Psyllid ID: psy12169

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
MLGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPPTMTTMTYILVNFYISGASHSDRQRGNHDP
cccccccHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccc
ccccHHHHHHHHHHHHHHHHHHEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHccccccccccHHHHHHHHHHHHHHHHccEEEEEHccHcccccccccccccc
mlgslfgctSIWSMVMIAFDRYTVIVKGitakpmtiGGALLRLMFVWVHALLWTlfpffgwnryvpegnltacgtdyltkdwhhrsYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVAtlrsgdqsgtsayvpegnltacgtdyltkdwhhrsYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVAtlrsgdqsgtsAEIKLakvrspptmtTMTYILVNFYisgashsdrqrgnhdp
MLGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVAtlrsgdqsgtsayvpegnLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMnvatlrsgdqsgtsaeiklakvrspptmTTMTYILVNFYISgashsdrqrgnhdp
MLGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPPTMTTMTYILVNFYISGASHSDRQRGNHDP
***SLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVH**************************YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVH**************************************MTTMTYILVNFYIS**************
MLGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHE************************AYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQA*********************LAKVRSPPTMTTMTYILVNFYISGA************
MLGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPPTMTTMTYILVNFYISGAS***********
*LGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMN**TLRSGDQSGTSAYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRS****GTSAEIKLAKVRSPPTMTTMTYILVNFYISGAS***********
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooo
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVRSPPTMTTMTYILVNFYISGASHSDRQRGNHDP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query263 2.2.26 [Sep-21-2011]
O02464377 Opsin-1 OS=Manduca sexta N/A N/A 0.536 0.374 0.723 4e-59
Q95YI3381 Ceropsin OS=Bombyx mori G N/A N/A 0.532 0.367 0.721 7e-59
Q17292378 Rhodopsin OS=Camponotus a N/A N/A 0.543 0.378 0.685 1e-56
Q17296378 Rhodopsin OS=Cataglyphis N/A N/A 0.543 0.378 0.692 1e-56
P35362376 Rhodopsin OS=Sphodromanti N/A N/A 0.543 0.380 0.685 1e-56
Q94741381 Opsin-1 OS=Schistocerca g N/A N/A 0.543 0.375 0.678 3e-56
Q17053377 Rhodopsin, long-wavelengt yes N/A 0.528 0.368 0.657 7e-54
P28678373 Opsin Rh1 OS=Drosophila p yes N/A 0.558 0.394 0.613 3e-51
P06002373 Opsin Rh1 OS=Drosophila m yes N/A 0.558 0.394 0.613 4e-51
P22269371 Opsin Rh1 OS=Calliphora v N/A N/A 0.555 0.393 0.617 1e-50
>sp|O02464|OPS1_MANSE Opsin-1 OS=Manduca sexta GN=OP1 PE=1 SV=2 Back     alignment and function desciption
 Score =  228 bits (581), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 102/141 (72%), Positives = 120/141 (85%)

Query: 3   GSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWN 62
           GSLFGC SIW+M MIAFDRY VIVKGI AKPMT  GALLR++ +WV +L WTL PFFGWN
Sbjct: 134 GSLFGCASIWTMTMIAFDRYNVIVKGIAAKPMTSNGALLRILGIWVFSLAWTLLPFFGWN 193

Query: 63  RYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMR 122
           RYVPEGN+TACGTDYL+K W  RSY++ Y  FVYF+PL+LIIY+Y+FIV+AV+ HEK MR
Sbjct: 194 RYVPEGNMTACGTDYLSKSWVSRSYILIYSVFVYFLPLLLIIYSYFFIVQAVAAHEKAMR 253

Query: 123 EQAKKMNVATLRSGDQSGTSA 143
           EQAKKMNVA+LRS + + TSA
Sbjct: 254 EQAKKMNVASLRSSEAANTSA 274
Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. May play a role in photoperiodic photoreception.
Manduca sexta (taxid: 7130)
>sp|Q95YI3|OPSCE_BOMMO Ceropsin OS=Bombyx mori GN=Bcop PE=1 SV=1 Back     alignment and function description
>sp|Q17292|OPSD_CAMAT Rhodopsin OS=Camponotus atriceps PE=2 SV=1 Back     alignment and function description
>sp|Q17296|OPSD_CATBO Rhodopsin OS=Cataglyphis bombycina PE=2 SV=1 Back     alignment and function description
>sp|P35362|OPSD_SPHSP Rhodopsin OS=Sphodromantis sp. PE=2 SV=1 Back     alignment and function description
>sp|Q94741|OPS1_SCHGR Opsin-1 OS=Schistocerca gregaria GN=Lo1 PE=2 SV=1 Back     alignment and function description
>sp|Q17053|OPSD_APIME Rhodopsin, long-wavelength OS=Apis mellifera PE=1 SV=1 Back     alignment and function description
>sp|P28678|OPS1_DROPS Opsin Rh1 OS=Drosophila pseudoobscura pseudoobscura GN=ninaE PE=1 SV=4 Back     alignment and function description
>sp|P06002|OPS1_DROME Opsin Rh1 OS=Drosophila melanogaster GN=ninaE PE=1 SV=1 Back     alignment and function description
>sp|P22269|OPS1_CALVI Opsin Rh1 OS=Calliphora vicina GN=NINAE PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
4959075341 rhodopsin [Papilio glaucus] 0.536 0.413 0.744 7e-59
172053496177 long wavelength rhodopsin, partial [Chyp 0.543 0.807 0.713 4e-58
34538323167 long-wavelength opsin [Eschatocerus acac 0.539 0.850 0.725 1e-57
115490634284 long wavelength-sensitive opsin, partial 0.536 0.496 0.737 2e-57
172053460176 long wavelength rhodopsin, partial [Plum 0.539 0.806 0.711 2e-57
74956512 377 RecName: Full=Opsin-1; Short=MANOP1; Alt 0.536 0.374 0.723 2e-57
172053526167 long wavelength rhodopsin, partial [Meth 0.543 0.856 0.706 2e-57
172053512170 long wavelength rhodopsin, partial [Eoti 0.543 0.841 0.713 3e-57
172053458181 long wavelength rhodopsin, partial [Plum 0.539 0.784 0.711 4e-57
18124235282 long wavelength-sensitive opsin [Spodopt 0.536 0.5 0.723 4e-57
>gi|4959075|gb|AAD34224.1|AF077193_1 rhodopsin [Papilio glaucus] Back     alignment and taxonomy information
 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 105/141 (74%), Positives = 120/141 (85%)

Query: 3   GSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWN 62
           GSLFGC SIW+M MIAFDRY VIVKGI A+PMT  GALLR++FVW  +L WTL P FGWN
Sbjct: 98  GSLFGCISIWTMTMIAFDRYNVIVKGIAAEPMTKKGALLRILFVWAASLAWTLAPLFGWN 157

Query: 63  RYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMR 122
           RYVPEGN+TACGTDYLTKDW  RSY++ YGFFVYF PL LIIY+YYFIV+AV+ HEK MR
Sbjct: 158 RYVPEGNMTACGTDYLTKDWFSRSYILVYGFFVYFAPLFLIIYSYYFIVKAVAAHEKSMR 217

Query: 123 EQAKKMNVATLRSGDQSGTSA 143
           EQAKKMNVA+LRS + + T+A
Sbjct: 218 EQAKKMNVASLRSSESANTNA 238

Source: Papilio glaucus

Species: Papilio glaucus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|172053496|gb|ACB70909.1| long wavelength rhodopsin, partial [Chyphotes stramineus] Back     alignment and taxonomy information
>gi|34538323|gb|AAQ74150.1| long-wavelength opsin [Eschatocerus acaciae] Back     alignment and taxonomy information
>gi|115490634|gb|ABI97869.1| long wavelength-sensitive opsin, partial [Morpho helenor] Back     alignment and taxonomy information
>gi|172053460|gb|ACB70891.1| long wavelength rhodopsin, partial [Plumarius sp. 2 EMP-2008] Back     alignment and taxonomy information
>gi|74956512|sp|O02464.2|OPS1_MANSE RecName: Full=Opsin-1; Short=MANOP1; AltName: Full=Rhodopsin 1, long-wavelength; AltName: Full=Rhodopsin P520 gi|4210483|gb|AAD11964.1| opsin [Manduca sexta] Back     alignment and taxonomy information
>gi|172053526|gb|ACB70924.1| long wavelength rhodopsin, partial [Methocha sp. 1 EMP-2008] Back     alignment and taxonomy information
>gi|172053512|gb|ACB70917.1| long wavelength rhodopsin, partial [Eotilla mickeli] Back     alignment and taxonomy information
>gi|172053458|gb|ACB70890.1| long wavelength rhodopsin, partial [Plumarius sp. 1 EMP-2008] Back     alignment and taxonomy information
>gi|18124235|gb|AAL59877.1|AF385331_1 long wavelength-sensitive opsin [Spodoptera exigua] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
FB|FBgn0019940369 Rh6 "Rhodopsin 6" [Drosophila 0.543 0.387 0.615 2.6e-49
FB|FBgn0002940373 ninaE "neither inactivation no 0.555 0.391 0.617 9.8e-48
FB|FBgn0003248381 Rh2 "Rhodopsin 2" [Drosophila 0.638 0.440 0.539 1.2e-47
UNIPROTKB|F1NEY8 528 OPN4 "Uncharacterized protein" 0.456 0.227 0.454 1.9e-23
ZFIN|ZDB-GENE-070111-2 594 opn4a "opsin 4a (melanopsin)" 0.425 0.188 0.460 5.5e-22
UNIPROTKB|E1BEK2478 OPN4 "Uncharacterized protein" 0.425 0.234 0.460 7.8e-22
FB|FBgn0003250378 Rh4 "Rhodopsin 4" [Drosophila 0.574 0.399 0.371 9e-22
UNIPROTKB|Q5YKK9487 OPN4 "Melanopsin" [Felis catus 0.425 0.229 0.460 1.1e-21
UNIPROTKB|E2R3W5481 OPN4 "Uncharacterized protein" 0.425 0.232 0.460 1.3e-21
MGI|MGI:1353425 521 Opn4 "opsin 4 (melanopsin)" [M 0.410 0.207 0.461 3.7e-21
FB|FBgn0019940 Rh6 "Rhodopsin 6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 495 (179.3 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 88/143 (61%), Positives = 108/143 (75%)

Query:     1 MLGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFG 60
             M GSLFGC SIWSM +IA+DRY VIVKG+  KP+T   A+LRLM VW     W L P FG
Sbjct:   125 MFGSLFGCVSIWSMTLIAYDRYCVIVKGMARKPLTATAAVLRLMVVWTICGAWALMPLFG 184

Query:    61 WNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQ 120
             WNRYVPEGN+TACGTDY  KDW +RSY+I Y  +VY  PL+ II++Y+ I++AV+ HEK 
Sbjct:   185 WNRYVPEGNMTACGTDYFAKDWWNRSYIIVYSLWVYLTPLLTIIFSYWHIMKAVAAHEKA 244

Query:   121 MREQAKKMNVATLRSGDQSGTSA 143
             MREQAKKMNVA+LR+ +   + A
Sbjct:   245 MREQAKKMNVASLRNSEADKSKA 267
GO:0007602 "phototransduction" evidence=IGI;ISS;NAS
GO:0008020 "G-protein coupled photoreceptor activity" evidence=IGI;ISS;NAS
GO:0016028 "rhabdomere" evidence=IDA
GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0007601 "visual perception" evidence=IEA
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP
GO:0007605 "sensory perception of sound" evidence=IMP
FB|FBgn0002940 ninaE "neither inactivation nor afterpotential E" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0003248 Rh2 "Rhodopsin 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEY8 OPN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070111-2 opn4a "opsin 4a (melanopsin)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEK2 OPN4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0003250 Rh4 "Rhodopsin 4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5YKK9 OPN4 "Melanopsin" [Felis catus (taxid:9685)] Back     alignment and assigned GO terms
UNIPROTKB|E2R3W5 OPN4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1353425 Opn4 "opsin 4 (melanopsin)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q17053OPSD_APIMENo assigned EC number0.65730.52850.3687yesN/A
P28678OPS1_DROPSNo assigned EC number0.61330.55890.3941yesN/A
P06002OPS1_DROMENo assigned EC number0.61330.55890.3941yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 3e-23
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 2e-08
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score = 94.7 bits (236), Expect = 3e-23
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 3/129 (2%)

Query: 2   LGSLFGCTSIWSMVMIAFDRYTVIVKGITAKP-MTIGGALLRLMFVWVHALLWTLFPFFG 60
           L  + G  SI  +  I+ DRY  IV  +  +   T   A + ++ VWV ALL +L P   
Sbjct: 57  LFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLF 116

Query: 61  WNRY-VPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEK 119
                V EGN+T C  D+  +    RSY +      + +PL++I+  Y  I+R +    +
Sbjct: 117 SWLRTVEEGNVTTCLIDFPEESTK-RSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRAR 175

Query: 120 QMREQAKKM 128
               QA+  
Sbjct: 176 SGASQARAK 184

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 263
KOG4219|consensus423 99.91
PHA03235409 DNA packaging protein UL33; Provisional 99.87
PHA02834323 chemokine receptor-like protein; Provisional 99.86
PHA03234338 DNA packaging protein UL33; Provisional 99.85
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.83
PHA02638417 CC chemokine receptor-like protein; Provisional 99.8
KOG4220|consensus 503 99.77
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.76
KOG2087|consensus363 99.57
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 98.5
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 98.32
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 98.28
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 98.16
PHA03234338 DNA packaging protein UL33; Provisional 98.14
KOG4219|consensus 423 97.97
PHA03235 409 DNA packaging protein UL33; Provisional 97.94
PHA02834323 chemokine receptor-like protein; Provisional 97.85
PHA02638417 CC chemokine receptor-like protein; Provisional 97.69
PHA03087335 G protein-coupled chemokine receptor-like protein; 97.26
PF11710201 Git3: G protein-coupled glucose receptor regulatin 97.09
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 97.08
KOG4220|consensus503 96.55
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 95.42
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 95.21
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 95.05
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 95.05
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 94.68
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 92.65
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 91.41
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 91.04
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 87.04
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 85.86
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 85.02
PF13853144 7tm_4: Olfactory receptor 84.83
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 81.64
>KOG4219|consensus Back     alignment and domain information 
Probab=99.91  E-value=8.4e-25  Score=171.89  Aligned_cols=196  Identities=15%  Similarity=0.180  Sum_probs=134.2

Q ss_pred             CccccccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHHhhcccccC----CCcceeccc
Q psy12169          1 MLGSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPE----GNLTACGTD   76 (263)
Q Consensus         1 f~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~----~~~~~C~~~   76 (263)
                      |+..++.++|+++|++||+|||.||.||++.| .+++.+.++++++|++++++++|..+..+.....    .....|...
T Consensus       113 f~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r-~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~  191 (423)
T KOG4219|consen  113 FFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR-PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTA  191 (423)
T ss_pred             ccchhhhhHhHHHHHHHHHHHHHHHhhhcccC-CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEe
Confidence            56778899999999999999999999999976 7899999999999999999999966644332221    113367665


Q ss_pred             ccCC--c-c----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCCCCCCCcccccCcc
Q psy12169         77 YLTK--D-W----HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGN  149 (263)
Q Consensus        77 ~~~~--~-~----~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (263)
                      |+.+  . .    ....|......+.+++|++++..+|..|.+.++..+.. +++..          ..  .+..+..++
T Consensus       192 ~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~-gd~~d----------~~--~~~~kak~K  258 (423)
T KOG4219|consen  192 WPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIP-GDQQD----------RK--HEQLKAKKK  258 (423)
T ss_pred             cccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCc-cchhc----------hh--hHHHHHHHH
Confidence            5443  1 1    11338888889999999999999999999999875311 11100          00  001111222


Q ss_pred             ceeeee---eeeecccchhhHHHHHhHhh--------------hhhhhhHHHHHHHHHHHHHhccHHHHHHHHHhCCCC
Q psy12169        150 LTACGT---DYLTKDWHHRSYLIFYGFFV--------------YFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVA  211 (263)
Q Consensus       150 ~~~~~~---~~~~~~~~p~~~~~~~~~~~--------------~~~P~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~  211 (263)
                      ..+++.   ..+..||+|+....+.....              ...-++.-..||||++|.+. |.+++.++++.+++.
T Consensus       259 ~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~l-N~Rfr~gf~~~fr~c  336 (423)
T KOG4219|consen  259 VVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFL-NKRFRGGFRRAFRWC  336 (423)
T ss_pred             HHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhh-HHHHHHHHhhhhhee
Confidence            333333   33459999986554443211              12223445779999999999 888888888877654

>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4219|consensus Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF13853 7tm_4: Olfactory receptor Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 6e-24
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 2e-13
2z73_A448 Crystal Structure Of Squid Rhodopsin Length = 448 6e-24
2z73_A 448 Crystal Structure Of Squid Rhodopsin Length = 448 2e-13
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 2e-15
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 1e-04
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 2e-15
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 1e-04
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 3e-15
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 1e-04
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 3e-15
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 1e-04
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 3e-15
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 1e-04
2x72_A349 Crystal Structure Of The Constitutively Active E113 3e-15
2x72_A349 Crystal Structure Of The Constitutively Active E113 1e-04
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 2e-05
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 2e-04
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 3e-04
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 2   LGSLFGCTSIWSMVMIAFDRYTVIVKGITA-KPMTIGGALLRLMFVWVHALLWTLFPFFG 60
           +G +FG  SI +M MI+ DRY VI + + A K M+   A + ++FVW+ ++LW + P FG
Sbjct: 113 IGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG 172
Query: 61  WNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQ 120
           W  Y  EG L  C  DY+++D   RS ++      +F P+++I + Y+ IV +VS HEK+
Sbjct: 173 WGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE 232
Query: 121 MREQAKKMNVATLRSGDQSGTSA 143
           M   AK++N   LR   Q+G +A
Sbjct: 233 MAAMAKRLNAKELRKA-QAGANA 254
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 5e-59
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 2e-30
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 1e-52
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 5e-21
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 9e-15
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 3e-14
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 4e-14
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 1e-13
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 1e-13
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 1e-13
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 2e-13
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 8e-13
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 2e-04
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 1e-12
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 3e-12
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 6e-04
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 3e-11
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 1e-10
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 2e-10
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
 Score =  192 bits (490), Expect = 5e-59
 Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 1/140 (0%)

Query: 1   MLGSLFGCTSIWSMVMIAFDRYTVIVKGITA-KPMTIGGALLRLMFVWVHALLWTLFPFF 59
            +G +FG  SI +M MI+ DRY VI + + A K M+   A + ++FVW+ ++LW + P F
Sbjct: 113 FIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIF 172

Query: 60  GWNRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEK 119
           GW  Y  EG L  C  DY+++D   RS ++      +F P+++I + Y+ IV +VS HEK
Sbjct: 173 GWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEK 232

Query: 120 QMREQAKKMNVATLRSGDQS 139
           +M   AK++N   LR     
Sbjct: 233 EMAAMAKRLNAKELRKAQAG 252
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.94
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.89
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.89
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.88
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.88
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.88
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.88
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.88
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.87
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.87
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.86
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 99.86
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.85
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.84
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.84
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 99.83
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.83
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 99.83
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.97
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 98.26
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 98.24
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 98.22
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 98.18
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 98.16
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 98.05
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 98.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 97.98
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 97.87
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 97.82
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 97.72
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 97.59
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 95.4
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 92.31
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 91.5
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 91.5
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 90.93
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 89.43
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 86.84
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.94  E-value=5.2e-26  Score=194.33  Aligned_cols=120  Identities=13%  Similarity=0.174  Sum_probs=96.4

Q ss_pred             ccccccHHHHHHHHHHHHHHhHHhhcCCCcc-cccccchhhhhHHHHHHHHHHHHHhHHhhcccccCC-----Ccceecc
Q psy12169          2 LGSLFGCTSIWSMVMIAFDRYTVIVKGITAK-PMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEG-----NLTACGT   75 (263)
Q Consensus         2 ~~~~~~~~S~~~l~~isidRy~aI~~P~~~~-~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~C~~   75 (263)
                      +..++.++|+++|++||+|||+||++|++++ ..|++++..+++++|++++++++|++++++......     ....|..
T Consensus       116 ~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~  195 (510)
T 4grv_A          116 LRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTP  195 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGGGEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCCcccccc
Confidence            4556788999999999999999999999954 579999999999999999999999999877543322     2234655


Q ss_pred             cccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12169         76 DYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE  123 (263)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~  123 (263)
                      .+.  ......|..+..++.|++|+++|+++|.+|++.++++.+....
T Consensus       196 ~~~--~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~  241 (510)
T 4grv_A          196 IVD--TATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEM  241 (510)
T ss_dssp             CSC--HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHH
T ss_pred             ccc--cchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            442  2345567777888889999999999999999999987655443
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.71
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 97.55
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=6.5e-19  Score=141.22  Aligned_cols=195  Identities=25%  Similarity=0.447  Sum_probs=132.0

Q ss_pred             cccccHHHHHHHHHHHHHHhHHhhcCCCcccccccchhhhhHHHHHHHHHHHHHhHHhhcccccCCCcceecccccCC--
Q psy12169          3 GSLFGCTSIWSMVMIAFDRYTVIVKGITAKPMTIGGALLRLMFVWVHALLWTLFPFFGWNRYVPEGNLTACGTDYLTK--   80 (263)
Q Consensus         3 ~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~--   80 (263)
                      ...+..+|++++++||+|||++|++|++++..++++....++++|.+++++..|+.+++.....+.....|...+..+  
T Consensus       117 ~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
T d1u19a_         117 ATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHE  196 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTTEEECCCSCCCG
T ss_pred             cccceeeecchhhhhhcccceeeeccccccccccccccccceeeehhhhheecccccccceeccCCcccccccccccccc
Confidence            345678999999999999999999999977678888888889999999999999888877766665555665544332  


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCCCCCCCcccccCccceeeee---ee
Q psy12169         81 DWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAYVPEGNLTACGT---DY  157 (263)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  157 (263)
                      ......|.++.....+++|++++.++|.+|.+.++++.++                .+......+++.+.++...   ..
T Consensus       197 ~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~  260 (348)
T d1u19a_         197 ETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ----------------QQESATTQKAEKEVTRMVIIMVIA  260 (348)
T ss_dssp             GGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCS----------------SCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc----------------cchhhhhHHHHhhHhheEEEeehH
Confidence            2344567777778888999999999999999887654221                0000111112333444332   22


Q ss_pred             eecccchhhHHHHHhHhhh---hhh--------hhHHHHHHHHHHHHHhccHHHHHHHHHhCCCCcCC
Q psy12169        158 LTKDWHHRSYLIFYGFFVY---FVP--------LILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLR  214 (263)
Q Consensus       158 ~~~~~~p~~~~~~~~~~~~---~~P--------~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~  214 (263)
                      +..+|.|+...........   ..+        +.....+.||++|... ++++|++..+.++|.+.+
T Consensus       261 f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~-~~~fR~~~~~~l~c~~~~  327 (348)
T d1u19a_         261 FLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMM-NKQFRNCMVTTLCCGKNP  327 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHT-CHHHHHHHHHHHTSSCCC
T ss_pred             HHHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhCCCCCC
Confidence            3378888765544333320   001        1122344699999999 788999998887665433
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure