Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 136
cd01158 373
cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog
4e-27 pfam02771 113
pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,
2e-23 cd01156 376
cd01156, IVD, Isovaleryl-CoA dehydrogenase
2e-11 COG1960 393
COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta
2e-08 PLN02519 404
PLN02519, PLN02519, isovaleryl-CoA dehydrogenase
1e-07 cd01158 373
cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog
2e-07 cd01161 409
cd01161, VLCAD, Very long chain acyl-CoA dehydroge
2e-07 cd01151 386
cd01151, GCD, Glutaryl-CoA dehydrogenase
4e-07 cd01157 378
cd01157, MCAD, Medium chain acyl-CoA dehydrogenase
4e-06 cd01160 372
cd01160, LCAD, Long chain acyl-CoA dehydrogenase
1e-05 TIGR03207 372
TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co
2e-05 cd01162 375
cd01162, IBD, Isobutyryl-CoA dehydrogenase
1e-04 PTZ00461 410
PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;
3e-04 pfam02771 113
pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,
0.002
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases
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Score = 103 bits (258), Expect = 4e-27
Identities = 34/57 (59%), Positives = 45/57 (78%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
M ELGLMG+ +PE+ GG GLD+LAYAIA EE+++ AS VI+SV+NSL P++KF
Sbjct: 39 MAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKF 95
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain
Back Show alignment and domain information
Score = 87.5 bits (218), Expect = 2e-23
Identities = 30/57 (52%), Positives = 44/57 (77%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+GELGL+G+ +PE+ GG GLDYL YA+ EE++R AS G+ +SV++SL P+L+F
Sbjct: 40 LGELGLLGLTIPEEYGGAGLDYLEYALVAEELARADASVGLALSVHSSLVAPPILRF 96
The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase
Back Show alignment and domain information
Score = 59.7 bits (145), Expect = 2e-11
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCG 40
MG+LGL+G+ PE+ GG+G+ YLA+ I EEISR S
Sbjct: 42 MGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA 81
Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]
Back Show alignment and domain information
Score = 51.0 bits (122), Expect = 2e-08
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCAS--CGVIMSVNNSLYLGPLL 55
+ E GL+G+ +PE+ GG GL L A EE++R A + ++ L P +
Sbjct: 48 LAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTI 104
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase
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Score = 49.1 bits (117), Expect = 1e-07
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLK 56
MG+ L G+ PE+ GG GL YL + IA EEISR S G+ +++L + L++
Sbjct: 68 MGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR 123
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases
Back Show alignment and domain information
Score = 48.0 bits (115), Expect = 2e-07
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
K AS VI+SV+NSL PI+KFG
Sbjct: 72 KVDASVAVIVSVHNSLGANPIIKFGTEE 99
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 47.8 bits (114), Expect = 2e-07
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
+ ELGL G++VPE+ GG GL+ YA E + V + + S+ +L F
Sbjct: 65 LKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGMD-LGFSVTLGAHQSIGFKGILLF 120
VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase
Back Show alignment and domain information
Score = 47.0 bits (112), Expect = 4e-07
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKF 57
MGELGL+G + G GL +AY + E+ R + MSV +SL + P+ F
Sbjct: 53 MGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDF 108
Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 44.1 bits (104), Expect = 4e-06
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 3 ELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVN-NSLYLGPLL 55
ELGLM +PED GG GL + TEE++ GC GV ++ NSL P++
Sbjct: 43 ELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCT--GVQTAIEANSLGQMPVI 94
MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 42.9 bits (101), Expect = 1e-05
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISR-GCASCGV 41
GE GL+GV PE+ GG G D L+ A+ EE++R G + G+
Sbjct: 39 AGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGSGPGL 80
LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase
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Score = 42.6 bits (100), Expect = 2e-05
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRG 35
MGE+G +G E+PE+ GG G+ LA + E+I+R
Sbjct: 41 MGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARA 75
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase
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Score = 40.5 bits (95), Expect = 1e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNN 47
ELG G+ + +D+GG+GL L +I E +S GC S +S++N
Sbjct: 42 AELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN 87
Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Score = 39.2 bits (91), Expect = 3e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISR 34
+G+LG+MGV VPE GG G+D +A I E+S+
Sbjct: 77 LGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSK 110
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain
Back Show alignment and domain information
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 109 KGCASCGVIMSVNNSLYLGPILKFGNAA 136
+ AS G+ +SV++SL PIL+FG
Sbjct: 73 RADASVGLALSVHSSLVAPPILRFGTEE 100
The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
136
KOG0139|consensus 398
100.0 KOG0141|consensus 421
100.0 KOG0140|consensus 408
99.97 cd01151 386
GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd
99.97 PLN02519 404
isovaleryl-CoA dehydrogenase
99.96 cd01156 376
IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d
99.96 cd01157 378
MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar
99.96 PRK03354 380
crotonobetainyl-CoA dehydrogenase; Validated
99.96 TIGR03207 372
cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen
99.96 PRK09463 777
fadE acyl-CoA dehydrogenase; Reviewed
99.96 PRK13026 774
acyl-CoA dehydrogenase; Reviewed
99.96 TIGR03203 378
pimD_small pimeloyl-CoA dehydrogenase, small subun
99.96 TIGR03204 395
pimC_large pimeloyl-CoA dehydrogenase, large subun
99.96 cd01160 372
LCAD Long chain acyl-CoA dehydrogenase. LCAD is an
99.96 cd01162 375
IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d
99.96 PRK12341 381
putative acyl-CoA dehydrogenase; Provisional
99.96 cd01161 409
VLCAD Very long chain acyl-CoA dehydrogenase. VLCA
99.96 PTZ00461 410
isovaleryl-CoA dehydrogenase; Provisional
99.96 cd01158 373
SCAD_SBCAD Short chain acyl-CoA dehydrogenases and
99.95 KOG0138|consensus 432
99.95 PLN02526 412
acyl-coenzyme A oxidase
99.95 cd01152 380
ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases
99.95 PTZ00457 520
acyl-CoA dehydrogenase; Provisional
99.95 cd01153 407
ACAD_fadE5 Putative acyl-CoA dehydrogenases simila
99.95 cd01155 394
ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE
99.94 cd01163 377
DszC Dibenzothiophene (DBT) desulfurization enzyme
99.94 PTZ00456 622
acyl-CoA dehydrogenase; Provisional
99.94 COG1960 393
CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
99.94 KOG0137|consensus 634
99.93 PLN02876 822
acyl-CoA dehydrogenase
99.92 PLN02636 686
acyl-coenzyme A oxidase
99.91 PLN02312 680
acyl-CoA oxidase
99.9 cd01154 418
AidB Proteins involved in DNA damage response, sim
99.89 cd01159 370
NcnH Naphthocyclinone hydroxylase. Naphthocyclinon
99.85 KOG1469|consensus 392
99.84 cd01150 610
AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl
99.81 PF02770 52
Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma
99.78 PRK11561 538
isovaleryl CoA dehydrogenase; Provisional
99.77 PTZ00460 646
acyl-CoA dehydrogenase; Provisional
99.74 PLN02443 664
acyl-coenzyme A oxidase
99.7 cd00567 327
ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac
99.67 PF02771 113
Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal
99.6 KOG0135|consensus 661
99.25 KOG0136|consensus 670
98.75 TIGR02309 477
HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy
97.66 PF11794 264
HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter
94.86 PF14749 125
Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal;
94.51 TIGR02310 519
HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy
85.81 COG2368 493
Aromatic ring hydroxylase [Secondary metabolites b
84.0
>KOG0139|consensus
Back Hide alignment and domain information
Probab=100.00 E-value=4.6e-35 Score=218.08 Aligned_cols=127 Identities=38% Similarity=0.468 Sum_probs=120.5
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
+.|+|++++.+|++|||.|.++..++.++||+++.|+|.++++.+||.+...+|..||+++||+.|+| . +.++.++
T Consensus 77 ~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P---~-~~~d~vg 152 (398)
T KOG0139|consen 77 LFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLP---K-LTGDLVG 152 (398)
T ss_pred HhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhhcc---h-hhccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999998888 5 4778899
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
+||+|||++|||...++ |+|++++|.|+|||.|+||||+.+||+++|+|+.
T Consensus 153 sfAlSEpgaGSDa~A~~----T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~ 203 (398)
T KOG0139|consen 153 SFALSEPGAGSDAFALK----TTAKKDGDDYVINGSKMWITNAGEADWFLVFANA 203 (398)
T ss_pred eeeecCCCCCcchHHhh----hhHhhcCCeEEEecceeeecCCcccceEEEEEec
Confidence 99999999999999886 8999999999999999999999999999999975
>KOG0141|consensus
Back Show alignment and domain information
Probab=100.00 E-value=1.3e-33 Score=208.27 Aligned_cols=128 Identities=20% Similarity=0.312 Sum_probs=122.6
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|.+.|++|++.|++|||.|.++.+.++++||++|..++.++.+..|..+++..|.+.|++||+++|+| ++++|+-++
T Consensus 83 lG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylP---kl~sGe~iG 159 (421)
T KOG0141|consen 83 LGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLP---KLISGEHIG 159 (421)
T ss_pred hhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhh---hhhcccccc
Confidence 46789999999999999999999999999999999988999999987789999999999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||++|||+.++. +.|++++++|+|||.|.||||++.||.++|+|+.
T Consensus 160 alAMsEp~AGSDvv~mK----~~Aek~g~~yiLNGsK~witNG~~advliVyAkT 210 (421)
T KOG0141|consen 160 ALAMSEPGAGSDVVSMK----LKAEKKGDDYILNGSKFWITNGPDADVLIVYAKT 210 (421)
T ss_pred eeeecCCCCCCccceee----eeceecCCcEEecCcEEEEecCCCCcEEEEEEec
Confidence 99999999999999885 8999999999999999999999999999999986
>KOG0140|consensus
Back Show alignment and domain information
Probab=99.97 E-value=1.3e-31 Score=197.43 Aligned_cols=126 Identities=20% Similarity=0.209 Sum_probs=121.3
Q ss_pred cccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeEE
Q psy1218 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGV 81 (136)
Q Consensus 2 ~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~ 81 (136)
.++||....+|++|||.|++.++.+++.|+|+.+|.++......|+ ++.++|..+|+++||++||+ +++....+++
T Consensus 69 ~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg---~l~~~p~~as 144 (408)
T KOG0140|consen 69 HELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLG---RLAEEPKVAS 144 (408)
T ss_pred HHcccCcccCccccCCCCchhHHHHHHHHHHHccchhHHHHHhccc-hhhhhehhcCcHHHHHhhhh---hhhcchhhhh
Confidence 4789999999999999999999999999999999999999999887 89999999999999999999 9999999999
Q ss_pred EEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 82 VESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 82 ~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
+++|||++|||+.++. |+|++.+|.|+|||.|.||||+++++|+.|+||.
T Consensus 145 YcvTEPgAGSDvagik----Tka~KkGDeYiiNGsKawItg~G~anwyfVlaRt 194 (408)
T KOG0140|consen 145 YCVTEPGAGSDVAGIK----TKAEKKGDEYIINGSKAWITGAGHANWYFVLART 194 (408)
T ss_pred hhccCCCCCcchhhhh----hhhhhcCCEEEEcCceeeeecCCccceEEEEEec
Confidence 9999999999999985 8999999999999999999999999999999985
>cd01151 GCD Glutaryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.97 E-value=1.1e-29 Score=196.60 Aligned_cols=127 Identities=24% Similarity=0.311 Sum_probs=116.4
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|.+.||+++ +|++|||.|+++.+...++|++++.|.++++++.+|.......|..+++++|+++|++ ++++|+.++
T Consensus 53 l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~---~l~~G~~~~ 128 (386)
T cd01151 53 MGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLP---KLASGELIG 128 (386)
T ss_pred HHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHH---HHhCCCeEE
Confidence 468999999 9999999999999999999999999999887776665455567889999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||+.|||+..+. |++++++|||+|||+|.|||++..||+++|+|+.
