-eeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKT-GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  176 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T-~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~  176 (224)
                      ..|+|...++.--+.+......||||.+.+.........+| ..+++|..|.|||.|.-.+..    ...|.|.|++...
T Consensus         6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh~a~   81 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMRAAE   81 (126)
T ss_dssp             CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT----TCEEEEEEEEETT
T ss_pred             ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC----CEEEEEEEEcCCC
Confidence            45666665554322222233689999999831110012244 677789999999999988742    3689999997543


Q ss_pred             CCCCceeEEEEEecCCCCCccchhhhhhcC---CCceeEeeeecCCCC
Q psy12137        177 GKSNDYLGCLELCCNSKGDRLRHWVDMMKY---PDHKHEGIHNLSIKP  221 (224)
Q Consensus       177 ~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~---~~~~~~~wh~l~~~~  221 (224)
                          ++++.++|++..          |+.+   .+...+-|.-|.|.+
T Consensus        82 ----~fvAn~tV~~ed----------L~~~c~~~~g~~e~WvdLeP~G  115 (126)
T 1yrk_A           82 ----EPVSEVTVGVSV----------LAERCKKNNGKAEFWLDLQPQA  115 (126)
T ss_dssp             ----EEEEEEEEEHHH----------HHHHHHTTTTEEEEEEECBSSC
T ss_pred             ----CeeeEEEEEHHH----------HHhhhccCCCceEEEEecccCc
Confidence                899999999864          3222   345778888888864

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=98.61  E-value=3.4e-08  Score=87.68  Aligned_cols=62  Identities=19%  Similarity=0.368  Sum_probs=51.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      +|+||+|||+|.| .+...  ....|+|+|||+|.++.++||++.|+|.++........|++|.+
T Consensus        65 ~tlNPvWNEtF~F-~v~~~--~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           65 NDINPVWNETFEF-ILDPN--QENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             TCSSCEEEEEEEE-EECTT--SCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred             CCCCCeeeeEEEE-EecCC--CCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEecCC
Confidence            5899999999999 45542  46789999999998777899999999999977666777777754

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=98.60  E-value=7.8e-09  Score=88.19  Aligned_cols=58  Identities=16%  Similarity=0.236  Sum_probs=8.9

Q ss_pred             CCCeeccEEEECccCccccccCeEEEEEEeC-C---CCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          3 INPEFHEKLTFYSVSETDLSLQSLHILVLDD-D---KYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~-d---~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      +||+|||+|.|. +...   ...|.|.|||. |   +.++ ++||++.|++.++......+.|++|.
T Consensus        53 lnP~WnE~F~f~-~~~~---~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           53 DTVFWGEHFEFN-NLPA---VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             ------CCEECC----------------------------------------------CCEECC---
T ss_pred             CCCccccEEEEe-cCCC---ccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence            999999999994 4332   47899999994 4   3567 99999999999997665555565553

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.57  E-value=7.7e-07  Score=61.55  Aligned_cols=106  Identities=15%  Similarity=0.102  Sum_probs=67.2

Q ss_pred             CEEEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCCCeEee-eeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137         98 RALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKT-GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~~~~~T-~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      ..|+|...+..-.+... .....||||.+.+...-.....+| ..+++|..|.|||.|.-.+..    ...|.|.|++..
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh~a   85 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK----GRVMQIIVKGKN   85 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS----SCEEEEEEECSS
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC----CeEEEEEEEcCC
Confidence            44566665554333221 123679999999832110022566 666779999999999977742    368999999654


Q ss_pred             CCCCCceeEEEEEecCCCCCccchhhhhhcC---CCceeEeeeecCCCC
Q psy12137        176 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKY---PDHKHEGIHNLSIKP  221 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~---~~~~~~~wh~l~~~~  221 (224)
                      .    ++++.++|++..          |+.+   .+...+-|.-|.|.+
T Consensus        86 ~----~fVAn~tV~~ed----------L~~~ck~~~g~~e~WvdLeP~G  120 (138)
T 2enj_A           86 V----DLISETTVELYS----------LAERCRKNNGKTEIWLELKPQG  120 (138)
T ss_dssp             C----SCCEEEEEESHH----------HHHHHHHTTTCEEEEEECBSSC
T ss_pred             C----CeeeEEEEEHHH----------HHhhhccCCCceEEEEecccCc
Confidence            3    799999999864          2221   234566676666643

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.48  E-value=3.9e-07  Score=62.18  Aligned_cols=68  Identities=13%  Similarity=0.294  Sum_probs=55.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccC-----CCcccceeecccccccCCCcccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR-----PHISRDLCLNLCKHYPVPREEEV   75 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~-----~~~~~~~~~~l~~~~~l~~~~~~   75 (224)
                      +|+.|+|||+|.- .|.    ..+.|.|.|++...   +|+..|.|+++++.     .+...+.|+.|            
T Consensus        52 kT~~P~Wne~Fd~-~V~----~Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~g~~e~WvdL------------  111 (126)
T 1yrk_A           52 PTMYPEWKSTFDA-HIY----EGRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNNGKAEFWLDL------------  111 (126)
T ss_dssp             CCBCCCTTCEEEE-ECC----TTCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------
T ss_pred             CCCCcCccceEEe-eee----CCEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEec------------
Confidence            5899999999997 343    36799999995543   99999999999997     44566777777            


Q ss_pred             cCcccceeceEEEEEEEEe
Q psy12137         76 WGEEECWQHGKIFLTLCFS   94 (224)
Q Consensus        76 ~~~~~~~~~g~l~i~~~~~   94 (224)
                            +..|+|++.+.|.
T Consensus       112 ------eP~Gkl~~~i~~~  124 (126)
T 1yrk_A          112 ------QPQAKVLMSVQYF  124 (126)
T ss_dssp             ------BSSCEEEEEEEEE
T ss_pred             ------ccCcEEEEEEEEe
Confidence                  5689999999886

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.42  E-value=5.5e-07  Score=62.28  Aligned_cols=69  Identities=16%  Similarity=0.318  Sum_probs=55.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccC-----CCcccceeecccccccCCCcccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR-----PHISRDLCLNLCKHYPVPREEEV   75 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~-----~~~~~~~~~~l~~~~~l~~~~~~   75 (224)
                      +|..|+|||+|.-+ |.    ..+.|.|.|++...   +|+..|.|+++++.     .+...+.|+.|            
T Consensus        57 kT~~P~Wne~Fd~~-V~----~Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdL------------  116 (138)
T 2enj_A           57 PTMYPPWDSTFDAH-IN----KGRVMQIIVKGKNV---DLISETTVELYSLAERCRKNNGKTEIWLEL------------  116 (138)
T ss_dssp             EEECCCSSSEEEEC-CC----SSCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTTTCEEEEEEC------------
T ss_pred             CCCCccccceEeee-EE----CCeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEec------------
Confidence            47899999999974 43    36799999994432   99999999999997     44566777777            


Q ss_pred             cCcccceeceEEEEEEEEeC
Q psy12137         76 WGEEECWQHGKIFLTLCFST   95 (224)
Q Consensus        76 ~~~~~~~~~g~l~i~~~~~~   95 (224)
                            +..|+|++.+.|..
T Consensus       117 ------eP~Gkl~v~i~~~~  130 (138)
T 2enj_A          117 ------KPQGRMLMNARYFL  130 (138)
T ss_dssp             ------BSSCEEEEEEEECC
T ss_pred             ------ccCcEEEEEEEEEE
Confidence                  56899999999863

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.24  E-value=5.2e-07  Score=80.10  Aligned_cols=60  Identities=28%  Similarity=0.475  Sum_probs=47.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +|+||+|||+|.| .+...+. ...|.|+|||+|..++ ++||++.+++.++..... ..|..+
T Consensus       218 ~tlnP~wne~f~f-~~~~~~~-~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~~-~~w~~L  278 (674)
T 3pfq_A          218 SSLNPEWNETFRF-QLKESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKL  278 (674)
T ss_dssp             SCSSCEEEEEEEE-ECCSTTT-TCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCCE-EEEEEC
T ss_pred             cccCCCccceeee-ecccCCc-cceeeeEEeecccccccccccccccchhhhccCCc-ccceee
Confidence            5899999999999 5665554 5679999999999999 999999999999865432 334433

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.20  E-value=3.6e-06  Score=76.06  Aligned_cols=74  Identities=20%  Similarity=0.305  Sum_probs=51.6

Q ss_pred             CCCCeecc-EEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137          2 TINPEFHE-KLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE   80 (224)
Q Consensus         2 t~nP~w~e-~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~   80 (224)
                      ++||+||| +|.|..|...++  ..|+|.|||+|   .++||++.+||..+...-   ..++|.+..           ..
T Consensus       770 glNPvWnEe~F~F~~V~~pel--a~Lrf~V~D~d---ddfiG~~~lpL~~L~~Gy---R~vpL~~~~-----------g~  830 (885)
T 3ohm_B          770 SFNPVWDEEPFDFPKVVLPTL--ASLRIAAFEEG---GKFVGHRILPVSAIRSGY---HYVCLRNEA-----------NQ  830 (885)
T ss_dssp             SSSCBCCCCCEEEEEESCGGG--CEEEEEEEETT---TEEEEEEEEETTTCCCEE---EEEEEECTT-----------SC
T ss_pred             CcCCeeccceeEEeeEEcCCc--CEEEEEEEcCC---ccEEeeEEEEHHHcCCCc---eEEEecCCC-----------CC
Confidence            59999999 699942655554  37999999986   689999999999985431   224443311           11


Q ss_pred             ceeceEEEEEEEEe
Q psy12137         81 CWQHGKIFLTLCFS   94 (224)
Q Consensus        81 ~~~~g~l~i~~~~~   94 (224)
                      ....|.|.+.+.+.
T Consensus       831 ~l~~atLfv~i~~~  844 (885)
T 3ohm_B          831 PLCLPALLIYTEAS  844 (885)
T ss_dssp             EEEEEEEEEEEEEE
T ss_pred             ccCceEEEEEEEEE
Confidence            24567777777665

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.14  E-value=6.4e-06  Score=74.11  Aligned_cols=48  Identities=31%  Similarity=0.641  Sum_probs=39.4

Q ss_pred             CCCCCeecc-EEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCC
Q psy12137          1 RTINPEFHE-KLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRP   53 (224)
Q Consensus         1 ~t~nP~w~e-~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~   53 (224)
                      |++||+||| +|.|..|...++.  .|+|.|||+|   .++||++.+||..+..
T Consensus       723 n~~NPvWnEe~f~F~~v~~~el~--~Lr~~V~D~d---~d~iG~~~ipl~~L~~  771 (799)
T 2zkm_X          723 NSINPVWKEEPFVFEKILMPELA--SLRVAVMEEG---NKFLGHRIIPINALNS  771 (799)
T ss_dssp             CCSSCBCCCCCEEEEEESSGGGC--EEEEEEEETT---TEEEEEEEEEGGGBCC
T ss_pred             CCCCCeeecceEEEEEEccCCcc--EEEEEEEEeC---CCccceEeeehhhcCC
Confidence            369999999 7999335555553  8999999986   6899999999999854

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.08  E-value=1e-05  Score=72.68  Aligned_cols=48  Identities=29%  Similarity=0.654  Sum_probs=39.4

Q ss_pred             CCCCCeeccE-EEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCC
Q psy12137          1 RTINPEFHEK-LTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRP   53 (224)
Q Consensus         1 ~t~nP~w~e~-f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~   53 (224)
                      |++||+|||+ |.|..|...++  ..|+|.|||++   .++||++.+||..+..
T Consensus       695 nglNPvWNE~~F~F~~v~~pel--a~Lrf~V~D~d---ddfiG~~~ipL~~L~~  743 (816)
T 3qr0_A          695 NGMDPYYDEKVFVFKKVVLPDL--AVVRIIVSEEN---GKFIGHRVMPLDGIKP  743 (816)
T ss_dssp             CSSCCBCCCCCEEEEEESCGGG--CEEEEEEEETT---SCEEEEEEEESTTCCC
T ss_pred             CCCCCeEcCceeEEccccCCCc--cEEEEEEEecC---CCeeeEEEEEHHHcCC
Confidence            3699999998 99942665555  48999999974   5899999999999864

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=97.11  E-value=0.019  Score=43.15  Aligned_cols=60  Identities=15%  Similarity=0.212  Sum_probs=48.5

Q ss_pred             CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC----CCCceeEEEEEecCCC
Q psy12137        134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG----KSNDYLGCLELCCNSK  193 (224)
Q Consensus       134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~----~~~~~lG~~~l~l~~~  193 (224)
                      ..++|.+...+.+|.|+|++.+.++.+...+..|.|++++..--    ..+..+|-++++|-..
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~  140 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRY  140 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCT
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccC
Confidence            56788888889999999999999998888888999999875421    1234789999998643

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=96.01  E-value=0.067  Score=48.96  Aligned_cols=94  Identities=9%  Similarity=0.089  Sum_probs=66.9

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEE
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVW  172 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~  172 (224)
                      -...+.|.|..+.++...   ...+.||.+.+..++..  ....|..+....+|.|||.+.|++...++. ++.|.|+||
T Consensus       215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence            367899999999998653   34688999988765422  345566665567899999999997766665 467999999


Q ss_pred             ECCCC--C----------CCceeEEEEEecCC
Q psy12137        173 DKDYG--K----------SNDYLGCLELCCNS  192 (224)
Q Consensus       173 ~~~~~--~----------~~~~lG~~~l~l~~  192 (224)
                      +....  +          .+..+|.+.+++-.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  323 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFD  323 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBC
T ss_pred             EecCCccCccccccccccccceEEEEeeeEEC
Confidence            85321  1          23589999999875

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=94.96  E-value=0.3  Score=45.30  Aligned_cols=94  Identities=13%  Similarity=0.073  Sum_probs=65.6

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEE
Q psy12137         97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWD  173 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~  173 (224)
                      ...+.|+|..+.++.... ....+.||.+.+..++..  ....|+.+. ..++.|||.+.|++...++. ++.|.|+||+
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            568899999998875432 234688999998765533  344555443 45778999999998766665 4679999998


Q ss_pred             CCCC----CCCceeEEEEEecCC
Q psy12137        174 KDYG----KSNDYLGCLELCCNS  192 (224)
Q Consensus       174 ~~~~----~~~~~lG~~~l~l~~  192 (224)
                      ....    ..+..||.+.+++-.
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd  454 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFD  454 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBC
T ss_pred             ecCccCcccccceeEEeeeeeEc
Confidence            6532    123579999999874

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=93.14  E-value=0.12  Score=48.05  Aligned_cols=94  Identities=13%  Similarity=0.107  Sum_probs=64.1

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEE
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVW  172 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~  172 (224)
                      -...+.|+|..+.++...   ...+.||.+.+..++..  ....|..+....+|.|||.+.|++...++. ++.|.|+||
T Consensus       351 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~  427 (1092)
T 2y3a_A          351 NNNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVY  427 (1092)
T ss_dssp             CCSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECC
T ss_pred             cCCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEE
Confidence            357899999999988653   35688888887654422  334565555567899999999997766665 467999999


Q ss_pred             ECCC---C-------------------CCCceeEEEEEecCC
Q psy12137        173 DKDY---G-------------------KSNDYLGCLELCCNS  192 (224)
Q Consensus       173 ~~~~---~-------------------~~~~~lG~~~l~l~~  192 (224)
                      +...   .                   +....+|.+.+++-.
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  469 (1092)
T 2y3a_A          428 AVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFD  469 (1092)
T ss_dssp             CC------------------------------CCEEEEESBC
T ss_pred             EecCccccccccccccccccccccccccccceeEEEeeeeEC
Confidence            8531   0                   112388999998774

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=91.35  E-value=0.43  Score=35.84  Aligned_cols=48  Identities=15%  Similarity=0.218  Sum_probs=38.5

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCC---C--ccceeEEeeccc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---H--DFLGEARFPLNR   50 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~---~--~~lG~~~i~l~~   50 (224)
                      +-+|.|+|++.+ .++.++.....|.|.+++.....   +  ..+|.+-+||-+
T Consensus        87 nk~P~w~EtIKi-~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           87 VKQPRWFETVKV-AIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             CSSCCCCEEEEE-EECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             CCCCCceEeEEE-eeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            458999999999 89999999999999999876321   2  467888888653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	7e-32
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-04
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-29
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-27
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-04
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-25
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-04
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-23
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	5e-22
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	4e-07
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	9e-22
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	7e-04
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	4e-18
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	5e-18
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-05
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-17
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-04
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	3e-17
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-12
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	4e-12
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	0.002
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	8e-12
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	4e-04
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-10
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	8e-09
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	8e-09
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	0.003
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-06
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	1e-05

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  111 bits (278), Expect = 7e-32
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
           G++ ++LC+ +    L V ++K  +L   D +G SDP++K+ L     +  K KT VK  
Sbjct: 2   GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
           T N +FNE F  +     L + ++   V D + G  N+ +G L L   ++G    HW ++
Sbjct: 62  TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEI 121

Query: 204 MKYPDHKHEGIHNL 217
             +P  +    H L
Sbjct: 122 CDFPRRQIAKWHML 135

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 2/72 (2%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
            T N  F+E   F  +    L   S+  LVLD ++   ++ +G                 
Sbjct: 61  CTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWK 119

Query: 60  CLNLCKHYPVPR 71
            +       + +
Sbjct: 120 EICDFPRRQIAK 131

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (261), Expect = 2e-29
 Identities = 70/134 (52%), Positives = 99/134 (73%), Gaps = 1/134 (0%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 143
           GKI ++L +ST++  LIV +I+C +L  MD+NG+SDPF+KL+LKPD   K K+KT +K K
Sbjct: 2   GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
           TLNP FNEEF  + K ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + 
Sbjct: 62  TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYEC 121

Query: 204 MKYPDHKHEGIHNL 217
           +K  D K E  H L
Sbjct: 122 LKNKDKKIERWHQL 135

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 99.5 bits (247), Expect = 5e-27
 Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY-KTGVKWK 143
           G I  +L +      L V +++  NL  MD  G SDP++K++L  +  + K  KT +K  
Sbjct: 12  GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
           TLNP +NE F+ E    ++ K  +V+TV D D    ND +G + +  NS G  LRHW DM
Sbjct: 72  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131

