Psyllid ID: psy1228

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
MVGFEPGTFCMASKRVTTGQTVFYYYIFKVLDREGRNQYDEESDSDEEQEGARVVRARQKVASTSKSPRALTRGKYLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSGEDFFILLFT
ccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccc
cccccccHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHccccHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcc
mvgfepgtfcmaskrvttgQTVFYYYIFKVLdregrnqydeesdsdeeQEGARVVRARQKVastskspraltrgkyldnkplkRRLYTLCKCLMDyrdqdgrqpmlmfmelpsakiypeYYKVIKqpidmcqiesniqnekyrsqdEILSDFRLMFgncrefnepgsliyEDAVNLEKVLLERVAelgplpsgedfFILLFT
mvgfepgtfcmaskrvttgqTVFYYYIFKVLDREGRNqydeesdsdeeqegarvvrarqkvastskspraltrgkyldnkplkrRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAelgplpsgedffillft
MVGFEPGTFCMASKRVTTGQTVFYYYIFKVLDREGRNQYdeesdsdeeqeGARVVRARQKVASTSKSPRALTRGKYLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSGEDFFILLFT
******GTFCMASKRVTTGQTVFYYYIFKVLD*******************************************YLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSGEDFFILLF*
*************************************************************************************LYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERV**********DFFILLFT
MVGFEPGTFCMASKRVTTGQTVFYYYIFKVLDREGR*********************************ALTRGKYLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSGEDFFILLFT
**GFEPGTFCMASKRVTTGQTVFYYYIFKVLDRE********************************************NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGP***GED**I*LFT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVGFEPGTFCMASKRVTTGQTVFYYYIFKVLDREGRNQYDEESDSDEEQEGARVVRARQKVASTSKSPRALTRGKYLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSGEDFFILLFT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query202 2.2.26 [Sep-21-2011]
Q90941 1633 Protein polybromo-1 OS=Ga yes N/A 0.559 0.069 0.447 1e-21
Q86U86 1689 Protein polybromo-1 OS=Ho no N/A 0.564 0.067 0.443 6e-21
Q8BSQ9 1634 Protein polybromo-1 OS=Mu yes N/A 0.564 0.069 0.434 1e-20
Q9UTN61199 Chromatin structure-remod yes N/A 0.702 0.118 0.347 1e-16
Q8K1P71613 Transcription activator B no N/A 0.613 0.076 0.352 2e-16
Q3TKT41613 Transcription activator B no N/A 0.613 0.076 0.352 2e-16
O944211680 SWI/SNF chromatin-remodel no N/A 0.534 0.064 0.388 7e-16
Q6DIC01577 Probable global transcrip no N/A 0.603 0.077 0.345 8e-16
P220821703 Transcription regulatory yes N/A 0.643 0.076 0.351 5e-15
A7Z0191606 Transcription activator B no N/A 0.5 0.062 0.398 8e-15
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1 Back     alignment and function desciption
 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 83  KRRLYTLCKCLMDYRDQ-DGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEK 141
           K+R+  L   +++ R+   GR+   +FM  PS K YP+YYK+I +P+D+  IE NI+N+K
Sbjct: 518 KQRMKILYNAVLEARESGTGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKMIEHNIRNDK 577

Query: 142 YRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSGED 195
           Y  ++ ++ D +LMF N R +NE GS +Y DA  LEK+L E+  ELGPLP  +D
Sbjct: 578 YVGEEAMIDDMKLMFRNARHYNEEGSQVYNDAHMLEKILKEKRKELGPLPEDDD 631
Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).
Gallus gallus (taxid: 9031)
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4 Back     alignment and function description
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1 Back     alignment and function description
>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1 Back     alignment and function description
>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1 Back     alignment and function description
>sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2 Back     alignment and function description
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1 Back     alignment and function description
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1 Back     alignment and function description
>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
328719779 1680 PREDICTED: protein polybromo-1-like [Acy 0.702 0.084 0.657 5e-48
383852643 1651 PREDICTED: protein polybromo-1-like [Meg 0.737 0.090 0.590 7e-46
380016641 1651 PREDICTED: protein polybromo-1-like [Api 0.737 0.090 0.584 7e-45
340714787 1649 PREDICTED: LOW QUALITY PROTEIN: protein 0.737 0.090 0.584 7e-45
350415036 1651 PREDICTED: protein polybromo-1-like [Bom 0.737 0.090 0.584 8e-45
328793686 1651 PREDICTED: protein polybromo-1 [Apis mel 0.737 0.090 0.577 2e-44
307180267 1644 Protein polybromo-1 [Camponotus floridan 0.579 0.071 0.669 2e-43
307207938 1647 Protein polybromo-1 [Harpegnathos saltat 0.579 0.071 0.669 5e-43
322790256 1587 hypothetical protein SINV_09840 [Solenop 0.584 0.074 0.661 6e-43
332018144 1646 Protein polybromo-1 [Acromyrmex echinati 0.584 0.071 0.661 2e-42
>gi|328719779|ref|XP_001944619.2| PREDICTED: protein polybromo-1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/146 (65%), Positives = 111/146 (76%), Gaps = 4/146 (2%)

Query: 59  QKVASTSK----SPRALTRGKYLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSA 114
           Q  + TSK    SPR LTRGKYL+N PLKRRLY LCKCLMDY  + GR PMLMFME+PS 
Sbjct: 477 QSTSRTSKKFARSPRCLTRGKYLNNIPLKRRLYALCKCLMDYTTEHGRVPMLMFMEIPSK 536

Query: 115 KIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAV 174
           K+YP YYKVI +PIDM  IE  I+ EKY+S+DEIL DF+LMF NCR+FNE GSLIYEDA 
Sbjct: 537 KLYPAYYKVISEPIDMLTIEEKIKQEKYKSEDEILQDFKLMFDNCRQFNEEGSLIYEDAN 596

Query: 175 NLEKVLLERVAELGPLPSGEDFFILL 200
            LEKVLL+R  ELGP+ +  +   LL
Sbjct: 597 TLEKVLLDRSKELGPVLTKPNKISLL 622

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383852643|ref|XP_003701836.1| PREDICTED: protein polybromo-1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380016641|ref|XP_003692286.1| PREDICTED: protein polybromo-1-like [Apis florea] Back     alignment and taxonomy information
>gi|340714787|ref|XP_003395905.1| PREDICTED: LOW QUALITY PROTEIN: protein polybromo-1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350415036|ref|XP_003490512.1| PREDICTED: protein polybromo-1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328793686|ref|XP_625055.3| PREDICTED: protein polybromo-1 [Apis mellifera] Back     alignment and taxonomy information
>gi|307180267|gb|EFN68300.1| Protein polybromo-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307207938|gb|EFN85497.1| Protein polybromo-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|322790256|gb|EFZ15255.1| hypothetical protein SINV_09840 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332018144|gb|EGI58753.1| Protein polybromo-1 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
FB|FBgn0039227 1654 polybromo "polybromo" [Drosoph 0.633 0.077 0.431 8.5e-24
UNIPROTKB|F1NLL8 1630 PBRM1 "Protein polybromo-1" [G 0.559 0.069 0.447 3e-21
UNIPROTKB|Q90941 1633 PBRM1 "Protein polybromo-1" [G 0.559 0.069 0.447 3e-21
UNIPROTKB|H0Y5B5 1085 PBRM1 "Protein polybromo-1" [H 0.559 0.104 0.447 7.4e-21
UNIPROTKB|E7EVG2 1461 PBRM1 "Protein polybromo-1" [H 0.559 0.077 0.447 1.1e-20
ZFIN|ZDB-GENE-010501-3 1648 pbrm1l "polybromo 1, like" [Da 0.658 0.080 0.402 1.3e-20
UNIPROTKB|Q86U86 1689 PBRM1 "Protein polybromo-1" [H 0.559 0.066 0.447 1.4e-20
MGI|MGI:1923998 1634 Pbrm1 "polybromo 1" [Mus muscu 0.559 0.069 0.438 2.7e-20
UNIPROTKB|E2RRR3 1635 PBRM1 "Uncharacterized protein 0.559 0.069 0.438 2.7e-20
UNIPROTKB|E1BNH8 1664 E1BNH8 "Uncharacterized protei 0.559 0.067 0.438 2.8e-20
FB|FBgn0039227 polybromo "polybromo" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 288 (106.4 bits), Expect = 8.5e-24, P = 8.5e-24
 Identities = 57/132 (43%), Positives = 88/132 (66%)

Query:    63 STSKSPRALTRGKYLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYK 122
             + S SP++    +   N  +K+++ ++ K L+DY     R+P+ MFME P  KIYP+YY 
Sbjct:   496 NNSNSPKS---NRIAINAAIKKKILSIQKYLVDY-SLGNRRPIEMFMEKPPRKIYPDYYD 551

Query:   123 VIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLE 182
             +I+ PIDM  IE NI+ ++Y + ++++SD+RLMF NCR++NE GS IYEDA  LE+ L E
Sbjct:   552 IIQNPIDMNTIEHNIRTDRYAAVEDVVSDYRLMFSNCRQYNEEGSNIYEDANILERALNE 611