T Consensus 129 ~~a~tEp~~Gsd~~~~~----t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv~ar~ 179 (386)
T cd01151 129 CFGLTEPNHGSDPGGME----TRARKDGGGYKLNGSKTWITNSPIADVFVVWARN 179 (386)
T ss_pred EEEecCCCCCCChhhCe----EEEEEECCEEEEEEEEEeecCCCcCCEEEEEEEE
Confidence 99999999999998775 7899999999999999999999999999999975
Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
>PLN02519 isovaleryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.96 E-value=2e-29 Score=196.36 Aligned_cols=128 Identities=25% Similarity=0.347 Sum_probs=117.7
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|++.||+++.+|++|||.|+++.+.+.++|++++.|+++++.+.+|.......|..+++++||++|+| ++++|+.++
T Consensus 68 l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~---~l~~G~~~~ 144 (404)
T PLN02519 68 MGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLP---KLISGEHVG 144 (404)
T ss_pred HHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHH---HHhCCCeeE
Confidence 46899999999999999999999999999999999999998877775445667889999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||++|||...+. |++++++|||+|||+|.|+||+.+||+++|+|+.
T Consensus 145 ~~a~sEp~~gsd~~~~~----t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v~a~~ 195 (404)
T PLN02519 145 ALAMSEPNSGSDVVSMK----CKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAKT 195 (404)
T ss_pred EEEecCCCcCCCcccce----EEEEEeCCEEEEEeEEEeecCCCcCCEEEEEEEe
Confidence 99999999999987764 7889999999999999999999999999999874
>cd01156 IVD Isovaleryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.96 E-value=2.4e-29 Score=193.78 Aligned_cols=128 Identities=24% Similarity=0.360 Sum_probs=117.2
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|++.||+++.+|++|||.|+++.+++.+.|++++.|+++++.+.+|.......|..+++++|+++|++ ++++|++++
T Consensus 42 l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~---~l~~G~~~~ 118 (376)
T cd01156 42 MGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLP---KLISGEHIG 118 (376)
T ss_pred HHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHH---HHhCCCeeE
Confidence 46889999999999999999999999999999999999988776664345567889999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||.+|||+..+. |++++++|||+|||+|.||||+.+||+++|+|+.
T Consensus 119 ~~a~sEp~~gs~~~~~~----t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 169 (376)
T cd01156 119 ALAMSEPNAGSDVVSMK----LRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKT 169 (376)
T ss_pred EEEecCCCCCCChhhCe----EEEEEeCCEEEEEEEEEEecCCCcCCEEEEEEEe
Confidence 99999999999988764 7899999999999999999999999999999874
Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.96 E-value=2.8e-29 Score=193.61 Aligned_cols=127 Identities=22% Similarity=0.227 Sum_probs=114.6
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|++.||+++.+|++|||.|+++.+++.++|++++.|+++++.+..+. .....+..+++++||++|++ ++++|+.+.
T Consensus 41 l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~~~~G~~~~ 116 (378)
T cd01157 41 AWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIEANS-LGQMPVIISGNDEQKKKYLG---RMTEEPLMC 116 (378)
T ss_pred HHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhhh-hhHHHHHHhCCHHHHHHHHH---HHhCCCeeE
Confidence 46899999999999999999999999999999999998877665543 45556777899999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||+.|||...+. |++++++|+|+|||+|.||||+.+||+++|+|+.
T Consensus 117 ~~a~tEp~~gs~~~~~~----t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~ 167 (378)
T cd01157 117 AYCVTEPGAGSDVAGIK----TKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 167 (378)
T ss_pred EEEecCCCCCCchhcCe----EEEEEcCCEEEEeeEEEeecCCccCCEEEEEEEe
Confidence 99999999999988764 7889999999999999999999999999999974
MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Back Show alignment and domain information
Probab=99.96 E-value=3.1e-29 Score=193.80 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=114.6
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|++.||+++.+|++|||.|+++.+++.+.|++++.|+++++++.++. ....+..+++++|+++|+| ++++|+.+.
T Consensus 46 l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~---~~~~g~~~~ 120 (380)
T PRK03354 46 LADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMA---FRGTGKQMW 120 (380)
T ss_pred HHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHH---HHhCCCeeE
Confidence 46899999999999999999999999999999999999887666542 3567888999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||+.|||...+. |++++++|+|+|||+|.|||++.+|||++|+|+.
T Consensus 121 ~~a~tE~~~gs~~~~~~----t~a~~~~~g~~lnG~K~fis~~~~ad~~~v~a~~ 171 (380)
T PRK03354 121 NSAITEPGAGSDVGSLK----TTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARD 171 (380)
T ss_pred EEEecCCCCCCchhhCE----EEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEc
Confidence 99999999999987764 7888899999999999999999999999999874
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.96 E-value=3.8e-29 Score=192.64 Aligned_cols=127 Identities=20% Similarity=0.224 Sum_probs=115.6
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|++.||+++.+|++|||.|+++.+++.+.|++++.|.+++++...+. .....+..+++++|+++|+| ++++|+.+.
T Consensus 41 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~---~~~~G~~~~ 116 (372)
T TIGR03207 41 MGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMSYVNLLAS-LNGQILAQHARPEIAKPWLG---QLIAGEALF 116 (372)
T ss_pred HHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHHHHHHhhh-HHHHHHHHhCCHHHHHHHHH---HHhCCCeeE
Confidence 46899999999999999999999999999999999999887654433 45667888999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||++|||+.++. |++++++|+|+|||+|.||||+.+||+++|+|+.
T Consensus 117 ~~a~tEp~~Gsd~~~~~----t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv~a~~ 167 (372)
T TIGR03207 117 AIALTEPRGGSDAARLR----LRAERDGDDYVLNGEKTSISAADQADAAVVFART 167 (372)
T ss_pred EEEecCCCCCcChhhCE----EEEEEeCCEEEEEEEEEEEcCCCcCCEEEEEEEc
Confidence 99999999999998875 7899999999999999999999999999999974
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Back Show alignment and domain information
Probab=99.96 E-value=3.3e-29 Score=206.59 Aligned_cols=132 Identities=12% Similarity=0.029 Sum_probs=114.6
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhh-HHHHhcCCCHHHHHhhcCCcccccccCee
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLY-LGPLLKFDFRPMLLKLVFHGTLVCHEVVL 79 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~~~~~~~g~~~ 79 (136)
|+++||+++.+|++|||.|++..+++.+.|++++.|.+++..+.+++.+. ..+|..||+++||++||| ++++|+.+
T Consensus 118 L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp---~La~Ge~i 194 (777)
T PRK09463 118 IKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLP---RLARGEEI 194 (777)
T ss_pred HHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHH---HHhCCCce
Confidence 46899999999999999999999999999999999988877666665444 357889999999999999 99999999
Q ss_pred EEEEecCCCCCCCcccCccccc-eeeeeCCC---eEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 80 GVVESSEVCRGYNNFEKHYQHR-TRCPLGPK---GCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 80 ~~~a~tEp~~Gsd~~~~~~~~~-t~a~~~~~---g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
.|+++|||++|||+.++.++.. ++++++++ +|+|||+|.||||++.||+++|++++
T Consensus 195 ~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~ 254 (777)
T PRK09463 195 PCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKL 254 (777)
T ss_pred eEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEe
Confidence 9999999999999988764221 34455665 69999999999999999999998874
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Back Show alignment and domain information
Probab=99.96 E-value=5.5e-29 Score=204.91 Aligned_cols=131 Identities=13% Similarity=0.035 Sum_probs=113.6
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhh-HHHHhcCCCHHHHHhhcCCcccccccCee
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLY-LGPLLKFDFRPMLLKLVFHGTLVCHEVVL 79 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~~~~~~~g~~~ 79 (136)
|+++||+++.+|++|||.|++..+++.++|++++.+.+.++.+.+++.+. ..+|..+|+++||++||| ++++|+.+
T Consensus 117 Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP---~LAsGe~i 193 (774)
T PRK13026 117 LKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLP---RLADGTEI 193 (774)
T ss_pred HHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhH---HHhCCCeE
Confidence 46899999999999999999999999999999998888877666665444 457899999999999999 99999999
Q ss_pred EEEEecCCCCCCCcccCccccc-eeeeeCCC---eEEEeeeEEEeeCCCCCCeEEEEee
Q psy1218 80 GVVESSEVCRGYNNFEKHYQHR-TRCPLGPK---GCASCGVIMSVNNSLYLGPILKFGN 134 (136)
Q Consensus 80 ~~~a~tEp~~Gsd~~~~~~~~~-t~a~~~~~---g~~l~G~k~~vs~~~~a~~~lv~a~ 134 (136)
.|+++|||++|||+.++.++.. |+++++++ ||+|||+|.||||++.||+++|.++
T Consensus 194 ~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar 252 (774)
T PRK13026 194 PCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFK 252 (774)
T ss_pred EEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEE
Confidence 9999999999999988864322 34455666 6999999999999999999988765
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit
Back Show alignment and domain information
Probab=99.96 E-value=4.6e-29 Score=192.96 Aligned_cols=126 Identities=15% Similarity=0.059 Sum_probs=111.8
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.|++..+.+.++|++++.+.+.+.. .... .....+..+++++||++||| ++++|+.+.
T Consensus 46 l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~~~~~~-~~~~-~~~~~l~~~g~~~qk~~~L~---~l~~G~~~~ 120 (378)
T TIGR03203 46 LAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKALVLEPYL-ATVV-IGGGFLRHAGSAAQKAAHLP---GIIDGSKTF 120 (378)
T ss_pred HHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcccchHHH-HHHH-HHHHHHHHcCCHHHHHHHHH---HHhCCChhh
Confidence 468999999999999999999999999999999987654432 2221 34567889999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||++|||...+. |++++++|+|+|||+|.||+|+..||+++|+|+.
T Consensus 121 a~a~tEp~~gsd~~~~~----t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~ar~ 171 (378)
T TIGR03203 121 AFAQLEKNSRYDLGDVS----TTAKKTGDGWVIDGEKFVVLNGETADTLIVTART 171 (378)
T ss_pred eeeecCCCCCCCcccce----EEEEEcCCEEEEEeEEEEecCCccCCEEEEEEec
Confidence 99999999999988875 7899999999999999999999999999999974
Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit
Back Show alignment and domain information
Probab=99.96 E-value=4.9e-29 Score=193.76 Aligned_cols=126 Identities=14% Similarity=0.035 Sum_probs=113.4
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.|+++.+++.+.|++++.+.+.++...++ .....|..+++++||++|+| ++++|+.+.
T Consensus 49 l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~---~i~~G~~~~ 123 (395)
T TIGR03204 49 LNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLP---RIANVDDWW 123 (395)
T ss_pred HHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHH---HHhCCchhe
Confidence 4689999999999999999999999999999999998887654433 34457888999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||++|||+..+. |++++++++|+|||+|.||+|+.+||+++|+|+.
T Consensus 124 ~~a~tEp~~gsd~~~~~----t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv~a~~ 174 (395)
T TIGR03204 124 CQGFSEPGSGSDLASLK----TKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRT 174 (395)
T ss_pred EeEecCCCCCCChhhce----EEEEEcCCEEEEeeEEEeecCCccCCeEEEEEEe
Confidence 99999999999988764 7888999999999999999999999999999873
Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
>cd01160 LCAD Long chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.96 E-value=1.1e-28 Score=189.75 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=113.9
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.|+++.+++.+.|++++.+.+ ++.+.+|.......+..+++++|+++|+| ++.+|+.++
T Consensus 39 l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~l~---~~~~g~~~~ 114 (372)
T cd01160 39 AGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGLSLHTDIVSPYITRAGSPEQKERVLP---QMVAGKKIG 114 (372)
T ss_pred HHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhCCHHHHHHHHH---HHhCCCeeE
Confidence 46899999999999999999999999999999996544 66666664345667889999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||++|||+..+. |+++++++||+|||+|.||||+.+||+++|+|+.
T Consensus 115 ~~a~tE~~~gsd~~~~~----t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v~a~~ 165 (372)
T cd01160 115 AIAMTEPGAGSDLQGIR----TTARKDGDHYVLNGSKTFITNGMLADVVIVVART 165 (372)
T ss_pred EEEecCCCCCCchhhCe----EEEEEeCCEEEEeeEEEEecCCCccCEEEEEEEe
Confidence 99999999999987764 7889999999999999999999999999999874
LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
>cd01162 IBD Isobutyryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.96 E-value=1.3e-28 Score=189.86 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=117.4
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.|+++.+.+.+.|++++.|+++++++.+|. .....+..+++++|+++|+| ++.+|+.++
T Consensus 41 l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~l~~g~~~~ 116 (375)
T cd01162 41 AAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLP---DLCTMEKLA 116 (375)
T ss_pred HHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHH---HHhCCCcee
Confidence 46899999999999999999999999999999999999987777775 56778888999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||++|||...+. |++++++|+|+|||+|.||||+.+||+++|+|+.
T Consensus 117 ~~a~tE~~~gsd~~~~~----t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v~a~~ 167 (375)
T cd01162 117 SYCLTEPGSGSDAAALR----TRAVREGDHYVLNGSKAFISGAGDSDVYVVMART 167 (375)
T ss_pred EEEecCCCCCCChhhCE----EEEEEeCCEEEEEEEEEEecCCCCCCEEEEEEEe
Confidence 99999999999998764 7899999999999999999999999999999874
Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=3.1e-28 Score=188.22 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=110.8
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccc-cccCee
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLV-CHEVVL 79 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~-~~g~~~ 79 (136)
|+++||+++.+|++|||.|+++.+++.++|++++.|.+. +++. + ......|..+++++||++|++ ++ .+|+.+
T Consensus 46 l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~-~~~~-~-~~~~~~l~~~g~~~q~~~~l~---~~~~~g~~~ 119 (381)
T PRK12341 46 LADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGAPA-FLIT-N-GQCIHSMRRFGSAEQLRKTAE---STLETGDPA 119 (381)
T ss_pred HHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcChhH-HHHh-h-hhhHHHHHHhCCHHHHHHHhH---HHhhCCCeE
Confidence 468999999999999999999999999999999998873 3332 2 245566888999999999999 98 599988
Q ss_pred EEEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 80 GVVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 80 ~~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
.++++|||+.|||+..+. |++++++|+|+|||+|.||||+.+||+++|+|+.
T Consensus 120 ~~~a~tEp~~gsd~~~~~----t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~~ 171 (381)
T PRK12341 120 YALALTEPGAGSDNNSAT----TTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARD 171 (381)
T ss_pred EEEEecCCCCCCchhhCe----eEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEEc
Confidence 999999999999998775 7888889999999999999999999999999974
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.96 E-value=3.4e-28 Score=189.60 Aligned_cols=127 Identities=22% Similarity=0.269 Sum_probs=113.6
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.|+++.++..++|++++ |+++++.+.+|.......+..+++++|+++|++ ++++|+.++
T Consensus 65 l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~---~l~~G~~~~ 140 (409)
T cd01161 65 LKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLP---KLASGEWIA 140 (409)
T ss_pred HHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhH---HHhCCCeeE
Confidence 4689999999999999999999999999999999 999888777765344456788999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeee--CCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPL--GPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~--~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||+.|||...+. |++++ ++++|+|||+|.||||+.+||+++|.|+.
T Consensus 141 ~~a~tEp~~Gs~~~~~~----t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~ 193 (409)
T cd01161 141 AFALTEPSSGSDAASIR----TTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKT 193 (409)
T ss_pred EEEecCCCCCCChhhCe----eEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEc
Confidence 99999999999988764 67877 45579999999999999999999999874
VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=4e-28 Score=189.36 Aligned_cols=128 Identities=21% Similarity=0.263 Sum_probs=114.2
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|++.||+++.+|++|||.|+++.+...+.|++++.|+++++.+..|.......+..+++++||++|+| ++++|+.+.
T Consensus 77 l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~---~~~~G~~~~ 153 (410)
T PTZ00461 77 LGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLP---KVLTGEHVG 153 (410)
T ss_pred HHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHH---HHhCCCeeE
Confidence 46899999999999999999999999999999999988777666554345567788999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCC-CeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGP-KGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~-~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||++|||+..+. |++++++ |+|+|||+|.||||+.+||+++|+|+.
T Consensus 154 ~~a~tEp~~Gsd~~~~~----t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv~a~~ 205 (410)
T PTZ00461 154 AMGMSEPGAGTDVLGMR----TTAKKDSNGNYVLNGSKIWITNGTVADVFLIYAKV 205 (410)
T ss_pred EEEecCCCCCCChHHCe----EEEEEcCCCeEEEEeEEEeECCCccCCEEEEEEEe
Confidence 99999999999998764 7888875 579999999999999999999999874
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases
Back Show alignment and domain information
Probab=99.95 E-value=6e-28 Score=185.59 Aligned_cols=128 Identities=34% Similarity=0.442 Sum_probs=117.9
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.|.++.+++.+.|++++.|++++++..+|.......+..+++++|+++|++ ++.+|+.++
T Consensus 39 l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~---~~~~G~~~~ 115 (373)
T cd01158 39 MAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLP---PLATGEKIG 115 (373)
T ss_pred HHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHH---HHhCCCeEE
Confidence 46899999999999999999999999999999999999999888876456678889999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||.+|||+..+. +++++++|||+|||+|.|+||+.+||+++|.|+.
T Consensus 116 ~~a~se~~~gs~~~~~~----~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv~a~~ 166 (373)
T cd01158 116 AFALSEPGAGSDAAALK----TTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVT 166 (373)
T ss_pred EEEecCCCCCCCHHHCE----eEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEc
Confidence 99999999999987664 7888999999999999999999999999999874
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
>KOG0138|consensus
Back Show alignment and domain information
Probab=99.95 E-value=5.6e-28 Score=178.16 Aligned_cols=127 Identities=20% Similarity=0.322 Sum_probs=119.0
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|.++|++|.++ +-||-.|++...+.++..|+.|.|.+..-.+++|.++...+|..||+++||++|+| .+++|+.++
T Consensus 95 mGsmGvlG~ti-kGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlP---slA~g~~ig 170 (432)
T KOG0138|consen 95 MGSMGVLGPTI-KGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLP---SLAKGKLIG 170 (432)
T ss_pred hhccccccCcc-cCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhh---hhhcCceee
Confidence 45778888888 78999999999999999999999999888889998899999999999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCe--EEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKG--CASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g--~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
||++|||++|||++.+. |+|+.+.++ |.|||+|.||+|++.||+++|+||-
T Consensus 171 cfgLTEPn~GSdpsgme----T~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~ 223 (432)
T KOG0138|consen 171 CFGLTEPNHGSDPSGME----TRATYDESNKTYKLNGSKTWITNSPMADLFVVWARC 223 (432)
T ss_pred EEeccCCCCCCCccccc----ceeEEccCCceEEECCeeeeecCCcccceEEEEEec
Confidence 99999999999999987 789888776 9999999999999999999999984
>PLN02526 acyl-coenzyme A oxidase
Back Show alignment and domain information
Probab=99.95 E-value=1.2e-27 Score=186.78 Aligned_cols=127 Identities=23% Similarity=0.239 Sum_probs=115.4
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+ ++|||.|+++.+++.++|++++.|++.+.++.+|.......|..+++++|+++|++ ++++|+.+.
T Consensus 69 l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~---~l~~G~~~~ 144 (412)
T PLN02526 69 LGSLGIAGGTI-KGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLP---SLAQLDTVA 144 (412)
T ss_pred HHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHH---HHhCCCeEE
Confidence 46899999999 99999999999999999999999998877666665455667899999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||+.|||+..+. |++++++|||+|||+|.||+|+.+||+++|+++.
T Consensus 145 ~~a~tEp~~Gsd~~~~~----t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~ 195 (412)
T PLN02526 145 CWALTEPDYGSDASSLN----TTATKVEGGWILNGQKRWIGNSTFADVLVIFARN 195 (412)
T ss_pred EEEecCCCCCCChhhCe----eEEEEECCEEEEEEEEeeecCCCccCEEEEEEEe
Confidence 99999999999988764 7899999999999999999999999999999874
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26
Back Show alignment and domain information
Probab=99.95 E-value=6.8e-28 Score=186.26 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=114.0
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHH-HHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCee
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVI-MSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVL 79 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~ 79 (136)
|+++||+++.+|++|||.|.++.+++.+.|++++.|.+.++. ..++ .....|..+++++|+++|++ ++++|+.+
T Consensus 44 l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~--~~~~~l~~~g~~~~~~~~l~---~~~~g~~~ 118 (380)
T cd01152 44 LAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGID--LAGPTILAYGTDEQKRRFLP---PILSGEEI 118 (380)
T ss_pred HHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCCcccchhhHH--HHHHHHHHhCCHHHHHHHhH---HHhCCchh
Confidence 468999999999999999999999999999999999988875 3433 34567899999999999999 99999999
Q ss_pred EEEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 80 GVVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 80 ~~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
.++++|||+.|||+..+. |++++++++|+|||+|.|||++.++|+++|+|+.
T Consensus 119 ~~~a~tE~~~gsd~~~~~----t~a~~~~~g~~L~G~K~~it~~~~ad~~lv~a~~ 170 (380)
T cd01152 119 WCQGFSEPGAGSDLAGLR----TRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRT 170 (380)
T ss_pred heeecCCCCCCcchhhCe----eeEEEcCCeEEEecEEEEEcCccccCEEEEEEEe
Confidence 999999999999987764 7888999999999999999999999999999974
Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=2.5e-27 Score=188.76 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=110.4
Q ss_pred Cccc-CCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCee
Q psy1218 1 MGEL-GLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVL 79 (136)
Q Consensus 1 l~~~-G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~ 79 (136)
++++ ||+++.+|++|||.|+++.+++.+.|++++.+.+.++.+..|..+....|..+++++||++||| ++++|+.+
T Consensus 59 ~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp---~lasGe~i 135 (520)
T PTZ00457 59 DKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLT---AMSDGTIM 135 (520)
T ss_pred hHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH---HHhCCCcE
Confidence 4678 9999999999999999999999999999998877765544554455678888999999999999 99999999
Q ss_pred EEEEecCCCCCCCcccCccccceeeeeC-CCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 80 GVVESSEVCRGYNNFEKHYQHRTRCPLG-PKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 80 ~~~a~tEp~~Gsd~~~~~~~~~t~a~~~-~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
.+++++| +.|||+..+. |+++++ +|+|+|||+|.|+ |+..||+++|+|+.
T Consensus 136 ~A~AltE-~aGSD~a~i~----TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art 186 (520)
T PTZ00457 136 MGWATEE-GCGSDISMNT----TKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKT 186 (520)
T ss_pred EEEEeCC-CCCCccccce----eEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeec
Confidence 9999988 8999988775 788875 5579999999965 89999999999974
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5
Back Show alignment and domain information
Probab=99.95 E-value=3.5e-27 Score=183.89 Aligned_cols=126 Identities=21% Similarity=0.149 Sum_probs=112.2
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.|.++.++..+.|+++++|.++++.+.++. ....+..+++++|+++|++ ++++|+.+.
T Consensus 45 l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~---~i~~G~~~~ 119 (407)
T cd01153 45 FAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQG--AAATLLAHGTEAQREKWIP---RLAEGEWTG 119 (407)
T ss_pred HHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHhH--HHHHHHHhCCHHHHHHHHH---HHhCCCeeE
Confidence 46899999999999999999999999999999999999888776553 4567888899999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeC-CCeEEEeeeEEEeeCCCCC----CeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLG-PKGCASCGVIMSVNNSLYL----GPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~-~~g~~l~G~k~~vs~~~~a----~~~lv~a~~ 135 (136)
++++|||++|||+..+. |+++++ +|+|+|||+|.|+||+.+| ++++|+|+.
T Consensus 120 ~~a~tEp~~gsd~~~~~----t~a~~~~~ggy~l~G~K~~is~~~~a~~~~~~~~v~a~~ 175 (407)
T cd01153 120 TMCLTEPDAGSDLGALR----TKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARS 175 (407)
T ss_pred EEEecCCCCCCCcccce----EEEEECCCCcEEEeeEEEEEeCCCcccccccEEEEEEeC
Confidence 99999999999988764 788887 5789999999999999887 577888864
Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2
Back Show alignment and domain information
Probab=99.94 E-value=3.6e-27 Score=183.07 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=107.4
Q ss_pred cccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-chhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCA-SCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 2 ~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
+++||+++.+|++|||.|+++.+++.++|++++.|. +.++....+.......|..+++++|+++|+| ++++|+.++
T Consensus 51 ~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~---~l~~G~~~~ 127 (394)
T cd01155 51 KAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLE---PLLDGKIRS 127 (394)
T ss_pred HhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHH---HHhCCCeEE
Confidence 589999999999999999999999999999999863 3333222221123457899999999999999 999999999
Q ss_pred EEEecCCC-CCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCC--CCeEEEEeec
Q psy1218 81 VVESSEVC-RGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLY--LGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~-~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~--a~~~lv~a~~ 135 (136)
++++|||+ .|||...+. |++++++|||+|||+|.||||+.+ +|+++|+|+.
T Consensus 128 ~~a~tE~~~~gsd~~~~~----t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v~a~~ 181 (394)
T cd01155 128 AFAMTEPDVASSDATNIE----CSIERDGDDYVINGRKWWSSGAGDPRCKIAIVMGRT 181 (394)
T ss_pred EEEeCCCCCCCCchhhCE----EEEEEECCEEEEEEEEEEEcCCCCCCCCEEEEEEEe
Confidence 99999997 679987764 788999999999999999999965 7899999864
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C
Back Show alignment and domain information
Probab=99.94 E-value=1.2e-26 Score=179.05 Aligned_cols=125 Identities=14% Similarity=0.040 Sum_probs=109.6
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|++.||+++.+|++|||.|+++.+++.+.|++++.|+++++++.+|. .....+..+++++|+++|++ ++.+|+.+
T Consensus 31 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~---~~~~g~~~- 105 (377)
T cd01163 31 LRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFG---RVLNGWIF- 105 (377)
T ss_pred HHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHH---HHhCCCeE-
Confidence 46899999999999999999999999999999999999998877775 44578888999999999999 99999865
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
+.++|||++++ ..... +++++++|||+|||+|.|||++.+||+++|+|+.
T Consensus 106 ~~a~tE~~~~~-~~~~~----~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~ 155 (377)
T cd01163 106 GNAVSERGSVR-PGTFL----TATVRDGGGYVLNGKKFYSTGALFSDWVTVSALD 155 (377)
T ss_pred EEeecCCCCCC-CCCce----EEEEecCCEEEEeceEEeecCCccceEEEEEEEc
Confidence 56999998775 44332 5667788999999999999999999999999874
DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.94 E-value=8.3e-27 Score=189.58 Aligned_cols=127 Identities=12% Similarity=0.049 Sum_probs=106.8
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
++|.||+++.+|++|||.|++......+.|.+++.+.++++....+. .....|..+++++||++||| ++++|++++
T Consensus 108 l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp---~l~sGe~~~ 183 (622)
T PTZ00456 108 LKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLT---KLVSGEWSG 183 (622)
T ss_pred HHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHH---HHhcCChhh
Confidence 46899999999999999999987555556666777776655444332 34578999999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCC-eEEEeeeEEEeeCCCCC----CeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPK-GCASCGVIMSVNNSLYL----GPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~-g~~l~G~k~~vs~~~~a----~~~lv~a~~ 135 (136)
++++|||++|||+..+. |++++++| +|+|||+|.|||+++++ ++++|+|++
T Consensus 184 t~alTEp~aGSD~~~l~----T~A~~~gdG~y~L~G~K~fIt~g~~~~~~n~~~lVlAr~ 239 (622)
T PTZ00456 184 TMCLTEPQCGTDLGQVK----TKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLARL 239 (622)
T ss_pred hhhccCCccCCCcccCe----eEEEECCCCcEEEeeEEEEecCCchhhccCcEEEEEEEe
Confidence 99999999999998875 78888876 59999999999999874 688999985
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Back Show alignment and domain information
Probab=99.94 E-value=1.3e-26 Score=179.53 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=112.3
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhh---hhHHHHhcCCCHHHHHhhcCCcccccccC
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNS---LYLGPLLKFDFRPMLLKLVFHGTLVCHEV 77 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~---~~~~~l~~~g~~~~~~~~l~~~~~~~~g~ 77 (136)
+.+.|++++.+|++|||.+.+..+...+.|++++.+++.++....+.. .....+..+++++|+++|+| ++.+|+
T Consensus 48 l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~---~~~~G~ 124 (393)
T COG1960 48 LAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLP---RLASGE 124 (393)
T ss_pred HHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhch---hhhCCc
Confidence 358999999999999999999999999999999999877665554431 22336778999999999999 999999
Q ss_pred eeEEEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 78 VLGVVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 78 ~~~~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
.+.|+++|||++|||+..+.+ |++++++|+|+|||+|.||||+++||+++|+|+.
T Consensus 125 ~~~~~~~tEp~~Gsd~~~~~~---t~a~~~~g~~~lnG~K~~is~~~~ad~~~v~Ar~ 179 (393)
T COG1960 125 LIGAFALTEPGAGSDLASLRT---TAAVRDDGDYVLNGQKIWISNAPVADWLLVLART 179 (393)
T ss_pred hhheeeccCCCCCcchhcCce---eEEEecCCCEEEEeEEEEEcCCCCCCEEEEEEEc
Confidence 999999999999999988752 6777766669999999999999999999999985
>KOG0137|consensus
Back Show alignment and domain information
Probab=99.93 E-value=1.1e-26 Score=182.54 Aligned_cols=128 Identities=22% Similarity=0.270 Sum_probs=118.2
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++|++++.||++|+|.|+...+++.+.|.++-+|.++++.+..|.....-.|..+|+++||++||| ++++|+.+.
T Consensus 118 l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~---~LaSg~~~~ 194 (634)
T KOG0137|consen 118 LRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLP---KLASGKLIA 194 (634)
T ss_pred HHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHH---hhhcCCccc
Confidence 47899999999999999999999999999999999999999888887677778999999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeee--CCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPL--GPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~--~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
+|++|||..|||...+. |+++. +++.|+|||.|.||+|+..||+++|||+.
T Consensus 195 A~altE~s~Gsdaas~~----~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt 247 (634)
T KOG0137|consen 195 AFALTEPSSGSDAASGR----TTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQT 247 (634)
T ss_pred eEEEecCCCCcccccce----eeeeecCCCCeEEEcCeeEEEecCccceeeeeeecc
Confidence 99999999999999874 66665 45669999999999999999999999986
>PLN02876 acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.92 E-value=1.7e-24 Score=181.10 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=107.8
Q ss_pred cccCCCcCCCCCC------------------------CCCCCCCHHHHHHHHHHHHhcCCchhHH-HHHhhhhhHHHHhc
Q psy1218 2 GELGLMGVEVPED------------------------LGGTGLDYLAYAIATEEISRGCASCGVI-MSVNNSLYLGPLLK 56 (136)
Q Consensus 2 ~~~G~~~l~vP~~------------------------~GG~g~~~~~~~~~~e~la~~~~~~~~~-~~~~~~~~~~~l~~ 56 (136)
+++||+++.+|++ |||.|++..+++.++|++++.+.+...+ ...+.......|..
T Consensus 452 ~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~ 531 (822)
T PLN02876 452 KKEGLWNLWIPLDSAARARKLLFEDNKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLR 531 (822)
T ss_pred HHcCcccCCCCchhhhhhhhcccccccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHH
Confidence 3799999999995 9999999999999999999986543222 11221123457889
Q ss_pred CCCHHHHHhhcCCcccccccCeeEEEEecCCC-CCCCcccCccccceeeeeCCCeEEEeeeEEEeeCC--CCCCeEEEEe
Q psy1218 57 FDFRPMLLKLVFHGTLVCHEVVLGVVESSEVC-RGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNS--LYLGPILKFG 133 (136)
Q Consensus 57 ~g~~~~~~~~l~~~~~~~~g~~~~~~a~tEp~-~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~--~~a~~~lv~a 133 (136)
+++++||++|++ ++++|+.++|+++|||+ +|||+.++. |++++++|+|+|||+|.|||++ ..||+++|+|
T Consensus 532 ~gt~eqk~~~L~---~l~~G~~~~~~a~tEp~~~gsd~~~~~----t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~a 604 (822)
T PLN02876 532 YGNKEQQLEWLI---PLLEGKIRSGFAMTEPQVASSDATNIE----CSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMG 604 (822)
T ss_pred hCCHHHHHHHHH---HHhCCCceeEEEecCCCccCcccccce----EEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEE
Confidence 999999999999 99999999999999997 789988775 7899999999999999999999 5799999998
Q ss_pred ec
Q psy1218 134 NA 135 (136)
Q Consensus 134 ~~ 135 (136)
+.
T Consensus 605 r~ 606 (822)
T PLN02876 605 KT 606 (822)
T ss_pred ec
Confidence 74
>PLN02636 acyl-coenzyme A oxidase
Back Show alignment and domain information
Probab=99.91 E-value=1.1e-24 Score=178.72 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=110.6
Q ss_pred cccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeEE
Q psy1218 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGV 81 (136)
Q Consensus 2 ~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~ 81 (136)
++.|++++.+|++ ++.++..+.|++++.|.+++..+.+|..++...|..+|+++|+++||| ++.+|+.++|
T Consensus 106 ~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~---~~~~ge~ig~ 176 (686)
T PLN02636 106 REAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFD---GIDNLDYPGC 176 (686)
T ss_pred HhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHH---HHhCCChhhh
Confidence 5789999999976 889999999999999988877777776677889999999999999999 9999999999
Q ss_pred EEecCCCCCCCcccCccccceeeeeC--CCeEEEe-----eeEEEeeCCCC-CCeEEEEeec
Q psy1218 82 VESSEVCRGYNNFEKHYQHRTRCPLG--PKGCASC-----GVIMSVNNSLY-LGPILKFGNA 135 (136)
Q Consensus 82 ~a~tEp~~Gsd~~~~~~~~~t~a~~~--~~g~~l~-----G~k~~vs~~~~-a~~~lv~a~~ 135 (136)
+++|||++|||+.+++ |+|+++ +|+|+|| |+|+||+|++. ||+++|+|++
T Consensus 177 fA~TEpghGSdv~~le----TtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl 234 (686)
T PLN02636 177 FAMTELHHGSNVQGLQ----TTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARL 234 (686)
T ss_pred hhccCCCcccCcccCe----eEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEe
Confidence 9999999999999986 899988 6889999 99999999976 9999999986
>PLN02312 acyl-CoA oxidase
Back Show alignment and domain information
Probab=99.90 E-value=9.5e-24 Score=173.04 Aligned_cols=125 Identities=16% Similarity=0.029 Sum_probs=111.0
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
+.+.|+++..+|++ |.+ ++...+.+.|++++.+.+++..+.+|..++...|..+|+++|+++|+| ++.+|+.++
T Consensus 114 l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~---~~~~ge~ig 187 (680)
T PLN02312 114 LLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLK---DTEDYVVKG 187 (680)
T ss_pred HHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHH---HHhCCCeee
Confidence 35789999999995 333 688899999999999888877777776677889999999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeC--CCeEEEe-----eeEEEeeCC-CCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLG--PKGCASC-----GVIMSVNNS-LYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~--~~g~~l~-----G~k~~vs~~-~~a~~~lv~a~~ 135 (136)
|+++|||++|||+.+++ |+|+++ +++|+|| |+|+||+|+ ..||+++|+|++
T Consensus 188 ~fA~TEpghGSdv~~le----TtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl 246 (680)
T PLN02312 188 CFAMTELGHGSNVRGIE----TVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQL 246 (680)
T ss_pred EeeecCCCcCcchhcCe----EEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEE
Confidence 99999999999999986 789887 4789999 799999999 789999999985
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product
Back Show alignment and domain information
Probab=99.89 E-value=5.7e-23 Score=160.86 Aligned_cols=121 Identities=12% Similarity=-0.001 Sum_probs=100.4
Q ss_pred cccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccC----
Q psy1218 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEV---- 77 (136)
Q Consensus 2 ~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~---- 77 (136)
.+.||+++ +|+++|+.| ......+.+.++..+........++. .++..|..+++++|+ +|+| ++++|+
T Consensus 75 ~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~g~~~~~-~~l~---~l~~g~~~~~ 146 (418)
T cd01154 75 IEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPLTMTD-AAVYALRKYGPEELK-QYLP---GLLSDRYKTG 146 (418)
T ss_pred HHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCcHHHHH-HHHHHHHHhCcHHHH-HHHH---HHhCCCcccc
Confidence 57899999 788887655 34445567777777666655555665 578899999988865 6999 999997
Q ss_pred eeEEEEecCCCCCCCcccCccccceeeeeC-CCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 78 VLGVVESSEVCRGYNNFEKHYQHRTRCPLG-PKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 78 ~~~~~a~tEp~~Gsd~~~~~~~~~t~a~~~-~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
.++|+++|||++|||+..+. |+|+++ +|+|+|||+|+|+|++ .||+++|+|+.
T Consensus 147 ~~~~~~~TEp~~GSD~~~~~----T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~Art 200 (418)
T cd01154 147 LLGGTWMTEKQGGSDLGANE----TTAERSGGGVYRLNGHKWFASAP-LADAALVLARP 200 (418)
T ss_pred hhheeeecCCCcccchhhCe----EEEEECCCCcEEEEEEEEEecCc-ccCEEEEEEEC
Confidence 89999999999999999875 899999 8899999999999999 99999999985
AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
>cd01159 NcnH Naphthocyclinone hydroxylase
Back Show alignment and domain information
Probab=99.85 E-value=3.7e-21 Score=148.20 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=93.0
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|++.||+++.+|++|||.|+++.+.+.++|++++.|++++++...++ .....+..+++++|++.|++ .. .+ .+
T Consensus 31 l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~-~~-~~- 103 (370)
T cd01159 31 LREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFPPEAQEEVWGD---GP-DT-LL- 103 (370)
T ss_pred HHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCCHHHHHHHhCC---CC-Cc-eE-
Confidence 46899999999999999999999999999999999999988766554 45567778899999998887 42 11 11
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
+ |+ ... .|++++++|+|+|||+|.|||++.++|+++|+|+.
T Consensus 104 ~--------g~--~~~----~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~ 144 (370)
T cd01159 104 A--------GS--YAP----GGRAERVDGGYRVSGTWPFASGCDHADWILVGAIV 144 (370)
T ss_pred E--------ee--ecC----CceeEEeCCeEEEeccccCccCCCcCceeEeeeEC
Confidence 1 11 111 26788889999999999999999999999999985
Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
>KOG1469|consensus
Back Show alignment and domain information
Probab=99.84 E-value=1.3e-21 Score=142.86 Aligned_cols=125 Identities=11% Similarity=0.060 Sum_probs=104.6
Q ss_pred ccCCCcCCCCCCC--CCCCCCHHHHHHHHHHHHhcCCchhHHHHH--hhhhhHHHHhcCCCHHHHHhhcCCcccccccCe
Q psy1218 3 ELGLMGVEVPEDL--GGTGLDYLAYAIATEEISRGCASCGVIMSV--NNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVV 78 (136)
Q Consensus 3 ~~G~~~l~vP~~~--GG~g~~~~~~~~~~e~la~~~~~~~~~~~~--~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~ 78 (136)
..|++.+++|..- =|.|++.++++.++|.+++.- -.+-++.+ ..+....+|.+||++||+.+||- +++.|+.
T Consensus 38 ~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~-~APeVfNC~APDTGNMEvl~rYGseeQks~WL~---PLLeG~i 113 (392)
T KOG1469|consen 38 VEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSF-FAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLI---PLLEGNI 113 (392)
T ss_pred hcchHHhhhHHHHHhhccCccchhHHHHHHHhcccc-ccchhccCCCCCCCCeeehhhhCCHHHHhhHhH---HHhcCCc
Confidence 5688999998753 267999999999999999953 22333443 23456679999999999999999 9999999
Q ss_pred eEEEEecCCC-CCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCC--CCeEEEEeec
Q psy1218 79 LGVVESSEVC-RGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLY--LGPILKFGNA 135 (136)
Q Consensus 79 ~~~~a~tEp~-~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~--a~~~lv~a~~ 135 (136)
..||++|||+ +.||..+++ +..+++++.|+|||+|+|+||+.+ |.+.+++.+.
T Consensus 114 rScFaMTEP~VASSDATNIe----~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt 169 (392)
T KOG1469|consen 114 RSCFAMTEPDVASSDATNIE----CSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKT 169 (392)
T ss_pred eeeEeecCCcccccccccce----EEEEEcCCEEEEecceeeecCCCCCceEEEEEeccc
Confidence 9999999999 688999986 788999999999999999999965 8888887764
>cd01150 AXO Peroxisomal acyl-CoA oxidase
Back Show alignment and domain information
Probab=99.81 E-value=5.2e-20 Score=150.00 Aligned_cols=108 Identities=12% Similarity=0.014 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeEEEEecCCCCCCCcccCcccc
Q psy1218 21 DYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGVVESSEVCRGYNNFEKHYQH 100 (136)
Q Consensus 21 ~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~a~tEp~~Gsd~~~~~~~~ 100 (136)
++.+...+.|++++.|.+.+..+.+|..++...|..+|+++|+++|+| ++.+|+.++|+++|||++|||+.+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~---~~~~g~~ig~~a~TE~ghGSdv~~le--- 153 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQ---GANNLEIIGCFAQTELGHGSNLQGLE--- 153 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHH---HHhccChheeeeccccCcCcCcccce---
Confidence 677888999999999888776666776577889999999999999999 99999999999999999999999886
Q ss_pred ceeeeeCC--CeEEEe-----eeEEEeeCCCC-CCeEEEEeec
Q psy1218 101 RTRCPLGP--KGCASC-----GVIMSVNNSLY-LGPILKFGNA 135 (136)
Q Consensus 101 ~t~a~~~~--~g~~l~-----G~k~~vs~~~~-a~~~lv~a~~ 135 (136)
|+|++++ ++|+|| |+|+|++|++. |++++|+|++
T Consensus 154 -TtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl 195 (610)
T cd01150 154 -TTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQL 195 (610)
T ss_pred -eEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEEEEEe
Confidence 8999887 899999 99999999865 9999999985
Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1
Back Show alignment and domain information
Probab=99.78 E-value=8.9e-19 Score=99.56 Aligned_cols=51 Identities=18% Similarity=0.054 Sum_probs=45.6
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
|+++|||++|+|+..++ |++++++++|+|||+|.||+++..||+++|+||.
T Consensus 1 ~~a~tE~~~g~d~~~~~----t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVE----TTARRDGDGYVLNGEKRFVSNAPDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-S----SEEEEETTEEEEEEEEEEEETTTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCE----EEeecccceEEEeeEEEEECCcCccCEEEEEEEE
Confidence 68999999999998885 8999999999999999999999999999999986
3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.77 E-value=2.1e-18 Score=138.38 Aligned_cols=121 Identities=13% Similarity=0.025 Sum_probs=87.9
Q ss_pred cccCCCcCCCCCCCCCCCCCHHHHHHHHHHH-HhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccC---
Q psy1218 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEI-SRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEV--- 77 (136)
Q Consensus 2 ~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~l-a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~--- 77 (136)
.+.||.++..+++++ .+ ..-...+.+-+ +...+...+..++. ..+..+..+++++|+++|+| ++++|+
T Consensus 96 ~~~g~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp---~l~sg~~~~ 167 (538)
T PRK11561 96 CANRVHNLAWEEDAR-SG--AFVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLT---PLLSDRYDS 167 (538)
T ss_pred HHcCCccCCCCCccC-ch--HHHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHH---HHhCCCccc
Confidence 367888888887775 22 22112222222 33333333333332 45566777788999999999 999987
Q ss_pred ----------eeEEEEecCCCCCCCcccCccccceeeee-CCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 78 ----------VLGVVESSEVCRGYNNFEKHYQHRTRCPL-GPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 78 ----------~~~~~a~tEp~~Gsd~~~~~~~~~t~a~~-~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
.+.++++|||++|||+..+. |+|++ ++|+|+|||+|+||| ++.||+++|+|+.
T Consensus 168 ~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~----T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt 231 (538)
T PRK11561 168 HLLPGGQKRGLLIGMGMTEKQGGSDVLSNT----TRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQA 231 (538)
T ss_pred ccccchhhhhheeEEEecCCCCCCchhhCe----eEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEE
Confidence 46799999999999998875 78988 467899999999999 6899999999985
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.74 E-value=2.7e-18 Score=140.52 Aligned_cols=87 Identities=9% Similarity=0.062 Sum_probs=77.0
Q ss_pred HHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeEEEEecCCCCCCCcccCccccceeeeeC--CCeEEEe-----
Q psy1218 42 IMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGVVESSEVCRGYNNFEKHYQHRTRCPLG--PKGCASC----- 114 (136)
Q Consensus 42 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~a~tEp~~Gsd~~~~~~~~~t~a~~~--~~g~~l~----- 114 (136)
.+.+|..++...|..+|+++|+++||| ++.+|+.++|+++|||++|||+.+++ |+|+++ +|+|+||
T Consensus 94 ~~~vh~~~~~~~I~~~GT~eQk~~~Lp---~~~~ge~ig~~A~TEpghGSdv~~le----TtAt~d~~~defvLntPt~~ 166 (646)
T PTZ00460 94 ISTVHFAMVIPAFQVLGTDEQINLWMP---SLLNFEIVGCYAQTELGHGSDVQNLE----TTATYDKQTNEFVIHTPSVE 166 (646)
T ss_pred eEEeeHhhHHHHHHHhCCHHHHHHHHH---HHhCCChheeeeecCCCccCCcccce----EEEEEcCCCCEEEECCCCCC
Confidence 344555466778999999999999999 99999999999999999999999986 889885 5789998
Q ss_pred eeEEEeeC-CCCCCeEEEEeec
Q psy1218 115 GVIMSVNN-SLYLGPILKFGNA 135 (136)
Q Consensus 115 G~k~~vs~-~~~a~~~lv~a~~ 135 (136)
|+|.|++| +..||+++|+|++
T Consensus 167 g~K~wi~~~g~~A~~~vV~Arl 188 (646)
T PTZ00460 167 AVKFWPGELGFLCNFALVYAKL 188 (646)
T ss_pred eEEEccCCCCCCCCEEEEEEEE
Confidence 99999998 6889999999985
>PLN02443 acyl-coenzyme A oxidase
Back Show alignment and domain information
Probab=99.70 E-value=2.1e-17 Score=135.64 Aligned_cols=86 Identities=8% Similarity=0.022 Sum_probs=76.5
Q ss_pred HHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeEEEEecCCCCCCCcccCccccceeeeeC--CCeEEEe-----e
Q psy1218 43 MSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGVVESSEVCRGYNNFEKHYQHRTRCPLG--PKGCASC-----G 115 (136)
Q Consensus 43 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~a~tEp~~Gsd~~~~~~~~~t~a~~~--~~g~~l~-----G 115 (136)
+.+|..++...|..+|+++|+++|+| ++.+|+.++|+++|||++|||+.+++ |+|+.+ +++|+|| |
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~---~~~~g~iig~fA~TE~ghGSdv~~le----TtAt~d~~~~efvIntP~~~g 171 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLP---LAYKMQIIGCYAQTELGHGSNVQGLE----TTATFDPKTDEFVIHSPTLTS 171 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHH---HHhCCChheEEEecCCCcccchhhCe----EEEEEeCCCCEEEECCCCCCE
Confidence 34454466778999999999999999 99999999999999999999999886 789887 6789998 9
Q ss_pred eEEEeeCC-CCCCeEEEEeec
Q psy1218 116 VIMSVNNS-LYLGPILKFGNA 135 (136)
Q Consensus 116 ~k~~vs~~-~~a~~~lv~a~~ 135 (136)
+|+|++|+ ..|++++|+|++
T Consensus 172 ~K~wig~~~~~A~~~vV~Arl 192 (664)
T PLN02443 172 SKWWPGGLGKVSTHAVVYARL 192 (664)
T ss_pred EEEeecCCcccCCEEEEEEEE
Confidence 99999997 689999999985
>cd00567 ACAD Acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.67 E-value=2e-16 Score=119.46 Aligned_cols=79 Identities=10% Similarity=0.016 Sum_probs=72.9
Q ss_pred hHHHHhcCCCHHHHHhhcCCcccccccCeeEEEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeE
Q psy1218 50 YLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGVVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPI 129 (136)
Q Consensus 50 ~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~ 129 (136)
+...|..+++++|+++|++ ++.+|+.++++++|||++|||...+. +++++++|||+|||+|.|+|++.+||++
T Consensus 44 ~~~~l~~~g~~~~~~~~l~---~~~~g~~~~~~a~sE~~~gs~~~~~~----~~a~~~~~g~~l~G~k~~~s~~~~ad~~ 116 (327)
T cd00567 44 GAALLLAYGTEEQKERYLP---PLASGEAIAAFALTEPGAGSDLAGIR----TTARKDGDGYVLNGRKIFISNGGDADLF 116 (327)
T ss_pred chHHHHHhCCHHHHHHHHH---HHhCCCceEEEEecCCCCCCchhhCE----eEEEEeCCEEEEEEEEEEecCCccCCEE
Confidence 5667888999999999999 99999999999999999999888764 7888999999999999999999999999
Q ss_pred EEEeec
Q psy1218 130 LKFGNA 135 (136)
Q Consensus 130 lv~a~~ 135 (136)
+|+|+.
T Consensus 117 lv~a~~ 122 (327)
T cd00567 117 IVLART 122 (327)
T ss_pred EEEEEe
Confidence 999874
Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1
Back Show alignment and domain information
Probab=99.60 E-value=3.8e-16 Score=101.36 Aligned_cols=74 Identities=36% Similarity=0.507 Sum_probs=67.2
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccC
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEV 77 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~ 77 (136)
|++.||+++.+|++|||.++++.+++.+.+++++.|.++++.+.+|+.+.+..|.++++++||++|+| ++++|+
T Consensus 40 l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp---~~~~Ge 113 (113)
T PF02771_consen 40 LGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLP---RLASGE 113 (113)
T ss_dssp HHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHH---HHHTTS
T ss_pred HHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhH---HHhCCC
Confidence 36899999999999999999999999999999999999998888876566689999999999999999 999986
3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
>KOG0135|consensus
Back Show alignment and domain information
Probab=99.25 E-value=2e-11 Score=96.73 Aligned_cols=106 Identities=12% Similarity=0.021 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeEEEEecCCCCCCCcccCccccc
Q psy1218 22 YLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGVVESSEVCRGYNNFEKHYQHR 101 (136)
Q Consensus 22 ~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~a~tEp~~Gsd~~~~~~~~~ 101 (136)
..-...+.|.++.+|.|++.-+.+|..++...+..+|++.+++ |++ ++-.-+.++|||+||-++|||...++
T Consensus 104 ~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~---~~~n~ev~gcfamTEl~HGSNt~~I~---- 175 (661)
T KOG0135|consen 104 ELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQ---KTENYEVKGCFAMTELGHGSNTKGIQ---- 175 (661)
T ss_pred HHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHh---hhhcceeeeeEEEeeecCCcccccee----
Confidence 3457789999999999999999999888999999999999998 999 99999999999999999999999986
Q ss_pred eeeeeC--CCeEEEe-----eeEEEeeCCCC-CCeEEEEeec
Q psy1218 102 TRCPLG--PKGCASC-----GVIMSVNNSLY-LGPILKFGNA 135 (136)
Q Consensus 102 t~a~~~--~~g~~l~-----G~k~~vs~~~~-a~~~lv~a~~ 135 (136)
|+++.| .+.|+|| -.|.||.|+++ |.+.+|+|++
T Consensus 176 TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L 217 (661)
T KOG0135|consen 176 TTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQL 217 (661)
T ss_pred eeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEe
Confidence 788877 6789998 67999999855 9999999986
>KOG0136|consensus
Back Show alignment and domain information
Probab=98.75 E-value=1.6e-08 Score=81.68 Aligned_cols=90 Identities=10% Similarity=0.013 Sum_probs=77.0
Q ss_pred hhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeEEEEecCCCCCCCcccCccccceeeeeCC--CeEEEe--
Q psy1218 39 CGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGVVESSEVCRGYNNFEKHYQHRTRCPLGP--KGCASC-- 114 (136)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~a~tEp~~Gsd~~~~~~~~~t~a~~~~--~g~~l~-- 114 (136)
.+..+..|..++...|...+++||.++|++ +....+.++|+|.||-++|+++..++ |+|+.+. +.|+||
T Consensus 107 ~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~---~a~~~~IiGtYAQTElGHGTnl~~LE----T~AtyD~~T~eFVl~TP 179 (670)
T KOG0136|consen 107 EGHPLALHYGMFVPTLKGQGTDEQQEKWLS---RALNMEIIGTYAQTELGHGTNLRGLE----TTATYDPKTQEFVLNTP 179 (670)
T ss_pred CCchhhhhhhhhhhHhhcCCCHHHHHHHHH---hcccceEEEeehhhhhcccccccccc----eeeeecCCcceEEecCC
Confidence 344455666678899999999999999999 99999999999999999999999997 7887765 579987
Q ss_pred ---eeEEEeeCCCC-CCeEEEEeec
Q psy1218 115 ---GVIMSVNNSLY-LGPILKFGNA 135 (136)
Q Consensus 115 ---G~k~~vs~~~~-a~~~lv~a~~ 135 (136)
..|+|..+.++ +.+.+|+|++
T Consensus 180 t~ta~KWWPGgLG~ssnhAvV~AqL 204 (670)
T KOG0136|consen 180 TLTATKWWPGGLGKSSNHAVVVAQL 204 (670)
T ss_pred CcceecccCCccccccchheeeeee
Confidence 88999988766 7888999875
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
Back Show alignment and domain information
Probab=97.66 E-value=4e-05 Score=61.53 Aligned_cols=67 Identities=10% Similarity=-0.045 Sum_probs=48.8
Q ss_pred HHhhcCCcccccccCeeEEEEecCCCC-CCC----cccCccccce-eeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 63 LLKLVFHGTLVCHEVVLGVVESSEVCR-GYN----NFEKHYQHRT-RCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 63 ~~~~l~~~~~~~~g~~~~~~a~tEp~~-Gsd----~~~~~~~~~t-~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
.++|+. .+.+.++..+-+++.|.. -|- ..+.. .-. ..+++++||+|||.|.|+|++ .||+++|+++.
T Consensus 129 ~~~y~~---~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~--~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~ 201 (477)
T TIGR02309 129 VRNYYE---YLRDNDLALTHALTNPQVNRAKPPSEQPDPY--IALGVVEQTDKGVIVRGARMTATFP-IADEILIFPST 201 (477)
T ss_pred HHHHHH---HHHHhCceeeccccCCCCCCCCChhhcCCCC--cceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccC
Confidence 445666 889999999999998862 111 11111 011 346688999999999999997 99999999874
This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []
Back Show alignment and domain information
Probab=94.86 E-value=0.17 Score=37.81 Aligned_cols=70 Identities=13% Similarity=0.025 Sum_probs=43.4
Q ss_pred HHHHhhcCCcccccccCeeEEEEecCCCC-CCCcccC-cccccee-eeeCCCeEEEeeeEEEeeCCCCCCeEEEEe
Q psy1218 61 PMLLKLVFHGTLVCHEVVLGVVESSEVCR-GYNNFEK-HYQHRTR-CPLGPKGCASCGVIMSVNNSLYLGPILKFG 133 (136)
Q Consensus 61 ~~~~~~l~~~~~~~~g~~~~~~a~tEp~~-Gsd~~~~-~~~~~t~-a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a 133 (136)
+-.++|.. .+.+.++..+.+++.|.. -|-.... ....-.+ .++.++|-+|+|-|...|+++.+|.++|+-
T Consensus 123 ~n~~~y~~---~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p 195 (264)
T PF11794_consen 123 ENIRRYYE---YVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFP 195 (264)
T ss_dssp HHHHHHHH---HHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--
T ss_pred HHHHHHHH---HHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEee
Confidence 33456666 888999999999999862 1111110 0001123 356789999999999999999999999863
The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A
Back Show alignment and domain information
Probab=94.51 E-value=0.013 Score=38.56 Aligned_cols=31 Identities=3% Similarity=-0.020 Sum_probs=24.9
Q ss_pred HHhhhhhHHHHhcCCCHHHHHhhcCCcccccccC
Q psy1218 44 SVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEV 77 (136)
Q Consensus 44 ~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~ 77 (136)
.+|..++...|...||+||+++|+| +..+.+
T Consensus 93 ~lH~~mFip~I~~qgt~EQ~~~Wlp---~a~~~~ 123 (125)
T PF14749_consen 93 GLHFGMFIPTIMGQGTEEQQAKWLP---KAENYE 123 (125)
T ss_dssp HHHHHTHHHHHHHHS-HHHHHHHHH---HHHTTS
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHH---HHHCCc
Confidence 4566678999999999999999999 776554
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
Back Show alignment and domain information
Probab=85.81 E-value=0.78 Score=37.58 Aligned_cols=66 Identities=6% Similarity=-0.167 Sum_probs=46.4
Q ss_pred HHhhcCCcccccccCeeEEEEecCCCC-CCCcccCccccce-eeeeCCCeEEEeeeEEEeeCCCCCCeEEE
Q psy1218 63 LLKLVFHGTLVCHEVVLGVVESSEVCR-GYNNFEKHYQHRT-RCPLGPKGCASCGVIMSVNNSLYLGPILK 131 (136)
Q Consensus 63 ~~~~l~~~~~~~~g~~~~~~a~tEp~~-Gsd~~~~~~~~~t-~a~~~~~g~~l~G~k~~vs~~~~a~~~lv 131 (136)
.++|+. .+.+.++..+-+++.|.. -|-...-....-. ..+++++|-+|+|-|...|++..+|.++|
T Consensus 138 ~~~yy~---~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V 205 (519)
T TIGR02310 138 ARNWYK---RIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFI 205 (519)
T ss_pred HHHHHH---HHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceee
Confidence 445666 889999999999998862 1111000000112 34567899999999999999999999988
This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=84.00 E-value=1.7 Score=35.25 Aligned_cols=69 Identities=10% Similarity=-0.076 Sum_probs=48.5
Q ss_pred HHHHhhcCCcccccccCeeEEEEecCCCC-CCC-cccCcc-cccee-eeeCCCeEEEeeeEEEeeCCCCCCeEEEE
Q psy1218 61 PMLLKLVFHGTLVCHEVVLGVVESSEVCR-GYN-NFEKHY-QHRTR-CPLGPKGCASCGVIMSVNNSLYLGPILKF 132 (136)
Q Consensus 61 ~~~~~~l~~~~~~~~g~~~~~~a~tEp~~-Gsd-~~~~~~-~~~t~-a~~~~~g~~l~G~k~~vs~~~~a~~~lv~ 132 (136)
+-..+|++ .+.+.+...+-|+|.|.. .|- +..... ..-.+ .++.++|-+++|-|..+|++..+|.++|+
T Consensus 131 ~n~~~~~k---~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~ 203 (493)
T COG2368 131 ENAREYYK---EVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVL 203 (493)
T ss_pred HHHHHHHH---HHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEe
Confidence 34456777 999999999999999862 111 111100 01123 35578999999999999999999999987
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 136
d1ivha2 236
Isovaleryl-coa dehydrogenase, NM domains {Human (H
100.0 d2c12a2 259
Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55
100.0 d2d29a2 233
Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI
100.0 d3mdea2 231
Medium chain acyl-CoA dehydrogenase, NM domains {P
100.0 d1ukwa2 227
Medium chain acyl-CoA dehydrogenase, NM domains {T
99.98 d1r2ja2 210
Protein FkbI {Streptomyces hygroscopicus [TaxId: 1
99.98 d1jqia2 231
Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus
99.98 d1rx0a2 231
Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)
99.97 d1siqa2 236
Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie
99.96 d1buca2 232
Butyryl-CoA dehydrogenase, NM domains {Megasphaera
99.94 d2ddha3 267
Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {
99.83 d1w07a3 271
Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale
99.81 d1u8va2 275
4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
99.51
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=201.71 Aligned_cols=127 Identities=20% Similarity=0.327 Sum_probs=119.8
Q ss_pred cccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeEE
Q psy1218 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGV 81 (136)
Q Consensus 2 ~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~ 81 (136)
+++||+++.+|+++||.|.++.+.+.+.|++++.|+++++.+.++.......|.++++++||++|+| ++++|+.+++
T Consensus 51 ~~~G~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~---~~~~G~~~~~ 127 (236)
T d1ivha2 51 GNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLP---KLISGEYIGA 127 (236)
T ss_dssp HHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHH---HHHHTSSCEE
T ss_pred HHhhhccccccccccccCcccchhhhhhhhhhhhhhccceeeeehhhhhHHHHHHhCCHHHHHHHHH---HHhCCCeEEE
Confidence 5789999999999999999999999999999999999999888776567888999999999999999 9999999999
Q ss_pred EEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 82 VESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 82 ~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
+++|||++|||+.++. |+|++++|+|+|||+|.||||+..||+++|+|+.
T Consensus 128 ~a~tEp~~gsd~~~~~----t~A~~~~~g~~lnG~K~~vs~~~~a~~~~v~a~~ 177 (236)
T d1ivha2 128 LAMSEPNAGSDVVSMK----LKAEKKGNHYILNGNKFWITNGPDADVLIVYAKT 177 (236)
T ss_dssp EECCBTTBSSSGGGCC----CEEEECSSEEEEEEEEEEEETGGGCSEEEEEEES
T ss_pred EEecCCCCCCccccCe----EEEEEECCEEEEEEEEEEEeCCcccccccccccc
Confidence 9999999999998875 7999999999999999999999999999999984
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]
Probab=100.00 E-value=1e-32 Score=200.90 Aligned_cols=131 Identities=19% Similarity=0.068 Sum_probs=116.7
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccc--cCe
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCH--EVV 78 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~--g~~ 78 (136)
|+++||+++.+|++|||.|+++.+++.+.||+++.|+++++.+.++. +....+..+++++||++|++ ++++ |+.
T Consensus 51 ~~~~G~~~~~vPee~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~~-~~~~~i~~~g~~eq~~~~l~---~~~~~~g~~ 126 (259)
T d2c12a2 51 AVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLK---PFISGEGEP 126 (259)
T ss_dssp HHHTTTTGGGSBGGGTCCBCCHHHHHHHHHHHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTG---GGGSSCSCC
T ss_pred HHHcCCCCcCCChHHhhccchhhhhhhhhhhcccccccccccccccc-chHHHHHHhhhccccccccc---cccccceee
Confidence 35789999999999999999999999999999999999998888775 78888999999999999999 9986 788
Q ss_pred eEEEEecCCCCCCCcccCcc-ccceeeeeCCCeEEEeeeEEEeeCCC-----CCCeEEEEeec
Q psy1218 79 LGVVESSEVCRGYNNFEKHY-QHRTRCPLGPKGCASCGVIMSVNNSL-----YLGPILKFGNA 135 (136)
Q Consensus 79 ~~~~a~tEp~~Gsd~~~~~~-~~~t~a~~~~~g~~l~G~k~~vs~~~-----~a~~~lv~a~~ 135 (136)
++|+++|||++|||+..... ..+|+|++++++|+|||+|.||||+. .||+++|+|+.
T Consensus 127 ~~a~a~TEp~~Gsd~~~~~~~~~~t~a~~~g~~~vlnG~K~~vt~a~~~~~~~ad~~~v~ar~ 189 (259)
T d2c12a2 127 LASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRV 189 (259)
T ss_dssp CEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEEEEEEEEECCTTTTTTTSSCCSEEEEEEEE
T ss_pred eeeccccCCccccccccccccccccccccccchhccceeeeeecCCcccccccceEEEEEEEe
Confidence 99999999999999864321 23589999999999999999999984 58889999975
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.1e-33 Score=198.45 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=120.7
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.+++..+++.+.|++++.+.+.++.+.+|.......+..+++++||++|+| ++++|+.++
T Consensus 46 l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~---~l~~G~~~~ 122 (233)
T d2d29a2 46 LAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLP---KLASGEALG 122 (233)
T ss_dssp HHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHH---HHHTSSSCE
T ss_pred HHHhccccccccccccccccchhhhccccccccccccccccccccccccchHHHHHhChHHHHHhhCc---cccCCCEEE
Confidence 46899999999999999999999999999999999999999888876567778999999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
|+++|||++|||+..+. |+|++++|+|+|||+|.||||+.+||+++|+|+.
T Consensus 123 ~~a~tEp~~gsd~~~~~----t~a~~~~~~~~lnG~K~~vs~~~~a~~~~v~a~~ 173 (233)
T d2d29a2 123 AWGLTEPGSGSDAAALK----TKAEKVEGGWRLNGTKQFITQGSVAGVYVVMART 173 (233)
T ss_dssp EEECCBTTBSSSGGGCC----CEEEEETTEEEEEEEEEEEETTTTCSEEEEEEEC
T ss_pred EEEecCCCCCCccccee----EEEEEECCEEEEecceeccccccccccccccccc
Confidence 99999999999999885 7999999999999999999999999999999985
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=5.6e-33 Score=197.99 Aligned_cols=127 Identities=22% Similarity=0.228 Sum_probs=119.2
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.|.+..+.+.+.|++++.+.+.++....+. .....|..+++++||++|+| ++++|+.++
T Consensus 46 l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~---~l~~g~~~~ 121 (231)
T d3mdea2 46 AWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLG---RMTEEPLMC 121 (231)
T ss_dssp HHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHH---HHTTSCCEE
T ss_pred HHHhhhccccccccccCccccccccccchhhhccccccccccccccc-ccchhhhhcCcccccccccc---hhcCCceEE
Confidence 35789999999999999999999999999999999999888887765 67788999999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
|+++|||++|||+.+++ |+|++++|+|+|||+|.||||+.++|+++|+|+.
T Consensus 122 ~~a~tEp~~Gsd~~~~~----t~a~~~~~g~~lnG~K~~vt~~~~a~~~~~~a~t 172 (231)
T d3mdea2 122 AYCVTEPGAGSDVAGIK----TKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 172 (231)
T ss_dssp EEECCBTTBSSCGGGCC----CEEEEETTEEEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEEecCCCCCCCccCCE----EEEEEECCEEEEEEEEEEeCCchhccccceeccc
Confidence 99999999999999875 8999999999999999999999999999999975
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=2.1e-32 Score=195.06 Aligned_cols=127 Identities=22% Similarity=0.265 Sum_probs=118.5
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.|.++.+++.+.|++++.+.+.+.+...+. .+...|..+++++||++|++ ++++|+.++
T Consensus 45 l~~~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~~~~~~~~~~~~~~~-~~~~~i~~~g~~~qk~~~l~---~~~~g~~~~ 120 (227)
T d1ukwa2 45 LHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIPMASD-LGITPVLLAGTEEQKERFLR---PLTEKPALA 120 (227)
T ss_dssp HHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHG---GGTSSSCEE
T ss_pred HHhhhhhhhccccccCcccccccccccchhhhccccccccccccccc-cchhhhhccCCHHHHHHhcc---ccccccccc
Confidence 46899999999999999999999999999999999988887777664 67788999999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||++|||+..++ |+|++++|+|+|||+|.||||+..||+++|+|+.
T Consensus 121 ~~a~tE~~~gsd~~~~~----t~a~~~~~g~~lnG~K~~vs~~~~Ad~~~v~a~~ 171 (227)
T d1ukwa2 121 AFALSEPGNGSDAAALK----TRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATV 171 (227)
T ss_dssp EEECCBTTBSSCGGGCC----CEEEEETTEEEEEEEEEEEETTTTEEEEEEEEES
T ss_pred cccccCCCcCcCCcCce----EEEEEECCEEEEEeEEeccCccccchhhcccccc
Confidence 99999999999998875 7999999999999999999999999999999975
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]
Probab=99.98 E-value=1.5e-32 Score=194.46 Aligned_cols=126 Identities=20% Similarity=0.201 Sum_probs=116.6
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.|+++.+++.++|++++.|.++++++..|. ....+|..+++++||++|+| ++++|+ +.
T Consensus 31 l~~~Gl~~~~iP~e~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~-~~~~~l~~~gs~~qk~~~l~---~~~~g~-~~ 105 (210)
T d1r2ja2 31 LGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAAWTVQRLGDAGQRATFLK---ELTSGK-LA 105 (210)
T ss_dssp HHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHH---HTTCC--CE
T ss_pred HHHcCCCcccCChhHccccccHHHHhhhhcccccccccccccccccc-ccchhhhhcccccccccccc---cccccc-cc
Confidence 46899999999999999999999999999999999999998888876 67889999999999999999 999987 56
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||+.|||...++ |++++++|+|+|||+|.||||+.+||+++|+|+.
T Consensus 106 ~~~~te~~~gs~~~~~~----t~a~~~~~g~~l~G~K~~vs~a~~Ad~~~v~a~~ 156 (210)
T d1r2ja2 106 AVGFSERQAGSDLSAMR----TRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQ 156 (210)
T ss_dssp EEECCBTTBSSCGGGCC----CEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBC
T ss_pred ccccccccccccccccc----ceEEEeccceEEEEeecccccccccccccceeee
Confidence 89999999999998875 7999999999999999999999999999999974
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.98 E-value=3.7e-32 Score=194.53 Aligned_cols=128 Identities=43% Similarity=0.613 Sum_probs=119.9
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.|++..+...+.|++++.+.+.+....++.......|..+++++||++|+| ++++|+.++
T Consensus 47 l~~~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~---~~~~g~~~~ 123 (231)
T d1jqia2 47 MGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWIT---PFTNGDKIG 123 (231)
T ss_dssp HHHHTTTSSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTG---GGSSSSCCE
T ss_pred HHHhCCcccccccccCCCchhHHHHHHHHHHHHhhccccccceeeeccchhhhhhhcCCHHHHHHHhC---cccCCCccc
Confidence 46899999999999999999999999999999999988888877776567889999999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
|+++|||++|||+..+. |+|++++|+|+|||+|.||||+..+|+++++|+.
T Consensus 124 ~~a~tEp~~gsd~~~~~----t~a~~~~~~~~lnG~K~~vt~~~~a~~~~v~a~~ 174 (231)
T d1jqia2 124 CFALSEPGNGSDAGAAS----TTAREEGDSWVLNGTKAWITNSWEASATVVFAST 174 (231)
T ss_dssp EEECCBTTBSSSTTCCC----CEEEECSSEEEEEEEEEEEETTTTCSEEEEEEES
T ss_pred cceeccCCCCccCcccc----eEEEEECCEEEEeeeeeeEeeccccccccccccc
Confidence 99999999999998875 8999999999999999999999999999999975
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.9e-31 Score=187.57 Aligned_cols=127 Identities=18% Similarity=0.196 Sum_probs=119.9
Q ss_pred CcccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeE
Q psy1218 1 MGELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLG 80 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~ 80 (136)
|+++||+++.+|++|||.+.+..+.+.++|+++++|.+.++++.++. ..+..+..+++++|+++|++ ++.+++...
T Consensus 50 l~~~Gl~~~~vp~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~e~~~~~l~---~~~~g~~~~ 125 (231)
T d1rx0a2 50 AAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCP---PLCTMEKFA 125 (231)
T ss_dssp HHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHH---HHHTTSSCE
T ss_pred HHHcCCcccccchhhccccccchhhhhhHHHHhhhcccccccccccc-chhhhhhhhcchhhhhhhcc---hhhcccccc
Confidence 46899999999999999999999999999999999999998888875 67888999999999999999 999999999
Q ss_pred EEEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 81 VVESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 81 ~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
++++|||+.|||+.++. |++++++|+|+|||+|.||||+.+||+++|+|+.
T Consensus 126 ~~~~te~~~gsd~~~~~----t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~ 176 (231)
T d1rx0a2 126 SYCLTEPGSGSDAASLL----TSAKKQGDHYILNGSKAFISGAGESDIYVVMCRT 176 (231)
T ss_dssp EEECCBTTBSSSGGGCC----CEEEEETTEEEEEEEEEEEETTTTCSEEEEEEES
T ss_pred cccccccccCCCCCCce----EEEEEECCEEEEEeEEccccCCCcCCEEEEEEee
Confidence 99999999999999875 7999999999999999999999999999999985
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.9e-30 Score=183.59 Aligned_cols=128 Identities=21% Similarity=0.292 Sum_probs=115.3
Q ss_pred cccCCCcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeEE
Q psy1218 2 GELGLMGVEVPEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGV 81 (136)
Q Consensus 2 ~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~ 81 (136)
+++|++++.+| ++||.|.+..+++.+.|++++.+.+.+....++..+....+.++++++||++|+| ++++|+.++|
T Consensus 55 ~~~g~~~~~i~-~~gg~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~---~l~~G~~~~~ 130 (236)
T d1siqa2 55 GELGVLGPTIK-GYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLP---QLAKGELLGC 130 (236)
T ss_dssp HHTTCSSTTCE-ETTEECCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHH---HHHTTSSCEE
T ss_pred hhhhccccccc-ccccCCcCHHHHHHHHHhhhccccccccccccccccchhhhhhhcCHHHHHHhcC---ccCCCCEEec
Confidence 57899999985 7899999999999999999999988888777776567889999999999999999 9999999999
Q ss_pred EEecCCCCCCCcccCccccceeeeeCCCeEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 82 VESSEVCRGYNNFEKHYQHRTRCPLGPKGCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 82 ~a~tEp~~Gsd~~~~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
+++|||++|||...+.+ ++++++++|+|+|||+|.||||+..||+++|+|++
T Consensus 131 ~a~tEp~~gsd~~~~~t--~a~~~~~~~~~vlnG~K~~vt~a~~Ad~~~V~art 182 (236)
T d1siqa2 131 FGLTEPNSGSDPSSMET--RAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARC 182 (236)
T ss_dssp EECCBTTBSSCGGGCCC--EEEEETTTTEEEEEEEEEEEETGGGCSEEEEEEEE
T ss_pred ccCcCCCcccccccccc--cccccccccceEeccccccEecCCCceEEEEEecc
Confidence 99999999999988763 23347889999999999999999999999999985
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]
Probab=99.94 E-value=1.2e-26 Score=165.39 Aligned_cols=128 Identities=22% Similarity=0.284 Sum_probs=110.3
Q ss_pred CcccCCCcCCCCCCCCCC---CCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccC
Q psy1218 1 MGELGLMGVEVPEDLGGT---GLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEV 77 (136)
Q Consensus 1 l~~~G~~~l~vP~~~GG~---g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~ 77 (136)
|+++||+++.+|++|||. +........+.+..+............+.......+..+++++||++|++ ++++|+
T Consensus 45 l~~~G~~~~~vP~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~---~~~~G~ 121 (232)
T d1buca2 45 LLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLV---PLVEGT 121 (232)
T ss_dssp HHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHH---HHHHTS
T ss_pred HHhhhcccccccccccccccccccchheehhhhhhhhccccccccccchhhhhhhHHHHhhhhhhhhhhhh---hhhCCC
Confidence 468999999999999954 56788888888888876655555444444467788999999999999999 999999
Q ss_pred eeEEEEecCCCCCCCcccCccccceeeeeCCC-eEEEeeeEEEeeCCCCCCeEEEEeec
Q psy1218 78 VLGVVESSEVCRGYNNFEKHYQHRTRCPLGPK-GCASCGVIMSVNNSLYLGPILKFGNA 135 (136)
Q Consensus 78 ~~~~~a~tEp~~Gsd~~~~~~~~~t~a~~~~~-g~~l~G~k~~vs~~~~a~~~lv~a~~ 135 (136)
.++++++|||++|||...+. |++++++| +|+|||+|.||||+..||+++|.|+.
T Consensus 122 ~~~~~a~te~~~gs~~~~~~----t~a~~~~dg~~~lnG~K~~vt~a~~ad~~~v~a~~ 176 (232)
T d1buca2 122 KLGAFGLTEPNAGTDASGQQ----TIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMT 176 (232)
T ss_dssp SCEEEECCBTTBSSCGGGCC----CEEEECTTSCEEEEEEEEEEETTTTCSEEEEEEES
T ss_pred EEecccccccccccccccce----EEEEEcCCCEEEEEEEEeeecccccceEEEEEEEe
Confidence 99999999999999998875 67777766 59999999999999999999999985
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=9.3e-21 Score=137.90 Aligned_cols=112 Identities=9% Similarity=0.036 Sum_probs=86.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCchhHHHHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeEEEEecCCCCCC
Q psy1218 12 PEDLGGTGLDYLAYAIATEEISRGCASCGVIMSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGVVESSEVCRGY 91 (136)
Q Consensus 12 P~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~a~tEp~~Gs 91 (136)
++++|+. ++.....+.++.. .+.+.++ .+|..++...|..+|+++||++|+| ++++|+.++|+++|||++||
T Consensus 74 ~~~~G~~--~~~~~~~~~~~~~-~~~~~~~--~v~~~l~~~~i~~~Gt~eqk~~~l~---~~~~g~~~~~~a~tEp~~Gs 145 (267)
T d2ddha3 74 MREYGIS--DPEEIMWFKNSVH-RGHPEPL--DLHLGMFLPTLLHQATAEQQERFFM---PAWNLEITGTYAQTEMGHGT 145 (267)
T ss_dssp HHHTTCC--CHHHHHHHHHHHH-TTCCCTT--HHHHHTHHHHHC-CCCHHHHHHHHH---HHHTTSSCEEEECCBTTBSS
T ss_pred HHhcCCC--CHHHHHHHHhhhc-cCCCcee--hhhhhhhhhHHHhhCCHHHHHHHHH---HHhcCCeeeeehhcccCccc
Confidence 3445442 4555545444443 3444443 4444467788999999999999999 99999999999999999999
Q ss_pred CcccCccccceeeeeCC--CeEEEee-----eEEEeeC-CCCCCeEEEEeec
Q psy1218 92 NNFEKHYQHRTRCPLGP--KGCASCG-----VIMSVNN-SLYLGPILKFGNA 135 (136)
Q Consensus 92 d~~~~~~~~~t~a~~~~--~g~~l~G-----~k~~vs~-~~~a~~~lv~a~~ 135 (136)
|+.+++ |+|++++ +.|+||| +|.||+| +..||+++|+|++
T Consensus 146 d~~~~~----T~A~~~~~~~~~vlnG~k~~~~K~wit~~~~~a~~~iv~a~~ 193 (267)
T d2ddha3 146 HLRGLE----TTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQL 193 (267)
T ss_dssp CGGGCC----CEEEEETTTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEE
T ss_pred cccccc----cceeecccCceeecCccccceeeecCCCCcccCCEEEEeeec
Confidence 999986 7888654 6799999 6999998 6789999999985
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.81 E-value=3.5e-20 Score=135.05 Aligned_cols=86 Identities=9% Similarity=0.041 Sum_probs=76.6
Q ss_pred HHHhhhhhHHHHhcCCCHHHHHhhcCCcccccccCeeEEEEecCCCCCCCcccCccccceeeeeC--CCeEEEee-----
Q psy1218 43 MSVNNSLYLGPLLKFDFRPMLLKLVFHGTLVCHEVVLGVVESSEVCRGYNNFEKHYQHRTRCPLG--PKGCASCG----- 115 (136)
Q Consensus 43 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~a~tEp~~Gsd~~~~~~~~~t~a~~~--~~g~~l~G----- 115 (136)
+.+|..++...|..+|+++||++||| ++++|+.++|+|+|||++|||+.+++ |+|+++ ++.|+|||
T Consensus 98 ~~vh~~~~~~~i~~~Gt~eQk~~~Lp---~l~~G~~~~~~a~TEp~~GSd~~~l~----T~A~~d~~gd~~vlng~k~~~ 170 (271)
T d1w07a3 98 VDLHWGMFVPAIKGQGTEEQQKKWLS---LANKMQIIGCYAQTELGHGSNVQGLE----TTATLDPKTDEFVIHTPTQTA 170 (271)
T ss_dssp HHHHHHTHHHHHHHHSCHHHHHHHHH---HHHTTSSCEEEECCBTTBSSCGGGCC----CEEEEETTTTEEEEECCSGGG
T ss_pred HHHHHHhhHHHHHhhCCHHHHHHhhH---HHhCCCeEEEecccCCccccCccccc----ceeeecCCCceeeecccccce
Confidence 45565578889999999999999999 99999999999999999999999986 788865 67799999
Q ss_pred eEEEeeC-CCCCCeEEEEeec
Q psy1218 116 VIMSVNN-SLYLGPILKFGNA 135 (136)
Q Consensus 116 ~k~~vs~-~~~a~~~lv~a~~ 135 (136)
+|.|++| +..|++++|+|++
T Consensus 171 ~K~wi~~~g~~a~~~vv~a~~ 191 (271)
T d1w07a3 171 SKWWPGGLGKVSTHAVVYARL 191 (271)
T ss_dssp SEECCTTTTTTCSEEEEEEEE
T ss_pred eeeccCCchhhhhhhheeeee
Confidence 7999998 5679999999986
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]
Probab=99.51 E-value=6.3e-16 Score=112.48 Aligned_cols=83 Identities=5% Similarity=-0.129 Sum_probs=68.9
Q ss_pred hHHHHhcCCCH--HHHHhhcCCcccccccCeeEEEEecCCCCCCCcccCc----cccceeeeeCCCeEEEeeeEEEeeCC
Q psy1218 50 YLGPLLKFDFR--PMLLKLVFHGTLVCHEVVLGVVESSEVCRGYNNFEKH----YQHRTRCPLGPKGCASCGVIMSVNNS 123 (136)
Q Consensus 50 ~~~~l~~~g~~--~~~~~~l~~~~~~~~g~~~~~~a~tEp~~Gsd~~~~~----~~~~t~a~~~~~g~~l~G~k~~vs~~ 123 (136)
....+..++++ +++++|++ .+.+++...+.++|||..+++....+ ....+.++++++||+|||.|.|+|++
T Consensus 116 ~~~~~~~~g~~~~e~~~~yl~---~~~~~dl~~t~altePq~dr~~~~~~q~~~~~~~~v~~~~~~g~vvnG~K~~~T~a 192 (275)
T d1u8va2 116 TYEIDQKYGTNYHKNFTEYLK---YIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGS 192 (275)
T ss_dssp HHHHHHHHCCCHHHHHHHHHH---HHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCEEEEECSSEEEEEEEECSCTTC
T ss_pred HHHHhhhhCcHHHHHHHHHHH---HHHhCCeEEEEeeecCCCCCccChhhccCccceEEEEEecCCEEEEeeEEEEecCC
Confidence 34455678886 88899999 99999999999999999999875421 11235678899999999999999999
Q ss_pred CCCCeEEEEeec
Q psy1218 124 LYLGPILKFGNA 135 (136)
Q Consensus 124 ~~a~~~lv~a~~ 135 (136)
..||+++|+++.
T Consensus 193 ~~ad~~~v~~~~ 204 (275)
T d1u8va2 193 INSHEHIIMPTI 204 (275)
T ss_dssp TTCSEEEECCSS
T ss_pred CccceEEEEecc
Confidence 999999999875