Query: 204 MKYPDHKHEGIHNL 217
           +  P       H L
Sbjct: 132 LANPRRPIAQWHTL 145

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
            T+NP ++E  +F  V    +    + + VLD DK G +D +G+     N     +    
Sbjct: 71  NTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWS 129

Query: 60  CLNLCKHYPVPR 71
            +      P+ +
Sbjct: 130 DMLANPRRPIAQ 141

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.6 bits (237), Expect = 1e-25
 Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 3/127 (2%)

Query: 79  EECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKT 138
           +E  + GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K++T
Sbjct: 15  KEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFET 73

Query: 139 GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDR 196
            V  KTLNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G  ++  N+   G  
Sbjct: 74  KVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV 133

Query: 197 LRHWVDM 203
              W D+
Sbjct: 134 TEEWRDL 140

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 4   NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLN 62
           NP F+E+ TF  V  ++L  ++L + V D D++  HD +GE + P+N +      +   +
Sbjct: 81  NPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139

Query: 63  L 63
           L
Sbjct: 140 L 140

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 90.3 bits (223), Expect = 1e-23
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP-DLHKRKYKTGVKWK 143
           G++  +LC+      L V +IK +NL  MD  GFSDP++K  L       +K KT +K  
Sbjct: 7   GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 66

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDR-LRHWVD 202
           TLNP +NE    +     +    L I V D D    N+ +G   +   +       HW +
Sbjct: 67  TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAE 126

Query: 203 MMKYPDHKHEGIHNLS 218
           M+  P    E  H L 
Sbjct: 127 MLANPRKPVEHWHQLV 142

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (210), Expect = 5e-22
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 5/123 (4%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK-YKTGVKWK 143
           G++ + L F      LIV ++   +L   +     +P++K+Y  PD   +   +T    K
Sbjct: 1   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60

Query: 144 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGK--SNDYLGCLELCCNS-KGDRLRH 199
           TL P +N+ F        E  ++ L IT+WD+   +   +++LG + +   +   D   H
Sbjct: 61  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120

Query: 200 WVD 202
           W  
Sbjct: 121 WYK 123

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRL 51
           +T+ P++++   +  V   +   + L I + D  +      +FLGE    L   
Sbjct: 60  KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 113

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.7 bits (209), Expect = 9e-22
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP-DLHKRKYKTGVKWK 143
           G+I++      +   LIV +    NL+PMD NG SDP++KL L P    + K KT     
Sbjct: 4   GRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 61

Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 202
           +LNP +NE F  + K ++   + L + +WD D    ND++G L    +  +   +  W  
Sbjct: 62  SLNPEWNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 120

Query: 203 MMKYPDHKH 211
           ++   + ++
Sbjct: 121 LLSQEEGEY 129

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 7e-04
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 53
            ++NPE++E   F  + E+D   + L + + D D    +DF+G   F ++ L+ 
Sbjct: 61  CSLNPEWNETFRF-QLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQK 112

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.4 bits (184), Expect = 4e-18
 Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
           G+I   L +      L+V +++  +L   DSNGFSDP++K+YL PD  K+K++T V  KT
Sbjct: 5   GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 63

Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK----GDRLRHW 200
           LNPIFNE F     + EL+++ L  +V+D D    +D +G + L    +          W
Sbjct: 64  LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 123

Query: 201 VDMMK 205
            D+++
Sbjct: 124 RDILE 128

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 5e-18
 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 83  QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVK 141
             G +F +L ++ +++A +VN+ +   L  MD     SDP+IK+ + P+  K K KT V 
Sbjct: 7   GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVL 65

Query: 142 WKTLNPIFNEEF-AIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRL 197
            KTL+P F+E F       T++ +  L  T+   D    +D +G + +  +       ++
Sbjct: 66  RKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKM 125

Query: 198 RHWVDMMKYP 207
               +++  P
Sbjct: 126 LMNREIISGP 135

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 4   NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 53
           +P F E  TFY +  T +   +LH  +L  D++   D +GE   PL+ +  
Sbjct: 70  DPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL 120

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.4 bits (179), Expect = 3e-17
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 15/132 (11%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH----------KR 134
           G+I L + +      LI+++++  NL+P D+NG+SDPF+K+YL P             + 
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64

Query: 135 KYKTGVKWKTLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 191
           K +T    K+LNP +N+    +   + +L K+TL +TVWD D   SND+LG   ++L   
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

Query: 192 SKGDRLRHWVDM 203
           S  D    W  +
Sbjct: 125 SHLDNTPRWYPL 136

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
           +++NPE+++ + + S+S   L  ++L + V D D++  +DFLGE    L+      +   
Sbjct: 73  KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPR 132

Query: 60  CLNLCKH 66
              L + 
Sbjct: 133 WYPLKEQ 139

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 3e-17
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 85  GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
            K+   L +  +K  L V  ++       + +G  D +++  +       + +T +K + 
Sbjct: 13  PKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69

Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 202
           L+  + E   +     EL   TL +T+   D    +   G   L L   S       W +
Sbjct: 70  LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129

Query: 203 MMK 205
           +  
Sbjct: 130 LKT 132

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.2 bits (145), Expect = 2e-12
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 96  KKRALIVNLIKCTNL--IPMDSNGFSDPFIKLYLK--PDLHKRKYKTGVKWKTLNPIFNE 151
           +   L V +I    L  +  + N   DP + + +         +    +     NP ++ 
Sbjct: 2   RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 61

Query: 152 EFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 202
           EF  E  +T      +   V D D    ND++G   +      +G R  H + 
Sbjct: 62  EFEFE--VTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLS 112

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.4 bits (143), Expect = 4e-12
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V L+    L   D     DP+++L  +    + +     +     P +NE F     +
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT--V 66

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRLRHWVDMMKYPDHKHEGIHN 216
           +E +   L   ++DKD G  +D +G   +       +G       +++K  D +++G   
Sbjct: 67  SEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--DEEYKGEIW 123

Query: 217 LSIK 220
           +++ 
Sbjct: 124 VALS 127

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
               PE++E   F +VSE       L   + D D     D +GEA  PL  +    S   
Sbjct: 52  MGTTPEWNETFIF-TVSEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP 107

Query: 60  CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 93
                  Y V ++EE          G+I++ L F
Sbjct: 108 -----TAYNVVKDEEY--------KGEIWVALSF 128

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 8e-12
 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 100 LIVNLIKCTNLIP---MDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 156
             V +++ T +      D     DP+++L++       + +T      +NP++NE F   
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEFI 63

Query: 157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHKHEGI 214
             +    +  L IT+ D +Y   ++ LG      +S   G++           +   E +
Sbjct: 64  --LDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIF----NQVTEMV 116

Query: 215 HNLSIKPLSS 224
             +S++  SS
Sbjct: 117 LEMSLEVASS 126

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 8/60 (13%), Positives = 20/60 (33%)

Query: 4   NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 63
           N         +           L I ++D +    + LG A F ++ ++    +++    
Sbjct: 50  NDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 109

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 1e-10
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
           L V ++K  +L+  D +G SDPF  L L       + +T   +K LNP +N+ F   T  
Sbjct: 8   LQVKVLKAADLLAADFSGKSDPFCLLELG----NDRLQTHTVYKNLNPEWNKVF---TFP 60

Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 212
            +     L +TV+D+D  K  D+LG + +   S  D   +   +      +  
Sbjct: 61  IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAF 113

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 8e-09
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 10/110 (9%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETK 158
           +  N  +  +L     +  S PF  + +K  L   R      K  T+ P +   F     
Sbjct: 7   ISFNSYELGSLQAE--DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64

Query: 159 ITELSKQTLVITVWDKDYGKSNDY---LGCLELCCNSKGDRLRHWVDMMK 205
                 + + I +        ++    +  L   C     +   W+D+  
Sbjct: 65  E----GRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP 110

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 8e-09
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 14/110 (12%)

Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLK--PDLHKRKYKTG--VKWKTLNPIFNEEFAI 155
           L + +I    L           ++++ L   P   KR+Y+T       ++NP++ EE  +
Sbjct: 3   LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 156 ETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVDM 203
             KI      +L + V ++     N +LG   + +   + G         
Sbjct: 59  FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLCLHSE 104

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 1   RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLC 60
            +INP + E+  F         L SL + V+++    + FLG    P+N L       LC
Sbjct: 46  NSINPVWKEE-PFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY-HHLC 100

Query: 61  LNLCKHYPVP 70
           L+   + P+ 
Sbjct: 101 LHSESNMPLT 110

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 95  TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 154
           T K  L + +I         +     P++++ +     K +        T +P + +   
Sbjct: 3   TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE----KCNNTNSPKWKQPL- 57

Query: 155 IETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
               +       L   VW     KS+  LG   L
Sbjct: 58  ---TVIVTPVSKLHFRVWSHQTLKSDVLLGTAAL 88

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 22/121 (18%)

Query: 100 LIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPI 148
           L + + +  +L P                  DP+I L +      +   T  K KT +P 
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQ---TATKQKTNSPA 64

Query: 149 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGC----LELCCNSKGDRLRHWVDMM 204
           +++EF  +        + + + V+       +D++       E    +       W+D+ 
Sbjct: 65  WHDEFVTDVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120

Query: 205 K 205
            
Sbjct: 121 P 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	100.0
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	100.0
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.98
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.97
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.93
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.93
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.92
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.92
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.92
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.91
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.91
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.85
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.81
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.8
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.8
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.76
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.76
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.76
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.55
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.52
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.44
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.36
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.36
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.34
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.32
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.31
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.29
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.27
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.21
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.21
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.19
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.17
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.14
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.14
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.11
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.07
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.05
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	98.95
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	98.84
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	98.65
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.96
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	86.69

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.1e-33  Score=197.44  Aligned_cols=136  Identities=29%  Similarity=0.502  Sum_probs=121.0

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      +|+|++++.|.+..+.|.|.|++|+||+..+..+.+||||++++.+.... .+++|++++++.+|.|||+|.|.++..++
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~   80 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESL   80 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSS
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHh
Confidence            59999999999999999999999999999888889999999999775433 56789999999999999999999988888


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      ....|.|.|||++.++++++||++.|++.+.+.+.+||++|+++|++.+++||+|.+
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~  137 (138)
T d1w15a_          81 EEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD  137 (138)
T ss_dssp             TTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CccEEEEEEEeCCCCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence            888899999999999999999999999999888899999999999999999999975

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.7e-32  Score=192.56  Aligned_cols=136  Identities=51%  Similarity=0.879  Sum_probs=125.1

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137         84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  162 (224)
Q Consensus        84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~  162 (224)
                      +|+|++++.|.+..+.|.|.|++|+||+..+..+.+||||++++.++... .+++|++++++.+|.|||+|.|.++..++
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l   80 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL   80 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHc
Confidence            59999999999999999999999999999888889999999999876544 77899999999999999999999988888


Q ss_pred             cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137        163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  219 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~  219 (224)
                      ....|.|.||+++.++++++||++.+++++.+.+.+||++|+.+|++.+++||+|+.
T Consensus        81 ~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~Wh~L~~  137 (137)
T d2cm5a1          81 AKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN  137 (137)
T ss_dssp             GGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC
T ss_pred             cccEEEEEeeeCCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCCCeeeEceeccC
Confidence            888999999999999999999999999998888889999999999999999999973

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=1.2e-31  Score=195.05  Aligned_cols=139  Identities=35%  Similarity=0.552  Sum_probs=129.2

Q ss_pred             eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecC
Q psy12137         82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKIT  160 (224)
Q Consensus        82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~  160 (224)
                      +..|+|.+++.|.+..++|.|.|++|+||+..+..+.+||||++++.+.+.+ ..++|++++++.||+|||+|.|.++..
T Consensus         9 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~   88 (157)
T d1uowa_           9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE   88 (157)
T ss_dssp             GCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             eeeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHH
Confidence            6799999999999999999999999999999888899999999999776534 567899999999999999999999888


Q ss_pred             cccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137        161 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       161 ~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      ++....|.|+||+++.++++++||++.|++.+.+.+..||.+|+..|++.+++||+|.+.
T Consensus        89 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_          89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             GGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             HcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            888889999999999999999999999999998888999999999999999999999864

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=6.2e-32  Score=194.13  Aligned_cols=140  Identities=30%  Similarity=0.479  Sum_probs=127.7

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeec
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  159 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~  159 (224)
                      ....|+|++++.|.+..+.|.|.|++|+||+..+..+.+||||++++.+.... .+++|++++++.+|.|||+|.|.++.
T Consensus         3 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~   82 (145)
T d1dqva2           3 KADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP   82 (145)
T ss_dssp             CSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCS
T ss_pred             cCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEeh
Confidence            36789999999999999999999999999998888889999999998765544 57899999999999999999999987


Q ss_pred             CcccccEEEEEEEECCCCCCCceeEEEEEecCCCC-CccchhhhhhcCCCceeEeeeecCCC
Q psy12137        160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNLSIK  220 (224)
Q Consensus       160 ~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~-~~~~~w~~l~~~~~~~~~~wh~l~~~  220 (224)
                      .++....|.|.||+++.++++++||++.|+++... .+..||++|+.+|++.+++||+|.|.
T Consensus        83 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~p~~~i~~Wh~L~~~  144 (145)
T d1dqva2          83 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE  144 (145)
T ss_dssp             GGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             hhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCchhhHHHHHHHhCCCCeeeEeEECCCC
Confidence            78888889999999999999999999999998764 56789999999999999999999975

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=2.3e-25  Score=156.57  Aligned_cols=109  Identities=39%  Similarity=0.621  Sum_probs=98.8

Q ss_pred             eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137         82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE  161 (224)
Q Consensus        82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~  161 (224)
                      ...|+|.+++.|.+..++|.|.|++|+||+..+..|.+||||++++.+.. .++++|++++++.+|.|||+|.|.+...+
T Consensus         2 ~p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~~P~wne~f~f~v~~~~   80 (130)
T d1dqva1           2 APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR-KKKFQTKVHRKTLNPIFNETFQFSVPLAE   80 (130)
T ss_dssp             CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTST-TSCEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred             CCcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCC-CceEeceeEcCCCCeeeeeEEEEEEchHH
Confidence            35699999999999999999999999999999888999999999986543 46789999999999999999999998777


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEecC
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELCCN  191 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~  191 (224)
                      +....|.|+|||++.++++++||++.|++.
T Consensus        81 ~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~  110 (130)
T d1dqva1          81 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNL  110 (130)
T ss_dssp             GSSCCCEEEEEECCSSSCCCEEEEEECCCT
T ss_pred             cCCCeEEEEEEEcCCCCCCceEEEEEECch
Confidence            777889999999999899999999999864

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=6.1e-25  Score=156.88  Aligned_cols=125  Identities=34%  Similarity=0.564  Sum_probs=108.1

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecC
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT  160 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~  160 (224)
                      ....|+|++++.|....+.|.|.|++|+||+..+..|.+||||++++.+.. .++.+|++++++.+|.|||+|.|.+...
T Consensus        17 ~~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~-~~~~kT~~~~~t~~P~wne~f~f~i~~~   95 (143)
T d1rsya_          17 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYS   95 (143)
T ss_dssp             -CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC-CSCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred             hhcceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCC-CeeEEEEEeccccCcceeeeeEEEEEee
Confidence            367899999999999999999999999999998888999999999987653 4678999999999999999999998766


Q ss_pred             cccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137        161 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  218 (224)
Q Consensus       161 ~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~  218 (224)
                      ++....|.|+|||++.++++++||++.|+|....            .++....|+.|+
T Consensus        96 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~------------~~~~~~~W~~L~  141 (143)
T d1rsya_          96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD------------FGHVTEEWRDLQ  141 (143)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCC------------CSSCEEEEEECB
T ss_pred             ccCCceEEEEEEEcCCCCCCcEEEEEEEEchhcc------------CCCCCccEEeCC
Confidence            7777899999999999989999999999998742            233455666664

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.1e-24  Score=153.04  Aligned_cols=128  Identities=19%  Similarity=0.163  Sum_probs=110.6

Q ss_pred             eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137         82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE  161 (224)
Q Consensus        82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~  161 (224)
                      ...|+|++++.|....+.|.|.|++|++|+.   .|.+||||++++.+..+...++|++++++.+|.|||.|.|.+...+
T Consensus        10 ~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~   86 (138)
T d1wfma_          10 NQAPKLHYCLDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE   86 (138)
T ss_dssp             SSCCEEEEEEEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred             CcCCEEEEEEEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehh
Confidence            6679999999999999999999999999953   4678999999998765446789999999999999999999998778


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCCCC
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLSS  224 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~~~  224 (224)
                      +....|.|+|||++.++++++||++.|+|....            .....+.|+.|.|+.++|
T Consensus        87 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~------------~~~~~~~W~~L~~~~~~~  137 (138)
T d1wfma_          87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS------------VPLGAAQWGELKTSGPSS  137 (138)
T ss_dssp             STTCEEEEEEEECCSSCTTSCSEEEEEESSSSS------------SCTTCCEEEECCCCSCCC
T ss_pred             ccceEEEEEEeeecccccceeeeEEEEEhHHcc------------CCCCceEeEeCCCCCCCC
Confidence            888899999999999999999999999998743            133467788888877664

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.9e-25  Score=152.27  Aligned_cols=110  Identities=25%  Similarity=0.475  Sum_probs=94.8

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEE-eecCcc
Q psy12137         85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKITEL  162 (224)
Q Consensus        85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~-~~~~~~  162 (224)
                      |+|++++.|.+..++|.|.|++|+||+..+..+.+||||++++.++... .+++|++++++.+|.|||+|.|. +...++
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l   80 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF   80 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence            8999999999999999999999999999888899999999999876544 77899999999999999999997 776777


Q ss_pred             cccEEEEEEEECCCCC--CCceeEEEEEecCCCC
Q psy12137        163 SKQTLVITVWDKDYGK--SNDYLGCLELCCNSKG  194 (224)
Q Consensus       163 ~~~~l~i~v~~~~~~~--~~~~lG~~~l~l~~~~  194 (224)
                      ....|.|+|||++.++  ++++||++.|++....
T Consensus        81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~  114 (125)
T d2bwqa1          81 RERMLEITLWDQARVREEESEFLGEILIELETAL  114 (125)
T ss_dssp             GGCEEEEEEEEC-------CEEEEEEEEEGGGCC
T ss_pred             CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcC
Confidence            7789999999998753  4569999999998643

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=6.5e-24  Score=149.42  Aligned_cols=107  Identities=36%  Similarity=0.649  Sum_probs=94.2

Q ss_pred             eceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137         83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE  161 (224)
Q Consensus        83 ~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~  161 (224)
                      .+|+|.+++.|.  .+.|.|.|++|+||+.++..|.+||||++++.+...+ .+++|++++++.||.|||.|.|.+....
T Consensus         2 ~rG~i~l~~~~~--~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   79 (132)
T d1a25a_           2 RRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD   79 (132)
T ss_dssp             TTCEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred             cccEEEEEEEec--CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc
Confidence            579999999884  6899999999999999999999999999998765544 7889999999999999999999986432


Q ss_pred             ccccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137        162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNS  192 (224)
Q Consensus       162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~  192 (224)
                       ....|.|+|||++.++++++||++.|++..
T Consensus        80 -~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~  109 (132)
T d1a25a_          80 -KDRRLSVEIWDWDLTSRNDFMGSLSFGISE  109 (132)
T ss_dssp             -GGCEEEEEEEECCSSSCCEEEEEEEEEHHH
T ss_pred             -cCCEEeEEEEecCCCCCCcEeEEEEEeHHH
Confidence             335799999999999999999999999876

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=6.9e-25  Score=156.44  Aligned_cols=128  Identities=33%  Similarity=0.489  Sum_probs=107.1

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC----------CeEeeeeeeCCCCCeec
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK----------RKYKTGVKWKTLNPIFN  150 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~----------~~~~T~~~~~~~~p~~~  150 (224)
                      ....|+|++++.|.  .+.|.|.|++|+||+..+..|.+||||++++.+....          .+++|++++++.||.||
T Consensus         3 ~p~~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wn   80 (142)
T d1rh8a_           3 HPITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN   80 (142)
T ss_dssp             CCCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEE
T ss_pred             CCcceEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeE
Confidence            35789999999996  6899999999999999999999999999998654422          23679999999999999


Q ss_pred             eEEEEE-eecCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137        151 EEFAIE-TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  222 (224)
Q Consensus       151 e~f~f~-~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~  222 (224)
                      |.|.|. +...++....|.|+|||++.++++++||++.|+|....            .++.+.+||+|.+.+-
T Consensus        81 e~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~------------~~~~~~~W~~L~~~~~  141 (142)
T d1rh8a_          81 QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS------------HLDNTPRWYPLKEQTE  141 (142)
T ss_dssp             EEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCG------------GGTTCCEEEECBCCCC
T ss_pred             EEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcC------------CCCCceEEEECcCcCC
Confidence            999998 55556667889999999999989999999999998743            1334678888887653

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.9e-23  Score=147.10  Aligned_cols=112  Identities=29%  Similarity=0.459  Sum_probs=100.0

Q ss_pred             ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCC-CCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEE-ee
Q psy12137         81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG-FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-TK  158 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g-~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~-~~  158 (224)
                      ....|+|++++.|.+..+.|.|.|++|+||+..+..+ .+||||++++.+.. ..+++|++++++.+|.|||+|.|. ++
T Consensus         5 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~~~~   83 (138)
T d1ugka_           5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK-KHKVKTRVLRKTLDPAFDETFTFYGIP   83 (138)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTT-CSEEECCCCSSCSSCEEEEEEEEECCC
T ss_pred             CCCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCC-CEeEeCeeEeCCCCCceeeEEEEeeeC
Confidence            4668999999999999999999999999999887655 47999999997653 578899999999999999999997 66


Q ss_pred             cCcccccEEEEEEEECCCCCCCceeEEEEEecCCC
Q psy12137        159 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK  193 (224)
Q Consensus       159 ~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~  193 (224)
                      ..++....|.|+|||++.++++++||++.|+|+..
T Consensus        84 ~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~  118 (138)
T d1ugka_          84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI  118 (138)
T ss_dssp             STTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTC
T ss_pred             HHHcccceEEEEEEECCCCCCCcEEEEEEEEcccc
Confidence            67777789999999999999999999999999874

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-21  Score=135.78  Aligned_cols=103  Identities=30%  Similarity=0.419  Sum_probs=89.5

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  175 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~  175 (224)
                      ..|.|.|.|++|++|+..+..|.+||||++++    +..+++|++++++.||.|||.|.|.+..  . ...|.|+|||++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~----~~~~~~T~~~~~t~nP~wne~f~f~v~~--~-~~~L~i~V~d~~   76 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLEL----GNDRLQTHTVYKNLNPEWNKVFTFPIKD--I-HDVLEVTVFDED   76 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEE----TTEEEECCCCSSCSSCCCCEEEEEEESC--T-TCEEEEEEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEc----CCeEEEEEeeCCceeEEEEEEEEEEEec--c-CceeEEEEEEcc
Confidence            46789999999999999998999999999998    6678999999999999999999999853  3 368999999999


Q ss_pred             CCCCCceeEEEEEecCCCCCccchhhhhhc
Q psy12137        176 YGKSNDYLGCLELCCNSKGDRLRHWVDMMK  205 (224)
Q Consensus       176 ~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~  205 (224)
                      .++++++||++.|++.....+..+|+.|..
T Consensus        77 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~~  106 (126)
T d2ep6a1          77 GDKPPDFLGKVAIPLLSIRDGQPNCYVLKN  106 (126)
T ss_dssp             TTEEEEECCBCEEEGGGCCSSCCEECCCBC
T ss_pred             CCcCcceEEEEEEEHHHCCCCCceEEEccc
Confidence            988899999999999886655566766543

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.81  E-value=2.4e-19  Score=126.27  Aligned_cols=107  Identities=18%  Similarity=0.282  Sum_probs=87.6

Q ss_pred             CCEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccc
Q psy12137         97 KRALIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSK  164 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~-----------~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~  164 (224)
                      .|.|.|.|++|++|++.+           ..+.+||||++++    +. ...+|+++.++.+|.|||.|.|.+..    .
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l----~~~~~~~T~~~~~t~~P~Wne~f~f~v~~----~   76 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTNSPAWHDEFVTDVCN----G   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE----TTEEEEECCCCSSCSSCEEEEEEEEEEEE----E
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEe----CCCcCcEeeEEcCCCCccCccEEEEEEec----C
Confidence            578999999999998743           3567899999999    45 55689999999999999999999853    2


Q ss_pred             cEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137        165 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  221 (224)
Q Consensus       165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~  221 (224)
                      ..|.|+|||++.++++++||++.|++..          +..........|++|.|.+
T Consensus        77 ~~l~i~V~d~~~~~~d~~iG~~~i~l~~----------l~~~~~~~~~~w~~L~p~G  123 (136)
T d1gmia_          77 RKIELAVFHDAPIGYDDFVANCTIQFEE----------LLQNGSRHFEDWIDLEPEG  123 (136)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHH----------HTSTTCSEEEEEEECBSSC
T ss_pred             CceEEEEEEecCCCCceeEEEEEEEHHH----------hhhcCCcceeEEEeCCCCc
Confidence            5899999999999999999999999864          4444555667788877653

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=7.1e-19  Score=123.08  Aligned_cols=111  Identities=22%  Similarity=0.293  Sum_probs=85.5

Q ss_pred             CEEEEEEEEeecCCCC--CCCCCCCcEEEEEEecCCCC-CeEeeeeeeCC-CCCeeceEEEEEeecCcccccEEEEEEEE
Q psy12137         98 RALIVNLIKCTNLIPM--DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKT-LNPIFNEEFAIETKITELSKQTLVITVWD  173 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~--~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~-~~p~~~e~f~f~~~~~~~~~~~l~i~v~~  173 (224)
                      ..|.|.|++|++|+..  +..+.+||||++++.+.... .+++|++++++ .||.|||+|.|.+....  ...|.|+|||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~--~~~L~~~V~D   81 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD--LALVRFMVED   81 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG--GCEEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcch--hceEEEEEEE
Confidence            4789999999999754  44678999999998754333 67888877655 79999999999975333  3579999999


Q ss_pred             CCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCcee
Q psy12137        174 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH  211 (224)
Q Consensus       174 ~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~  211 (224)
                      ++.++++++||++.|+|+....+. +|..|.+..++.+
T Consensus        82 ~d~~~~d~~iG~~~i~l~~l~~g~-~~~~L~~~~g~~~  118 (131)
T d1qasa2          82 YDSSSKNDFIGQSTIPWNSLKQGY-RHVHLLSKNGDQH  118 (131)
T ss_dssp             CCTTTCCEEEEEEEEEGGGBCCEE-EEEEEECTTSCEE
T ss_pred             ecCCCCCcEEEEEEEEEeccCCCC-EEEECCCCCcCCC
Confidence            999989999999999999876554 4667766666554

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.5e-19  Score=125.77  Aligned_cols=93  Identities=20%  Similarity=0.359  Sum_probs=77.4

Q ss_pred             CCEEEEEEEEeecCCCCC---CCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEE
Q psy12137         97 KRALIVNLIKCTNLIPMD---SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD  173 (224)
Q Consensus        97 ~~~l~v~i~~a~~L~~~~---~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~  173 (224)
                      .++|.|+|++|+||+...   ..|.+||||++++.+. ..++++|++++++.+|.|||+|.|.+.  ......|.|+|||
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~-~~~~~~T~~~~~t~nP~wne~f~f~i~--~~~~~~L~v~V~d   78 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEFILD--PNQENVLEITLMD   78 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTS-TTCCEECCCCTTCSSCEEEEEEEEEEC--TTSCCEEEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCc-ccceeEeeecCCCccceeceeeeeccc--CcccCcEEEEEEE
Confidence            468999999999998743   2478999999998432 237789999999999999999999984  4455689999999


Q ss_pred             CCCCCCCceeEEEEEecCCC
Q psy12137        174 KDYGKSNDYLGCLELCCNSK  193 (224)
Q Consensus       174 ~~~~~~~~~lG~~~l~l~~~  193 (224)
                      ++.. ++++||++.++|...
T Consensus        79 ~d~~-~d~~lG~~~i~L~~l   97 (126)
T d1rlwa_          79 ANYV-MDETLGTATFTVSSM   97 (126)
T ss_dssp             CCSS-CCEEEEEEEEEGGGS
T ss_pred             CCCC-CCCeEEEEEEEHHHc
Confidence            9876 578999999999874

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=8.3e-19  Score=123.55  Aligned_cols=103  Identities=22%  Similarity=0.282  Sum_probs=84.8

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeee-CCCCCeeceEEEEEeecCcccccEEEEEEEEC
Q psy12137         96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDK  174 (224)
Q Consensus        96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~-~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~  174 (224)
                      ..|.|.|.|++|++|+..+..|.+||||++++    +....+|++++ ++.||.|||+|.|.+...   ...|.|+|||+
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~----~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~---~~~L~v~V~d~   80 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC----RTQDQKSNVAEGMGTTPEWNETFIFTVSEG---TTELKAKIFDK   80 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEES----SSCEEECCCCTTCCSSCEEEEEEEEEEESS---CCEEEEEECCS
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEE----eeeeEEEEEEecCCCcEEEeeEEEEEEcCc---cceEEEEEEEe
Confidence            35678999999999999988899999999998    45677788776 588999999999998632   35699999999


Q ss_pred             CCCCCCceeEEEEEecCCC---CCccchhhhhhc
Q psy12137        175 DYGKSNDYLGCLELCCNSK---GDRLRHWVDMMK  205 (224)
Q Consensus       175 ~~~~~~~~lG~~~l~l~~~---~~~~~~w~~l~~  205 (224)
                      +.++++++||++.|+|...   +....+|+.+..
T Consensus        81 d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~  114 (136)
T d1wfja_          81 DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK  114 (136)
T ss_dssp             SSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE
T ss_pred             cCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC
Confidence            9998999999999998752   333456777654

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=3.9e-18  Score=118.26  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=71.2

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  177 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~  177 (224)
                      +.|.|+|.+|++|...+   ..||||++.+    ++.+.+|.+++. .||.|||.|.|.+.  .+ ...|.|+|||++..
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~----~~~k~~T~~~k~-~nP~Wne~f~f~v~--~~-~~~L~v~V~d~~~~   70 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKV----QNVKSTTIAVRG-SQPSWEQDFMFEIN--RL-DLGLTVEVWNKGLI   70 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEE----TTEEEECCCEES-SSCEEEEEEEEEEC--CC-SSEEEEEEEECCSS
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEe----CCEEEEEEEecC-CCCeEEEEEEEeec--cc-cceEEEEEEeCCCc
Confidence            56899999999998755   5799999999    667888888875 59999999999994  33 46899999999876


Q ss_pred             CCCceeEEEEEecCC
Q psy12137        178 KSNDYLGCLELCCNS  192 (224)
Q Consensus       178 ~~~~~lG~~~l~l~~  192 (224)
                       +|++||++.|+|+.
T Consensus        71 -~d~~lG~~~I~L~~   84 (128)
T d2cjta1          71 -WDTMVGTVWIPLRT   84 (128)
T ss_dssp             -CEEEEEEEEEEGGG
T ss_pred             -CCcceEEEEEEehh
Confidence             58899999999986

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.2e-18  Score=118.82  Aligned_cols=87  Identities=17%  Similarity=0.170  Sum_probs=77.1

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137         98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  177 (224)
Q Consensus        98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~  177 (224)
                      +.|.|+|++|++++..+..+.+||||++.+    +.+.++|++++++.||.|||.|.|.+..    ...|.|+|||++.+
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~----~~~~~kT~v~~~t~nP~wne~f~f~~~~----~~~l~~~V~d~d~~   77 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTV----DGQSKKTEKCNNTNSPKWKQPLTVIVTP----VSKLHFRVWSHQTL   77 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEE----TTEEEECCCCSSCSSCEEEEEEEEEECT----TCEEEEEEEECCSS
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEE----CCeEEeeEEEEecccEEEcceEEEEEEe----cceeEEEEEEccCC
Confidence            568999999999998888888999999998    6778999999999999999999999853    25899999999999


Q ss_pred             CCCceeEEEEEecCC
Q psy12137        178 KSNDYLGCLELCCNS  192 (224)
Q Consensus       178 ~~~~~lG~~~l~l~~  192 (224)
                      ++|++||++.++|..
T Consensus        78 ~~d~~iG~~~i~L~~   92 (133)
T d2nq3a1          78 KSDVLLGTAALDIYE   92 (133)
T ss_dssp             SCCEEEEEEEEEHHH
T ss_pred             CCCceEEEEEEEHHH
Confidence            999999999999864

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=3.2e-14  Score=97.70  Aligned_cols=104  Identities=17%  Similarity=0.150  Sum_probs=73.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137        101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  179 (224)
Q Consensus       101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~  179 (224)
                      .|.+..+..++  ...+.+||||++++.+.... ..++|.+++++.||.|||+|.|.+..    ...|.|.||+++    
T Consensus         8 ~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~----~~~l~i~V~d~d----   77 (123)
T d1bdya_           8 SFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMRAA----   77 (123)
T ss_dssp             EEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT----TCEEEEEEEEET----
T ss_pred             EEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc----ccEEEEEEEEcc----
Confidence            34444444433  34678999999999654322 45679999999999999999999842    358999999975    


Q ss_pred             CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137        180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  221 (224)
Q Consensus       180 ~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~  221 (224)
                      ++++|.+.+++....       .-....+.....|+.|.|.+
T Consensus        78 d~~~g~~~i~l~~l~-------~~~~~~~~~~~~W~~L~~~G  112 (123)
T d1bdya_          78 EDPMSEVTVGVSVLA-------ERCKKNNGKAEFWLDLQPQA  112 (123)
T ss_dssp             TEEEEEEEEEHHHHH-------HHHHTTTTEEEEEEECBSSC
T ss_pred             ccccCccEEehhhee-------eccccCCCcccEEEeCCCCE
Confidence            679999999976421       11113455777888887653

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.6e-14  Score=95.92  Aligned_cols=101  Identities=21%  Similarity=0.292  Sum_probs=71.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCC--CCCeEeee--eeeCCCCCeeceE-EEEE-eecCcccccEEEEEEE
Q psy12137         99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HKRKYKTG--VKWKTLNPIFNEE-FAIE-TKITELSKQTLVITVW  172 (224)
Q Consensus        99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~--~~~~~~T~--~~~~~~~p~~~e~-f~f~-~~~~~~~~~~l~i~v~  172 (224)
                      .|.|.|+.|++|+..    ..||||++++.+..  ...+.+|+  +..++.||.|||. |.|. +.  ...-..|.|.||
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~--~~~l~~L~f~V~   75 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKIL--MPELASLRVAVM   75 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEES--SGGGCEEEEEEE
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecC--CCcccEEEEEEE
Confidence            589999999999754    47999999997421  12333333  3467899999975 4443 43  333358999999


Q ss_pred             ECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCce
Q psy12137        173 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK  210 (224)
Q Consensus       173 ~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~  210 (224)
                      |++    +++||++.++++....+++| ..|.+..++.
T Consensus        76 D~d----~~~lG~~~ipl~~l~~GyR~-vpL~~~~g~~  108 (122)
T d2zkmx2          76 EEG----NKFLGHRIIPINALNSGYHH-LCLHSESNMP  108 (122)
T ss_dssp             ETT----TEEEEEEEEEGGGBCCEEEE-EEEECTTCCE
T ss_pred             CCC----CCEEEEEEEEcccCcCCceE-EEccCCCcCC
Confidence            975    78999999999987776644 4555555544

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.8e-13  Score=94.42  Aligned_cols=76  Identities=17%  Similarity=0.287  Sum_probs=61.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE   80 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~   80 (224)
                      +++||.|||+|.|. +.  +.....|.|.|||.+..+.++||++.++|+++........|++|.+               
T Consensus        50 ~t~nP~wne~f~f~-i~--~~~~~~L~v~V~d~d~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~---------------  111 (126)
T d1rlwa_          50 NDINPVWNETFEFI-LD--PNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ---------------  111 (126)
T ss_dssp             TCSSCEEEEEEEEE-EC--TTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT---------------
T ss_pred             CCccceeceeeeec-cc--CcccCcEEEEEEECCCCCCCeEEEEEEEHHHccCCCeEEEEEEccC---------------
Confidence            58899999999994 43  3346789999999986555999999999999987777777777743               


Q ss_pred             ceeceEEEEEEEEeC
Q psy12137         81 CWQHGKIFLTLCFST   95 (224)
Q Consensus        81 ~~~~g~l~i~~~~~~   95 (224)
                       ...|+|++++++.+
T Consensus       112 -~~~g~i~~~l~~~~  125 (126)
T d1rlwa_         112 -VTEMVLEMSLEVAS  125 (126)
T ss_dssp             -TEEEEEEEEEECCC
T ss_pred             -CCeEEEEEEEEEEe
Confidence             46799999988754

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=4.8e-13  Score=93.44  Aligned_cols=78  Identities=29%  Similarity=0.420  Sum_probs=58.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcc-cceeecccccccCCCcccccCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS-RDLCLNLCKHYPVPREEEVWGE   78 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~-~~~~~~l~~~~~l~~~~~~~~~   78 (224)
                      +++||+|||+|.| .+...   ...|+|+|||+|.+++ ++||++.|+|.++..... ...|..+..             
T Consensus        52 ~~~nP~Wne~f~f-~v~~~---~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~-------------  114 (136)
T d1wfja_          52 MGTTPEWNETFIF-TVSEG---TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK-------------  114 (136)
T ss_dssp             CCSSCEEEEEEEE-EEESS---CCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE-------------
T ss_pred             CCCcEEEeeEEEE-EEcCc---cceEEEEEEEecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC-------------
Confidence            4789999999999 45543   5679999999999988 899999999999854322 222333211             


Q ss_pred             ccceeceEEEEEEEEeCC
Q psy12137         79 EECWQHGKIFLTLCFSTK   96 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~~~~   96 (224)
                       .....|+|++++.|.+.
T Consensus       115 -~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_         115 -DEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             -TTEEEEEEEEEEEEEEC
T ss_pred             -CCccCEEEEEEEEEEeC
Confidence             13667999999999763

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.4e-13  Score=91.92  Aligned_cols=77  Identities=29%  Similarity=0.505  Sum_probs=57.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE   79 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~   79 (224)
                      +|+||+|||+|.| .++..   ...|.|+|||++.+++ ++||++.|+|+++.....  .|+.+...           ..
T Consensus        47 ~t~nP~wne~f~f-~v~~~---~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~l~~~-----------~~  109 (126)
T d2ep6a1          47 KNLNPEWNKVFTF-PIKDI---HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKNK-----------DL  109 (126)
T ss_dssp             SCSSCCCCEEEEE-EESCT---TCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSCC--EECCCBCS-----------CT
T ss_pred             CceeEEEEEEEEE-EEecc---CceeEEEEEEccCCcCcceEEEEEEEHHHCCCCCc--eEEEcccc-----------CC
Confidence            5889999999999 56543   5789999999999998 999999999999865432  23333221           11


Q ss_pred             cceeceEEEEEEEEe
Q psy12137         80 ECWQHGKIFLTLCFS   94 (224)
Q Consensus        80 ~~~~~g~l~i~~~~~   94 (224)
                      ....+|+|++++.|.
T Consensus       110 ~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1         110 EQAFKGVIYLEMDLI  124 (126)
T ss_dssp             TSCCSSEEEEEEEEE
T ss_pred             CCceeEEEEEEEEEE
Confidence            235679999998875

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.2e-12  Score=91.67  Aligned_cols=64  Identities=19%  Similarity=0.324  Sum_probs=57.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      ++.||+|||+|.| .++..++....|.|.|||++.+++ ++||++.|+|.++........|.+|.+
T Consensus        68 ~~~~P~wne~f~f-~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_          68 RQLHTTWEEGLVL-PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CCSSEECSSCEEE-ECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             CCCCceEeeeEEE-EeeehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            5789999999999 688888888999999999999998 999999999999987777777777765

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=4.3e-13  Score=94.34  Aligned_cols=64  Identities=27%  Similarity=0.429  Sum_probs=55.2

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK   65 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~   65 (224)
                      |+||+|||+|.|..++.+++....|.|.|||+|.+++ ++||++.|+|.++........|++|.+
T Consensus        74 t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~  138 (142)
T d1rh8a_          74 SLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             HHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             CCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcC
Confidence            5799999999996688888888999999999999999 999999999999977666666666644

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=1.7e-12  Score=91.37  Aligned_cols=63  Identities=30%  Similarity=0.518  Sum_probs=55.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC   64 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~   64 (224)
                      +|+||+|||+|.| .++..++....|.|.|||++.+++ ++||++.|+|+++........|++|+
T Consensus        78 ~t~~P~wne~f~f-~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_          78 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             TCSSCEEEEEEEE-CCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             cccCcceeeeeEE-EEEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            5789999999999 688888888899999999999998 89999999999998777666666664

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.29  E-value=2.5e-12  Score=89.72  Aligned_cols=73  Identities=21%  Similarity=0.392  Sum_probs=58.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcc--cceeecccccccCCCcccccC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS--RDLCLNLCKHYPVPREEEVWG   77 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~--~~~~~~l~~~~~l~~~~~~~~   77 (224)
                      ++.||+|||+|.| .++.    .+.|.|.|||.+.+++ ++||++.|+|+++..+..  .+.|++|              
T Consensus        59 ~t~~P~Wne~f~f-~v~~----~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L--------------  119 (136)
T d1gmia_          59 KTNSPAWHDEFVT-DVCN----GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL--------------  119 (136)
T ss_dssp             SCSSCEEEEEEEE-EEEE----ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC--------------
T ss_pred             CCCCccCccEEEE-EEec----CCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeC--------------
Confidence            4789999999999 4542    4689999999999988 999999999999965543  4445555              


Q ss_pred             cccceeceEEEEEEEEeCC
Q psy12137         78 EEECWQHGKIFLTLCFSTK   96 (224)
Q Consensus        78 ~~~~~~~g~l~i~~~~~~~   96 (224)
                          ...|+|++.+.+.++
T Consensus       120 ----~p~G~v~l~v~~~~~  134 (136)
T d1gmia_         120 ----EPEGKVYVIIDLSGS  134 (136)
T ss_dssp             ----BSSCEEEEEEEEEEE
T ss_pred             ----CCCcEEEEEEEEEeC
Confidence                346899998887654

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=8.5e-12  Score=85.80  Aligned_cols=87  Identities=18%  Similarity=0.291  Sum_probs=55.1

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCc--ccceeecccccccCCCcccccCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHI--SRDLCLNLCKHYPVPREEEVWGE   78 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~--~~~~~~~l~~~~~l~~~~~~~~~   78 (224)
                      ++.||+|||+|.| .+...   ...|.|+|||.+..++++||++.|+|+++..+.  ....|++|.... ....-+.+|.
T Consensus        39 k~~nP~Wne~f~f-~v~~~---~~~L~v~V~d~~~~~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~-~~~~gei~gt  113 (128)
T d2cjta1          39 RGSQPSWEQDFMF-EINRL---DLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQA-IMADSEICGT  113 (128)
T ss_dssp             ESSSCEEEEEEEE-EECCC---SSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-----------CC
T ss_pred             cCCCCeEEEEEEE-eeccc---cceEEEEEEeCCCcCCcceEEEEEEehhhccCCCCCCCeeEECCccc-cCCCCEEEee
Confidence            4679999999999 45433   578999999998664499999999999996443  334455553311 1111222332


Q ss_pred             ccceeceEEEEEEEE
Q psy12137         79 EECWQHGKIFLTLCF   93 (224)
Q Consensus        79 ~~~~~~g~l~i~~~~   93 (224)
                      . ....+.|.+.+.|
T Consensus       114 ~-~~~~~~~ll~~~~  127 (128)
T d2cjta1         114 K-DPTFHRILLDAHF  127 (128)
T ss_dssp             S-CCCCCEEEEEEEE
T ss_pred             e-cCCCcEEEEEEEc
Confidence            2 3445577777766

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.9e-11  Score=84.74  Aligned_cols=80  Identities=19%  Similarity=0.203  Sum_probs=55.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcc---cceeecccccccCCCccccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS---RDLCLNLCKHYPVPREEEVW   76 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~---~~~~~~l~~~~~l~~~~~~~   76 (224)
                      +|+||+|||.|.| .+..    ...|.|+|||+|.+++ ++||++.++|.++.....   ...+..+....         
T Consensus        47 ~t~nP~wne~f~f-~~~~----~~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~---------  112 (133)
T d2nq3a1          47 NTNSPKWKQPLTV-IVTP----VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG---------  112 (133)
T ss_dssp             SCSSCEEEEEEEE-EECT----TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEE---------
T ss_pred             ecccEEEcceEEE-EEEe----cceeEEEEEEccCCCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCC---------
Confidence            5799999999999 4543    4589999999999999 999999999998843211   11222221100         


Q ss_pred             CcccceeceEEEEEEEEe
Q psy12137         77 GEEECWQHGKIFLTLCFS   94 (224)
Q Consensus        77 ~~~~~~~~g~l~i~~~~~   94 (224)
                      ........|+|.+.+.+.
T Consensus       113 ~~~~~~~~G~L~v~l~~~  130 (133)
T d2nq3a1         113 DKEPTETIGDLSICLDGL  130 (133)
T ss_dssp             SSCTTSEEEEEEEEEESE
T ss_pred             CCCCceEEEEEEEEEeeE
Confidence            012236779998888754

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=1e-11  Score=85.84  Aligned_cols=62  Identities=29%  Similarity=0.472  Sum_probs=49.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC--cccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH--ISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~--~~~~~~~~l   63 (224)
                      +|+||+|||+|.| .++..++....|.|+|||++.+++ ++||++.|++.....+  .....|.+|
T Consensus        62 ~t~~P~wne~f~f-~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L  126 (130)
T d1dqva1          62 KTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDI  126 (130)
T ss_dssp             SCSSCEEEEEEEE-ECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEEC
T ss_pred             CCCCeeeeeEEEE-EEchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEec
Confidence            5789999999999 788888888899999999999998 9999999986554322  233345554

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=4.5e-11  Score=82.61  Aligned_cols=49  Identities=31%  Similarity=0.598  Sum_probs=41.7

Q ss_pred             CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC
Q psy12137          2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP   53 (224)
Q Consensus         2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~   53 (224)
                      ++||+|||+|.| .+...+  ...|+|+|||+|.+++ ++||++.|+|.++..
T Consensus        54 ~~nP~wne~f~f-~~~~~~--~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~  103 (131)
T d1qasa2          54 GFNPRWDMEFEF-EVTVPD--LALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ  103 (131)
T ss_dssp             SSSCEEEEEEEE-EESCGG--GCEEEEEEEECCTTTCCEEEEEEEEEGGGBCC
T ss_pred             cCCceEEEEEEE-EEEcch--hceEEEEEEEecCCCCCcEEEEEEEEEeccCC
Confidence            589999999999 454443  4579999999999988 899999999999853

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.4e-11  Score=84.79  Aligned_cols=55  Identities=31%  Similarity=0.642  Sum_probs=48.9

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~   55 (224)
                      +++||.|||+|.|..++..++....|+|.|||+|.+++ ++||++.|+|+++....
T Consensus        67 ~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~  122 (138)
T d1ugka_          67 KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE  122 (138)
T ss_dssp             SCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTT
T ss_pred             CCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCC
Confidence            47899999999995588888888999999999999998 99999999999985443

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.8e-11  Score=81.76  Aligned_cols=55  Identities=20%  Similarity=0.401  Sum_probs=44.3

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCC--C-ccceeEEeeccccCCCc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--H-DFLGEARFPLNRLRPHI   55 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~--~-~~lG~~~i~l~~~~~~~   55 (224)
                      +|+||+|||+|.|..++..++....|.|.|||++.++  + ++||++.|+|+++....
T Consensus        60 ~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~  117 (125)
T d2bwqa1          60 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD  117 (125)
T ss_dssp             SBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS
T ss_pred             CCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC
Confidence            4789999999999658888888899999999999764  3 59999999999986554

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=3.6e-11  Score=83.20  Aligned_cols=60  Identities=28%  Similarity=0.485  Sum_probs=47.7

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL   63 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l   63 (224)
                      +|+||+|||+|.| .+...+. ...|.|.|||+|.+++ ++||++.|+|.++... ....|.+|
T Consensus        61 ~t~nP~wne~f~f-~v~~~~~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L  121 (132)
T d1a25a_          61 CSLNPEWNETFRF-QLKESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKL  121 (132)
T ss_dssp             SCSSCEEEEEEEE-ECCSGGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEEC
T ss_pred             CCCCCccceEEEE-EeEcccc-CCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEEC
Confidence            5789999999999 5655433 4689999999999998 8999999999998543 33445554

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=7.7e-11  Score=80.43  Aligned_cols=69  Identities=16%  Similarity=0.302  Sum_probs=53.6

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCC-----CcccceeecccccccCCCcccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRP-----HISRDLCLNLCKHYPVPREEEV   75 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~-----~~~~~~~~~l~~~~~l~~~~~~   75 (224)
                      ||+||+|||+|.| .|..    .+.|.|.|||.|   ++++|.+.+.+..+..     +...+.|+++            
T Consensus        49 kT~nP~WnE~F~~-~v~~----~~~l~i~V~d~d---d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L------------  108 (123)
T d1bdya_          49 PTMYPEWKSTFDA-HIYE----GRVIQIVLMRAA---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------  108 (123)
T ss_dssp             CCBCCCTTCEEEE-ECCT----TCEEEEEEEEET---TEEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------
T ss_pred             CCCCcccceEEEE-EEcc----ccEEEEEEEEcc---ccccCccEEehhheeeccccCCCcccEEEeC------------
Confidence            6899999999999 4542    468999999975   4799999999998842     3345555555            


Q ss_pred             cCcccceeceEEEEEEEEeC
Q psy12137         76 WGEEECWQHGKIFLTLCFST   95 (224)
Q Consensus        76 ~~~~~~~~~g~l~i~~~~~~   95 (224)
                            ...|+|++.+.|..
T Consensus       109 ------~~~Gkl~l~v~~f~  122 (123)
T d1bdya_         109 ------QPQAKVLMCVQYFL  122 (123)
T ss_dssp             ------BSSCEEEEEEEEEE
T ss_pred             ------CCCEEEEEEEEEec
Confidence                  45799999999864

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=1.6e-10  Score=82.32  Aligned_cols=50  Identities=30%  Similarity=0.476  Sum_probs=46.0

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      ++.||+|||+|.| .++..++....|.|.|||++.+++ ++||++.|++...
T Consensus        71 ~t~nP~wne~f~F-~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_          71 NTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             SCSSCEEEEEEEE-ECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             CCCCcccCCeEEE-EecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccC
Confidence            4789999999999 799999888999999999999998 9999999999764

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=1.5e-10  Score=80.57  Aligned_cols=50  Identities=24%  Similarity=0.332  Sum_probs=45.4

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      +|.||.|||+|.| .++..++....|.|.|||++.+++ ++||+|.|++...
T Consensus        61 ~t~~P~wne~f~F-~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          61 CTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             SCSSEEEEEEEEE-ECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred             CCCCCeECcEEEE-EecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence            4789999999999 798888888889999999999998 9999999998754

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=5.7e-10  Score=77.44  Aligned_cols=50  Identities=32%  Similarity=0.587  Sum_probs=45.8

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL   51 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~   51 (224)
                      +|.||+|||+|.| .++..++....|.|.|||++..++ ++||+|.+++..+
T Consensus        61 ~t~~P~wne~f~f-~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          61 KTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             SCSSCEEEEEEEE-ECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCccceEEEE-EeEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCcccc
Confidence            4789999999999 688898888999999999999888 9999999999764

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=3.9e-10  Score=79.15  Aligned_cols=51  Identities=31%  Similarity=0.512  Sum_probs=46.5

Q ss_pred             CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137          1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR   52 (224)
Q Consensus         1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~   52 (224)
                      +|+||+|||+|.| .++..++....|.|.|||++.+++ ++||++.|+++.+.
T Consensus        66 ~t~~P~wne~f~F-~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          66 NTLNPTYNEALVF-DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             SCSSCEEEECCCC-CCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred             CCCCceecceEEE-EEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence            4789999999999 688888888999999999999998 89999999998763

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.4e-08  Score=66.22  Aligned_cols=48  Identities=31%  Similarity=0.644  Sum_probs=36.2

Q ss_pred             CCCCCeeccE-EEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCC
Q psy12137          1 RTINPEFHEK-LTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRP   53 (224)
Q Consensus         1 ~t~nP~w~e~-f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~   53 (224)
                      |++||+|||+ |.|..+...++  ..|+|.|||+|   .++||++.+||+.+..
T Consensus        46 n~~nP~wne~~~~~~~~~~~~l--~~L~f~V~D~d---~~~lG~~~ipl~~l~~   94 (122)
T d2zkmx2          46 NSINPVWKEEPFVFEKILMPEL--ASLRVAVMEEG---NKFLGHRIIPINALNS   94 (122)
T ss_dssp             CCSSCBCCCCCEEEEEESSGGG--CEEEEEEEETT---TEEEEEEEEEGGGBCC
T ss_pred             CeecceEcccEeEEEecCCCcc--cEEEEEEECCC---CCEEEEEEEEcccCcC
Confidence            5799999976 44423444433  58999999975   5899999999998853