Query:   183 RVAELGPLPSGE 194
             ++ E   L  G+
Sbjct:   612 KLKEFPGLTEGK 623
GO:0003677 "DNA binding" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005700 "polytene chromosome" evidence=IDA
GO:0031936 "negative regulation of chromatin silencing" evidence=IGI
GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI
GO:0007306 "eggshell chorion assembly" evidence=IMP
GO:0007305 "vitelline membrane formation involved in chorion-containing eggshell formation" evidence=IMP
UNIPROTKB|F1NLL8 PBRM1 "Protein polybromo-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q90941 PBRM1 "Protein polybromo-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y5B5 PBRM1 "Protein polybromo-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EVG2 PBRM1 "Protein polybromo-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010501-3 pbrm1l "polybromo 1, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q86U86 PBRM1 "Protein polybromo-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1923998 Pbrm1 "polybromo 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRR3 PBRM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNH8 E1BNH8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
cd05518103 cd05518, Bromo_polybromo_IV, Bromodomain, polybrom 7e-43
cd05515105 cd05515, Bromo_polybromo_V, Bromodomain, polybromo 6e-36
cd05519103 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam 1e-30
smart00297107 smart00297, BROMO, bromo domain 1e-28
cd0436999 cd04369, Bromodomain, Bromodomain 2e-26
cd05516107 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su 6e-23
cd05517103 cd05517, Bromo_polybromo_II, Bromodomain, polybrom 7e-23
cd05520103 cd05520, Bromo_polybromo_III, Bromodomain, polybro 7e-22
cd05522104 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i 3e-21
COG5076 371 COG5076, COG5076, Transcription factor involved in 5e-20
pfam0043984 pfam00439, Bromodomain, Bromodomain 5e-19
cd05509101 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s 2e-18
cd05497107 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like 5e-18
cd05524113 cd05524, Bromo_polybromo_I, Bromodomain, polybromo 2e-17
cd05499102 cd05499, Bromo_BDF1_2_II, Bromodomain 4e-16
cd0550397 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA 7e-16
cd05504115 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o 2e-15
cd05500103 cd05500, Bromo_BDF1_2_I, Bromodomain 3e-14
cd05521106 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in 1e-13
cd05502109 cd05502, Bromo_tif1_like, Bromodomain; tif1_like s 3e-13
cd05498102 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik 8e-13
cd05511112 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf 2e-12
cd0551398 cd05513, Bromo_brd7_like, Bromodomain, brd7_like s 5e-10
cd05525106 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa 1e-09
cd0550699 cd05506, Bromo_plant1, Bromodomain, uncharacterize 1e-09
cd05529128 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe 2e-09
cd0550597 cd05505, Bromo_WSTF_like, Bromodomain; Williams sy 4e-08
cd0551298 cd05512, Bromo_brd1_like, Bromodomain; brd1_like s 5e-08
cd05510112 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s 1e-07
cd05495108 cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub 2e-07
cd05528112 cd05528, Bromo_AAA, Bromodomain; sub-family co-occ 6e-06
cd05507104 cd05507, Bromo_brd8_like, Bromodomain, brd8_like s 2e-05
cd0550899 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf 3e-05
cd05526110 cd05526, Bromo_polybromo_VI, Bromodomain, polybrom 5e-05
cd05496119 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I 7e-04
cd05501102 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li 0.003
>gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV Back     alignment and domain information 
 Score =  139 bits (351), Expect = 7e-43
 Identities = 51/103 (49%), Positives = 74/103 (71%)

Query: 82  LKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEK 141
            K+R+  L   +++YR+  GR+   +FME PS K YP+YYK+I +PID+  IE NI+N+K
Sbjct: 1   RKKRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDK 60

Query: 142 YRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERV 184
           Y +++E++ DF+LMF N R +NE GS +YEDA  LEKVL E+ 
Sbjct: 61  YATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVLKEKR 103

