Psyllid ID: psy12371

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGDVR
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEccccccEEEEccccccccccccccEEEEEEccccEEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEccccccccEEcccccccccccccEEEEEEEEccccEEEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
mfhtdghklsgttcdyqfvstnhtrpqgrffsprypsnypadikCAYTFRARAQERIRVVLEDFKLEKGDVR
Flexible Loop (DISEMBL)
mfhtdghklsgttcDYQFVSTNHtrpqgrffsprypsnypADIKCAYTFRARAQERIRVVledfklekgdvr
Low Complexity Region (SEG)
MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGDVR
Disordered region (IsUnstruct)
***********TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFK*******
Disordered Region (DISOPRED)
MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD**
Disordered Region (DISEMBL)
MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGDVR
Disordered Region (DISPRO)
*F**DGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGDVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q60997	2085	Deleted in malignant brai	yes	N/A	0.75	0.025	0.4	3e-07
Q9UGM3	2413	Deleted in malignant brai	yes	N/A	0.472	0.014	0.391	4e-05
Q8BQH6	427	CUB domain-containing pro	no	N/A	0.972	0.163	0.342	7e-05
Q6F3F9	1165	G-protein coupled recepto	no	N/A	0.638	0.039	0.391	0.0001
Q8BZE1	841	Putative DMBT1-like prote	no	N/A	0.555	0.047	0.425	0.0002
Q9WVM6	1012	Tolloid-like protein 2 OS	no	N/A	0.861	0.061	0.253	0.0002
Q8CIZ5	1418	Deleted in malignant brai	no	N/A	0.638	0.032	0.391	0.0003
O57382	1019	Tolloid-like protein 2 OS	N/A	N/A	0.875	0.061	0.25	0.0003
Q5VXM1	449	CUB domain-containing pro	no	N/A	0.930	0.149	0.342	0.0003
Q8BUJ9	858	Low-density lipoprotein r	no	N/A	0.583	0.048	0.380	0.0004

>sp|Q60997|DMBT1_MOUSE Deleted in malignant brain tumors 1 protein OS=Mus musculus GN=Dmbt1 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 16   YQFVSTNH------TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69
            Y  VSTN+      T+P G+F SP YPSNYP +++C++     +  R+ V   D +LE G
Sbjct: 1372 YSTVSTNYSCGGLLTQPSGQFSSPHYPSNYPNNVRCSWEILVPSMNRVTVAFTDVQLEGG 1431

May play roles in mucosal defense system and cellular immune defense. May play a role in liver regeneration. May be an important factor in fate decision and differentiation of transit-amplifying ductular (oval) cells within the hepatic lineage. May function as a binding protein in saliva for the regulation of taste sensation. May play a role as an opsonin receptor for SFTPD and SPAR in macrophage tissues throughout the body, including epithelial cells lining the gastrointestinal tract (By similarity). Required for terminal differentiation of columnar epithelial cells during early embryogenesis. Displays a broad calcium-dependent binding spectrum against both Gram-positive and Gram-negative bacteria, suggesting a role in defense against bacterial pathogens. Binds to a range of poly-sulfated and poly-phosphorylated ligands which may explain its broad bacterial-binding specificity. Inhibits cytoinvasion of S.enterica. Associates with the actin cytoskeleton and is involved in its remodeling during regulated exocytosis. Interacts with pancreatic zymogens in a pH-dependent manner and may act as a Golgi cargo receptor in the regulated secretory pathway of the pancreatic acinar cell.
Mus musculus (taxid: 10090)

>sp|Q9UGM3|DMBT1_HUMAN Deleted in malignant brain tumors 1 protein OS=Homo sapiens GN=DMBT1 PE=1 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 24   TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69
            ++P G F SP YP NYP + KC +    +   R+ V+  D +LE G
Sbjct: 2013 SQPSGDFSSPFYPGNYPNNAKCVWDIEVQNNYRVTVIFRDVQLEGG 2058

May be considered as a candidate tumor suppressor gene for brain, lung, esophageal, gastric, and colorectal cancers. May play roles in mucosal defense system, cellular immune defense and epithelial differentiation. May play a role as an opsonin receptor for SFTPD and SPAR in macrophage tissues throughout the body, including epithelial cells lining the gastrointestinal tract. May play a role in liver regeneration. May be an important factor in fate decision and differentiation of transit-amplifying ductular (oval) cells within the hepatic lineage. Required for terminal differentiation of columnar epithelial cells during early embryogenesis. May function as a binding protein in saliva for the regulation of taste sensation. Binds to HIV-1 envelope protein and has been shown to both inhibit and facilitate viral transmission. Displays a broad calcium-dependent binding spectrum against both Gram-positive and Gram-negative bacteria, suggesting a role in defense against bacterial pathogens. Binds to a range of poly-sulfated and poly-phosphorylated ligands which may explain its broad bacterial-binding specificity. Inhibits cytoinvasion of S.enterica. Associates with the actin cytoskeleton and is involved in its remodeling during regulated exocytosis. Interacts with pancreatic zymogens in a pH-dependent manner and may act as a Golgi cargo receptor in the regulated secretory pathway of the pancreatic acinar cell.

Homo sapiens (taxid: 9606)

>sp|Q8BQH6|CDCP2_MOUSE CUB domain-containing protein 2 OS=Mus musculus GN=Cdcp2 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 1   MFHTDGHKLS-GTTCDYQ--FVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERI 57
           +FH+D H  S G +  YQ        T   G   SP YP+NYP +++C +  RA     +
Sbjct: 124 VFHSDKHVASRGFSAGYQKDVCGGVLTGLSGVLSSPEYPNNYPNNVECHWLIRASGPAAV 183

Query: 58  RVVLEDFKLEKGD 70
           ++V  DF++E  D
Sbjct: 184 KLVFVDFQVEGSD 196

Mus musculus (taxid: 10090)

>sp|Q6F3F9|GP126_MOUSE G-protein coupled receptor 126 OS=Mus musculus GN=Gpr126 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69
          + P G F SP YP++YP    C++T RA A   I++   DF +E+ 
Sbjct: 46 SNPSGTFTSPCYPNDYPNTQSCSWTLRAPAGYIIQITFNDFDIEEA 91

Orphan receptor. May be required for normal differentiation of promyelinating Schwann cells and for normal myelination of axons. Signals probably through G-proteins to transiently elevate cAMP levels.

Mus musculus (taxid: 10090)

>sp|Q8BZE1|DMBTL_MOUSE Putative DMBT1-like protein OS=Mus musculus PE=2 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 28  GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
           G F SPRYP NYP DI+C +        RI +++ +  LE
Sbjct: 565 GSFTSPRYPENYPTDIQCVWEIHVEKNFRIELMIPNLNLE 604

Mus musculus (taxid: 10090)

>sp|Q9WVM6|TLL2_MOUSE Tolloid-like protein 2 OS=Mus musculus GN=Tll2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 2   FHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVL 61
            H +GH      C Y+  S      +G   SP +P  YP+  +C +   + A  R+++  
Sbjct: 761 LHENGHDCKEAGCAYKISSA-----EGTLMSPNWPDKYPSRKECTWNISSTAGHRVKITF 815

Query: 62  EDFKLEK 68
            +F++E+
Sbjct: 816 SEFEIEQ 822

Protease which specifically processes pro-lysyl oxidase. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q8CIZ5|DMBT1_RAT Deleted in malignant brain tumors 1 protein OS=Rattus norvegicus GN=Dmbt1 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 24  TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69
           T P G+F SP YP +YP + +C +     +  R+ VV  D +LE G
Sbjct: 579 TLPYGQFSSPYYPGSYPNNARCLWKIFVSSMNRVTVVFTDVQLEGG 624

May play roles in mucosal defense system, cellular immune defense and epithelial differentiation (By similarity). May play a role in liver regeneration. May be an important factor in fate decision and differentiation of transit-amplifying ductular (oval) cells within the hepatic lineage. May function as a binding protein in saliva for the regulation of taste sensation. May play a role as an opsonin receptor for SFTPD and SPAR in macrophages tissues throughout the body, including epithelial cells lining the gastrointestinal tract (By similarity). Required for terminal differentiation of columnar epithelial cells during early embryogenesis. Displays a broad calcium-dependent binding spectrum against both Gram-positive and Gram-negative bacteria, suggesting a role in defense against bacterial pathogens. Binds to a range of poly-sulfated and poly-phosphorylated ligands which may explain its broad bacterial-binding specificity. Inhibits cytoinvasion of S.enterica. Associates with the actin cytoskeleton and is involved in its remodeling during regulated exocytosis. Interacts with pancreatic zymogens in a pH-dependent manner and may act as a Golgi cargo receptor in the regulated secretory pathway of the pancreatic acinar cell.

Rattus norvegicus (taxid: 10116)

>sp|O57382|TLL2_XENLA Tolloid-like protein 2 OS=Xenopus laevis GN=tll2 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 1   MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVV 60
           + H +GH      C+ + ++      +G   SP +P  YP+  +C +     A  R+++V
Sbjct: 766 ILHENGHDCKEAGCEQKLLNA-----EGTISSPNWPEKYPSRKECTWDISVTAGHRVKLV 820

Query: 61  LEDFKLEK 68
             DF++E+
Sbjct: 821 FTDFEIEQ 828

Protease which specifically processes prolysyl oxidase and maybe also chordin. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis. In embryos, inhibits the development of dorsoanterior structures and ventralizes activin-induced dorsal mesoderm in animal caps.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q5VXM1|CDCP2_HUMAN CUB domain-containing protein 2 OS=Homo sapiens GN=CDCP2 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 1   MFHTDGHKLS-GTTCDYQ--FVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERI 57
           +FH+D H  S G +  YQ        T   G   SP YP+NYP  ++C +  RA     +
Sbjct: 124 IFHSDKHVASHGFSAGYQKDVCGGVLTGLSGVLTSPEYPNNYPNSMECHWVIRAAGPAHV 183

Query: 58  RVVLEDFKLE 67
           ++V  DF++E
Sbjct: 184 KLVFVDFQVE 193

Homo sapiens (taxid: 9606)

>sp|Q8BUJ9|LRP12_MOUSE Low-density lipoprotein receptor-related protein 12 OS=Mus musculus GN=Lrp12 PE=2 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 26 PQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
          P G   SP +PS+YPA + C++  RA   E I +  +DF ++
Sbjct: 57 PSGIITSPGWPSDYPAQVNCSWLIRANPGEIITISFQDFDIQ 98

Probable receptor, which may be involved in the internalization of lipophilic molecules and/or signal transduction. May act as a tumor suppressor.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
242008980	145	hypothetical protein Phum_PHUM189490 [Pe	1.0	0.496	0.569	2e-20
345493292	618	PREDICTED: cubilin-like [Nasonia vitripe	0.972	0.113	0.577	2e-18
307203406	90	hypothetical protein EAI_00185 [Harpegna	1.0	0.8	0.561	3e-18
383859720	353	PREDICTED: deleted in malignant brain tu	0.916	0.186	0.563	3e-17
340725396	650	PREDICTED: cubilin-like [Bombus terrestr	0.958	0.106	0.549	7e-17
350403715	624	PREDICTED: cubilin-like [Bombus impatien	0.958	0.110	0.549	8e-17
332023042	179	Neuropilin and tolloid-like protein 2 [A	0.930	0.374	0.582	8e-17
328783696	635	PREDICTED: cubilin-like [Apis mellifera]	0.958	0.108	0.549	1e-16
357606909	684	hypothetical protein KGM_16882 [Danaus p	0.958	0.100	0.542	5e-15
307181876	184	hypothetical protein EAG_01056 [Camponot	0.819	0.320	0.593	2e-14

>gi|242008980|ref|XP_002425271.1| hypothetical protein Phum_PHUM189490 [Pediculus humanus corporis] gi|212509036|gb|EEB12533.1| hypothetical protein Phum_PHUM189490 [Pediculus humanus corporis]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 58/72 (80%)

Query: 1   MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVV 60
           +F TDG KL GT CDYQF+S+N++   G+F+SPRYPSNYP ++KC+Y FR + +ERI++V
Sbjct: 42  LFQTDGQKLPGTKCDYQFISSNYSLIHGKFYSPRYPSNYPKNVKCSYKFRGKFKERIQIV 101

Query: 61  LEDFKLEKGDVR 72
            E+  L+KGD+R
Sbjct: 102 FEEVTLQKGDLR 113

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493292|ref|XP_003427038.1| PREDICTED: cubilin-like [Nasonia vitripennis]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 54/71 (76%)

Query: 1   MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVV 60
           +F TDG  +    CDYQFVS+  T   GRF+SPRYPS+YP +I+C+Y FRAR++ERIR+V
Sbjct: 167 IFETDGQLMPNKMCDYQFVSSQFTLQHGRFYSPRYPSSYPENIRCSYQFRARSKERIRLV 226

Query: 61  LEDFKLEKGDV 71
            E+  LEKGD+
Sbjct: 227 FEELALEKGDI 237

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203406|gb|EFN82481.1| hypothetical protein EAI_00185 [Harpegnathos saltator]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 58/73 (79%), Gaps = 1/73 (1%)

Query: 1  MFHTDGHKLSGTTCDYQFVSTNHTRPQ-GRFFSPRYPSNYPADIKCAYTFRARAQERIRV 59
          +F T+G  + GT CD++FVS+  + PQ GRF+SPRYPS+YP +I+C+Y FRAR +ERIR+
Sbjct: 18 LFETNGVLVQGTMCDHEFVSSMQSTPQYGRFYSPRYPSSYPKNIRCSYLFRARLKERIRL 77

Query: 60 VLEDFKLEKGDVR 72
          V E+  L+KGD+R
Sbjct: 78 VFEEISLQKGDLR 90

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859720|ref|XP_003705340.1| PREDICTED: deleted in malignant brain tumors 1 protein-like [Megachile rotundata]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 54/71 (76%)

Query: 1   MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVV 60
           +F TDG  +SGT CD +FVS+   R  GRF+SPRYPS+YP +I+C+Y FRAR +ERIR+ 
Sbjct: 156 LFETDGVLVSGTMCDLEFVSSQSKRQYGRFYSPRYPSSYPKNIRCSYLFRARLKERIRLF 215

Query: 61  LEDFKLEKGDV 71
            E+  L+KGD+
Sbjct: 216 FEEISLQKGDL 226

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725396|ref|XP_003401056.1| PREDICTED: cubilin-like [Bombus terrestris]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 53/71 (74%)

Query: 1   MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVV 60
           +F TDG  + GT CD +FVS+   R  GRF+SPRYPS+YP +I+C+Y FRAR +ERIR+ 
Sbjct: 157 LFETDGVLIPGTMCDLEFVSSQSKRQYGRFYSPRYPSSYPKNIRCSYLFRARLKERIRLF 216

Query: 61  LEDFKLEKGDV 71
            E+  L+KGD+
Sbjct: 217 FEEISLQKGDL 227

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403715|ref|XP_003486882.1| PREDICTED: cubilin-like [Bombus impatiens]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 53/71 (74%)

Query: 1   MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVV 60
           +F TDG  + GT CD +FVS+   R  GRF+SPRYPS+YP +I+C+Y FRAR +ERIR+ 
Sbjct: 157 LFETDGVLIPGTMCDLEFVSSQSKRQYGRFYSPRYPSSYPKNIRCSYLFRARLKERIRLF 216

Query: 61  LEDFKLEKGDV 71
            E+  L+KGD+
Sbjct: 217 FEEISLQKGDL 227

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023042|gb|EGI63307.1| Neuropilin and tolloid-like protein 2 [Acromyrmex echinatior]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 52/67 (77%)

Query: 5  DGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDF 64
          DG  + GT CDY+FVS+  T   GRF+SPRYPS+YP +I+C+Y FRAR +ERIR+V E+ 
Sbjct: 2  DGLLVPGTMCDYEFVSSQSTPQYGRFYSPRYPSSYPKNIRCSYLFRARLKERIRLVFEEI 61

Query: 65 KLEKGDV 71
           L+KGD+
Sbjct: 62 SLQKGDL 68

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783696|ref|XP_001122665.2| PREDICTED: cubilin-like [Apis mellifera]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 53/71 (74%)

Query: 1   MFHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVV 60
           +F TDG  + GT CD +FVS+   R  GRF+SPRYPS+YP +I+C+Y FRAR +ERIR+ 
Sbjct: 158 LFETDGVLIPGTMCDLEFVSSQSKRQYGRFYSPRYPSSYPKNIRCSYLFRARLKERIRLF 217

Query: 61  LEDFKLEKGDV 71
            E+  L+KGD+
Sbjct: 218 FEEISLQKGDL 228

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357606909|gb|EHJ65280.1| hypothetical protein KGM_16882 [Danaus plexippus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 47/70 (67%)

Query: 2   FHTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVL 61
           F TDG K+SGT CDY F S       GR +SPRYPS+YP  ++C Y F AR  ERI++V 
Sbjct: 221 FETDGVKVSGTQCDYVFASQAERPSHGRLYSPRYPSSYPNSVRCNYHFNARKNERIKLVF 280

Query: 62  EDFKLEKGDV 71
           E+  L+KGDV
Sbjct: 281 EELYLQKGDV 290

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181876|gb|EFN69316.1| hypothetical protein EAG_01056 [Camponotus floridanus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 48/59 (81%)

Query: 14 CDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGDVR 72
          CD++FVS+  T   GRF+SPRYPS+YP +I+C+Y FRAR +ERIR+V E+  L+KGD+R
Sbjct: 2  CDHEFVSSQSTPHYGRFYSPRYPSSYPKNIRCSYLFRARLKERIRLVFEEILLQKGDLR 60

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
FB|FBgn0261262	1146	CG42613 [Drosophila melanogast	0.902	0.056	0.432	3.4e-09
MGI|MGI:106210	2085	Dmbt1 "deleted in malignant br	0.75	0.025	0.4	6.4e-06
MGI|MGI:3045328	427	Cdcp2 "CUB domain containing p	0.972	0.163	0.342	1.7e-05
UNIPROTKB|Q5VXM1	449	CDCP2 "CUB domain-containing p	0.930	0.149	0.342	6.5e-05
WB|WBGene00002977	906	lev-10 [Caenorhabditis elegans	0.819	0.065	0.344	7.7e-05
UNIPROTKB|F1LZ21	353	F1LZ21 "Uncharacterized protei	0.638	0.130	0.391	0.0002
FB|FBgn0004885	1464	tok "tolkin" [Drosophila melan	0.833	0.040	0.307	0.00028
UNIPROTKB|F8WEF7	1133	DMBT1 "Deleted in malignant br	0.638	0.040	0.391	0.00034
UNIPROTKB|A6NE64	185	A6NE64 "Putative DMBT1-like pr	0.541	0.210	0.384	0.0004
UNIPROTKB|F1N0N3	371	LOC507706 "Uncharacterized pro	0.861	0.167	0.323	0.00059

FB|FBgn0261262 CG42613 [Drosophila melanogaster (taxid:7227)]

 Score = 149 (57.5 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 32/74 (43%), Positives = 46/74 (62%)

Query:     2 FHTDGHKLSGT-----TCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQER 56
             F T+ +K+ GT     TC + +VS++  R  G   SPRYPSNYP+D  C+Y F A A E+
Sbjct:   649 FETE-YKIPGTAAPDGTCSFTYVSSSKKR--GELNSPRYPSNYPSDTNCSYLFLAEADEQ 705

Query:    57 IRVVLEDFKLEKGD 70
             + +V + FK+ K D
Sbjct:   706 VTIVFDHFKI-KAD 718

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:106210 Dmbt1 "deleted in malignant brain tumors 1" [Mus musculus (taxid:10090)]

 Score = 121 (47.7 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query:    16 YQFVSTNH------TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69
             Y  VSTN+      T+P G+F SP YPSNYP +++C++     +  R+ V   D +LE G
Sbjct:  1372 YSTVSTNYSCGGLLTQPSGQFSSPHYPSNYPNNVRCSWEILVPSMNRVTVAFTDVQLEGG 1431

GO:0001824 "blastocyst development" evidence=IMP

GO:0001833 "inner cell mass cell proliferation" evidence=IDA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IDA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=ISO

GO:0030858 "positive regulation of epithelial cell differentiation" evidence=IDA

GO:0031012 "extracellular matrix" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0035375 "zymogen binding" evidence=IDA

GO:0042589 "zymogen granule membrane" evidence=IDA

GO:0051636 "Gram-negative bacterial cell surface binding" evidence=IDA

GO:0051637 "Gram-positive bacterial cell surface binding" evidence=IDA

MGI|MGI:3045328 Cdcp2 "CUB domain containing protein 2" [Mus musculus (taxid:10090)]

 Score = 109 (43.4 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query:     1 MFHTDGHKLS-GTTCDYQ--FVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERI 57
             +FH+D H  S G +  YQ        T   G   SP YP+NYP +++C +  RA     +
Sbjct:   124 VFHSDKHVASRGFSAGYQKDVCGGVLTGLSGVLSSPEYPNNYPNNVECHWLIRASGPAAV 183

Query:    58 RVVLEDFKLEKGD 70
             ++V  DF++E  D
Sbjct:   184 KLVFVDFQVEGSD 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5VXM1 CDCP2 "CUB domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query:     1 MFHTDGHKLS-GTTCDYQ--FVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERI 57
             +FH+D H  S G +  YQ        T   G   SP YP+NYP  ++C +  RA     +
Sbjct:   124 IFHSDKHVASHGFSAGYQKDVCGGVLTGLSGVLTSPEYPNNYPNSMECHWVIRAAGPAHV 183

Query:    58 RVVLEDFKLE 67
             ++V  DF++E
Sbjct:   184 KLVFVDFQVE 193

GO:0005576 "extracellular region" evidence=IEA

WB|WBGene00002977 lev-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 107 (42.7 bits), Expect = 7.7e-05, P = 7.7e-05
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query:     6 GHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFK 65
             G  + G  C   F+  +  R  G  +SP YP  YP ++ C+Y  +A   ERIR+   DF 
Sbjct:   171 GEPVGGKKCS--FIIDSSDRKIGTLYSPTYPGTYPHNMHCSYLMKAGRGERIRLFFTDFD 228

Query:    66 L 66
             +
Sbjct:   229 I 229

GO:0016021 "integral to membrane" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IMP

GO:0043196 "varicosity" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|F1LZ21 F1LZ21 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 98 (39.6 bits), Expect = 0.00020, P = 0.00020
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query:    24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69
             T P G+F SP YP +YP + +C +     +  R+ VV  D +LE G
Sbjct:    22 TLPSGQFSSPYYPGSYPNNARCLWKIFVSSMNRVTVVFTDVQLEGG 67

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

FB|FBgn0004885 tok "tolkin" [Drosophila melanogaster (taxid:7227)]

 Score = 104 (41.7 bits), Expect = 0.00028, P = 0.00028
 Identities = 20/65 (30%), Positives = 31/65 (47%)

Query:     3 HTDGHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLE 62
             H +GH      C Y+      + P G  FSP YP +YP +  C + F      RI+++  
Sbjct:  1147 HENGHDCKEGECKYEI-----SAPFGTIFSPNYPDSYPPNADCVWHFITTPGHRIKLIFN 1201

Query:    63 DFKLE 67
             +F +E
Sbjct:  1202 EFDVE 1206

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0007415 "defasciculation of motor neuron axon" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IDA

GO:0016485 "protein processing" evidence=IDA

GO:0007411 "axon guidance" evidence=IMP

UNIPROTKB|F8WEF7 DMBT1 "Deleted in malignant brain tumors 1 protein" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 0.00034, P = 0.00034
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query:    24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69
             ++P G F SP YP NYP + KC +    +   R+ V+  D +LE G
Sbjct:   733 SQPSGDFSSPFYPGNYPNNAKCVWDIEVQNNYRVTVIFRDVQLEGG 778

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|A6NE64 A6NE64 "Putative DMBT1-like protein" [Homo sapiens (taxid:9606)]

 Score = 90 (36.7 bits), Expect = 0.00040, P = 0.00040
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query:    28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKL 66
             G F SP+YP NYP DI+C +     A+  I +++   K+
Sbjct:   135 GSFSSPQYPENYPTDIQCVWEIHMGAKFHIELIIPSLKV 173

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1N0N3 LOC507706 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 94 (38.1 bits), Expect = 0.00059, P = 0.00059
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query:     6 GHKLS--GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRV-VLE 62
             G++L   G +C  +  S   T P G   S  YP  YPAD++C Y+ R      + +  LE
Sbjct:   178 GYELQPDGRSCQAECSSELFTEPSGYISSLEYPRPYPADLRCNYSIRVERGHTLHLQFLE 237

Query:    63 DFKLE 67
              F+++
Sbjct:   238 PFEID 242

GO:0005509 "calcium ion binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	72
cd00041	113	cd00041, CUB, CUB domain; extracellular domain; pr	2e-09
smart00042	102	smart00042, CUB, Domain first found in C1r, C1s, u	7e-08
pfam00431	110	pfam00431, CUB, CUB domain	4e-07

>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

 Score = 49.3 bits (118), Expect = 2e-09
 Identities = 20/48 (41%), Positives = 25/48 (52%)

Query: 20 STNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
           T      G   SP YP+NYP ++ C +T  A    RIR+  EDF LE
Sbjct: 3  GTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLE 50

Length = 113

>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

 Score = 45.1 bits (107), Expect = 7e-08
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
          G   SP YP +YP ++ C +T RA    RI +   DF LE  D
Sbjct: 1  GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSD 43

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain. Length = 102

>gnl|CDD|215916 pfam00431, CUB, CUB domain

 Score = 43.1 bits (102), Expect = 4e-07
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 14 CDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
          C         T   G   SP YP++YP +  C +T RA    RI +  +DF LE  D
Sbjct: 1  CGGVL-----TESSGSITSPNYPNSYPPNKDCVWTIRAPPGYRISLTFQDFDLEDHD 52

Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
PF00431	110	CUB: CUB domain CUB domain entry Spermadhesins fam	99.61
cd00041	113	CUB CUB domain; extracellular domain; present in p	99.54
smart00042	102	CUB Domain first found in C1r, C1s, uEGF, and bone	99.46
KOG4292|consensus	454		98.78
KOG4586|consensus	156		98.28
KOG4292|consensus	454		97.67
PF02408	120	CUB_2: CUB-like domain; InterPro: IPR003366 This d	95.54

>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork

Probab=99.61  E-value=4e-15  Score=79.69  Aligned_cols=51  Identities=39%  Similarity=0.756  Sum_probs=44.4

Q ss_pred             CCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         14 CDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        14 C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      |++.+     ....|.|.||+||..|+.+..|.|.|.++++.+|.|.|..|+|+..
T Consensus         1 Cg~~~-----~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~   51 (110)
T PF00431_consen    1 CGGRL-----TNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESS   51 (110)
T ss_dssp             SEEEE-----CSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--T
T ss_pred             CcCEE-----ECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceee
Confidence            78886     6899999999999999999999999999999999999999999854

; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....

>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

Probab=99.54  E-value=3.8e-14  Score=76.08  Aligned_cols=51  Identities=39%  Similarity=0.813  Sum_probs=45.8

Q ss_pred             CCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeec
Q psy12371         14 CDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEK   68 (72)
Q Consensus        14 C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~   68 (72)
                      |++.+.    ....|.|.||+||..|+++..|.|.|+++++.+|.|.|..|+|+.
T Consensus         1 C~~~~~----~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~   51 (113)
T cd00041           1 CGGTLT----ASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLES   51 (113)
T ss_pred             CCCEEc----cCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCccccc
Confidence            778874    224999999999999999999999999999999999999999973

>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

Probab=99.46  E-value=2.5e-13  Score=72.15  Aligned_cols=42  Identities=40%  Similarity=0.841  Sum_probs=39.5

Q ss_pred             EEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        28 g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      |.|.||+||..||++..|.|.|+++++.+|.|.|..|+|+..
T Consensus         1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~   42 (102)
T smart00042        1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESS   42 (102)
T ss_pred             CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCC
Confidence            679999999999999999999999999999999999999853

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.

>KOG4292|consensus

Probab=98.78  E-value=2e-08  Score=65.52  Aligned_cols=55  Identities=24%  Similarity=0.596  Sum_probs=48.8

Q ss_pred             CCCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         10 SGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        10 ~~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      ..+.|+.+++     ...|.+.||+||..|+++..|+|++.++.++.|.+.|+.+-++.+
T Consensus       288 ~~~~C~~~~~-----~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~~s  342 (454)
T KOG4292|consen  288 QISDCNRTYH-----GKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIENS  342 (454)
T ss_pred             ccccccccee-----cceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccchhh
Confidence            3588998884     589999999999999999999999999999999999888877654

>KOG4586|consensus

Probab=98.28  E-value=3e-06  Score=47.62  Aligned_cols=46  Identities=26%  Similarity=0.621  Sum_probs=41.0

Q ss_pred             CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeE-EEeecC
Q psy12371         24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLED-FKLEKG   69 (72)
Q Consensus        24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~-f~le~~   69 (72)
                      .+..+.++||+||..||++.+|...|.+...+-|.+.|.. |.||++
T Consensus        46 ~~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEps   92 (156)
T KOG4586|consen   46 LQNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEPS   92 (156)
T ss_pred             ecccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEeccc
Confidence            4667899999999999999999999999999889999986 778754

>KOG4292|consensus

Probab=97.67  E-value=4.9e-05  Score=50.10  Aligned_cols=51  Identities=24%  Similarity=0.441  Sum_probs=44.0

Q ss_pred             CCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEee
Q psy12371         13 TCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE   67 (72)
Q Consensus        13 ~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le   67 (72)
                      .|..++.    ++..|.+.+|+||..|..+.-|.|.+.+++++++.|++..+++.
T Consensus       168 ~~~~t~~----~q~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~  218 (454)
T KOG4292|consen  168 TYNITFT----TQNSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLA  218 (454)
T ss_pred             ccceeec----CcccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCC
Confidence            4555663    56679999999999999999999999999999999999988664

>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins

Probab=95.54  E-value=0.037  Score=30.44  Aligned_cols=27  Identities=22%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             CCCCCCCceEEEEEcCCCCeEEEEEeE
Q psy12371         37 SNYPADIKCAYTFRARAQERIRVVLED   63 (72)
Q Consensus        37 ~~y~~~~~C~w~i~~~~~~~i~L~f~~   63 (72)
                      ..+|.+..|.|.|.+|.|.-++|.+..
T Consensus        36 ~~~p~n~~C~y~i~iP~G~~a~v~~~~   62 (120)
T PF02408_consen   36 PQFPANQNCTYQINIPKGYYAKVTLSA   62 (120)
T ss_pred             cccCCCCceEEEEEcCCceEEEEEEEE
Confidence            357889999999999999988887743

The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	72
2qqm_A	450	Crystal Structure Of The A2b1b2 Domains From Human		6e-04
4gz9_A	577	Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2		6e-04

>pdb|2QQM|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human Neuropilin-1 Length = 450

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 20 STNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
          S N+T P G   SP +P  YP  ++C Y   A     I +  E F LE
Sbjct: 12 SQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLE 59

>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2) Length = 577

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 20  STNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEK 68
           S N+T P G   SP +P  YP  ++C Y   A     I +  E F LE+
Sbjct: 130 SQNYTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQ 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	1e-10
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	5e-10
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	6e-09
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	1e-08
3dem_A	278	Complement factor MAsp-3; complement system, innat	2e-10
3dem_A	278	Complement factor MAsp-3; complement system, innat	4e-09
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	3e-10
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	3e-08
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	3e-10
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	4e-10
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	9e-10
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	6e-10
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	3e-07
1nzi_A	159	Complement C1S component; calcium, innate immunity	8e-10
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	2e-09
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	5e-09
1szb_A	170	Mannose binding lectin-associated serine protease-	7e-09
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	1e-08
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	4e-06
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	4e-05
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	9e-05

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 54.1 bits (130), Expect = 1e-10
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 7/75 (9%)

Query: 2   FHTD------GHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQE 55
           F +D      G               N T   G F SP YP  Y    +C +  ++    
Sbjct: 212 FKSDQIDTRSGFSAYWDGSSTGC-GGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGS 270

Query: 56  RIRVVLEDFKLEKGD 70
              +  +DF LE   
Sbjct: 271 AFELEFKDFHLEHHP 285

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 52.2 bits (125), Expect = 5e-10
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 22 NHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
            T   G   SP +P+ YP  I C +    +    I ++ E F LE   
Sbjct: 4  ILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFHY 52

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 49.1 bits (117), Expect = 6e-09
 Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 8/72 (11%)

Query: 2   FHTD------GHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQE 55
             TD      G K          V  N T   G   S  YP+ Y  +  C +T RA    
Sbjct: 328 LRTDEGQQGRGFKAEYRQTCENVVIVNQT--YGILESIGYPNPYSENQHCNWTIRATTGN 385

Query: 56  RIRVVLEDFKLE 67
            +      F LE
Sbjct: 386 TVNYTFLAFDLE 397

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 2   FHTDGHKLSG-------TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQ 54
           F TD                       ++T   G F SP +P+NYP + +C Y    R  
Sbjct: 93  FVTDSDLAYEGFLINYEAISAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTG 152

Query: 55  ERIRVVLEDFKLEKGD 70
           + I V   +F LE+  
Sbjct: 153 QLIAVHFTNFSLEEAI 168

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 53.0 bits (127), Expect = 2e-10
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
              G+  SP YP +YP+D +  +        RI++    F LE   
Sbjct: 6  NNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSY 52

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 49.5 bits (118), Expect = 4e-09
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 11  GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVV-LEDFKLEKG 69
             TC  +      T+  G   SP +P+ YP   +C YT        + +   + F +E  
Sbjct: 159 NRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDH 218

Query: 70  D 70
            
Sbjct: 219 P 219

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 53.1 bits (127), Expect = 3e-10
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
              G+  SP YP +YP+D +  +        RI++    F LE   
Sbjct: 6  NNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSY 52

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 47.3 bits (112), Expect = 3e-08
 Identities = 14/60 (23%), Positives = 22/60 (36%)

Query: 11  GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
             TC  +      T+  G   SP +P+ YP   +C YT        + +  ED    +  
Sbjct: 159 NRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDH 218

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens} Length = 149

 Score = 51.2 bits (123), Expect = 3e-10
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 22 NHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
            T P+  F SP +P+ Y  +  C +  R +  +RI +   DF LE   
Sbjct: 10 VFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDP 58

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 52.3 bits (125), Expect = 4e-10
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
          GR  SP +P  Y      ++T  A    R+R+    F LE   
Sbjct: 9  GRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSY 51

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 51.5 bits (123), Expect = 9e-10
 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 11  GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVV-LEDFKLEKG 69
             TC         T   G   SP YP  YP    CAY  R      I +  +E F +E  
Sbjct: 158 KHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH 217

Query: 70  D 70
            
Sbjct: 218 P 218

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 52.3 bits (125), Expect = 6e-10
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 2   FHTDGH-KLSGTTCDYQFVSTNH-------TRPQGRFFSPRYPSNYPADIKCAYTFRARA 53
           F +D   + +G +  Y+   T         T P G   SP +P  YP ++ C +T  A+ 
Sbjct: 102 FTSDYARQGAGFSLRYEIFKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKP 161

Query: 54  QERIRVVLEDFKLEKGD 70
           +  I +    F LE   
Sbjct: 162 KMEIILQFLIFDLEHDP 178

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 44.6 bits (105), Expect = 3e-07
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 23 HTRPQGRFFSPRYPSNYPADIKCAYTFRA-RAQERIRVVLEDFKLE 67
          +++  G   SP YP +YP+   C +   A    ++I +        
Sbjct: 11 NSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEI 56

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score = 50.6 bits (121), Expect = 8e-10
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 26 PQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
            G   SP YP  YP++++ ++         I +      +E  +
Sbjct: 4  MYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSE 48

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A Length = 115

 Score = 48.8 bits (117), Expect = 2e-09
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 23 HTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLED-FKLEKGD 70
           T+  G   SP YP+ YP   +C+YT        + +  ED F +E   
Sbjct: 9  FTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHP 57

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Length = 460

 Score = 49.7 bits (118), Expect = 5e-09
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 22 NHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEK 68
          N T P G   SP +P  YP ++ C +T  A+ +  I +    F LE 
Sbjct: 11 NFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEH 57

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 170

 Score = 48.4 bits (115), Expect = 7e-09
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 26 PQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
            GR  SP +P  Y  D +  +T  A    R+R+    F LE   
Sbjct: 11 VFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSH 55

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Length = 450

 Score = 48.5 bits (115), Expect = 1e-08
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 10 SGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
           G  C   +     T P G   SP +P  YP  ++C Y   A     I +  E F LE
Sbjct: 7  RGPECSQNY-----TTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLE 59

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 116

 Score = 40.1 bits (94), Expect = 4e-06
 Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 5/44 (11%)

Query: 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
              G   +     N      C +T   +  +++R+ +    L 
Sbjct: 14 KDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA 52

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 109

 Score = 37.4 bits (87), Expect = 4e-05
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 5/53 (9%)

Query: 15 DYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
          DY       T   G  F+ + P        C +T +   + ++ V +    L 
Sbjct: 2  DYHACGGRLTDDYGTIFTYKGPKTE-----CVWTLQVDPKYKLLVSIPTLNLT 49

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1 Length = 114

 Score = 36.5 bits (85), Expect = 9e-05
 Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 5/44 (11%)

Query: 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
              G   +      Y     C +T +   +  +RV ++  +L 
Sbjct: 15 KEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	99.72
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	99.7
1szb_A	170	Mannose binding lectin-associated serine protease-	99.65
1nzi_A	159	Complement C1S component; calcium, innate immunity	99.63
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	99.59
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.58
3dem_A	278	Complement factor MAsp-3; complement system, innat	99.57
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.56
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	99.53
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.52
3dem_A	278	Complement factor MAsp-3; complement system, innat	99.52
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.52
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	99.51
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	99.5
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	99.49
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.47
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	99.45
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.41
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	99.41
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	99.4
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.37

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}

Probab=99.72  E-value=4.2e-17  Score=92.05  Aligned_cols=54  Identities=31%  Similarity=0.631  Sum_probs=50.1

Q ss_pred             CCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         11 GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        11 ~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      ...|++.+     +...|.|.||+||..||++..|.|.|+++.+++|+|.|.+|+||.+
T Consensus         4 ~~~Cgg~l-----~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~~   57 (149)
T 2wno_A            4 AKECGGVF-----TDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDD   57 (149)
T ss_dssp             CSCCCEEE-----CSSEEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCCC
T ss_pred             CCCCCCEE-----ECCceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecCC
Confidence            46799998     5778999999999999999999999999999999999999999964

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A

Probab=99.70  E-value=2.2e-17  Score=89.29  Aligned_cols=54  Identities=28%  Similarity=0.575  Sum_probs=48.6

Q ss_pred             CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEe-EEEeecC
Q psy12371         12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLE-DFKLEKG   69 (72)
Q Consensus        12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~-~f~le~~   69 (72)
                      ..|++.+.    +...|.|.||+||..||++..|.|.|+++++++|+|.|. .|+||..
T Consensus         2 ~~Cgg~~~----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~   56 (115)
T 3poj_A            2 VECSGNLF----TQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDH   56 (115)
T ss_dssp             -CEEEEEE----CSSEEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCC
T ss_pred             eECCCceE----cCCCEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccC
Confidence            46888864    688999999999999999999999999999999999999 5999964

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.65  E-value=3.5e-16  Score=89.54  Aligned_cols=46  Identities=30%  Similarity=0.526  Sum_probs=44.2

Q ss_pred             CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      ++..|.|.||+||..||++..|.|.|+++++++|+|.|.+|+||.+
T Consensus         9 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~   54 (170)
T 1szb_A            9 EPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS   54 (170)
T ss_dssp             CCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             cCCCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCC
Confidence            7889999999999999999999999999999999999999999964

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.63  E-value=9e-16  Score=86.78  Aligned_cols=46  Identities=20%  Similarity=0.492  Sum_probs=43.6

Q ss_pred             CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      ++..|.|.||+||..||++..|.|.|+++.+++|+|.|.+|+||.+
T Consensus         2 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~   47 (159)
T 1nzi_A            2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELS   47 (159)
T ss_dssp             CCSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             CCCCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecCC
Confidence            5778999999999999999999999999999999999999999964

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1

Probab=99.59  E-value=3e-15  Score=96.07  Aligned_cols=55  Identities=33%  Similarity=0.704  Sum_probs=50.0

Q ss_pred             CCCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         10 SGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        10 ~~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      .+..|++.+     ....|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||.+
T Consensus         7 ~~~~Cg~~~-----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~   61 (450)
T 2qqm_A            7 RGPECSQNY-----TTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPD   61 (450)
T ss_dssp             --CTTCEEE-----CSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC
T ss_pred             cCCCCCCeE-----eCCcEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEec
Confidence            357899998     5779999999999999999999999999999999999999999964

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}

Probab=99.58  E-value=6.6e-15  Score=94.78  Aligned_cols=53  Identities=32%  Similarity=0.699  Sum_probs=49.1

Q ss_pred             CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      ..|++.+     +...|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||.+
T Consensus         6 ~~Cg~~l-----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~   58 (460)
T 2qqo_A            6 EDCSKNF-----TSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHD   58 (460)
T ss_dssp             -CCCEEE-----CSSEEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC
T ss_pred             CCCCCEE-----eCCceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEcccc
Confidence            4699998     5789999999999999999999999999999999999999999963

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=99.57  E-value=3.4e-15  Score=90.62  Aligned_cols=54  Identities=28%  Similarity=0.600  Sum_probs=48.3

Q ss_pred             CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeE-EEeecC
Q psy12371         12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLED-FKLEKG   69 (72)
Q Consensus        12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~-f~le~~   69 (72)
                      ..|++.+.    +...|.|.||+||..||++..|.|.|+++.+++|.|.|.+ |+||..
T Consensus       164 ~~Cgg~~~----~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~f~le~~  218 (278)
T 3dem_A          164 VECSDNLF----TQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDH  218 (278)
T ss_dssp             CCCCCCCB----CSSEEEEESTTTTSCCCSSCEEEEEEECCTTCCEEEEECSCCBBCCC
T ss_pred             ccCCCcee----cCCccceeCCCCCCCCCCcCeEEEEEEeCCCcEEEEEEccccccccC
Confidence            56776543    6889999999999999999999999999999999999998 999863

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.56  E-value=4.9e-15  Score=92.64  Aligned_cols=46  Identities=28%  Similarity=0.558  Sum_probs=44.2

Q ss_pred             CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      ++..|.|+||+||..||++..|.|.|+++++++|+|.|.+|+||.+
T Consensus         6 t~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~l~F~~f~lE~~   51 (361)
T 4aqb_A            6 NNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS   51 (361)
T ss_dssp             ESSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             eCCeEEEeCCCCCCCCCCCCeEEEEEEECCCCEEEEEEeEEEecCC
Confidence            6889999999999999999999999999999999999999999975

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=99.53  E-value=2.1e-14  Score=87.65  Aligned_cols=54  Identities=31%  Similarity=0.514  Sum_probs=48.2

Q ss_pred             CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEe-EEEeecC
Q psy12371         12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLE-DFKLEKG   69 (72)
Q Consensus        12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~-~f~le~~   69 (72)
                      ..|++.+.    +...|.|.||+||..||++..|.|.|+++++++|.|.|. +|+||..
T Consensus       163 ~~Cg~~~~----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~~f~le~~  217 (286)
T 1nt0_A          163 ALCSGQVF----TGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH  217 (286)
T ss_dssp             ECCEEEEE----CSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC
T ss_pred             ccccCcee----cCCceEEeCCCCCCCCCCCCEEEEEEECCCceEEEEEEeceEEeccC
Confidence            36877743    688999999999999999999999999999999999996 7999864

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.52  E-value=2e-14  Score=94.82  Aligned_cols=52  Identities=33%  Similarity=0.718  Sum_probs=48.0

Q ss_pred             CCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         13 TCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        13 ~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      .|++.+     +...|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||.+
T Consensus       128 ~C~~~~-----~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~g~~I~L~F~~F~lE~~  179 (577)
T 4gz9_A          128 ECSQNY-----TAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQD  179 (577)
T ss_dssp             EEEEEE-----CSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC
T ss_pred             ccceee-----cCCCccccCCCCCCCCCCCceEEEEEEECCCCEEEEEEEEEEeeec
Confidence            477776     6889999999999999999999999999999999999999999864

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=99.52  E-value=2.3e-14  Score=86.96  Aligned_cols=46  Identities=28%  Similarity=0.558  Sum_probs=43.4

Q ss_pred             CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      +...|.|.||+||..||++..|.|.|+++++++|+|.|.+|+||.+
T Consensus         6 t~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~   51 (278)
T 3dem_A            6 NNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS   51 (278)
T ss_dssp             -CCEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             ccCCceEeCCCCCCCCcCCCcEEEEEEECCCCEEEEEEEEEEeCCC
Confidence            6889999999999999999999999999999999999999999974

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.52  E-value=4.1e-14  Score=93.12  Aligned_cols=52  Identities=33%  Similarity=0.713  Sum_probs=46.7

Q ss_pred             CCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         13 TCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        13 ~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      .|++.+     +..+|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||.+
T Consensus       126 ~Cg~~~-----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~F~~f~le~~  177 (579)
T 2qqk_A          126 DCSKNF-----TSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHD  177 (579)
T ss_dssp             CCCCEE-----CCSEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEEC---
T ss_pred             ccccee-----ccCCceecCCCCcccCCCCCeEEEEEEcCCCCEEEEEEEEEEeecc
Confidence            499887     5789999999999999999999999999999999999999999963

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=99.51  E-value=3.7e-14  Score=86.62  Aligned_cols=46  Identities=28%  Similarity=0.497  Sum_probs=44.0

Q ss_pred             CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      ++..|.|.||+||..||++..|.|.|+++++++|+|.|..|+||.+
T Consensus         5 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~L~F~~f~le~~   50 (286)
T 1nt0_A            5 EPVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELS   50 (286)
T ss_dssp             CCCEEEEECTTTTSCCCSSCCEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             cCCCceEeCCCCCccCcCCCcEEEEEEcCCCCEEEEEEEEEEecCC
Confidence            6889999999999999999999999999999999999999999964

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=99.50  E-value=7.4e-14  Score=89.62  Aligned_cols=66  Identities=26%  Similarity=0.466  Sum_probs=55.0

Q ss_pred             CcccCCcc-cCC------CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371          1 MFHTDGHK-LSG------TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus         1 ~f~~~~~~-~~~------~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      +|++|... ..|      ..|++.+.   .....|.|.||+||..||++..|.|.|+++++++|+|.|..|+||.+
T Consensus       327 ~f~sd~~~~~~GF~a~y~~~C~~~~~---~~~~~G~i~Sp~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~f~le~~  399 (457)
T 3kq4_B          327 KLRTDEGQQGRGFKAEYRQTCENVVI---VNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEHH  399 (457)
T ss_dssp             EEECCSSCCCCCCEEEEEECCTTEEE---CSCSSEEEECTTTTSCCCSSCEEEEEEECSTTCCCEEEEEEEECCCC
T ss_pred             EEEeCCcccCCeEEEEEEeecCCccc---ccceeeEEecCCCCccCCCCCceEEEEEcCCCCEEEEEEeEEEEccC
Confidence            36777643 233      47888874   24567999999999999999999999999999999999999999964

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=99.49  E-value=1.6e-14  Score=92.71  Aligned_cols=51  Identities=29%  Similarity=0.583  Sum_probs=48.1

Q ss_pred             CCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         14 CDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        14 C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      |++.+     ++..|.|.||+||..||++..|.|.|.++++++|+|.|..|+||.+
T Consensus         1 CGg~l-----~~~~G~i~SP~yP~~Y~~~~~C~w~I~~~~g~~i~L~f~~f~le~~   51 (457)
T 3kq4_B            1 CGEIL-----TESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFH   51 (457)
T ss_dssp             CCCEE-----CSSEEECCCSSTTSCCCSSCCCEEEEECCSSEEEEECCSCCCCCCC
T ss_pred             CCCeE-----ecCCEEEeCCCCCCCCCCCCcEEEEEEcCCCCEEEEEEEeeecccC
Confidence            88887     6889999999999999999999999999999999999999999964

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.47  E-value=7.6e-14  Score=92.07  Aligned_cols=55  Identities=27%  Similarity=0.541  Sum_probs=47.3

Q ss_pred             CCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCC-CeEEEEEe-EEEeecC
Q psy12371         11 GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQ-ERIRVVLE-DFKLEKG   69 (72)
Q Consensus        11 ~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~-~~i~L~f~-~f~le~~   69 (72)
                      ...|++.+.    ....|.|+||+||..||++..|.|.|++|.+ .+|.|.|. .|+||..
T Consensus         6 ~~~CGg~l~----~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~~~~~I~L~F~~~f~le~~   62 (577)
T 4gz9_A            6 SDKCGGTIK----IENPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLEDR   62 (577)
T ss_dssp             -CCSSEEEE----CSSCEEEECTTTTTCCCSSCEEEEEEECSSTTCCEEEEECSCCBCCCG
T ss_pred             cCCCCCEEE----cCCCEEEeCCCCCCCCCCCCeEEEEEEECCCCcEEEEEEEeeeeecCC
Confidence            357999985    4567999999999999999999999999876 68999997 6999853

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.45  E-value=4e-13  Score=72.13  Aligned_cols=46  Identities=17%  Similarity=0.414  Sum_probs=42.3

Q ss_pred             CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEee
Q psy12371         12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE   67 (72)
Q Consensus        12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le   67 (72)
                      ..|++.+     +...|.|.||     ||++..|.|.|+++++++|.|.|.+|+++
T Consensus         4 ~~Cgg~l-----~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~   49 (109)
T 1spp_A            4 HACGGRL-----TDDYGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNLT   49 (109)
T ss_dssp             CSSCEEE-----ECSEEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEECC
T ss_pred             cCCCCEE-----eCCcEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeecc
Confidence            5799998     4778999998     88999999999999999999999999985

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.41  E-value=4.6e-13  Score=88.15  Aligned_cols=55  Identities=25%  Similarity=0.616  Sum_probs=47.0

Q ss_pred             CCCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCC-CCeEEEEEe-EEEeec
Q psy12371         10 SGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARA-QERIRVVLE-DFKLEK   68 (72)
Q Consensus        10 ~~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~-~~~i~L~f~-~f~le~   68 (72)
                      +...|++.+.    ....|.|.||+||..||++..|.|.|.++. +++|.|.|. .|+||.
T Consensus         2 p~~~Cgg~~~----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~~~~~I~l~F~~~f~le~   58 (579)
T 2qqk_A            2 PDPPCGGRLN----SKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEK   58 (579)
T ss_dssp             ---CCCEEEE----TTSCEEEECTTTTSCCCSSCCEEEEEECSSTTSEEEEEECSCCBCCC
T ss_pred             CCCCCCCEEE----eCCCeEEeCCCCCCCCcCCCEEEEEEEECCCCcEEEEEEeccccccc
Confidence            3467999985    346899999999999999999999999996 578999999 899985

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.41  E-value=8.4e-13  Score=71.50  Aligned_cols=46  Identities=13%  Similarity=0.346  Sum_probs=42.4

Q ss_pred             CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEee
Q psy12371         12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE   67 (72)
Q Consensus        12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le   67 (72)
                      ..|++.+     +...|.|.||     ||++..|.|.|+++++++|.|.|.+|+|+
T Consensus         7 ~~Cgg~l-----~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~   52 (116)
T 1spp_B            7 DECGRVI-----KDTSGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNLA   52 (116)
T ss_dssp             GGTTEEE-----CCSEEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred             CCCCCEE-----eCCceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCccc
Confidence            6799998     5778999998     78999999999999999999999999985

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1

Probab=99.40  E-value=1.7e-12  Score=70.07  Aligned_cols=47  Identities=19%  Similarity=0.423  Sum_probs=42.8

Q ss_pred             CCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEee
Q psy12371         11 GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE   67 (72)
Q Consensus        11 ~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le   67 (72)
                      ...|++.+     +...|.|.||     ||++..|.|.|+++++++|+|.|.+|+|+
T Consensus         7 ~~~Cgg~l-----~~~~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l~   53 (114)
T 1sfp_A            7 NTNCGGIL-----KEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN   53 (114)
T ss_dssp             ECSSCEEE-----CCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred             CCCCCCeE-----ECCcEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeeee
Confidence            46899998     5778999997     77899999999999999999999999985

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.37  E-value=9.4e-13  Score=82.31  Aligned_cols=52  Identities=31%  Similarity=0.608  Sum_probs=45.2

Q ss_pred             CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeE-EEeec
Q psy12371         12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLED-FKLEK   68 (72)
Q Consensus        12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~-f~le~   68 (72)
                      ..|++.+     +...|.|.||+||..||++..|.|.|.++.+++|.|.|.+ |++|.
T Consensus       165 ~~c~~~~-----~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~~~~e~  217 (361)
T 4aqb_A          165 ECSDNLF-----TQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIED  217 (361)
T ss_dssp             CCCCCCB-----CSSEEEEESTTTTSCCCSSCEEEEEEECCTTCEEEEEECSCCBBCC
T ss_pred             ccccceE-----eCCCcEEecCCCCCCCCCCceeeEEeeeccCcEEEEEEeecccccC
Confidence            4455555     6889999999999999999999999999999999999987 56654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d2qqma3	108	b.23.1.1 (A:156-263) Mannose-binding protein assoc	1e-06
d1szba1	121	b.23.1.1 (A:3-123) Mannose-binding protein associa	2e-06
d1nt0a2	114	b.23.1.1 (A:165-278) Mannose-binding protein assoc	7e-05
d1nzia1	117	b.23.1.1 (A:1-117) Complement C1S component {Human	2e-04

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-06
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
          G   SP +P  YP  ++C Y   A     I +  E F LE   
Sbjct: 1  GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDS 43

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
          GR  SP +P  Y  D +  +T  A    R+R+    F LE
Sbjct: 11 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLE 50

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 114

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.7 bits (81), Expect = 7e-05
 Identities = 12/28 (42%), Positives = 12/28 (42%)

Query: 23 HTRPQGRFFSPRYPSNYPADIKCAYTFR 50
           T   G   SP YP  YP    CAY  R
Sbjct: 6  FTGRSGFLSSPEYPQPYPKLSSCAYNIR 33

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 2e-04
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKL 66
          G   SP YP  YP++++ ++         I +      +
Sbjct: 6  GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDI 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1nt0a2	114	Mannose-binding protein associated serine protease	99.68
d1szba1	121	Mannose-binding protein associated serine protease	99.64
d1nzia1	117	Complement C1S component {Human (Homo sapiens) [Ta	99.64
d2qqma3	108	Mannose-binding protein associated serine protease	99.64
d1sppa_	109	Major seminal plasma glycoprotein PSP-I {Pig (Sus	99.45
d1sppb_	112	Major seminal plasma glycoprotein PSP-II {Pig (Sus	99.44
d1sfpa_	111	Acidic seminal fluid protein (ASFP) {Cow (Bos taur	99.35

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=4.1e-17  Score=86.90  Aligned_cols=52  Identities=33%  Similarity=0.538  Sum_probs=46.3

Q ss_pred             CCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEe-EEEeecC
Q psy12371         14 CDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLE-DFKLEKG   69 (72)
Q Consensus        14 C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~-~f~le~~   69 (72)
                      |++.+.    ++..|.|.||+||..||++..|.|.|.++++++|+|.|. .|+||..
T Consensus         1 Cgg~~~----~~~~G~i~SP~yP~~Y~~~~~C~w~I~~p~g~~i~l~F~~~f~le~~   53 (114)
T d1nt0a2           1 CSGQVF----TGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH   53 (114)
T ss_dssp             CEEEEE----CSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC
T ss_pred             CcCCcC----cCCCEEEECCCCCCCCCCCCeEEEEEEeCCCCceeeEEeeeeccccc
Confidence            888754    688899999999999999999999999999999999995 5888743

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.7e-16  Score=84.19  Aligned_cols=45  Identities=31%  Similarity=0.538  Sum_probs=42.4

Q ss_pred             CCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         25 RPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        25 ~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      ...|.|+||+||..||++..|.|.|+++.+++|.|.|.+|+||.+
T Consensus         8 ~~~G~i~SP~yP~~Yp~~~~C~W~I~~p~g~~I~l~f~~fdle~~   52 (121)
T d1szba1           8 PVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS   52 (121)
T ss_dssp             CCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             CCCeEEeCCCCCCCCCCCCeEEEEEEeCCCceeEEEeeeeeeeee
Confidence            457999999999999999999999999999999999999999864

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.3e-16  Score=83.96  Aligned_cols=45  Identities=20%  Similarity=0.502  Sum_probs=42.5

Q ss_pred             CCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         25 RPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        25 ~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      ...|.|+||+||..||++..|.|.|+++++++|.|.|.+|+||.+
T Consensus         3 ~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~l~f~~f~le~~   47 (117)
T d1nzia1           3 TMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELS   47 (117)
T ss_dssp             CSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred             CcEEEEeCCCCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeeEeee
Confidence            467999999999999999999999999999999999999999864

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-16  Score=83.02  Aligned_cols=42  Identities=33%  Similarity=0.663  Sum_probs=40.0

Q ss_pred             EEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371         28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG   69 (72)
Q Consensus        28 g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~   69 (72)
                      |.|+||+||..||++..|.|.|.++.+++|+|.|.+|+|+..
T Consensus         1 G~i~SP~yP~~Y~~~~~C~w~I~~p~~~~I~l~f~~f~l~~~   42 (108)
T d2qqma3           1 GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPD   42 (108)
T ss_dssp             EEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC
T ss_pred             CEEeCCCCCCCCCCCCeEEEEEEeCCCceeeeEEEEEEeecc
Confidence            789999999999999999999999999999999999999854

>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-I
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.45  E-value=2.1e-13  Score=71.84  Aligned_cols=47  Identities=19%  Similarity=0.454  Sum_probs=42.0

Q ss_pred             CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeec
Q psy12371         12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEK   68 (72)
Q Consensus        12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~   68 (72)
                      ..|++.+     .+..|.|+||+||     +..|.|.|+++++++|+|.|..|+++-
T Consensus         4 ~~Cgg~l-----~~~~G~i~Sp~yP-----~~~C~W~I~~p~g~~I~l~f~~f~~~c   50 (109)
T d1sppa_           4 HACGGRL-----TDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLTC   50 (109)
T ss_dssp             CSSCEEE-----ECSEEEEECCCSS-----CSEEEEEEECCTTSEEEEEEEEEECCT
T ss_pred             ccCCCEE-----eCCCEEEeCCCCC-----CCcEEEEEEEccCceeEEEEecccccc
Confidence            4699998     5788999999998     458999999999999999999999873

>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-II
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=1.6e-13  Score=72.71  Aligned_cols=47  Identities=15%  Similarity=0.388  Sum_probs=42.7

Q ss_pred             CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeec
Q psy12371         12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEK   68 (72)
Q Consensus        12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~   68 (72)
                      ..|++.+     +...|.|.||+||..|     |.|.|+++++++|+|.|.+|+++-
T Consensus         7 ~~CGg~l-----~~~~G~i~SP~~P~~~-----C~W~I~~p~~~~I~l~f~~f~~~C   53 (112)
T d1sppb_           7 DECGRVI-----KDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLAC   53 (112)
T ss_dssp             GGTTEEE-----CCSEEEEECCSSCCSE-----EEEEEECCTTCEEEEEEEEEECCB
T ss_pred             CcCCCEE-----eCCcceEeCCCCCCCc-----eEEEEecCCcEEEEEEEEehhccc
Confidence            6899988     6889999999998765     999999999999999999999973

>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Acidic seminal fluid protein (ASFP)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=2.4e-12  Score=67.74  Aligned_cols=46  Identities=20%  Similarity=0.429  Sum_probs=41.8

Q ss_pred             CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEee
Q psy12371         12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE   67 (72)
Q Consensus        12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le   67 (72)
                      +.|++.+     +...|.|.||     |+++..|.|.|.++.+++|+|.|.+|+++
T Consensus         5 ~~Cgg~l-----t~~~G~i~SP-----y~~~~~C~w~I~~p~g~~I~l~f~~f~~~   50 (111)
T d1sfpa_           5 TNCGGIL-----KEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN   50 (111)
T ss_dssp             CSSCEEE-----CCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred             cCCCcEE-----ECCceeEcCC-----CCCCCcEEEEEEcCCCceeeEEEeecccc
Confidence            6899998     5789999998     55688999999999999999999999987