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103
>gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V Back     alignment and domain information
>gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|197636 smart00297, BROMO, bromo domain Back     alignment and domain information
>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II Back     alignment and domain information
>gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III Back     alignment and domain information
>gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I Back     alignment and domain information
>gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain Back     alignment and domain information
>gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain Back     alignment and domain information
>gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily Back     alignment and domain information
>gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily Back     alignment and domain information
>gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup Back     alignment and domain information
>gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family Back     alignment and domain information
>gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information
>gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily Back     alignment and domain information
>gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily Back     alignment and domain information
>gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily Back     alignment and domain information
>gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup Back     alignment and domain information
>gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily Back     alignment and domain information
>gnl|CDD|99956 cd05526, Bromo_polybromo_VI, Bromodomain, polybromo repeat VI Back     alignment and domain information
>gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 202
cd05516107 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s 99.97
cd05497107 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily 99.97
cd05496119 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub 99.97
cd05515105 Bromo_polybromo_V Bromodomain, polybromo repeat V. 99.97
cd05525106 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 99.96
cd05507104 Bromo_brd8_like Bromodomain, brd8_like subgroup. I 99.96
cd05495108 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb 99.96
cd0550597 Bromo_WSTF_like Bromodomain; Williams syndrome tra 99.96
cd05519103 Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci 99.96
cd05520103 Bromo_polybromo_III Bromodomain, polybromo repeat 99.96
cd05518103 Bromo_polybromo_IV Bromodomain, polybromo repeat I 99.96
cd05524113 Bromo_polybromo_I Bromodomain, polybromo repeat I. 99.96
cd05517103 Bromo_polybromo_II Bromodomain, polybromo repeat I 99.96
cd05504115 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li 99.96
cd05510112 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. 99.96
cd05509101 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. 99.96
cd0550397 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s 99.96
cd0550899 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC 99.96
cd05502109 Bromo_tif1_like Bromodomain; tif1_like subfamily. 99.96
cd05522104 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l 99.95
cd0551398 Bromo_brd7_like Bromodomain, brd7_like subgroup. T 99.95
cd05521106 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik 99.95
cd05528112 Bromo_AAA Bromodomain; sub-family co-occurring wit 99.95
cd05499102 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam 99.95
cd05501102 Bromo_SP100C_like Bromodomain, SP100C_like subfami 99.95
cd0551298 Bromo_brd1_like Bromodomain; brd1_like subfamily. 99.95
cd0550699 Bromo_plant1 Bromodomain, uncharacterized subfamil 99.95
cd05511112 Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum 99.95
cd05500103 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami 99.95
cd05498102 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil 99.95
KOG1474|consensus 640 99.94
cd05529128 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like 99.93
smart00297107 BROMO bromo domain. 99.93
cd05526110 Bromo_polybromo_VI Bromodomain, polybromo repeat V 99.92
cd0436999 Bromodomain Bromodomain. Bromodomains are found in 99.91
PF0043984 Bromodomain: Bromodomain; InterPro: IPR001487 Brom 99.91
cd05492109 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family 99.9
COG5076 371 Transcription factor involved in chromatin remodel 99.86
KOG1245|consensus1404 99.78
KOG1472|consensus720 99.6
KOG1827|consensus 629 99.46
KOG0386|consensus1157 99.42
KOG0955|consensus 1051 99.31
cd05494114 Bromodomain_1 Bromodomain; uncharacterized subfami 99.29
cd05491119 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, 99.26
KOG0008|consensus1563 99.17
KOG0008|consensus 1563 99.17
KOG1472|consensus 720 98.83
KOG1474|consensus 640 98.64
KOG1828|consensus 418 98.6
KOG1828|consensus418 98.4
cd05493131 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- 97.61
COG5076371 Transcription factor involved in chromatin remodel 97.45
KOG0644|consensus1113 95.4
KOG0732|consensus 1080 88.65
KOG0644|consensus 1113 88.03
KOG1827|consensus 629 85.62
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information 
Probab=99.97  E-value=4.5e-31  Score=196.13  Aligned_cols=107  Identities=37%  Similarity=0.720  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228          81 PLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCR  160 (202)
Q Consensus        81 ~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~  160 (202)
                      +|+++|+.|++.|.++.+..|++++++|..||++..+||||++|++||||++|++||++|.|.++++|..||.|||.||+
T Consensus         1 ~l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~   80 (107)
T cd05516           1 ELTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQ   80 (107)
T ss_pred             CHHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence            37899999999999999989999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228         161 EFNEPGSLIYEDAVNLEKVLLERVAEL  187 (202)
Q Consensus       161 ~YN~~~s~i~~~A~~L~~~f~~~~~~i  187 (202)
                      .||+++|.++.+|..|++.|.++++++
T Consensus        81 ~yN~~~s~i~~~a~~l~~~f~~~~~~~  107 (107)
T cd05516          81 TFNLEGSLIYEDSIVLQSVFKSARQKI  107 (107)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999998764

SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V Back     alignment and domain information
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family Back     alignment and domain information
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup Back     alignment and domain information
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily Back     alignment and domain information
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III Back     alignment and domain information
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV Back     alignment and domain information
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I Back     alignment and domain information
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II Back     alignment and domain information
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily Back     alignment and domain information
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily Back     alignment and domain information
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily Back     alignment and domain information
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup Back     alignment and domain information
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>cd05499 Bromo_BDF1_2_II Bromodomain Back     alignment and domain information
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily Back     alignment and domain information
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily Back     alignment and domain information
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily Back     alignment and domain information
>cd05500 Bromo_BDF1_2_I Bromodomain Back     alignment and domain information
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>KOG1474|consensus Back     alignment and domain information
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>smart00297 BROMO bromo domain Back     alignment and domain information
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI Back     alignment and domain information
>cd04369 Bromodomain Bromodomain Back     alignment and domain information
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] Back     alignment and domain information
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1245|consensus Back     alignment and domain information
>KOG1472|consensus Back     alignment and domain information
>KOG1827|consensus Back     alignment and domain information
>KOG0386|consensus Back     alignment and domain information
>KOG0955|consensus Back     alignment and domain information
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily Back     alignment and domain information
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi Back     alignment and domain information
>KOG0008|consensus Back     alignment and domain information
>KOG0008|consensus Back     alignment and domain information
>KOG1472|consensus Back     alignment and domain information
>KOG1474|consensus Back     alignment and domain information
>KOG1828|consensus Back     alignment and domain information
>KOG1828|consensus Back     alignment and domain information
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG0644|consensus Back     alignment and domain information
>KOG0732|consensus Back     alignment and domain information
>KOG0644|consensus Back     alignment and domain information
>KOG1827|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
3tlp_A150 Crystal Structure Of The Fourth Bromodomain Of Huma 4e-22
3g0j_A124 Crystal Structure Of The Fifth Bromodomain Of Human 1e-18
2yqd_A120 Solution Structure Of The Fifth Bromodomain From Mo 2e-18
2dat_A123 Solution Structure Of The Bromodomain Of Human SwiS 3e-16
3uvd_A124 Crystal Structure Of The Bromodomain Of Human Trans 1e-15
2grc_A129 1.5 A Structure Of Bromodomain From Human Brg1 Prot 1e-15
2h60_A128 Solution Structure Of Human Brg1 Bromodomain Length 2e-15
2ktb_B121 Solution Structure Of The Second Bromodomain Of Hum 7e-15
3ljw_A120 Crystal Structure Of The Second Bromodomain Of Huma 7e-15
3hmf_A116 Crystal Structure Of The Second Bromodomain Of Huma 1e-14
3k2j_A130 Crystal Structure Of The 3rd Bromodomain Of Human P 5e-13
4a9e_A154 N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- 3e-11
2ydw_A153 Crystal Structure Of The First Bromodomain Of Human 3e-11
4don_A145 Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy 4e-11
3jvj_A131 Crystal Structure Of The Bromodomain 1 In Mouse Brd 5e-11
2yw5_A138 Solution Structure Of The Bromodomain From Human Br 5e-11
2oss_A127 Crystal Structure Of The Bromo Domain 1 In Human Br 6e-11
4hbw_A127 Crystal Structure Of The First Bromodomain Of Human 7e-11
2nxb_A123 Crystal Structure Of Human Bromodomain Containing P 7e-11
2l5e_A128 Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt 8e-11
3iu5_A116 Crystal Structure Of The First Bromodomain Of Human 1e-10
2yyn_A135 Crystal Sturcture Of Human Bromodomain Protein Leng 3e-10
3o33_A184 Crystal Structure Of Trim24 Phd-Bromo In The Free S 5e-10
2rfj_A119 Crystal Structure Of The Bromo Domain 1 In Human Br 1e-09
3aqa_A128 Crystal Structure Of The Human Brd2 Bd1 Bromodomain 6e-09
1x0j_A122 Crystal Structure Analysis Of The N-Terminal Bromod 6e-09
2wp2_A120 Structure Of Brdt Bromodomain Bd1 Bound To A Diacet 1e-08
1n72_A118 Structure And Ligand Of A Histone Acetyltransferase 1e-08
3gg3_A119 Crystal Structure Of The Bromodomain Of Human Pcaf 1e-08
1e6i_A121 Bromodomain From Gcn5 Complexed With Acetylated H4 3e-08
2g4a_A116 Solution Structure Of A Bromodomain From Ring3 Prot 6e-08
3oni_A114 Crystal Structure Of The Second Bromodomain Of Huma 6e-08
2dvv_A112 Crystal Structure Of The Second Bromodomain Of The 6e-08
3jvl_A120 Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le 6e-08
2r10_A361 Structure Of An Acetylated Rsc4 Tandem Bromodomain 1e-07
2ouo_A130 Crystal Structure Of The Bromo Domain 2 In Human Br 1e-07
2r0v_A346 Structure Of The Rsc4 Tandem Bromodomain Acetylated 1e-07
2i8n_A114 Solution Structure Of The Second Bromodomain Of Brd 1e-07
2lsp_B128 Solution Structures Of Brd4 Second Bromodomain With 1e-07
3qzs_A115 Crystal Structure Of Bptf Bromo In Complex With His 2e-07
3qzt_A115 Crystal Structure Of Bptf Bromo In Complex With His 3e-07
3uv2_A126 Crystal Structure Of The Bromodomain Of Human Nucle 3e-07
3qzv_A174 Crystal Structure Of Bptf Phd-Linker-Bromo In Compl 4e-07
2ri7_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 4e-07
2f6j_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 9e-07
2wp1_A126 Structure Of Brdt Bromodomain 2 Bound To An Acetyla 1e-06
3u5m_A207 Crystal Structure Of Trim33 Phd-Bromo In The Free S 1e-06
2r0s_A285 Crystal Structure Of The Rsc4 Tandem Bromodomain Le 2e-06
1eqf_A280 Crystal Structure Of The Double Bromodomain Module 2e-06
3aad_A292 Structure Of The Histone Chaperone Cia/asf1-double 2e-06
3nxb_A116 Crystal Structure Of The Bromodomain Of Human Cecr2 2e-06
3uv4_A158 Crystal Structure Of The Second Bromodomain Of Huma 2e-06
2r0y_A311 Structure Of The Rsc4 Tandem Bromodomain In Complex 2e-06
3uv5_A265 Crystal Structure Of The Tandem Bromodomains Of Hum 2e-06
3g0l_A117 Crystal Structure Of Human Bromodomain Adjacent To 2e-06
3hmh_A155 Crystal Structure Of The Second Bromodomain Of Huma 2e-06
2dww_A114 Crystal Structure Of Bromodomain-Containing Protein 2e-06
2e7o_A112 Solution Structure Of The Bromodomain From Human Br 3e-06
3d7c_A112 Crystal Structure Of The Bromodomain Of Human Gcn5, 6e-06
3rcw_A135 Crystal Structure Of The Bromodomain Of Human Brd1 6e-06
1f68_A103 Nmr Solution Structure Of The Bromodomain From Huma 9e-06
2oo1_A113 Crystal Structure Of The Bromo Domain 2 Of Human Br 1e-05
2e7n_A117 Solution Structure Of The Second Bromodomain From H 1e-05
2i7k_A117 Solution Structure Of The Bromodomain Of Human Brd7 2e-05
3hme_A123 Crystal Structure Of Human Bromodomain Containing 9 9e-05
2d9e_A121 Solution Structure Of The Bromodomain Of Peregrin L 1e-04
3i3j_A124 Crystal Structure Of The Bromodomain Of Human Ep300 8e-04
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150 Back     alignment and structure 
Iteration: 1

 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 83  KRRLYTLCKCLMDYRD-QDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEK 141
           K+R+  L   +++ R+   GR+   +FM  PS K YP+YYK+I +P+D+  IE NI+N+K
Sbjct: 26  KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDK 85
Query: 142 YRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSGEDF 196
           Y  ++ ++ D +LMF N R +NE GS +Y DA  LEK+L E+  ELGPLP  +D 
Sbjct: 86  YAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDM 140
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 124 Back     alignment and structure
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse Polybromo-1 Length = 120 Back     alignment and structure
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF Related Matrix Associated Actin Dependent Regulator Of Cromatin Subfamily A Member 2 Length = 123 Back     alignment and structure
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human Transcription Activator Brg1 (Smarca4) In Complex With N-Methyl-2-Pyrrolidone Length = 124 Back     alignment and structure
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A Central Atpase Of SwiSNF REMODELING COMPLEX Length = 129 Back     alignment and structure
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain Length = 128 Back     alignment and structure
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 Back     alignment and structure
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 Back     alignment and structure
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 130 Back     alignment and structure
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 Back     alignment and structure
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 Back     alignment and structure
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 Back     alignment and structure
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 Back     alignment and structure
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 Back     alignment and structure
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 Back     alignment and structure
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 Back     alignment and structure
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 Back     alignment and structure
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 Back     alignment and structure
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 Back     alignment and structure
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 Back     alignment and structure
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 Back     alignment and structure
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 Back     alignment and structure
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 Back     alignment and structure
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 Back     alignment and structure
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 Back     alignment and structure
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 Back     alignment and structure
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 Back     alignment and structure
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 Back     alignment and structure
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 Back     alignment and structure
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 Back     alignment and structure
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 Back     alignment and structure
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone Chimera Length = 361 Back     alignment and structure
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain Containing Protein 4 (Brd4) Length = 130 Back     alignment and structure
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25 Length = 346 Back     alignment and structure
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 Back     alignment and structure
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K310ac Peptide Length = 128 Back     alignment and structure
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 Back     alignment and structure
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 Back     alignment and structure
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 Back     alignment and structure
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 Back     alignment and structure
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 Back     alignment and structure
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 Back     alignment and structure
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 Back     alignment and structure
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 Back     alignment and structure
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain Length = 285 Back     alignment and structure
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 Back     alignment and structure
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 Back     alignment and structure
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 Back     alignment and structure
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 Back     alignment and structure
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With An Acetylated H3 Peptide Length = 311 Back     alignment and structure
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 Back     alignment and structure
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 Back     alignment and structure
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 Back     alignment and structure
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4 Length = 114 Back     alignment and structure
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 Back     alignment and structure
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 Back     alignment and structure
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135 Back     alignment and structure
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 Back     alignment and structure
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 Back     alignment and structure
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 Back     alignment and structure
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7 Protein Length = 117 Back     alignment and structure
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123 Back     alignment and structure
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121 Back     alignment and structure
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 7e-42
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 2e-40
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 2e-40
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 2e-40
2dat_A123 Possible global transcription activator SNF2L2; br 6e-40
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 2e-39
2grc_A129 Probable global transcription activator SNF2L4; br 2e-37
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 8e-37
2r0y_A311 Chromatin structure-remodeling complex protein RSC 1e-28
2r0y_A 311 Chromatin structure-remodeling complex protein RSC 1e-26
2r10_A361 Chromatin structure-remodeling complex protein RSC 2e-28
2r10_A 361 Chromatin structure-remodeling complex protein RSC 3e-27
3aad_A292 Transcription initiation factor TFIID subunit 1; p 6e-28
3aad_A 292 Transcription initiation factor TFIID subunit 1; p 3e-23
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 2e-27
3uv5_A 265 Transcription initiation factor TFIID subunit 1; t 2e-23
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 2e-27
3d7c_A112 General control of amino acid synthesis protein 5; 1e-25
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 3e-24
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 8e-24
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 5e-23
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 7e-23
3nxb_A116 CAT eye syndrome critical region protein 2; struct 8e-23
4alg_A154 Bromodomain-containing protein 2; signaling protei 9e-23
2d9e_A121 Peregrin; four-helix bundle, transcription activat 1e-22
3fkm_X166 Signaling protein; bromodomain, malaria, structura 1e-22
3uv4_A158 Second bromodomain of human transcription initiat 4e-22
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 4e-22
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 1e-21
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 1e-21
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 2e-21
3rcw_A135 Bromodomain-containing protein 1; transcription, s 5e-21
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 6e-21
3p1f_A119 CREB-binding protein; structural genomics consorti 9e-21
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 1e-20
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 3e-19
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 1e-18
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 2e-17
3dai_A130 ATPase family AAA domain-containing protein 2; anc 3e-17
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 2e-15
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 7e-13
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 8e-12
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150 Back     alignment and structure
 Score =  137 bits (347), Expect = 7e-42
 Identities = 52/134 (38%), Positives = 81/134 (60%), Gaps = 1/134 (0%)

Query: 64  TSKSPRALTRGKYLDNKPLKRRLYTLCKCLMDYRD-QDGRQPMLMFMELPSAKIYPEYYK 122
           +S +    +  +       K+R+  L   +++ R+   GR+   +FM  PS K YP+YYK
Sbjct: 7   SSATSDTGSAKRKSKKNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYK 66

Query: 123 VIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLE 182
           +I +P+D+  IE NI+N+KY  ++ ++ D +LMF N R +NE GS +Y DA  LEK+L E
Sbjct: 67  IILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKE 126

Query: 183 RVAELGPLPSGEDF 196
           +  ELGPLP  +D 
Sbjct: 127 KRKELGPLPDDDDM 140
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120 Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124 Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129 Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112 Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135 Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116 Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121 Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158 Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117 Back     alignment and structure
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120 Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
2dat_A123 Possible global transcription activator SNF2L2; br 100.0
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 100.0
2grc_A129 Probable global transcription activator SNF2L4; br 99.98
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 99.98
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.98
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.97
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.97
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 99.97
3d7c_A112 General control of amino acid synthesis protein 5; 99.97
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 99.97
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 99.97
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 99.97
2d9e_A121 Peregrin; four-helix bundle, transcription activat 99.97
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 99.97
4alg_A154 Bromodomain-containing protein 2; signaling protei 99.97
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 99.97
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 99.97
3nxb_A116 CAT eye syndrome critical region protein 2; struct 99.97
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 99.96
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 99.96
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 99.96
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 99.96
3p1f_A119 CREB-binding protein; structural genomics consorti 99.96
3fkm_X166 Signaling protein; bromodomain, malaria, structura 99.96
3rcw_A135 Bromodomain-containing protein 1; transcription, s 99.96
3uv4_A158 Second bromodomain of human transcription initiat 99.95
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 99.95
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.95
3dai_A130 ATPase family AAA domain-containing protein 2; anc 99.95
3uv5_A 265 Transcription initiation factor TFIID subunit 1; t 99.94
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.93
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 99.93
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 99.93
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.92
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.92
3aad_A 292 Transcription initiation factor TFIID subunit 1; p 99.92
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.91
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.91
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.91
2r10_A 361 Chromatin structure-remodeling complex protein RSC 99.88
2r0y_A 311 Chromatin structure-remodeling complex protein RSC 99.88
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 99.7
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8.4e-33  Score=209.10  Aligned_cols=113  Identities=34%  Similarity=0.608  Sum_probs=109.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy1228          77 LDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMF  156 (202)
Q Consensus        77 ~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif  156 (202)
                      +.+..+++.|..|++.|+++++..|+.++++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||
T Consensus         9 ~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~   88 (123)
T 2dat_A            9 PNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC   88 (123)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999998999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228         157 GNCREFNEPGSLIYEDAVNLEKVLLERVAELGP  189 (202)
Q Consensus       157 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~  189 (202)
                      .||++||+++|.++.+|..|++.|++++++++.
T Consensus        89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps  121 (123)
T 2dat_A           89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS  121 (123)
T ss_dssp             HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999998864
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Back     alignment and structure
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 202
d1wuma1118 a.29.2.1 (A:715-832) P300/CAF histone acetyltransf 1e-23
d1eqfa1139 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain 3e-23
d1eqfa2128 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain 3e-22
d1e6ia_111 a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c 1e-21
d3d7ca1102 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T 5e-21
d3dwya1114 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { 9e-21
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: P300/CAF histone acetyltransferase bromodomain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (219), Expect = 1e-23
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 14/127 (11%)

Query: 62  ASTSKSPRALTRGKYLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYY 121
           +  SK PR        D   L   L ++ + +  ++          FME       P YY
Sbjct: 2   SHMSKEPR--------DPDQLYSTLKSILQQVKSHQS------AWPFMEPVKRTEAPGYY 47

Query: 122 KVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLL 181
           +VI+ P+D+  +   ++N  Y S+   ++D + +F NC+E+N P S  Y+ A  LEK   
Sbjct: 48  EVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFF 107

Query: 182 ERVAELG 188
            ++ E G
Sbjct: 108 SKIKEAG 114
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
d3d7ca1102 GCN5 {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1e6ia_111 GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.97
d1eqfa1139 TAFII250 double bromodomain module {Human (Homo sa 99.97
d1wuma1118 P300/CAF histone acetyltransferase bromodomain {Hu 99.96
d3dwya1114 CREB-binding protein, CBP {Human (Homo sapiens) [T 99.96
d1eqfa2128 TAFII250 double bromodomain module {Human (Homo sa 99.95
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.2e-31  Score=190.05  Aligned_cols=100  Identities=28%  Similarity=0.449  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228          81 PLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCR  160 (202)
Q Consensus        81 ~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~  160 (202)
                      .|...|+.|++.|.+++.      +++|..||++..+|+|+++|++||||++|++||+++.|.++++|.+||+|||.||+
T Consensus         2 ~L~~~l~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~   75 (102)
T d3d7ca1           2 QLYTTLKNLLAQIKSHPS------AWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCR   75 (102)
T ss_dssp             HHHHHHHHHHHHHHHSGG------GGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCC------CCccCCCCChhhCcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHH
Confidence            578899999999999998      99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1228         161 EFNEPGSLIYEDAVNLEKVLLERVAE  186 (202)
Q Consensus       161 ~YN~~~s~i~~~A~~L~~~f~~~~~~  186 (202)
                      .||+++|.++.+|..|++.|++++++
T Consensus        76 ~yN~~~s~~~~~A~~l~~~f~~~~ke  101 (102)
T d3d7ca1          76 EYNPPDSEYCRCASALEKFFYFKLKE  101 (102)
T ss_dssp             HHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999875
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure